BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1917
(212 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OCP|A Chain A, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OCP|B Chain B, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|A Chain A, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|B Chain B, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OGJ|A Chain A, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|B Chain B, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|C Chain C, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|D Chain D, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
Length = 139
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 80/113 (70%)
Query: 34 TANDIQIQRYDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEG 93
+ + + + Y K +SK LIK AI+DNDF+KNL+ Q++E+V+ M+ EY DS +I EG
Sbjct: 2 SGSHVTLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEG 61
Query: 94 EAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTV 146
+ G+ ++V +G+ +V K+G L MGPGK FGELAILYNCTRTA+++ + V
Sbjct: 62 DVGSLVYVMEDGKVEVTKEGVKLCTMGPGKVFGELAILYNCTRTATVKTLVNV 114
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 78/106 (73%)
Query: 41 QRYDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLF 100
+++ K RSK LIK AI+DNDF+KNL+ Q++E+V+ M+ EY DS +I EG+ G+ ++
Sbjct: 25 RKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVY 84
Query: 101 VSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTV 146
V +G+ +V K+G L MGPGK FGELAILYNCTRTA+++ + V
Sbjct: 85 VMEDGKVEVTKEGVKLCTMGPGKVFGELAILYNCTRTATVKTLVNV 130
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Query: 61 DFLKNLDTLQ------VKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIK--- 111
+FLK++ T Q + ++ + + + Y+ Y+I +G G+ F+ ++G+ V +
Sbjct: 157 EFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDS 216
Query: 112 ---DGKILAVMGPGKAFGELAILYNCTRTASI 140
D L +G G FGE A+ RTA++
Sbjct: 217 PNEDPVFLRTLGKGDWFGEKALQGEDVRTANV 248
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Query: 20 KKQGVSGESSTNGQTANDIQIQRYDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMH 79
++ GVS E T + ++ + KD+++ + AI N +LD + ++ ++M
Sbjct: 96 RRGGVSAEVYTEEDAVSYVR-KVIPKDYKTMTALAKAISKNVLFAHLDDNERSDIFDAMF 154
Query: 80 QAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTAS 139
+ A VI +G G++ +V +GE V +G+ + + G +FGELA++Y R A+
Sbjct: 155 PVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVNGEWVTNISEGGSFGELALIYGTPRAAT 214
Query: 140 IRG 142
++
Sbjct: 215 VKA 217
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%)
Query: 150 NFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQ 209
NF V +GE V +G+ + + G +FGELA++Y R A+++A T K+W +DR ++
Sbjct: 173 NFYVVDQGEVDVYVNGEWVTNISEGGSFGELALIYGTPRAATVKAKTDLKLWGIDRDSYR 232
Query: 210 K 210
+
Sbjct: 233 R 233
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 58/112 (51%), Gaps = 8/112 (7%)
Query: 47 FRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGE 106
R +++ + + L++L+ + + +++ +++ ++ +GE G+D ++ EG
Sbjct: 240 LRKRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGT 299
Query: 107 FQVIK----DGKILAV--MGPGKAFGELAILYNCTRTASI--RGFLTVLHFN 150
V++ + + + V +GP FGE+A+L N R A++ RG L + +
Sbjct: 300 ASVLQRRSPNEEYVEVGRLGPSDYFGEIALLLNRPRAATVVARGPLKCVKLD 351
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Query: 20 KKQGVSGESSTNGQTANDIQIQRYDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMH 79
++ +S E T A+ ++ + KD+++ + AI N +LD + ++ ++M
Sbjct: 1 RRGAISAEVYTEEDAASYVR-KVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMF 59
Query: 80 QAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTAS 139
+ A VI +G+ G++ +V +GE V + + +G G +FGELA++Y R A+
Sbjct: 60 PVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAAT 119
Query: 140 IRG 142
++
Sbjct: 120 VKA 122
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 150 NFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQ 209
NF V +GE V + + +G G +FGELA++Y R A+++A T K+W +DR ++
Sbjct: 78 NFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYR 137
Query: 210 K 210
+
Sbjct: 138 R 138
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 58/112 (51%), Gaps = 8/112 (7%)
Query: 47 FRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGE 106
R +++ + + L++LD + + +++ +++ ++ +GE G++ F+ EG
Sbjct: 145 LRKRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGS 204
Query: 107 FQVIK----DGKILAV--MGPGKAFGELAILYNCTRTASI--RGFLTVLHFN 150
V++ + + + V +GP FGE+A+L N R A++ RG L + +
Sbjct: 205 AAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPRAATVVARGPLKCVKLD 256
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Query: 20 KKQGVSGESSTNGQTANDIQIQRYDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMH 79
++ +S E T A+ ++ + KD+++ + AI N +LD + ++ ++M
Sbjct: 3 RRGAISAEVYTEEDAASYVR-KVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMF 61
Query: 80 QAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTAS 139
+ A VI +G+ G++ +V +GE V + + +G G +FGELA++Y R A+
Sbjct: 62 PVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAAT 121
Query: 140 IRG 142
++
Sbjct: 122 VKA 124
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 150 NFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQ 209
NF V +GE V + + +G G +FGELA++Y R A+++A T K+W +DR ++
Sbjct: 80 NFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYR 139
Query: 210 K 210
+
Sbjct: 140 R 140
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 58/112 (51%), Gaps = 8/112 (7%)
Query: 47 FRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGE 106
R +++ + + L++LD + + +++ +++ ++ +GE G++ F+ EG
Sbjct: 147 LRKRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGS 206
Query: 107 FQVIK----DGKILAV--MGPGKAFGELAILYNCTRTASI--RGFLTVLHFN 150
V++ + + + V +GP FGE+A+L N R A++ RG L + +
Sbjct: 207 AAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPRAATVVARGPLKCVKLD 258
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Query: 20 KKQGVSGESSTNGQTANDIQIQRYDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMH 79
++ +S E T A+ ++ + KD+++ + AI N +LD + ++ ++M
Sbjct: 5 RRGAISAEVYTEEDAASYVR-KVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMF 63
Query: 80 QAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTAS 139
+ A VI +G+ G++ +V +GE V + + +G G +FGELA++Y R A+
Sbjct: 64 PVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAAT 123
Query: 140 IRG 142
++
Sbjct: 124 VKA 126
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 150 NFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQ 209
NF V +GE V + + +G G +FGELA++Y R A+++A T K+W +DR ++
Sbjct: 82 NFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYR 141
Query: 210 K 210
+
Sbjct: 142 R 142
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 58/112 (51%), Gaps = 8/112 (7%)
Query: 47 FRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGE 106
R +++ + + L++LD + + +++ +++ ++ +GE G++ F+ EG
Sbjct: 149 LRKRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGS 208
Query: 107 FQVIK----DGKILAV--MGPGKAFGELAILYNCTRTASI--RGFLTVLHFN 150
V++ + + + V +GP FGE+A+L N + A++ RG L + +
Sbjct: 209 AAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPKAATVVARGPLKCVKLD 260
>pdb|3PVB|B Chain B, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 160
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 1/122 (0%)
Query: 20 KKQGVSGESSTNGQTANDIQIQRYDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMH 79
++ +S E T A+ ++ + KD+++ + AI N +LD + ++ ++M
Sbjct: 11 RRGAISAEVYTEEDAASYVR-KVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMF 69
Query: 80 QAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTAS 139
+ A VI +G+ G++ +V +GE V + + +G G +FGELA++Y R A+
Sbjct: 70 PVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAAT 129
Query: 140 IR 141
++
Sbjct: 130 VK 131
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 150 NFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQ 209
NF V +GE V + + +G G +FGELA++Y R A+++A T K+W +DR ++
Sbjct: 88 NFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYR 147
Query: 210 K 210
+
Sbjct: 148 R 148
>pdb|3FHI|B Chain B, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
pdb|3IIA|A Chain A, Crystal Structure Of Apo (91-244) Ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PLQ|A Chain A, Crystal Structure Of Pka Type I Regulatory Subunit Bound
With Rp-8-Br- Camps
pdb|3PNA|A Chain A, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PNA|B Chain B, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
Length = 154
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 53/97 (54%)
Query: 45 KDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAE 104
KD+++ + AI N +LD + ++ ++M + A VI +G+ G++ +V +
Sbjct: 28 KDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQ 87
Query: 105 GEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIR 141
GE V + + +G G +FGELA++Y R A+++
Sbjct: 88 GEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATVK 124
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 150 NFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQ 209
NF V +GE V + + +G G +FGELA++Y R A+++A T K+W +DR ++
Sbjct: 81 NFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYR 140
Query: 210 K 210
+
Sbjct: 141 R 141
>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit Of
Pka
Length = 246
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 172 GPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQK 210
GPG +FGELA++YN R A++ A + C +W LDR F+K
Sbjct: 72 GPGSSFGELALMYNSPRAATVVATSDCLLWALDRLTFRK 110
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 39 QIQRYDKDFRSKQLIKAAIMDNDFLKN-LDTLQVKEMVESMHQAEYKADSYVITEGEAGN 97
Q+QR +K R N+FL N LD+ + ++ + + + +I +G+ G+
Sbjct: 1 QLQRLEKSIR-----------NNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGD 49
Query: 98 DLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASI 140
+V +G + + GPG +FGELA++YN R A++
Sbjct: 50 YFYVVEKGTVDFYVNDNKVNSSGPGSSFGELALMYNSPRAATV 92
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 150 NFSVSAEGEFQVIKDGK-ILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVF 208
NF + G V K G+ ++ + FGE+A+L + R A++ A KV L + F
Sbjct: 168 NFYLIEYGAVDVSKKGQGVINKLKDHDYFGEVALLNDLPRQATVTATKRTKVATLGKSGF 227
Query: 209 QK 210
Q+
Sbjct: 228 QR 229
>pdb|2QVS|B Chain B, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
Length = 310
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 53 IKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVI-- 110
++ A D KNLD Q+ +++++M + K D +VI +G+ G++ +V G + ++
Sbjct: 36 LQEACKDILLFKNLDQEQLSQVLDAMFEKIVKTDEHVIDQGDDGDNFYVIERGTYDILVT 95
Query: 111 KDGKILAV--MGPGKAFGELAILYNCTRTASI 140
KD + +V +FGELA++YN R A+I
Sbjct: 96 KDNQTRSVGQYDNRGSFGELALMYNTPRAATI 127
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
Query: 48 RSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEF 107
+ +++ ++ I K+L+ + ++V+ + + YK +I +GE + ++ GE
Sbjct: 153 KKRKMFESFIESVPLFKSLEMSERMKIVDVIGEKIYKDGERIIAQGEKADSFYIIESGEV 212
Query: 108 QVIKDGKI------------LAVMGPGKAFGELAILYNCTRTASIRG 142
++ K +A G+ FGELA++ N R AS G
Sbjct: 213 SILIRSKTKSNKNGGNQEVEIAHCHKGQYFGELALVTNKPRAASAYG 259
>pdb|3IDC|B Chain B, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 164
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 48/161 (29%)
Query: 50 KQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQV 109
+ ++ A D KNLD Q+ +++++M + K +VI +G+ G++ +V G F +
Sbjct: 39 RNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDI 98
Query: 110 IKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILA 169
+ G G+ C RG
Sbjct: 99 Y-----VKCDGVGR----------CVGNYDNRG--------------------------- 116
Query: 170 VMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQK 210
+FGELA++YN R A+I A +P +W LDR F++
Sbjct: 117 ------SFGELALMYNTPRAATITATSPGALWGLDRVTFRR 151
>pdb|3IDB|B Chain B, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 161
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 48/161 (29%)
Query: 50 KQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQV 109
+ ++ A D KNLD Q+ +++++M + K +VI +G+ G++ +V G F +
Sbjct: 33 RNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDI 92
Query: 110 IKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILA 169
+ G G+ C RG
Sbjct: 93 Y-----VKCDGVGR----------CVGNYDNRG--------------------------- 110
Query: 170 VMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQK 210
+FGELA++YN R A+I A +P +W LDR F++
Sbjct: 111 ------SFGELALMYNTPRAATITATSPGALWGLDRVTFRR 145
>pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant Of The Type Ii Beta
Regulatory Subunit Of Camp-Dependent Protein Kinase
Length = 305
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 48/161 (29%)
Query: 50 KQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQV 109
+ ++ A D KNLD Q+ +++++M + K +VI +G+ G++ +V G F +
Sbjct: 29 RNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDI 88
Query: 110 IKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILA 169
+ G G+ C RG
Sbjct: 89 Y-----VKCDGVGR----------CVGNYDNRG--------------------------- 106
Query: 170 VMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQK 210
+FGELA++YN R A+I A +P +W LDR F++
Sbjct: 107 ------SFGELALMYNTPRAATITATSPGALWGLDRVTFRR 141
>pdb|3TNP|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|E Chain E, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 79/195 (40%), Gaps = 53/195 (27%)
Query: 19 SKKQGVSGESSTNGQTANDIQ---IQRYDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMV 75
+++ V E+ + +D + I D R++ ++ A D KNLD Q+ +++
Sbjct: 108 TRRASVCAEAYNPDEEEDDAESRIIHPKTDDQRNR--LQEACKDILLFKNLDPEQMSQVL 165
Query: 76 ESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCT 135
++M + K +VI +G+ G++ +V G F + + G G+ C
Sbjct: 166 DAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIY-----VKCDGVGR----------CV 210
Query: 136 RTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRAL 195
RG +FGELA++YN + A+I A
Sbjct: 211 GNYDNRG---------------------------------SFGELALMYNTPKAATITAT 237
Query: 196 TPCKVWMLDRRVFQK 210
+P +W LDR F++
Sbjct: 238 SPGALWGLDRVTFRR 252
>pdb|3TNQ|A Chain A, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 79/195 (40%), Gaps = 53/195 (27%)
Query: 19 SKKQGVSGESSTNGQTANDIQ---IQRYDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMV 75
+++ V E+ + +D + I D R++ ++ A D KNLD Q+ +++
Sbjct: 108 TRRAXVCAEAYNPDEEEDDAESRIIHPKTDDQRNR--LQEACKDILLFKNLDPEQMSQVL 165
Query: 76 ESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCT 135
++M + K +VI +G+ G++ +V G F + + G G+ C
Sbjct: 166 DAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIY-----VKCDGVGR----------CV 210
Query: 136 RTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRAL 195
RG +FGELA++YN + A+I A
Sbjct: 211 GNYDNRG---------------------------------SFGELALMYNTPKAATITAT 237
Query: 196 TPCKVWMLDRRVFQK 210
+P +W LDR F++
Sbjct: 238 SPGALWGLDRVTFRR 252
>pdb|3R6S|A Chain A, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|B Chain B, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|C Chain C, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|D Chain D, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|E Chain E, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|F Chain F, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
Length = 247
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 62 FLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIK---DGK--IL 116
+ +D V +++ M + + + EGE G+ L++ G+ ++ + DG+ +L
Sbjct: 33 IFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHAPDGRENLL 92
Query: 117 AVMGPGKAFGELAILYNCTRTAS 139
+MGP FGEL+I RT+S
Sbjct: 93 TIMGPSDMFGELSIFDPGPRTSS 115
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 164 DGK--ILAVMGPGKAFGELAILYNCTRTASIRALT 196
DG+ +L +MGP FGEL+I RT+S +T
Sbjct: 86 DGRENLLTIMGPSDMFGELSIFDPGPRTSSAVCVT 120
>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant
pdb|1U12|B Chain B, M. Loti Cyclic Nucleotide Binding Domain Mutant
Length = 138
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 46 DF-RSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAE 104
DF R+ QL+ A + L + E+V ++ A + + GE G+ +F E
Sbjct: 5 DFVRNWQLVAAV----PLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVE 60
Query: 105 GEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTV 146
G V + +GPG FGE+A++ R+A++ TV
Sbjct: 61 GSVSVATPNPV--ELGPGAFFGEMALISGEPRSATVSAATTV 100
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 171 MGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQ 209
+GPG FGE+A++ R+A++ A T + L FQ
Sbjct: 73 LGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQ 111
>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain
pdb|1VP6|C Chain C, M.Loti Ion Channel Cylic Nucleotide Binding Domain
Length = 138
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 46 DF-RSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAE 104
DF R+ QL+ A + L + E+V ++ A + + GE G+ +F E
Sbjct: 5 DFVRNWQLVAAV----PLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVE 60
Query: 105 GEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTV 146
G V + +GPG FGE+A++ R+A++ TV
Sbjct: 61 GSVSVATPNPV--ELGPGAFFGEMALISGEPRSATVSAATTV 100
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 171 MGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQ 209
+GPG FGE+A++ R+A++ A T + L FQ
Sbjct: 73 LGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQ 111
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 46 DF-RSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAE 104
DF R+ QL+ A + L + E+V ++ A + + GE G+ +F E
Sbjct: 222 DFVRNWQLVAAV----PLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVE 277
Query: 105 GEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTV 146
G V + +GPG FGE+A++ R+A++ TV
Sbjct: 278 GSVSVATPNPV--ELGPGAFFGEMALISGEPRSATVSAATTV 317
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 171 MGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQ 209
+GPG FGE+A++ R+A++ A T + L FQ
Sbjct: 290 LGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQ 328
>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide-
Activated K+ Channel Binding Domain In Complex With Camp
pdb|2KXL|A Chain A, Solution Structure Of A Bacterial Cyclic
Nucleotide-Activated K+ Channel Binding Domain In The
Unliganded State
Length = 142
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 46 DF-RSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAE 104
DF R+ QL+ A + L + E+V ++ A + + GE G+ +F E
Sbjct: 9 DFVRNWQLVAAV----PLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVE 64
Query: 105 GEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTV 146
G V + +GPG FGE+A++ R+A++ TV
Sbjct: 65 GSVSVATPNPV--ELGPGAFFGEMALISGEPRSATVSAATTV 104
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 171 MGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQ 209
+GPG FGE+A++ R+A++ A T + L FQ
Sbjct: 77 LGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQ 115
>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
pdb|3CL1|B Chain B, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
Length = 140
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 46 DF-RSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAE 104
DF R+ QL+ A + L + E+V ++ A + + GE G+ +F E
Sbjct: 7 DFVRNWQLVAAV----PLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVE 62
Query: 105 GEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTV 146
G V + +GPG FGE+A++ R+A++ TV
Sbjct: 63 GSVSVATPNPV--ELGPGAFFGEMALISGEPRSATVSAATTV 102
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 171 MGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQ 209
+GPG FGE+A++ R+A++ A T + L FQ
Sbjct: 75 LGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQ 113
>pdb|3H3U|A Chain A, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
pdb|3H3U|B Chain B, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
Length = 224
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 71 VKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIK---DGK--ILAVMGPGKAF 125
+ + + + ++ V EGE G+ L++ G+ ++ + DG+ +L +MGP F
Sbjct: 19 IAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMF 78
Query: 126 GELAILYNCTRTAS 139
GEL+I RT+S
Sbjct: 79 GELSIFDPGPRTSS 92
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 164 DGK--ILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDR 205
DG+ +L +MGP FGEL+I RT+S +T + +DR
Sbjct: 63 DGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDR 106
>pdb|3MZH|A Chain A, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
pdb|3MZH|B Chain B, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
Length = 225
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 71 VKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIK---DGK--ILAVMGPGKAF 125
+ + + + ++ V EGE G+ L++ G+ ++ + DG+ +L +MGP F
Sbjct: 20 IAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMF 79
Query: 126 GELAILYNCTRTAS 139
GEL+I RT+S
Sbjct: 80 GELSIFDPGPRTSS 93
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 164 DGK--ILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDR 205
DG+ +L +MGP FGEL+I RT+S +T + +DR
Sbjct: 64 DGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDR 107
>pdb|3D0S|A Chain A, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|3D0S|B Chain B, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|4A2U|A Chain A, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|B Chain B, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|C Chain C, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|D Chain D, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|E Chain E, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|F Chain F, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|G Chain G, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|H Chain H, Crp(Cap) From Myco. Tuberculosis, With Camp
Length = 227
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 71 VKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIK---DGK--ILAVMGPGKAF 125
+ + + + ++ V EGE G+ L++ G+ ++ + DG+ +L +MGP F
Sbjct: 22 IAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMF 81
Query: 126 GELAILYNCTRTAS 139
GEL+I RT+S
Sbjct: 82 GELSIFDPGPRTSS 95
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 164 DGK--ILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDR 205
DG+ +L +MGP FGEL+I RT+S +T + +DR
Sbjct: 66 DGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDR 109
>pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|B Chain B, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|C Chain C, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|D Chain D, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I59|B Chain B, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 71 VKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIK---DGK--ILAVMGPGKAF 125
+ + + + ++ V EGE G+ L++ G+ ++ + DG+ +L +MGP F
Sbjct: 44 IAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMF 103
Query: 126 GELAILYNCTRTAS 139
GEL+I RT+S
Sbjct: 104 GELSIFDPGPRTSS 117
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 164 DGK--ILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDR 205
DG+ +L +MGP FGEL+I RT+S +T + +DR
Sbjct: 88 DGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDR 131
>pdb|2PQQ|A Chain A, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|B Chain B, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|C Chain C, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|D Chain D, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
Length = 149
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 60 NDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIK---DGK-- 114
N LD Q E+ S + + EG+ G+ L+V EG+ ++ + DG+
Sbjct: 10 NPLFAALDDEQSAELRASXSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGREN 69
Query: 115 ILAVMGPGKAFGELAILYNCTRTAS 139
LAV+GP + GEL++ RTA+
Sbjct: 70 XLAVVGPSELIGELSLFDPGPRTAT 94
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 153 VSAEGEFQVIK---DGK--ILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWML 203
V EG+ ++ + DG+ LAV+GP + GEL++ RTA+ ALT K+ L
Sbjct: 51 VVTEGKVKLHRTSPDGRENXLAVVGPSELIGELSLFDPGPRTATGTALTEVKLLAL 106
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 62 FLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVI-KDGKILAVMG 120
F D+ V +V + ++ YVI EG G+ +F +G +I DG I +
Sbjct: 78 FFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLS 137
Query: 121 PGKAFGELAILYNCTRTASIRG-------FLTVLHFN 150
G FGE+ +L R AS++ L+V HFN
Sbjct: 138 DGSYFGEICLLTRERRVASVKCETYCTLFSLSVQHFN 174
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 161 VIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWML 203
++ DG I + G FGE+ +L R AS++ T C ++ L
Sbjct: 126 IMSDGVIATSLSDGSYFGEICLLTRERRVASVKCETYCTLFSL 168
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 46 DFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEG 105
+F ++L+ + + N D V M+ + ++ Y+I EG G ++ G
Sbjct: 70 NFNXRKLVASMPL----FANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG 125
Query: 106 EFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRG 142
V+ G + G FGE+ +L RTAS+R
Sbjct: 126 VVSVLTKGNKETKLADGSYFGEICLLTRGRRTASVRA 162
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 156 EGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWML 203
G V+ G + G FGE+ +L RTAS+RA T C+++ L
Sbjct: 124 HGVVSVLTKGNKETKLADGSYFGEICLLTRGRRTASVRADTYCRLYSL 171
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%)
Query: 65 NLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124
N D V M+ + ++ Y+I EG G ++ G V+ G + G
Sbjct: 79 NADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKETKLADGSY 138
Query: 125 FGELAILYNCTRTASIRG 142
FGE+ +L RTAS+R
Sbjct: 139 FGEICLLTRGRRTASVRA 156
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 156 EGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWML 203
G V+ G + G FGE+ +L RTAS+RA T C+++ L
Sbjct: 118 HGVVSVLTKGNKETKLADGSYFGEICLLTRGRRTASVRADTYCRLYSL 165
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 46 DFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEG 105
+F +++L+ + + N D V M+ + ++ Y+I EG G ++ G
Sbjct: 69 NFNNRKLVASMPL----FANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG 124
Query: 106 EFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRG 142
V+ G + G FGE+++L RTAS+R
Sbjct: 125 VVSVLTKGNKEMKLSDGSYFGEISLLTRGRRTASVRA 161
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 156 EGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWML 203
G V+ G + G FGE+++L RTAS+RA T +++ L
Sbjct: 123 HGVVSVLTKGNKEMKLSDGSYFGEISLLTRGRRTASVRADTYSRLYSL 170
>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
pdb|3CLP|C Chain C, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
Length = 140
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 46 DF-RSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAE 104
DF R+ QL+ A + L + E+V ++ A + + GE G+ +F E
Sbjct: 7 DFVRNWQLVAAV----PLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVE 62
Query: 105 GEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTV 146
G V + +GPG FGE+A++ +A++ TV
Sbjct: 63 GSVSVATPNPV--ELGPGAFFGEMALISGEPESATVSAATTV 102
>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|B Chain B, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|C Chain C, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|D Chain D, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
Length = 140
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 46 DF-RSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAE 104
DF R+ QL+ A + L + E+V ++ A + + GE G+ +F E
Sbjct: 7 DFVRNWQLVAAV----PLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVE 62
Query: 105 GEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTV 146
G V + +GPG FGE+A++ +A++ TV
Sbjct: 63 GSVSVATPNPV--ELGPGAFFGEMALISGEPWSATVSAATTV 102
>pdb|3I59|A Chain A, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 71 VKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIK---DGK--ILAVMGPGKAF 125
+ + + + ++ V EGE G+ L++ G+ ++ + DG+ +L + GP F
Sbjct: 44 IAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIXGPSDMF 103
Query: 126 GELAILYNCTRTAS 139
GEL+I RT+S
Sbjct: 104 GELSIFDPGPRTSS 117
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 164 DGK--ILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDR 205
DG+ +L + GP FGEL+I RT+S +T + +DR
Sbjct: 88 DGRENLLTIXGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDR 131
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%)
Query: 65 NLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124
N D V M+ + ++ Y+I EG G ++ G V+ G + G
Sbjct: 85 NADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSY 144
Query: 125 FGELAILYNCTRTASIRG 142
FGE+ +L RTAS+R
Sbjct: 145 FGEICLLTRGRRTASVRA 162
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 156 EGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWML 203
G V+ G + G FGE+ +L RTAS+RA T C+++ L
Sbjct: 124 HGVVSVLTKGNKEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSL 171
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%)
Query: 65 NLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124
N D V M+ + ++ Y+I EG G ++ G V+ G + G
Sbjct: 82 NADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSY 141
Query: 125 FGELAILYNCTRTASIRG 142
FGE+ +L RTAS+R
Sbjct: 142 FGEICLLTRGRRTASVRA 159
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 156 EGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWML 203
G V+ G + G FGE+ +L RTAS+RA T C+++ L
Sbjct: 121 HGVVSVLTKGNKEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSL 168
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%)
Query: 65 NLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124
N D V M+ + ++ Y+I EG G ++ G V+ G + G
Sbjct: 82 NADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSY 141
Query: 125 FGELAILYNCTRTASIRG 142
FGE+ +L RTAS+R
Sbjct: 142 FGEICLLTRGRRTASVRA 159
Score = 34.3 bits (77), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 156 EGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWML 203
G V+ G + G FGE+ +L RTAS+RA T C+++ L
Sbjct: 121 HGVVSVLTKGNKEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSL 168
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%)
Query: 65 NLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124
N D V M+ + ++ Y+I EG G ++ G V+ G + G
Sbjct: 82 NADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSY 141
Query: 125 FGELAILYNCTRTASIRG 142
FGE+ +L RTAS+R
Sbjct: 142 FGEICLLTRGRRTASVRA 159
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 156 EGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWML 203
G V+ G + G FGE+ +L RTAS+RA T C+++ L
Sbjct: 121 HGVVSVLTKGNKEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSL 168
>pdb|4F8A|A Chain A, Cyclic Nucleotide Binding-Homology Domain From Mouse Eag1
Potassium Channel
Length = 160
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 8/59 (13%)
Query: 157 GEFQVIKDGKILAVMGPGKAFG-----ELAILYNCTRTASIRALTPCKVWMLDRRVFQK 210
G +VI+D +++A++G G FG E + +C A++RALT C + ++ R QK
Sbjct: 77 GSLEVIQDDEVVAILGKGDVFGDVFWKEATLAQSC---ANVRALTYCDLHVIKRDALQK 132
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 93 GEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGEL 128
GE+ + L G +VI+D +++A++G G FG++
Sbjct: 65 GESVDSLCFVVSGSLEVIQDDEVVAILGKGDVFGDV 100
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%)
Query: 65 NLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124
N D V M+ + ++ Y+I EG G ++ G V+ G + G
Sbjct: 80 NADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSY 139
Query: 125 FGELAILYNCTRTASIRGFLTVLHFNFSV 153
FGE+ +L RTAS+R ++ SV
Sbjct: 140 FGEICLLTRGRRTASVRADTYCRLYSLSV 168
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 156 EGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWML 203
G V+ G + G FGE+ +L RTAS+RA T C+++ L
Sbjct: 119 HGVVSVLTKGNKEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSL 166
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%)
Query: 65 NLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124
N D V M+ + ++ Y+I EG G ++ G V+ G + G
Sbjct: 79 NADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKETKLADGSY 138
Query: 125 FGELAILYNCTRTASIRG 142
FGE+ +L RTA +R
Sbjct: 139 FGEICLLTRGRRTARVRA 156
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 156 EGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWML 203
G V+ G + G FGE+ +L RTA +RA T C+++ L
Sbjct: 118 HGVVSVLTKGNKETKLADGSYFGEICLLTRGRRTARVRADTYCRLYSL 165
>pdb|3E97|A Chain A, Crystal Structure Of Transcriptional Regulator Of CrpFNR
Family (Yp_604437.1) From Deinococcus Geothermalis Dsm
11300 At 1.86 A Resolution
Length = 231
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 153 VSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQ 209
VS G +V+ D + PG GE A+L + R+AS+RALTP + L R F+
Sbjct: 63 VSLGGRERVLGD-----IYAPG-VVGETAVLAHQERSASVRALTPVRTLXLHREHFE 113
>pdb|4EV0|A Chain A, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
pdb|4EV0|D Chain D, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
Length = 216
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 83 YKADSYVITEGEAGNDLFVSAEGEFQVIKDG-----KILAVMGPGKAFGELAILYNCTRT 137
Y + +G+ G L++ A G+ ++ + + LA++GPG+ FGE+++L R+
Sbjct: 27 YPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLLDEGERS 86
Query: 138 AS 139
AS
Sbjct: 87 AS 88
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 166 KILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDR 205
+ LA++GPG+ FGE+++L R+AS A+ ++ L R
Sbjct: 63 RTLALLGPGELFGEMSLLDEGERSASAVAVEDTELLALFR 102
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%)
Query: 65 NLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124
N D V M+ + ++ Y+I EG G ++ G VI + G
Sbjct: 85 NADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHGVAGVITKSSKEMKLTDGSY 144
Query: 125 FGELAILYNCTRTASIRGFLTVLHFNFSV 153
FGE+ +L RTAS+R ++ SV
Sbjct: 145 FGEICLLTKGRRTASVRADTYCRLYSLSV 173
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 174 GKAFGELAILYNCTRTASIRALTPCKVWML 203
G FGE+ +L RTAS+RA T C+++ L
Sbjct: 142 GSYFGEICLLTKGRRTASVRADTYCRLYSL 171
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 83 YKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRG 142
++ Y+I EG G + G V+ G + G FGE+ +L RTAS+R
Sbjct: 100 FQPGDYIIREGTIGKKXYFIQHGVVSVLTKGNKEXKLSDGSYFGEICLLTRGRRTASVRA 159
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 156 EGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWML 203
G V+ G + G FGE+ +L RTAS+RA T C+++ L
Sbjct: 121 HGVVSVLTKGNKEXKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSL 168
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 80 QAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGK-ILAVMGPGKAFGELAILYNCTRTA 138
++ K + + +GE G ++ +G V+ GK ++ + G FG+LA++ + R A
Sbjct: 363 ESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAA 422
Query: 139 SIRGFLTVLHFNFSVSAEGEFQVIKD 164
SI HF V E ++++D
Sbjct: 423 SIVLREDNCHF-LRVDKEDGNRILRD 447
>pdb|1O7F|A Chain A, Crystal Structure Of The Regulatory Domain Of Epac2
Length = 469
Score = 33.9 bits (76), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 80 QAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGK-ILAVMGPGKAFGELAILYNCTRTA 138
++ K + + +GE G ++ +G V+ GK ++ + G FG+LA++ + R A
Sbjct: 363 ESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAA 422
Query: 139 SI 140
SI
Sbjct: 423 SI 424
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 33.5 bits (75), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 80 QAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGK-ILAVMGPGKAFGELAILYNCTRTA 138
++ K + + +GE G ++ +G V+ GK ++ + G FG+LA++ + R A
Sbjct: 363 ESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAA 422
Query: 139 SI 140
SI
Sbjct: 423 SI 424
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 694
Score = 33.5 bits (75), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 80 QAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGK-ILAVMGPGKAFGELAILYNCTRTA 138
++ K + + +GE G ++ +G V+ GK ++ + G FG+LA++ + R A
Sbjct: 58 ESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAA 117
Query: 139 SI 140
SI
Sbjct: 118 SI 119
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 88 YVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFG 126
++I +G+A ++ G +V+KD +LA++G G G
Sbjct: 108 FLIRQGDALQAIYFVCSGSMEVLKDNTVLAILGKGDLIG 146
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 155 AEGEFQVIKDGKILAVMGPGKAFGELAILYN--CTRTASIRALTPCKV 200
G +V+KD +LA++G G G ++ A+++ALT C +
Sbjct: 123 CSGSMEVLKDNTVLAILGKGDLIGSDSLTKEQVIKTNANVKALTYCDL 170
>pdb|3FX3|A Chain A, Structure Of A Putative Camp-Binding Regulatory Protein
From Silicibacter Pomeroyi Dss-3
pdb|3FX3|B Chain B, Structure Of A Putative Camp-Binding Regulatory Protein
From Silicibacter Pomeroyi Dss-3
Length = 237
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 167 ILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVF 208
+++V G++FGE L N S A+TPC+V + VF
Sbjct: 76 VVSVFTRGESFGEAVALRNTPYPVSAEAVTPCEVXHIPSPVF 117
>pdb|2GAU|A Chain A, Crystal Structure Of Transcriptional Regulator, Crp/fnr
Family From Porphyromonas Gingivalis (apc80792),
Structural Genomics, Mcsg
Length = 232
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 84 KADSYVITEGEAGNDLFVSAEGEFQVIKDG-----KILAVMGPGKAFG 126
K S V +EG+ N+LF EG+ +++++G I ++ PG+ FG
Sbjct: 39 KKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFG 86
>pdb|3H3Z|A Chain A, Crystal Structure Of A Putative Cyclic Nucleotide Binding
Protein (Spoa0323) From Ruegeria Pomeroyi Dss-3 At 2.35
A Resolution
pdb|3H3Z|B Chain B, Crystal Structure Of A Putative Cyclic Nucleotide Binding
Protein (Spoa0323) From Ruegeria Pomeroyi Dss-3 At 2.35
A Resolution
Length = 235
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 167 ILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVF 208
+++V G++FGE L N S A+TPC+V + VF
Sbjct: 74 VVSVFTRGESFGEAVALRNTPYPVSAEAVTPCEVXHIPSPVF 115
>pdb|3GYD|A Chain A, Crystal Structure Of A Cyclic Nucleotide-Binding Domain
(Mfla_1926) From Methylobacillus Flagellatus Kt At 1.79
A Resolution
pdb|3GYD|B Chain B, Crystal Structure Of A Cyclic Nucleotide-Binding Domain
(Mfla_1926) From Methylobacillus Flagellatus Kt At 1.79
A Resolution
Length = 187
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 86 DSYVITEGEAGNDLFVSAEGEFQVIKD-----GKILAVMGPGKAFGELAILYNCTRTAS 139
D ++TEG+ G+ L + GE VIKD + +A +G G GE + + R+AS
Sbjct: 70 DCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIGEXSXIDGXPRSAS 128
>pdb|4AVC|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
pdb|4AVC|B Chain B, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
Length = 333
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 167 ILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVF 208
I+A PG GE+A+L + R+A++ + P W R F
Sbjct: 77 IIARALPGXIVGEIALLRDSPRSATVTTIEPLTGWTGGRGAF 118
>pdb|3PFM|A Chain A, Crystal Structure Of A Eal Domain Of Ggdef Domain Protein
From Pseudomonas Fluorescens Pf
Length = 243
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 58 MDNDFLKNLDTLQVKEM-VESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKIL 116
+D +++++D K + +E++ +A + D +I E V EGE QVI++ +
Sbjct: 177 IDGSYIRDIDQESDKRLFIEAIQRAAHSIDLPLIAER-------VETEGELQVIREXGLY 229
Query: 117 AVMGPGKAFGELA 129
V G+ FGE A
Sbjct: 230 GVQ--GQLFGEPA 240
>pdb|4AVA|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 From Mycobacterium Tuberculosis
pdb|4AVB|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
pdb|4AVB|B Chain B, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
Length = 333
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 167 ILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVF 208
I+A PG GE+A+L + R+A++ + P W R F
Sbjct: 77 IIARALPGMIVGEIALLRDSPRSATVTTIEPLTGWTGGRGAF 118
>pdb|1DOR|A Chain A, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
pdb|1DOR|B Chain B, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
pdb|2DOR|A Chain A, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
Complexed With Orotate
pdb|2DOR|B Chain B, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
Complexed With Orotate
pdb|1JUE|A Chain A, 1.8 A Resolution Structure Of Native Lactococcus Lactis
Dihydroorotate Dehydrogenase A
pdb|1JUE|B Chain B, 1.8 A Resolution Structure Of Native Lactococcus Lactis
Dihydroorotate Dehydrogenase A
pdb|2BSL|A Chain A, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,4-Dihydroxybenzoate
pdb|2BSL|B Chain B, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,4-Dihydroxybenzoate
pdb|2BX7|A Chain A, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,5-Dihydroxybenzoate
pdb|2BX7|B Chain B, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,5-Dihydroxybenzoate
Length = 311
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 21/103 (20%)
Query: 66 LDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAF 125
D + M E ++Q +YV + GN LF+ E E VIK P F
Sbjct: 169 FDLVHFDIMAEILNQFPL---TYVNSVNSIGNGLFIDPEAESVVIK---------PKDGF 216
Query: 126 GELAILY-NCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKI 167
G + Y T A++R F T L + E Q+I G I
Sbjct: 217 GGIGGAYIKPTALANVRAFYTRL--------KPEIQIIGTGGI 251
>pdb|1JQX|A Chain A, The R57a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JQX|B Chain B, The R57a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 21/103 (20%)
Query: 66 LDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAF 125
D + M E ++Q +YV + GN LF+ E E VIK P F
Sbjct: 169 FDLVHFDIMAEILNQFPL---TYVNSVNSIGNGLFIDPEAESVVIK---------PKDGF 216
Query: 126 GELAILY-NCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKI 167
G + Y T A++R F T L + E Q+I G I
Sbjct: 217 GGIGGAYIKPTALANVRAFYTRL--------KPEIQIIGTGGI 251
>pdb|1JRC|A Chain A, The N67a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JRC|B Chain B, The N67a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 21/103 (20%)
Query: 66 LDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAF 125
D + M E ++Q +YV + GN LF+ E E VIK P F
Sbjct: 169 FDLVHFDIMAEILNQFPL---TYVNSVNSIGNGLFIDPEAESVVIK---------PKDGF 216
Query: 126 GELAILY-NCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKI 167
G + Y T A++R F T L + E Q+I G I
Sbjct: 217 GGIGGAYIKPTALANVRAFYTRL--------KPEIQIIGTGGI 251
>pdb|1JRB|A Chain A, The P56a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JRB|B Chain B, The P56a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 21/103 (20%)
Query: 66 LDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAF 125
D + M E ++Q +YV + GN LF+ E E VIK P F
Sbjct: 169 FDLVHFDIMAEILNQFPL---TYVNSVNSIGNGLFIDPEAESVVIK---------PKDGF 216
Query: 126 GELAILY-NCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKI 167
G + Y T A++R F T L + E Q+I G I
Sbjct: 217 GGIGGAYIKPTALANVRAFYTRL--------KPEIQIIGTGGI 251
>pdb|1JUB|A Chain A, The K136e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JUB|B Chain B, The K136e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1OVD|A Chain A, The K136e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A In Complex With Orotate
pdb|1OVD|B Chain B, The K136e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A In Complex With Orotate
Length = 311
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 21/103 (20%)
Query: 66 LDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAF 125
D + M E ++Q +YV + GN LF+ E E VIK P F
Sbjct: 169 FDLVHFDIMAEILNQFPL---TYVNSVNSIGNGLFIDPEAESVVIK---------PKDGF 216
Query: 126 GELAILY-NCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKI 167
G + Y T A++R F T L + E Q+I G I
Sbjct: 217 GGIGGAYIKPTALANVRAFYTRL--------KPEIQIIGTGGI 251
>pdb|1JQV|A Chain A, The K213e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JQV|B Chain B, The K213e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 21/103 (20%)
Query: 66 LDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAF 125
D + M E ++Q +YV + GN LF+ E E VIK P F
Sbjct: 169 FDLVHFDIMAEILNQFPL---TYVNSVNSIGNGLFIDPEAESVVIK---------PEDGF 216
Query: 126 GELAILY-NCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKI 167
G + Y T A++R F T L + E Q+I G I
Sbjct: 217 GGIGGAYIKPTALANVRAFYTRL--------KPEIQIIGTGGI 251
>pdb|1ZH8|A Chain A, Crystal Structure Of Oxidoreductase (tm0312) From
Thermotoga Maritima At 2.50 A Resolution
pdb|1ZH8|B Chain B, Crystal Structure Of Oxidoreductase (tm0312) From
Thermotoga Maritima At 2.50 A Resolution
Length = 340
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 107 FQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTVL 147
+QV+ +GK + P +A +LA + C R+A + F++ L
Sbjct: 299 YQVVAEGKPNDLGSPVQALKDLAFIEACVRSAGNKVFVSSL 339
>pdb|3TXV|A Chain A, Crystal Structure Of A Probable Tagatose 6 Phosphate
Kinase From Sinorhizobium Meliloti 1021
Length = 450
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 117 AVMGPGKAFG-ELAILYNCTRTASIRGFLTVLHFNFSVSAEGEFQ-------VIKDGKIL 168
AV+ PG FG E I Y+ R + L LH + ++Q ++ DG +
Sbjct: 226 AVVQPGVEFGNENVIAYDRARAEKLSATLGQLHGXVFEAHSTDYQTPDALRELVADGFAI 285
Query: 169 AVMGPGKAFGELAILYNCTRTAS 191
+GPG F LY + A+
Sbjct: 286 LKVGPGLTFALREALYGLDQIAA 308
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,953,832
Number of Sequences: 62578
Number of extensions: 228119
Number of successful extensions: 756
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 633
Number of HSP's gapped (non-prelim): 129
length of query: 212
length of database: 14,973,337
effective HSP length: 95
effective length of query: 117
effective length of database: 9,028,427
effective search space: 1056325959
effective search space used: 1056325959
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)