Query psy1916
Match_columns 195
No_of_seqs 113 out of 361
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 19:33:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1916.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1916hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xs8_A UPF0269 protein YGGX; h 14.5 47 0.0016 24.4 0.6 8 35-42 16-23 (91)
2 1t07_A Hypothetical UPF0269 pr 13.9 49 0.0017 24.4 0.6 8 35-42 18-25 (94)
3 2ddu_A Reelin; beta-jelly-roll 12.1 24 0.00084 32.0 -1.9 34 3-39 142-188 (387)
4 3tgu_G UQCRQ, mitochondrial ub 9.7 2E+02 0.0067 20.3 2.6 24 167-190 34-57 (81)
5 2noj_B EFB homologous protein; 8.7 80 0.0028 22.2 0.2 10 134-143 52-61 (80)
6 2ckc_A Chromodomain-helicase-D 8.2 64 0.0022 23.2 -0.5 20 23-43 49-68 (80)
7 3s1b_A Mini-Z; VEGF, cystine k 7.3 2.1E+02 0.007 17.0 1.6 15 70-84 15-29 (34)
8 3ro3_B Minsc, peptide of prote 7.3 1.7E+02 0.006 16.0 1.1 14 4-17 3-16 (22)
9 2itb_A TRNA-(MS(2)IO(6)A)-hydr 7.1 1.2E+02 0.0042 25.1 0.7 15 125-139 24-38 (206)
10 3k6g_A Telomeric repeat-bindin 6.4 1.9E+02 0.0066 21.7 1.4 14 4-17 38-51 (111)
No 1
>1xs8_A UPF0269 protein YGGX; helix-turn-helix, metal transport; NMR {Salmonella typhimurium} SCOP: d.279.1.1 PDB: 1yhd_A
Probab=14.49 E-value=47 Score=24.39 Aligned_cols=8 Identities=13% Similarity=0.036 Sum_probs=6.5
Q ss_pred cCCCCchH
Q psy1916 35 TLDYPPLF 42 (195)
Q Consensus 35 ~LDYPPl~ 42 (195)
|||+||+-
T Consensus 16 GLd~~P~P 23 (91)
T 1xs8_A 16 GQDFQLYP 23 (91)
T ss_dssp BCCCCSSC
T ss_pred CCCCCCCC
Confidence 79999973
No 2
>1t07_A Hypothetical UPF0269 protein PA5148; structural genomics, APC5047, conserved hypothetical protein, PSI, protein structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa} SCOP: d.279.1.1
Probab=13.92 E-value=49 Score=24.43 Aligned_cols=8 Identities=50% Similarity=0.717 Sum_probs=6.5
Q ss_pred cCCCCchH
Q psy1916 35 TLDYPPLF 42 (195)
Q Consensus 35 ~LDYPPl~ 42 (195)
|||+||+-
T Consensus 18 GLd~~PyP 25 (94)
T 1t07_A 18 GLDRPPYP 25 (94)
T ss_dssp BCSSCSSS
T ss_pred CCCCCCCC
Confidence 69999984
No 3
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Probab=12.05 E-value=24 Score=31.96 Aligned_cols=34 Identities=32% Similarity=0.685 Sum_probs=24.6
Q ss_pred cccchhhHhhhHHHHhhcCCCC--------cccccC-----CCCccCCCC
Q psy1916 3 RTSTDFEVHRNWLAITNSLPLS--------QWYTDT-----TSPWTLDYP 39 (195)
Q Consensus 3 Y~SgDfEaqRhWmeiT~~LPi~--------~WY~~~-----ts~W~LDYP 39 (195)
|+++|| .+|-.||.-||.+ +|.-.+ ...|+||--
T Consensus 142 ~~a~~~---~~W~riti~lP~~~~s~~TrFRW~Q~~~~~~~~~~WAlD~v 188 (387)
T 2ddu_A 142 YYTGDF---EEWTRITIAIPRSLASSKTRFRWIQESSSQKNVPPFGLDGV 188 (387)
T ss_dssp ECTTSC---SSCEEEEEECCGGGCSSCCEEEEECC------CCCCBCCCC
T ss_pred eccccc---cCceEEEEECChhhcCCcceEEEEcccCCcccCcceeEeeE
Confidence 677888 6889999999987 454332 236999964
No 4
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=9.73 E-value=2e+02 Score=20.34 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=17.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHh
Q psy1916 167 WFAVLLNLKHIFIYIAPAYFVFLL 190 (195)
Q Consensus 167 ~F~~~LnfKqm~LY~Ap~~F~yLL 190 (195)
.|=+.=-+|.-.+|.+||+.+..+
T Consensus 34 i~N~~RR~~~q~l~v~pPfi~~Y~ 57 (81)
T 3tgu_G 34 LPNVWRRFSSQVFKVAPPFLGAYL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhHhhHHHHHHHH
Confidence 444555678899999999887654
No 5
>2noj_B EFB homologous protein; protein-protein complex, immune system; 2.70A {Staphylococcus aureus subsp} SCOP: a.7.17.1
Probab=8.68 E-value=80 Score=22.19 Aligned_cols=10 Identities=50% Similarity=0.604 Sum_probs=7.2
Q ss_pred hhcccccccc
Q psy1916 134 VDHIHFQYNG 143 (195)
Q Consensus 134 IDh~HFQYN~ 143 (195)
|.-+|||||-
T Consensus 52 VNLi~F~~~~ 61 (80)
T 2noj_B 52 VNLIHFQHSY 61 (80)
T ss_dssp HHHCCCTTCH
T ss_pred hhHHHHHHHH
Confidence 3447999984
No 6
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=8.19 E-value=64 Score=23.16 Aligned_cols=20 Identities=25% Similarity=0.627 Sum_probs=14.9
Q ss_pred CCcccccCCCCccCCCCchHH
Q psy1916 23 LSQWYTDTTSPWTLDYPPLFA 43 (195)
Q Consensus 23 i~~WY~~~ts~W~LDYPPl~A 43 (195)
+-||-.+... +++|+|++.+
T Consensus 49 L~dWLrqhP~-y~vD~p~f~p 68 (80)
T 2ckc_A 49 LVEWLKLHPT-YTVDMPSYVP 68 (80)
T ss_dssp HHHHHHHCTT-EEESCCCCCC
T ss_pred HHHHHHHCCC-cEEecCCccc
Confidence 3467776655 7999999876
No 7
>3s1b_A Mini-Z; VEGF, cystine knot, signaling protein; 2.90A {Homo sapiens}
Probab=7.34 E-value=2.1e+02 Score=16.98 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=12.2
Q ss_pred CcchhhhHhHHHHHH
Q psy1916 70 SSATLLFQRLSVIFT 84 (195)
Q Consensus 70 s~~~~~FmR~tVi~s 84 (195)
+++..++||+.-|+|
T Consensus 15 dpnlnlyqriakivs 29 (34)
T 3s1b_A 15 DPNLNLYQRIAKIVS 29 (34)
T ss_dssp CSSCCHHHHHHHHHH
T ss_pred CCChhHHHHHHHHhc
Confidence 467789999988876
No 8
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=7.28 E-value=1.7e+02 Score=15.97 Aligned_cols=14 Identities=7% Similarity=0.287 Sum_probs=10.2
Q ss_pred ccchhhHhhhHHHH
Q psy1916 4 TSTDFEVHRNWLAI 17 (195)
Q Consensus 4 ~SgDfEaqRhWmei 17 (195)
++.|-+--|.|||=
T Consensus 3 ~~~qvDSV~rWmeD 16 (22)
T 3ro3_B 3 HFMQVDSVQRWMED 16 (26)
T ss_pred chhhhHHHHHHHHH
Confidence 45677777889983
No 9
>2itb_A TRNA-(MS(2)IO(6)A)-hydroxylase, putative; putative ATTH, structural genomics, joint center for structu genomics, JCSG; 2.05A {Pseudomonas putida} SCOP: a.25.1.7
Probab=7.07 E-value=1.2e+02 Score=25.13 Aligned_cols=15 Identities=13% Similarity=0.350 Sum_probs=12.8
Q ss_pred HHHhhhHhhhhcccc
Q psy1916 125 IIFNAGLFFVDHIHF 139 (195)
Q Consensus 125 ~l~~PgLilIDh~HF 139 (195)
.+-|+..||+||.|=
T Consensus 24 A~~nl~~iL~DHA~C 38 (206)
T 2itb_A 24 ALADQETLLIDHKNC 38 (206)
T ss_dssp HHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 348999999999884
No 10
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=6.37 E-value=1.9e+02 Score=21.74 Aligned_cols=14 Identities=29% Similarity=0.415 Sum_probs=12.0
Q ss_pred ccchhhHhhhHHHH
Q psy1916 4 TSTDFEVHRNWLAI 17 (195)
Q Consensus 4 ~SgDfEaqRhWmei 17 (195)
.|||||+-|+.+.-
T Consensus 38 ~SGel~at~~fL~~ 51 (111)
T 3k6g_A 38 NSGELEATSAFLAS 51 (111)
T ss_dssp TTTCHHHHHHHHHH
T ss_pred ccccHHHHHHHHhC
Confidence 58999999998876
Done!