RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy1916
         (195 letters)



>gnl|CDD|217394 pfam03155, Alg6_Alg8, ALG6, ALG8 glycosyltransferase family.
           N-linked (asparagine-linked) glycosylation of proteins
           is mediated by a highly conserved pathway in eukaryotes,
           in which a lipid (dolichol phosphate)-linked
           oligosaccharide is assembled at the endoplasmic
           reticulum membrane prior to the transfer of the
           oligosaccharide moiety to the target asparagine
           residues. This oligosaccharide is composed of
           Glc(3)Man(9)GlcNAc(2). The addition of the three glucose
           residues is the final series of steps in the synthesis
           of the oligosaccharide precursor. Alg6 transfers the
           first glucose residue, and Alg8 transfers the second
           one. In the human alg6 gene, a C->T transition, which
           causes Ala333 to be replaced with Val, has been
           identified as the cause of a congenital disorder of
           glycosylation, designated as type Ic OMIM:603147.
          Length = 463

 Score =  189 bits (482), Expect = 2e-58
 Identities = 81/193 (41%), Positives = 108/193 (55%), Gaps = 14/193 (7%)

Query: 6   TDFEVHRNWLAITNSLPLSQWYTDTTSPWTLDYPPLFAFFEYLLSFVAYYF-DPQMLD-V 63
            DFE  R+WL IT++LP+SQWY ++TS W LDYPPL A+  YLL  +A +F DP+ L  V
Sbjct: 25  GDFEAQRHWLEITHNLPISQWYYNSTSNWGLDYPPLTAYHSYLLGQIAKFFIDPEWLALV 84

Query: 64  KNLNYKSSATLLFQRLSVIFTDFVLVYG-VKECADFLTRSKIIKHKKWTQDLGSPVVIFQ 122
            +  Y+S AT LF RL+VI +D +     ++     L R                  I  
Sbjct: 85  TSRGYESLATKLFMRLTVIISDLLFYLPALRFYCKSLKRMSPKDK-----------FILA 133

Query: 123 ILIIFNAGLFFVDHIHFQYNGFLFGVLLLSIARILEGNCYEGAFWFAVLLNLKHIFIYIA 182
            LI+   GL  +DH HFQYNG L G+LL SIA +L+      AF F + LN K + +Y A
Sbjct: 134 SLILLYPGLLLIDHGHFQYNGVLLGLLLYSIAALLKNRYLLAAFLFVLALNFKQMELYHA 193

Query: 183 PAYFVFLLRNHFT 195
           P +FV+LLR    
Sbjct: 194 PPFFVYLLRRCLN 206


>gnl|CDD|177450 PHA02668, PHA02668, GM-CSF/IL-2 inhibition factor; Provisional.
          Length = 265

 Score = 32.2 bits (73), Expect = 0.11
 Identities = 12/18 (66%), Positives = 13/18 (72%), Gaps = 1/18 (5%)

Query: 27  YTDTTSPWTLDYP-PLFA 43
           Y DT  PW LDYP PLF+
Sbjct: 112 YLDTWDPWVLDYPQPLFS 129


>gnl|CDD|214405 MTH00027, COX2, cytochrome c oxidase subunit II; Provisional.
          Length = 262

 Score = 30.0 bits (67), Expect = 0.58
 Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 14/99 (14%)

Query: 97  DFLTRSKIIK--HKKWT---QDLGSPVVIFQILIIFNAGLFFVDHIHFQYNGFLFGVLLL 151
             +  + +IK  ++ W    QD GSPV+  + +I+ +  + F+  I       + GV+L 
Sbjct: 18  YPMNVASMIKDANEPWQLGFQDAGSPVM--EEIIMLHDQILFILTI-------IVGVVLW 68

Query: 152 SIARILEGNCYEGAFWFAVLLNLKHIFIYIAPAYFVFLL 190
            I RIL GN Y   +W  +  +L  +   + PA+ + L+
Sbjct: 69  LIIRILLGNNYYSYYWNKLDGSLIEVIWTLIPAFILILI 107


>gnl|CDD|215277 PLN02501, PLN02501, digalactosyldiacylglycerol synthase.
          Length = 794

 Score = 27.3 bits (60), Expect = 6.0
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)

Query: 149 LLLSIARILE--GNCYEGAFW 167
           L L IA +L+  G+CY+G FW
Sbjct: 290 LDLRIASVLQSTGHCYDGGFW 310


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.332    0.145    0.469 

Gapped
Lambda     K      H
   0.267   0.0736    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,461,207
Number of extensions: 1016907
Number of successful extensions: 1181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1174
Number of HSP's successfully gapped: 57
Length of query: 195
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 103
Effective length of database: 6,857,034
Effective search space: 706274502
Effective search space used: 706274502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (25.3 bits)