Query psy1916
Match_columns 195
No_of_seqs 113 out of 361
Neff 4.8
Searched_HMMs 13730
Date Fri Aug 16 19:34:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1916.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1916hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3cx5h1 f.23.13.1 (H:2-94) Ubi 14.3 42 0.0031 22.9 2.1 18 173-190 50-67 (93)
2 d1t07a_ d.279.1.1 (A:) Hypothe 13.5 24 0.0018 23.6 0.6 8 35-42 18-25 (81)
3 d3cx5g1 f.27.1.1 (G:3-127) 14 12.8 6.3 0.00046 28.8 -2.9 31 5-36 9-41 (125)
4 d1ppjg_ f.23.13.1 (G:) Ubiquin 11.7 72 0.0053 20.7 2.6 26 165-190 32-57 (75)
5 d2gy9d1 d.66.1.2 (D:2-205) Rib 10.3 34 0.0025 26.3 0.6 13 132-144 114-126 (204)
6 d1xs8a_ d.279.1.1 (A:) Hypothe 10.1 37 0.0027 23.1 0.6 8 35-42 16-23 (91)
7 d1c06a_ d.66.1.2 (A:) Ribosoma 8.9 41 0.003 24.7 0.6 13 132-144 71-83 (159)
8 d1iq0a3 d.67.2.1 (A:1-96) Argi 7.4 54 0.0039 21.4 0.5 12 135-146 32-43 (96)
9 d2uubd1 d.66.1.2 (D:2-209) Rib 7.1 55 0.004 25.1 0.5 13 132-144 118-130 (208)
10 d2nojb1 a.7.17.1 (B:52-109) Un 6.9 52 0.0038 20.4 0.2 9 135-143 31-39 (58)
No 1
>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.27 E-value=42 Score=22.92 Aligned_cols=18 Identities=17% Similarity=0.384 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHHHh
Q psy1916 173 NLKHIFIYIAPAYFVFLL 190 (195)
Q Consensus 173 nfKqm~LY~Ap~~F~yLL 190 (195)
-+|+..+|.+||+.+..+
T Consensus 50 R~r~q~lyv~PPfi~~Y~ 67 (93)
T d3cx5h1 50 RFKSQFLYVLIPAGIYWY 67 (93)
T ss_dssp HHHTTHHHHHHHHHHHHH
T ss_pred hhhhhceEEcchHHHHHH
Confidence 468889999999877643
No 2
>d1t07a_ d.279.1.1 (A:) Hypothetical protein PA5148 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=13.49 E-value=24 Score=23.62 Aligned_cols=8 Identities=50% Similarity=0.717 Sum_probs=6.2
Q ss_pred cCCCCchH
Q psy1916 35 TLDYPPLF 42 (195)
Q Consensus 35 ~LDYPPl~ 42 (195)
|||+||+-
T Consensus 18 gLd~pP~P 25 (81)
T d1t07a_ 18 GLDRPPYP 25 (81)
T ss_dssp BCSSCSSS
T ss_pred CCCCCCCC
Confidence 68899874
No 3
>d3cx5g1 f.27.1.1 (G:3-127) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.81 E-value=6.3 Score=28.76 Aligned_cols=31 Identities=13% Similarity=0.204 Sum_probs=23.0
Q ss_pred cchhhHhhhHHHHhhcCCCCcccccCCCC--ccC
Q psy1916 5 STDFEVHRNWLAITNSLPLSQWYTDTTSP--WTL 36 (195)
Q Consensus 5 SgDfEaqRhWmeiT~~LPi~~WY~~~ts~--W~L 36 (195)
.|||=..|-|+.= .-.|+++||.|.+.| +||
T Consensus 9 ~~~~i~~~p~l~k-~~~p~a~w~~n~sgyrk~GL 41 (125)
T d3cx5g1 9 IGDYILKSPVLSK-LCVPVANQFINLAGYKKLGL 41 (125)
T ss_dssp HHHHHHHCHHHHH-HHHHHHHHHHHHHCGGGGTC
T ss_pred HHHHHHhcHHHHH-HHHHHHHHHHHHhChhhccC
Confidence 5788888888774 457999999996542 454
No 4
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.70 E-value=72 Score=20.72 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=19.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy1916 165 AFWFAVLLNLKHIFIYIAPAYFVFLL 190 (195)
Q Consensus 165 a~~F~~~LnfKqm~LY~Ap~~F~yLL 190 (195)
...|=+.=.+|+-.+|.+||+.+..+
T Consensus 32 ~gi~N~~RR~~~~~l~v~PPfi~~Y~ 57 (75)
T d1ppjg_ 32 KGIPNVLRRTRACILRVAPPFVAFYL 57 (75)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHhHHhceEEcCHHHHHHH
Confidence 44566667789999999999876543
No 5
>d2gy9d1 d.66.1.2 (D:2-205) Ribosomal protein S4 {Escherichia coli [TaxId: 562]}
Probab=10.31 E-value=34 Score=26.28 Aligned_cols=13 Identities=31% Similarity=0.322 Sum_probs=11.1
Q ss_pred hhhhcccccccch
Q psy1916 132 FFVDHIHFQYNGF 144 (195)
Q Consensus 132 ilIDh~HFQYN~~ 144 (195)
=+|-|||+.-||-
T Consensus 114 Q~v~Hghi~VNgk 126 (204)
T d2gy9d1 114 QLVSHKAIMVNGR 126 (204)
T ss_dssp HHHHTTCEEESSS
T ss_pred HHHHhcceecCCE
Confidence 4789999999984
No 6
>d1xs8a_ d.279.1.1 (A:) Hypothetical protein YggX {Salmonella typhimurium [TaxId: 90371]}
Probab=10.06 E-value=37 Score=23.13 Aligned_cols=8 Identities=13% Similarity=0.036 Sum_probs=6.4
Q ss_pred cCCCCchH
Q psy1916 35 TLDYPPLF 42 (195)
Q Consensus 35 ~LDYPPl~ 42 (195)
|||+||+-
T Consensus 16 gL~~pP~P 23 (91)
T d1xs8a_ 16 GQDFQLYP 23 (91)
T ss_dssp BCCCCSSC
T ss_pred CCCCCCCC
Confidence 68999874
No 7
>d1c06a_ d.66.1.2 (A:) Ribosomal protein S4 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=8.92 E-value=41 Score=24.72 Aligned_cols=13 Identities=31% Similarity=0.376 Sum_probs=10.8
Q ss_pred hhhhcccccccch
Q psy1916 132 FFVDHIHFQYNGF 144 (195)
Q Consensus 132 ilIDh~HFQYN~~ 144 (195)
=+|-|||+.-||-
T Consensus 71 Q~v~Hghi~vNgk 83 (159)
T d1c06a_ 71 QLVTHGHILVDGS 83 (159)
T ss_dssp HHHHTSCEEETTE
T ss_pred HHHHhcceEccce
Confidence 4688999999983
No 8
>d1iq0a3 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Thermus thermophilus [TaxId: 274]}
Probab=7.40 E-value=54 Score=21.39 Aligned_cols=12 Identities=8% Similarity=0.025 Sum_probs=9.9
Q ss_pred hcccccccchHH
Q psy1916 135 DHIHFQYNGFLF 146 (195)
Q Consensus 135 Dh~HFQYN~~~l 146 (195)
|||+|+-|++.+
T Consensus 32 ~~GD~a~na~~l 43 (96)
T d1iq0a3 32 KPGDYGVPLFAL 43 (96)
T ss_dssp SSCSEEEECSHH
T ss_pred CCcchHHHHHHH
Confidence 799999997654
No 9
>d2uubd1 d.66.1.2 (D:2-209) Ribosomal protein S4 {Thermus thermophilus [TaxId: 274]}
Probab=7.15 E-value=55 Score=25.12 Aligned_cols=13 Identities=38% Similarity=0.439 Sum_probs=11.0
Q ss_pred hhhhcccccccch
Q psy1916 132 FFVDHIHFQYNGF 144 (195)
Q Consensus 132 ilIDh~HFQYN~~ 144 (195)
=+|-|||+.-||-
T Consensus 118 Q~v~Hg~i~vNg~ 130 (208)
T d2uubd1 118 QLVRHGHITVNGR 130 (208)
T ss_dssp HHHHTTCEEETTE
T ss_pred HHHHhcCeecCCe
Confidence 4789999999984
No 10
>d2nojb1 a.7.17.1 (B:52-109) Uncharacterized protein SAV1155 {Staphylococcus aureus [TaxId: 1280]}
Probab=6.85 E-value=52 Score=20.42 Aligned_cols=9 Identities=44% Similarity=0.545 Sum_probs=6.7
Q ss_pred hcccccccc
Q psy1916 135 DHIHFQYNG 143 (195)
Q Consensus 135 Dh~HFQYN~ 143 (195)
.-+|||||-
T Consensus 31 nlv~f~~~~ 39 (58)
T d2nojb1 31 NLIHFQHSY 39 (58)
T ss_dssp HHCCCTTCH
T ss_pred hHhhHHHHH
Confidence 447999983
Done!