Query psy1917
Match_columns 212
No_of_seqs 156 out of 1589
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 19:35:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1917.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1917hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1113|consensus 100.0 1.6E-34 3.4E-39 238.4 16.4 191 19-212 88-346 (368)
2 KOG0614|consensus 100.0 1.1E-29 2.3E-34 218.9 9.1 193 20-212 118-384 (732)
3 KOG1113|consensus 99.8 7.1E-21 1.5E-25 157.7 6.6 141 5-146 187-332 (368)
4 KOG0614|consensus 99.8 4.2E-20 9.2E-25 159.9 1.7 141 5-145 219-368 (732)
5 PRK09392 ftrB transcriptional 99.7 3.6E-16 7.7E-21 127.0 12.5 111 54-212 6-116 (236)
6 KOG0498|consensus 99.7 1.2E-16 2.6E-21 145.7 7.1 126 39-212 403-530 (727)
7 PLN03192 Voltage-dependent pot 99.6 1.6E-15 3.4E-20 143.3 11.9 120 45-212 364-483 (823)
8 cd00038 CAP_ED effector domain 99.6 7.6E-15 1.7E-19 104.3 12.0 103 62-211 1-103 (115)
9 PRK11753 DNA-binding transcrip 99.6 1E-14 2.3E-19 116.2 12.7 103 63-212 5-108 (211)
10 PLN02868 acyl-CoA thioesterase 99.6 1.8E-14 4E-19 126.3 14.6 110 52-211 5-114 (413)
11 COG0664 Crp cAMP-binding prote 99.6 1.1E-14 2.5E-19 115.1 11.7 108 58-212 3-110 (214)
12 PF00027 cNMP_binding: Cyclic 99.6 1.1E-14 2.5E-19 100.0 8.9 85 81-212 2-86 (91)
13 smart00100 cNMP Cyclic nucleot 99.6 4.8E-14 1E-18 100.6 12.3 103 62-211 1-105 (120)
14 KOG0500|consensus 99.5 2.4E-14 5.2E-19 123.4 9.8 123 40-212 292-420 (536)
15 PRK10402 DNA-binding transcrip 99.5 3.9E-14 8.4E-19 114.5 9.0 109 53-212 10-118 (226)
16 PRK11161 fumarate/nitrate redu 99.5 2.1E-13 4.5E-18 110.6 11.6 108 57-212 15-123 (235)
17 COG2905 Predicted signal-trans 99.4 1.2E-12 2.5E-17 115.1 10.1 109 53-212 5-113 (610)
18 KOG0499|consensus 99.4 3.8E-13 8.3E-18 118.3 6.7 110 54-212 526-638 (815)
19 PRK13918 CRP/FNR family transc 99.4 4.6E-12 9.9E-17 100.3 10.7 84 77-208 5-90 (202)
20 PRK09391 fixK transcriptional 99.3 1.9E-11 4.1E-16 99.1 10.3 89 74-212 34-122 (230)
21 TIGR03697 NtcA_cyano global ni 99.3 1.3E-11 2.8E-16 96.9 8.2 80 86-212 1-82 (193)
22 KOG0501|consensus 98.9 9.7E-10 2.1E-14 97.1 3.1 107 54-212 547-655 (971)
23 KOG2968|consensus 98.7 4E-08 8.7E-13 90.6 8.9 127 84-210 392-593 (1158)
24 KOG2968|consensus 98.4 2.7E-07 5.8E-12 85.3 4.9 128 5-146 439-581 (1158)
25 KOG3542|consensus 97.9 1.3E-05 2.7E-10 72.7 4.5 75 39-113 265-340 (1283)
26 PRK11832 putative DNA-binding 97.6 0.00083 1.8E-08 53.4 9.9 89 72-211 16-105 (207)
27 KOG3542|consensus 97.3 0.00095 2.1E-08 60.9 7.3 70 40-109 22-91 (1283)
28 PF04831 Popeye: Popeye protei 97.2 0.0079 1.7E-07 45.2 10.1 103 62-211 9-115 (153)
29 COG0664 Crp cAMP-binding prote 92.2 0.23 4.9E-06 38.6 4.3 34 116-149 66-99 (214)
30 PF00027 cNMP_binding: Cyclic 90.4 0.29 6.3E-06 32.4 2.8 35 115-149 41-75 (91)
31 PF07883 Cupin_2: Cupin domain 89.8 0.85 1.8E-05 29.0 4.5 43 81-124 3-46 (71)
32 PLN03192 Voltage-dependent pot 85.1 0.9 2E-05 43.7 3.5 35 115-149 438-472 (823)
33 PRK13290 ectC L-ectoine syntha 82.9 4 8.7E-05 29.8 5.4 47 78-124 37-84 (125)
34 COG1917 Uncharacterized conser 80.8 4.3 9.4E-05 29.4 5.0 47 78-125 45-92 (131)
35 PRK10402 DNA-binding transcrip 80.7 1.9 4.1E-05 34.5 3.3 55 87-149 52-107 (226)
36 PRK09392 ftrB transcriptional 79.8 3.1 6.7E-05 33.3 4.3 35 115-149 71-105 (236)
37 KOG0499|consensus 79.5 1 2.2E-05 41.3 1.5 37 112-148 587-626 (815)
38 COG0662 {ManC} Mannose-6-phosp 78.8 22 0.00047 25.8 8.2 47 77-124 37-84 (127)
39 PF11699 CENP-C_C: Mif2/CENP-C 77.9 8.3 0.00018 26.2 5.3 27 98-125 35-61 (85)
40 PF05899 Cupin_3: Protein of u 77.1 3.9 8.5E-05 26.8 3.4 29 97-125 26-54 (74)
41 cd00038 CAP_ED effector domain 76.2 4.9 0.00011 27.1 4.0 36 115-150 59-94 (115)
42 KOG0498|consensus 75.9 1.9 4.1E-05 40.8 2.2 34 115-148 483-518 (727)
43 PRK11753 DNA-binding transcrip 71.9 5.4 0.00012 31.1 3.7 35 115-149 62-97 (211)
44 COG3718 IolB Uncharacterized e 71.0 19 0.00042 29.3 6.5 36 78-113 31-66 (270)
45 KOG0500|consensus 70.3 2.6 5.6E-05 37.8 1.6 46 88-143 352-403 (536)
46 PRK13918 CRP/FNR family transc 70.0 7.5 0.00016 30.1 4.1 34 115-149 50-83 (202)
47 PF01050 MannoseP_isomer: Mann 68.8 48 0.001 25.0 9.1 75 78-180 65-144 (151)
48 TIGR03697 NtcA_cyano global ni 67.0 7 0.00015 29.9 3.3 33 116-148 36-70 (193)
49 smart00100 cNMP Cyclic nucleot 66.3 12 0.00025 25.3 4.1 33 115-147 59-93 (120)
50 smart00835 Cupin_1 Cupin. This 63.0 22 0.00048 26.3 5.3 48 77-124 31-84 (146)
51 TIGR01479 GMP_PMI mannose-1-ph 59.5 68 0.0015 28.8 8.6 46 78-124 378-424 (468)
52 PRK11171 hypothetical protein; 56.5 49 0.0011 27.4 6.7 47 77-124 185-232 (266)
53 PRK11171 hypothetical protein; 55.3 99 0.0021 25.5 8.3 46 78-124 63-110 (266)
54 COG3450 Predicted enzyme of th 53.9 40 0.00088 24.3 5.0 42 82-125 51-92 (116)
55 PRK13264 3-hydroxyanthranilate 52.4 35 0.00075 26.6 4.8 41 84-125 42-86 (177)
56 PF14633 SH2_2: SH2 domain; PD 52.3 23 0.00049 28.6 3.9 43 52-99 30-73 (220)
57 TIGR03037 anthran_nbaC 3-hydro 50.8 75 0.0016 24.3 6.3 23 88-111 41-63 (159)
58 PRK15460 cpsB mannose-1-phosph 48.1 1.3E+02 0.0028 27.3 8.5 46 78-124 387-433 (478)
59 PRK04190 glucose-6-phosphate i 46.5 83 0.0018 24.8 6.2 46 79-124 71-129 (191)
60 PRK09943 DNA-binding transcrip 46.0 72 0.0016 24.5 5.9 42 82-124 113-155 (185)
61 TIGR03214 ura-cupin putative a 46.0 67 0.0015 26.5 5.9 47 78-125 60-108 (260)
62 PLN02868 acyl-CoA thioesterase 45.2 29 0.00063 30.6 3.9 32 115-148 72-103 (413)
63 PHA00672 hypothetical protein 43.8 58 0.0013 23.9 4.5 36 78-114 49-84 (152)
64 TIGR03404 bicupin_oxalic bicup 43.7 2E+02 0.0042 25.1 8.7 47 78-124 247-298 (367)
65 TIGR03214 ura-cupin putative a 37.8 1E+02 0.0022 25.4 5.8 49 75-124 178-227 (260)
66 COG3837 Uncharacterized conser 35.6 66 0.0014 24.5 3.9 50 79-129 45-96 (161)
67 PF12852 Cupin_6: Cupin 34.1 83 0.0018 24.0 4.5 33 92-124 31-64 (186)
68 TIGR03404 bicupin_oxalic bicup 33.6 1.4E+02 0.003 26.1 6.1 48 78-125 69-120 (367)
69 TIGR02451 anti_sig_ChrR anti-s 33.1 1.2E+02 0.0027 24.1 5.4 32 77-108 128-159 (215)
70 PF13128 DUF3954: Protein of u 31.9 65 0.0014 19.6 2.7 34 157-190 10-43 (50)
71 PF04962 KduI: KduI/IolB famil 31.6 1.3E+02 0.0029 24.8 5.5 49 78-126 29-78 (261)
72 PF07697 7TMR-HDED: 7TM-HD ext 29.8 33 0.00071 27.0 1.6 32 66-97 174-207 (222)
73 PF02311 AraC_binding: AraC-li 28.8 1.2E+02 0.0025 21.0 4.3 28 96-124 23-50 (136)
74 PRK15457 ethanolamine utilizat 28.7 1.2E+02 0.0026 24.7 4.6 23 154-177 181-203 (233)
75 PF06249 EutQ: Ethanolamine ut 27.0 1E+02 0.0023 23.3 3.8 13 99-111 98-110 (152)
76 cd06929 NR_LBD_F1 Ligand-bindi 24.8 95 0.0021 23.3 3.3 31 47-77 12-42 (174)
77 KOG2378|consensus 24.8 37 0.00079 30.5 1.1 24 121-144 1-24 (573)
78 TIGR02272 gentisate_1_2 gentis 24.7 3E+02 0.0066 23.7 6.6 33 81-113 255-287 (335)
79 COG3257 GlxB Uncharacterized p 23.2 1.7E+02 0.0037 23.7 4.4 34 90-124 77-110 (264)
80 PF02084 Bindin: Bindin; Inte 20.8 33 0.00072 27.7 0.0 48 38-85 118-167 (238)
81 cd00173 SH2 Src homology 2 dom 20.4 1.8E+02 0.004 19.0 3.7 28 63-95 4-31 (94)
82 cd06930 NR_LBD_F2 Ligand-bindi 20.3 1.6E+02 0.0035 21.6 3.8 30 48-77 10-39 (165)
No 1
>KOG1113|consensus
Probab=100.00 E-value=1.6e-34 Score=238.44 Aligned_cols=191 Identities=29% Similarity=0.477 Sum_probs=170.6
Q ss_pred CCCCcEEeeccCCCCCCCcceeecccCCHHHHHHHHHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCe
Q psy1917 19 SKKQGVSGESSTNGQTANDIQIQRYDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGND 98 (212)
Q Consensus 19 ~~r~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~ 98 (212)
.||++||+|..++.. +.+....+||++++++.+.+++++.-+|.+|+++++.+++++|..+++++|++|++||+.+++
T Consensus 88 ~RRssV~aE~~tp~~--d~~~~~~~pKd~e~~~~L~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~ 165 (368)
T KOG1113|consen 88 VRRSSVSAEEITPDD--DEFKRKYIPKDDETRRRLEEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDN 165 (368)
T ss_pred cccceeeeeecCccc--hhhhhcCCCCCHHHHHHHHHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCc
Confidence 789999999998766 455667789999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee-----------------------------
Q psy1917 99 LFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF----------------------------- 149 (212)
Q Consensus 99 ~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~----------------------------- 149 (212)
||+|-+|++.|++++..+..+++|++|||+||+||.||.|||+|.+++..|
T Consensus 166 fYvI~kGt~dVyv~~~~v~~~~~g~sFGElALmyn~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~l~s~ 245 (368)
T KOG1113|consen 166 FYVIDKGTFDVYVNGTYVTTYSPGGSFGELALMYNPPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPFLESV 245 (368)
T ss_pred EEEEecceEEEEECCeEEeeeCCCCchhhhHhhhCCCcccceeeccccceEEEeeceeEEEeeccchhhhhhhhhhhhcc
Confidence 999999999999999999999999999999999999999999998776654
Q ss_pred -------------------------------------eeEEeecceEEEEECC--eEEEEeCCCCeeeHhhhhcCCCcee
Q psy1917 150 -------------------------------------NFSVSAEGEFQVIKDG--KILAVMGPGKAFGELAILYNCTRTA 190 (212)
Q Consensus 150 -------------------------------------~~~i~~~g~~~~~~~~--~~~~~l~~G~~fGe~~ll~~~~r~~ 190 (212)
.||++.+|+..+.+.+ ..+ .+++||||||.+++.+.+|.+
T Consensus 246 pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~v~v-kl~~~dyfge~al~~~~pr~A 324 (368)
T KOG1113|consen 246 PILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDGVEV-KLKKGDYFGELALLKNLPRAA 324 (368)
T ss_pred hhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCCeEE-EechhhhcchHHHHhhchhhc
Confidence 2344555544433222 234 899999999999999999999
Q ss_pred EEEEeccEEEEEEchhhhhccC
Q psy1917 191 SIRALTPCKVWMLDRRVFQKSA 212 (212)
Q Consensus 191 sv~a~~~~~~~~l~~~~f~~i~ 212 (212)
+|.|.++..|+.+++..|++++
T Consensus 325 tv~a~~~~kc~~~dk~~ferll 346 (368)
T KOG1113|consen 325 TVVAKGRLKCAKLDKPRFERLL 346 (368)
T ss_pred eeeccCCceeeeeChHHHHHHh
Confidence 9999999999999999999875
No 2
>KOG0614|consensus
Probab=99.96 E-value=1.1e-29 Score=218.95 Aligned_cols=193 Identities=48% Similarity=0.738 Sum_probs=169.1
Q ss_pred CCCcEEeeccCCCCC-CCcceeecccCCHHHHHHHHHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCe
Q psy1917 20 KKQGVSGESSTNGQT-ANDIQIQRYDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGND 98 (212)
Q Consensus 20 ~r~~v~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~ 98 (212)
++.++|||++..... ..+.+++++.|+....++|.+++....|+++|+..+++++..+|..+.|++|+.|+++||+++.
T Consensus 118 kkq~vsae~t~~~~~~s~~~~l~~~~Kd~~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~ 197 (732)
T KOG0614|consen 118 KKQAVSAEPTNFTIDPSSSITLPRYNKDVGAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSH 197 (732)
T ss_pred HHhhccccccccccccccccccccccCCccHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCce
Confidence 344789998875433 4568899999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee-----------------------------
Q psy1917 99 LFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF----------------------------- 149 (212)
Q Consensus 99 ~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~----------------------------- 149 (212)
+|++.+|++.|++.++.+..+++|.+|||+|+|||++|+|||+|.+++..|
T Consensus 198 ~yV~aeG~~~V~~~g~ll~~m~~gtvFGELAILynctRtAsV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~~~fLrsv 277 (732)
T KOG0614|consen 198 LYVSAEGELQVSREGKLLGKMGAGTVFGELAILYNCTRTASVRALTDVRLWAIDREVFQAIMMRTGLERHEQYMNFLRSV 277 (732)
T ss_pred EEEeecceEEEeeCCeeeeccCCchhhhHHHHHhCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999998777643
Q ss_pred -------------------------------------eeEEeecceEEEEECCe------EEEEeCCCCeeeHhhhhcCC
Q psy1917 150 -------------------------------------NFSVSAEGEFQVIKDGK------ILAVMGPGKAFGELAILYNC 186 (212)
Q Consensus 150 -------------------------------------~~~i~~~g~~~~~~~~~------~~~~l~~G~~fGe~~ll~~~ 186 (212)
.||++..|+..+.+... .+..+++||+|||.+++...
T Consensus 278 ~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~FGE~al~~ed 357 (732)
T KOG0614|consen 278 PLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDYFGERALLGED 357 (732)
T ss_pred hhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccchhhHHHhhccC
Confidence 23444444444433221 57889999999999999999
Q ss_pred CceeEEEEecc-EEEEEEchhhhhccC
Q psy1917 187 TRTASIRALTP-CKVWMLDRRVFQKSA 212 (212)
Q Consensus 187 ~r~~sv~a~~~-~~~~~l~~~~f~~i~ 212 (212)
.|+++++|..+ +.|+.|+++.|.+++
T Consensus 358 vRtAniia~~~gv~cl~lDresF~~li 384 (732)
T KOG0614|consen 358 VRTANIIAQAPGVECLTLDRESFKKLI 384 (732)
T ss_pred ccchhhhccCCCceEEEecHHHHHHhc
Confidence 99999999998 999999999998763
No 3
>KOG1113|consensus
Probab=99.83 E-value=7.1e-21 Score=157.74 Aligned_cols=141 Identities=22% Similarity=0.382 Sum_probs=123.8
Q ss_pred CCCCCCcccccccCCCCC-cEEeeccCCCCCCCcceeecccCC--HHHHHHHHHHhhcCccCCCCCHHHHHHHHhhceEE
Q psy1917 5 DPLSSLGKVGQLLNSKKQ-GVSGESSTNGQTANDIQIQRYDKD--FRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQA 81 (212)
Q Consensus 5 ~~g~~fge~~l~~~~~r~-~v~~e~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~ 81 (212)
.||.+|||+||++|.||. +|.|.+....|..+...+.++... ...+..+.++|.++|++..+...+...+++.+..+
T Consensus 187 ~~g~sFGElALmyn~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~l~s~pil~~l~k~er~kv~dal~~k 266 (368)
T KOG1113|consen 187 SPGGSFGELALMYNPPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPFLESVPILESLEKLERAKVADALGTK 266 (368)
T ss_pred CCCCchhhhHhhhCCCcccceeeccccceEEEeeceeEEEeeccchhhhhhhhhhhhcchhhHHHHHHHHHhhhccccee
Confidence 699999999999999998 588888778888777766665443 44566778999999999999999999999999999
Q ss_pred EecCCCeEEccCCCCCeeEEEecCEEEEEECC--EEEEEeCCCCcchhhhhhhCCCcceEEEEEeee
Q psy1917 82 EYKADSYVITEGEAGNDLFVSAEGEFQVIKDG--KILAVMGPGKAFGELAILYNCTRTASIRGFLTV 146 (212)
Q Consensus 82 ~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~--~~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~ 146 (212)
.|++|+.|+.||+.++.+|+|.+|+|.+.... ..+ .++.+++|||+||+.+.||.||+.|....
T Consensus 267 ~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~v~v-kl~~~dyfge~al~~~~pr~Atv~a~~~~ 332 (368)
T KOG1113|consen 267 SYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDGVEV-KLKKGDYFGELALLKNLPRAATVVAKGRL 332 (368)
T ss_pred eccCCceEEeccCCcceEEEecccccchhhccCCeEE-EechhhhcchHHHHhhchhhceeeccCCc
Confidence 99999999999999999999999999998643 345 99999999999999999999999875443
No 4
>KOG0614|consensus
Probab=99.78 E-value=4.2e-20 Score=159.94 Aligned_cols=141 Identities=20% Similarity=0.320 Sum_probs=119.7
Q ss_pred CCCCCCcccccccCCCCCc-EEeeccCCCCCCCcceeec--ccCCHHHHHHHHHHhhcCccCCCCCHHHHHHHHhhceEE
Q psy1917 5 DPLSSLGKVGQLLNSKKQG-VSGESSTNGQTANDIQIQR--YDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQA 81 (212)
Q Consensus 5 ~~g~~fge~~l~~~~~r~~-v~~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~ 81 (212)
-||..|||||+++|+.|++ |-|-.....|+.+...+.. ...-.+....+.++|+.+|+|++++++.+..+++.++..
T Consensus 219 ~~gtvFGELAILynctRtAsV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~ 298 (732)
T KOG0614|consen 219 GAGTVFGELAILYNCTRTASVRALTDVRLWAIDREVFQAIMMRTGLERHEQYMNFLRSVPLFQNLPEELLLKIADVLEEE 298 (732)
T ss_pred CCchhhhHHHHHhCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHH
Confidence 4789999999999999994 6555555567766543332 233334556778999999999999999999999999999
Q ss_pred EecCCCeEEccCCCCCeeEEEecCEEEEEECCE------EEEEeCCCCcchhhhhhhCCCcceEEEEEee
Q psy1917 82 EYKADSYVITEGEAGNDLFVSAEGEFQVIKDGK------ILAVMGPGKAFGELAILYNCTRTASIRGFLT 145 (212)
Q Consensus 82 ~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~------~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~ 145 (212)
.|.+|+.|+++|+.++.||+|.+|.|.|...++ .++.++.||+|||.||+....|+|+++|...
T Consensus 299 ~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~FGE~al~~edvRtAniia~~~ 368 (732)
T KOG0614|consen 299 YYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDYFGERALLGEDVRTANIIAQAP 368 (732)
T ss_pred hhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccchhhHHHhhccCccchhhhccCC
Confidence 999999999999999999999999999998432 6999999999999999999999999999644
No 5
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.69 E-value=3.6e-16 Score=126.99 Aligned_cols=111 Identities=18% Similarity=0.313 Sum_probs=99.8
Q ss_pred HHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhC
Q psy1917 54 KAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYN 133 (212)
Q Consensus 54 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~ 133 (212)
.+.++.+++|..+++++++.++..++.+.|++|++|+++|+.++++|+|.+|.++++...
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~-------------------- 65 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASS-------------------- 65 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcC--------------------
Confidence 357899999999999999999999999999999999999999999999999999998631
Q ss_pred CCcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhhhhccC
Q psy1917 134 CTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQKSA 212 (212)
Q Consensus 134 ~~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~~i~ 212 (212)
+|.. ..+..+.+|++||+.+++.+.++.++++|+++|.++.+++++|.+++
T Consensus 66 ----------------------~~~~------~~i~~~~~g~~~g~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~ 116 (236)
T PRK09392 66 ----------------------QDRE------TTLAILRPVSTFILAAVVLDAPYLMSARTLTRSRVLMIPAELVREAM 116 (236)
T ss_pred ----------------------CCce------EEEEEeCCCchhhhHHHhCCCCCceEEEEcCceEEEEEeHHHHHHHH
Confidence 1211 24789999999999999999999999999999999999999998763
No 6
>KOG0498|consensus
Probab=99.66 E-value=1.2e-16 Score=145.71 Aligned_cols=126 Identities=21% Similarity=0.415 Sum_probs=107.9
Q ss_pred eeecccCCHHHHHHHHHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEE
Q psy1917 39 QIQRYDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAV 118 (212)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~ 118 (212)
.+|.-.+.+-.+....++++++|+|+++|+..+++|+.+++...|++|++|++|||+.+.||||.+|.+++...+
T Consensus 403 ~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~----- 477 (727)
T KOG0498|consen 403 SLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTD----- 477 (727)
T ss_pred hCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEcc-----
Confidence 445445555566677899999999999999999999999999999999999999999999999999999997742
Q ss_pred eCCCCcchhhhhhhCCCcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeee-HhhhhcC-CCceeEEEEec
Q psy1917 119 MGPGKAFGELAILYNCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFG-ELAILYN-CTRTASIRALT 196 (212)
Q Consensus 119 l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fG-e~~ll~~-~~r~~sv~a~~ 196 (212)
.|.+ ..++.|++||+|| |+..... -|.++||+|++
T Consensus 478 -------------------------------------~g~~------~~~~~L~~Gd~~GeEl~~~~~~~p~t~TVralt 514 (727)
T KOG0498|consen 478 -------------------------------------GGGF------FVVAILGPGDFFGEELLTWCLDLPQTRTVRALT 514 (727)
T ss_pred -------------------------------------CCce------EEEEEecCCCccchHHHHHHhcCCCCceeehhh
Confidence 1111 3589999999999 7777766 78899999999
Q ss_pred cEEEEEEchhhhhccC
Q psy1917 197 PCKVWMLDRRVFQKSA 212 (212)
Q Consensus 197 ~~~~~~l~~~~f~~i~ 212 (212)
.|+++.|++++|+.++
T Consensus 515 ~~el~~L~~~dL~~V~ 530 (727)
T KOG0498|consen 515 YCELFRLSADDLKEVL 530 (727)
T ss_pred hhhHHhccHHHHHHHH
Confidence 9999999999998763
No 7
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.63 E-value=1.6e-15 Score=143.27 Aligned_cols=120 Identities=18% Similarity=0.281 Sum_probs=104.1
Q ss_pred CCHHHHHHHHHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 45 KDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 45 ~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
+.+-..+...+.++++++|++++++.+.+++..++.+.|++|+.|+.+||.++.+|||.+|.|++....
T Consensus 364 r~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~----------- 432 (823)
T PLN03192 364 CKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSE----------- 432 (823)
T ss_pred HHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEec-----------
Confidence 333334445567899999999999999999999999999999999999999999999999999997521
Q ss_pred chhhhhhhCCCcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEc
Q psy1917 125 FGELAILYNCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLD 204 (212)
Q Consensus 125 fGe~~ll~~~~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~ 204 (212)
+| +...+..+++|++|||.+++.+.|++++++|.+.|+++.|+
T Consensus 433 -------------------------------~~------~e~~l~~l~~Gd~FGE~~~l~~~p~~~t~ra~~~s~ll~l~ 475 (823)
T PLN03192 433 -------------------------------GE------KERVVGTLGCGDIFGEVGALCCRPQSFTFRTKTLSQLLRLK 475 (823)
T ss_pred -------------------------------CC------cceeeEEccCCCEecchHHhcCCCCCCeEEEcccEEEEEEE
Confidence 11 12358889999999999999999999999999999999999
Q ss_pred hhhhhccC
Q psy1917 205 RRVFQKSA 212 (212)
Q Consensus 205 ~~~f~~i~ 212 (212)
+++|.+++
T Consensus 476 ~~~f~~ll 483 (823)
T PLN03192 476 TSTLIEAM 483 (823)
T ss_pred HHHHHHHH
Confidence 99998764
No 8
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.63 E-value=7.6e-15 Score=104.26 Aligned_cols=103 Identities=30% Similarity=0.607 Sum_probs=91.8
Q ss_pred cCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCcceEEE
Q psy1917 62 FLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIR 141 (212)
Q Consensus 62 lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r~a~v~ 141 (212)
+|..++++.+..++.+++.+.+++|++|+.+|++.+.+|+|.+|.+.++...
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~---------------------------- 52 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLD---------------------------- 52 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEEC----------------------------
Confidence 5789999999999999999999999999999999999999999999998732
Q ss_pred EEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhhhhcc
Q psy1917 142 GFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQKS 211 (212)
Q Consensus 142 a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~~i 211 (212)
.+|+. ..+..+.+|++||..+++.+.++..+++|.++|.+|.+++++|.++
T Consensus 53 -------------~~g~~------~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~ 103 (115)
T cd00038 53 -------------EDGRE------QIVGFLGPGDLFGELALLGNGPRSATVRALTDSELLVLPRSDFRRL 103 (115)
T ss_pred -------------CCCcE------EEEEecCCccCcChHHHhcCCCCCceEEEcCceEEEEEeHHHHHHH
Confidence 12211 3588899999999999988889999999999999999999999875
No 9
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.61 E-value=1e-14 Score=116.16 Aligned_cols=103 Identities=26% Similarity=0.394 Sum_probs=90.1
Q ss_pred CCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCcceEEEE
Q psy1917 63 LKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRG 142 (212)
Q Consensus 63 f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r~a~v~a 142 (212)
=+.+++++++.++..+..+.|++|++|+++|++++++|+|++|.++++..
T Consensus 5 ~~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~------------------------------ 54 (211)
T PRK11753 5 GKPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIK------------------------------ 54 (211)
T ss_pred cCCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEE------------------------------
Confidence 35789999999999999999999999999999999999999999999862
Q ss_pred EeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCC-CceeEEEEeccEEEEEEchhhhhccC
Q psy1917 143 FLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNC-TRTASIRALTPCKVWMLDRRVFQKSA 212 (212)
Q Consensus 143 ~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~-~r~~sv~a~~~~~~~~l~~~~f~~i~ 212 (212)
..+|+.. .+..+++|++||+.+++.+. ++.++++|.++|.++.+++++|.+++
T Consensus 55 -----------~~~g~~~------~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~ 108 (211)
T PRK11753 55 -----------DEEGKEM------ILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLI 108 (211)
T ss_pred -----------CCCCCEE------EEEEcCCCCEEeehhhccCCCCceEEEEEcCcEEEEEEcHHHHHHHH
Confidence 2233332 48889999999999988764 68889999999999999999998763
No 10
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.60 E-value=1.8e-14 Score=126.30 Aligned_cols=110 Identities=20% Similarity=0.267 Sum_probs=97.3
Q ss_pred HHHHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhh
Q psy1917 52 LIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAIL 131 (212)
Q Consensus 52 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll 131 (212)
.+.+.++++++|++|+++++..++.+++.+.|++|++|+++||.++.+|+|++|.+++++..
T Consensus 5 ~~~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~------------------ 66 (413)
T PLN02868 5 SVVEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPA------------------ 66 (413)
T ss_pred HHHHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEEC------------------
Confidence 45678999999999999999999999999999999999999999999999999999998731
Q ss_pred hCCCcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhhhhcc
Q psy1917 132 YNCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQKS 211 (212)
Q Consensus 132 ~~~~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~~i 211 (212)
.+| ...+..+++|++||+. +.+.++.++++|.++|+++.|+++.|..+
T Consensus 67 -----------------------~~g-------e~~l~~l~~Gd~fG~~--l~~~~~~~~~~A~~d~~v~~ip~~~~~~~ 114 (413)
T PLN02868 67 -----------------------EEE-------SRPEFLLKRYDYFGYG--LSGSVHSADVVAVSELTCLVLPHEHCHLL 114 (413)
T ss_pred -----------------------CCC-------cEEEEEeCCCCEeehh--hCCCCcccEEEECCCEEEEEEcHHHHhhh
Confidence 122 1357889999999975 67888999999999999999999999764
No 11
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.60 E-value=1.1e-14 Score=115.06 Aligned_cols=108 Identities=28% Similarity=0.424 Sum_probs=94.3
Q ss_pred hcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCcc
Q psy1917 58 MDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRT 137 (212)
Q Consensus 58 ~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r~ 137 (212)
...+.|..++.+....+......+.+++|++|+++||+++.+|+|.+|.++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~------------------------- 57 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYAN------------------------- 57 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEE-------------------------
Confidence 4556777788888888888999999999999999999999999999999999883
Q ss_pred eEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhhhhccC
Q psy1917 138 ASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQKSA 212 (212)
Q Consensus 138 a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~~i~ 212 (212)
..+|+.. .+.+++||++||+.+++.+.+++++++|++++.+|.++++.|.+++
T Consensus 58 ----------------~~~G~~~------~~~~~~~g~~fg~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 110 (214)
T COG0664 58 ----------------TEDGREI------ILGFLGPGDFFGELALLGGDPRSASAVALTDVEVLEIPRKDFLELL 110 (214)
T ss_pred ----------------CCCCcEE------EEEEecCCchhhhHHHhcCCCccceEEEcceEEEEEecHHHHHHHH
Confidence 2334333 4789999999999999998899999999999999999999998753
No 12
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.58 E-value=1.1e-14 Score=100.01 Aligned_cols=85 Identities=26% Similarity=0.470 Sum_probs=75.1
Q ss_pred EEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeeeeeEEeecceEE
Q psy1917 81 AEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHFNFSVSAEGEFQ 160 (212)
Q Consensus 81 ~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~~~~i~~~g~~~ 160 (212)
++|++|++|+++|++.+.+|+|++|.++++... .+|+..
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~-----------------------------------------~~~~~~ 40 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSIN-----------------------------------------EDGKEQ 40 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEET-----------------------------------------TTSEEE
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEece-----------------------------------------ecceee
Confidence 689999999999999999999999999998732 222222
Q ss_pred EEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhhhhccC
Q psy1917 161 VIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQKSA 212 (212)
Q Consensus 161 ~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~~i~ 212 (212)
.+..+.+|++||+.+++.+.++.++++|.++|.++.|++++|.+++
T Consensus 41 ------~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~ 86 (91)
T PF00027_consen 41 ------IIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRIPREDFLQLL 86 (91)
T ss_dssp ------EEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEEEHHHHHHHH
T ss_pred ------eecceeeeccccceeecCCCccEEEEEEccCEEEEEEeHHHHHHHH
Confidence 4889999999999999999999999999999999999999998864
No 13
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.58 E-value=4.8e-14 Score=100.55 Aligned_cols=103 Identities=31% Similarity=0.581 Sum_probs=89.1
Q ss_pred cCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCcceEEE
Q psy1917 62 FLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIR 141 (212)
Q Consensus 62 lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r~a~v~ 141 (212)
+|.+++++.+..++..+..+.|++|++|+++|++.+.+|+|.+|.++++..+
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~---------------------------- 52 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVL---------------------------- 52 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEEC----------------------------
Confidence 5789999999999999999999999999999999999999999999998731
Q ss_pred EEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhh--cCCCceeEEEEeccEEEEEEchhhhhcc
Q psy1917 142 GFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAIL--YNCTRTASIRALTPCKVWMLDRRVFQKS 211 (212)
Q Consensus 142 a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll--~~~~r~~sv~a~~~~~~~~l~~~~f~~i 211 (212)
.+|. ...+..+.+|++||+.+++ ...+...++.+.++|.++.++.+.|.+.
T Consensus 53 -------------~~g~------~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 105 (120)
T smart00100 53 -------------EDGR------EQILGILGPGDFFGELALLTNSRRAASATAVALELATLLRIDFRDFLQL 105 (120)
T ss_pred -------------CCCc------eEEEEeecCCceechhhhccCCCcccceEEEEEeeEEEEccCHHHHHHH
Confidence 1222 2258889999999999988 3457888999999999999999988764
No 14
>KOG0500|consensus
Probab=99.55 E-value=2.4e-14 Score=123.45 Aligned_cols=123 Identities=17% Similarity=0.371 Sum_probs=103.7
Q ss_pred eecccCCHHHHHHHHHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEe
Q psy1917 40 IQRYDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVM 119 (212)
Q Consensus 40 ~~~~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l 119 (212)
+|...+..-..+--.+.|+++++|+.+.+..+.++...++...|.||++|+++||.++.||||.+|.+.|..++
T Consensus 292 LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dD------ 365 (536)
T KOG0500|consen 292 LPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADD------ 365 (536)
T ss_pred CCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecC------
Confidence 34344444445556789999999999999999999999999999999999999999999999999999998753
Q ss_pred CCCCcchhhhhhhCCCcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhc------CCCceeEEE
Q psy1917 120 GPGKAFGELAILYNCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILY------NCTRTASIR 193 (212)
Q Consensus 120 ~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~------~~~r~~sv~ 193 (212)
.+.....+..|++|||++++. +..|+++|+
T Consensus 366 --------------------------------------------g~t~~~~L~~G~~FGEisIlni~g~~~gNRRtanvr 401 (536)
T KOG0500|consen 366 --------------------------------------------GVTVFVTLKAGSVFGEISILNIKGNKNGNRRTANVR 401 (536)
T ss_pred --------------------------------------------CcEEEEEecCCceeeeeEEEEEcCcccCCcceeeee
Confidence 124567778888888888773 468999999
Q ss_pred EeccEEEEEEchhhhhccC
Q psy1917 194 ALTPCKVWMLDRRVFQKSA 212 (212)
Q Consensus 194 a~~~~~~~~l~~~~f~~i~ 212 (212)
.+.-+.+++|+++|+.+.+
T Consensus 402 SvGYSDlfvLskdDl~~aL 420 (536)
T KOG0500|consen 402 SVGYSDLFVLSKDDLWEAL 420 (536)
T ss_pred eeccceeeEeeHHHHHHHH
Confidence 9999999999999997753
No 15
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.53 E-value=3.9e-14 Score=114.53 Aligned_cols=109 Identities=16% Similarity=0.291 Sum_probs=88.9
Q ss_pred HHHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhh
Q psy1917 53 IKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILY 132 (212)
Q Consensus 53 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~ 132 (212)
+...+.+..+-+-.++ .+++.+..+.|++|++|+++||+++.+|+|.+|.++++.
T Consensus 10 ~~~~~~~~~~~~~~~~----~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~--------------------- 64 (226)
T PRK10402 10 ISHYMSESAFKDCFSF----DVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYA--------------------- 64 (226)
T ss_pred HHHHHHHcChhhcCCH----HHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEE---------------------
Confidence 3344555444333333 477788999999999999999999999999999999987
Q ss_pred CCCcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhhhhccC
Q psy1917 133 NCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQKSA 212 (212)
Q Consensus 133 ~~~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~~i~ 212 (212)
.+.+|+.. .+..+.||++||+.+++.+.++++++.|.++|.++.+++++|.+++
T Consensus 65 --------------------~~~~G~e~------~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~~~~i~~i~~~~~~~ll 118 (226)
T PRK10402 65 --------------------TLANGKVS------LIDFFAAPCFIGEIELIDKDHETKAVQAIEECWCLALPMKDCRPLL 118 (226)
T ss_pred --------------------ECCCCCEe------eeeecCCCCeEEeehhhcCCCCCccEEEeccEEEEEEEHHHHHHHH
Confidence 23444443 3888999999999999988999999999999999999999998753
No 16
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.51 E-value=2.1e-13 Score=110.61 Aligned_cols=108 Identities=14% Similarity=0.135 Sum_probs=89.7
Q ss_pred hhcCccCCCCCHHHHHHHHhhce-EEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCC
Q psy1917 57 IMDNDFLKNLDTLQVKEMVESMH-QAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCT 135 (212)
Q Consensus 57 l~~~~lf~~l~~~~~~~l~~~~~-~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~ 135 (212)
+++.+.|..+++++++.|..... .+.|++|++|+++||+++++|+|.+|.++++..
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~----------------------- 71 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTI----------------------- 71 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEE-----------------------
Confidence 56666677899999999998885 578999999999999999999999999999872
Q ss_pred cceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhhhhccC
Q psy1917 136 RTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQKSA 212 (212)
Q Consensus 136 r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~~i~ 212 (212)
..+|+.. .+.++.||++||+.+++. .+...++.|.+++.++.++++.|.+++
T Consensus 72 ------------------~~~G~e~------i~~~~~~gd~~g~~~~~~-~~~~~~~~a~~~~~i~~ip~~~f~~l~ 123 (235)
T PRK11161 72 ------------------TEQGDEQ------ITGFHLAGDLVGFDAIGS-GQHPSFAQALETSMVCEIPFETLDDLS 123 (235)
T ss_pred ------------------CCCCCEE------EEEeccCCceeccccccC-CCCcceEEEeccEEEEEEEHHHHHHHH
Confidence 2334333 377889999999876644 455678999999999999999998753
No 17
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.41 E-value=1.2e-12 Score=115.11 Aligned_cols=109 Identities=17% Similarity=0.315 Sum_probs=101.1
Q ss_pred HHHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhh
Q psy1917 53 IKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILY 132 (212)
Q Consensus 53 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~ 132 (212)
+.+++..+|.|..|+++++.+|.+.+....|.+|++|+..|.+..++|+|.+|.|++..+
T Consensus 5 ~~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~-------------------- 64 (610)
T COG2905 5 PDQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSD-------------------- 64 (610)
T ss_pred HHHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcC--------------------
Confidence 467899999999999999999999999999999999999999999999999999999874
Q ss_pred CCCcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhhhhccC
Q psy1917 133 NCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQKSA 212 (212)
Q Consensus 133 ~~~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~~i~ 212 (212)
+|+.+..+..|+.||-.+++...+-...+.|.+|+.|+.||++.|.+++
T Consensus 65 -------------------------------~g~v~~~~~~gdlFg~~~l~~~~~~~~~~~aeedsl~y~lp~s~F~ql~ 113 (610)
T COG2905 65 -------------------------------GGEVLDRLAAGDLFGFSSLFTELNKQRYMAAEEDSLCYLLPKSVFMQLM 113 (610)
T ss_pred -------------------------------CCeeeeeeccCccccchhhcccCCCcceeEeeccceEEecCHHHHHHHH
Confidence 3567889999999999999998888888999999999999999998864
No 18
>KOG0499|consensus
Probab=99.41 E-value=3.8e-13 Score=118.26 Aligned_cols=110 Identities=21% Similarity=0.440 Sum_probs=96.6
Q ss_pred HHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhC
Q psy1917 54 KAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYN 133 (212)
Q Consensus 54 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~ 133 (212)
...|.++.+|++++...+..++.++..+.|=+|++|++.||.|+.||||..|+|.|.-..
T Consensus 526 y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp-------------------- 585 (815)
T KOG0499|consen 526 YSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGP-------------------- 585 (815)
T ss_pred hhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCC--------------------
Confidence 356889999999999999999999999999999999999999999999999999996421
Q ss_pred CCcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhh---cCCCceeEEEEeccEEEEEEchhhhhc
Q psy1917 134 CTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAIL---YNCTRTASIRALTPCKVWMLDRRVFQK 210 (212)
Q Consensus 134 ~~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll---~~~~r~~sv~a~~~~~~~~l~~~~f~~ 210 (212)
.+.+++.+|..|..|||+++| .+..|+++|+|..-|.++.|+++++++
T Consensus 586 -----------------------------~~~~Vl~tL~~GsVFGEISLLaigG~nRRTAnV~a~Gf~nLfvL~KkdLne 636 (815)
T KOG0499|consen 586 -----------------------------DGTKVLVTLKAGSVFGEISLLAIGGGNRRTANVVAHGFANLFVLDKKDLNE 636 (815)
T ss_pred -----------------------------CCCEEEEEecccceeeeeeeeeecCCCccchhhhhcccceeeEecHhHHHH
Confidence 122467888888889988887 356899999999999999999999988
Q ss_pred cC
Q psy1917 211 SA 212 (212)
Q Consensus 211 i~ 212 (212)
++
T Consensus 637 il 638 (815)
T KOG0499|consen 637 IL 638 (815)
T ss_pred HH
Confidence 64
No 19
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.38 E-value=4.6e-12 Score=100.30 Aligned_cols=84 Identities=21% Similarity=0.369 Sum_probs=71.4
Q ss_pred hceEEEecCCCeEEccCC--CCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeeeeeEEe
Q psy1917 77 SMHQAEYKADSYVITEGE--AGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHFNFSVS 154 (212)
Q Consensus 77 ~~~~~~~~~g~~I~~~Gd--~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~~~~i~ 154 (212)
.++.+.|++|++|+++|| +++.+|+|++|.++++. ..
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~-----------------------------------------~~ 43 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHT-----------------------------------------VD 43 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEE-----------------------------------------EC
Confidence 457889999999999999 77999999999999987 23
Q ss_pred ecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhhh
Q psy1917 155 AEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVF 208 (212)
Q Consensus 155 ~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f 208 (212)
.+|+.. .+..+.||++||+.++. ..++++++.|.++|.++.|+++.|
T Consensus 44 ~~G~e~------~l~~~~~Gd~~G~~~~~-~~~~~~~~~A~~~~~v~~i~~~~~ 90 (202)
T PRK13918 44 DEGNAL------TLRYVRPGEYFGEEALA-GAERAYFAEAVTDSRIDVLNPALM 90 (202)
T ss_pred CCCCEE------EEEEecCCCeechHHhc-CCCCCceEEEcCceEEEEEEHHHc
Confidence 445444 48889999999997654 578899999999999999998766
No 20
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.30 E-value=1.9e-11 Score=99.12 Aligned_cols=89 Identities=22% Similarity=0.330 Sum_probs=74.7
Q ss_pred HHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeeeeeEE
Q psy1917 74 MVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHFNFSV 153 (212)
Q Consensus 74 l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~~~~i 153 (212)
+......+.|++|++|+++||+++++|+|++|.++++. .
T Consensus 34 ~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~-----------------------------------------~ 72 (230)
T PRK09391 34 AGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYR-----------------------------------------L 72 (230)
T ss_pred ccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEE-----------------------------------------E
Confidence 45567899999999999999999999999999999987 2
Q ss_pred eecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhhhhccC
Q psy1917 154 SAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQKSA 212 (212)
Q Consensus 154 ~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~~i~ 212 (212)
..+|+.. .+..+.+|++||+. ...++.+++.|+++|.++.+++++|.+++
T Consensus 73 ~~~G~e~------i~~~~~~Gd~fG~~---~~~~~~~~~~A~~ds~v~~i~~~~f~~l~ 122 (230)
T PRK09391 73 LSDGRRQ------IGAFHLPGDVFGLE---SGSTHRFTAEAIVDTTVRLIKRRSLEQAA 122 (230)
T ss_pred CCCCcEE------EEEEecCCceeccc---CCCcCCeEEEEcCceEEEEEEHHHHHHHH
Confidence 3344333 47788999999963 45678899999999999999999998764
No 21
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.28 E-value=1.3e-11 Score=96.88 Aligned_cols=80 Identities=15% Similarity=0.256 Sum_probs=67.9
Q ss_pred CCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeeeeeEEeecceEEEEECC
Q psy1917 86 DSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDG 165 (212)
Q Consensus 86 g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~ 165 (212)
|+.|+++||+.+++|+|++|.|+++.. ..+|+..
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~-----------------------------------------~~~G~e~----- 34 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRV-----------------------------------------YESGEEI----- 34 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEe-----------------------------------------CCCCcEe-----
Confidence 789999999999999999999999872 3344433
Q ss_pred eEEEEeCCCCeeeHhhhhcCCC--ceeEEEEeccEEEEEEchhhhhccC
Q psy1917 166 KILAVMGPGKAFGELAILYNCT--RTASIRALTPCKVWMLDRRVFQKSA 212 (212)
Q Consensus 166 ~~~~~l~~G~~fGe~~ll~~~~--r~~sv~a~~~~~~~~l~~~~f~~i~ 212 (212)
.+..++||++||+.+++.+.+ +.+++.|.++|.++.+++++|.+++
T Consensus 35 -~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~ 82 (193)
T TIGR03697 35 -TVALLRENSVFGVLSLITGHRSDRFYHAVAFTRVELLAVPIEQVEKAI 82 (193)
T ss_pred -eeEEccCCCEeeeeeeccCCCCccceEEEEecceEEEEeeHHHHHHHH
Confidence 388999999999998887764 4578999999999999999998763
No 22
>KOG0501|consensus
Probab=98.88 E-value=9.7e-10 Score=97.14 Aligned_cols=107 Identities=21% Similarity=0.370 Sum_probs=91.2
Q ss_pred HHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhC
Q psy1917 54 KAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYN 133 (212)
Q Consensus 54 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~ 133 (212)
.+.+..+|-|+-.++.-++.|+..++.....+|+.|++.|+..|.+.||.+|.++|..++
T Consensus 547 RKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDD-------------------- 606 (971)
T KOG0501|consen 547 RKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDD-------------------- 606 (971)
T ss_pred hhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecC--------------------
Confidence 567889999999999999999999999999999999999999999999999999997654
Q ss_pred CCcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcC--CCceeEEEEeccEEEEEEchhhhhcc
Q psy1917 134 CTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYN--CTRTASIRALTPCKVWMLDRRVFQKS 211 (212)
Q Consensus 134 ~~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~--~~r~~sv~a~~~~~~~~l~~~~f~~i 211 (212)
+++++|++||.||+.---.+ ....++|+|++.|.+..|.++.+.++
T Consensus 607 --------------------------------EVVAILGKGDVFGD~FWK~~t~~qs~ANVRALTYcDLH~IKrd~Ll~V 654 (971)
T KOG0501|consen 607 --------------------------------EVVAILGKGDVFGDEFWKENTLGQSAANVRALTYCDLHMIKRDKLLKV 654 (971)
T ss_pred --------------------------------cEEEEeecCccchhHHhhhhhhhhhhhhhhhhhhhhhhHHhHHHHHHH
Confidence 46778888888887522222 24568999999999999999988765
Q ss_pred C
Q psy1917 212 A 212 (212)
Q Consensus 212 ~ 212 (212)
+
T Consensus 655 L 655 (971)
T KOG0501|consen 655 L 655 (971)
T ss_pred H
Confidence 3
No 23
>KOG2968|consensus
Probab=98.74 E-value=4e-08 Score=90.59 Aligned_cols=127 Identities=24% Similarity=0.385 Sum_probs=103.4
Q ss_pred cCCCeEEccCCCCCeeEEEecCEEEEEEC-----------CEEEEEeCCCCcchhhhhhhCCCcceEEEEEeeeee----
Q psy1917 84 KADSYVITEGEAGNDLFVSAEGEFQVIKD-----------GKILAVMGPGKAFGELAILYNCTRTASIRGFLTVLH---- 148 (212)
Q Consensus 84 ~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~-----------~~~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~---- 148 (212)
+..+.|.++|+....+|+|..|.+.++.. +..+..+++|++||-++++.|.+..-+++|..++.-
T Consensus 392 keitiiv~q~a~~~gl~~ii~g~l~v~~sm~~~s~~~~~~~~~~f~v~pG~ivgyla~lt~e~S~~tirArsdt~v~~is 471 (1158)
T KOG2968|consen 392 KEITIIVEQGARDVGLYYIIKGSLSVYQSMYDVSGNLVLAGMLLFVVGPGEIVGYLAILTNEPSFITIRARSDTRVLFIS 471 (1158)
T ss_pred cceEEEEecccccceeeEEeecceeeeehhcccccccccccceEEEecCCceechhhhhcCCcceEEEEEecceEEEEee
Confidence 33455799999999999999999987741 236888999999999999999999999999666542
Q ss_pred --------------------------------------e-----------------eeEEeecceEEEEEC----Ce-EE
Q psy1917 149 --------------------------------------F-----------------NFSVSAEGEFQVIKD----GK-IL 168 (212)
Q Consensus 149 --------------------------------------~-----------------~~~i~~~g~~~~~~~----~~-~~ 168 (212)
| ..|+.-+|+...+.+ .+ .+
T Consensus 472 rs~l~~~~~~~p~I~L~ia~svl~~lsp~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~ 551 (1158)
T KOG2968|consen 472 RSDLERFLDAEPLIYLRIAHSVLRRLSPFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIV 551 (1158)
T ss_pred HHHHHHHHHhCceEEEehhhHHHHhcCHHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhh
Confidence 0 235556666544433 22 67
Q ss_pred EEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhhhhc
Q psy1917 169 AVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQK 210 (212)
Q Consensus 169 ~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~~ 210 (212)
..++.||.+|+.+++.+.+|..||.|+-++++.+||...|.-
T Consensus 552 ~EygrGd~iG~~E~lt~~~R~tTv~AvRdSelariPe~l~~~ 593 (1158)
T KOG2968|consen 552 GEYGRGDLIGEVEMLTKQPRATTVMAVRDSELARIPEGLLNF 593 (1158)
T ss_pred hhccCcceeehhHHhhcCCccceEEEEeehhhhhccHHHHHH
Confidence 889999999999999999999999999999999999887754
No 24
>KOG2968|consensus
Probab=98.42 E-value=2.7e-07 Score=85.31 Aligned_cols=128 Identities=13% Similarity=0.254 Sum_probs=92.1
Q ss_pred CCCCCCcccccccCCCCC-cEEeeccCCCCCCCcceeecccCCHHHHHHHHHHhhcCccC---------CCCCHHHHHHH
Q psy1917 5 DPLSSLGKVGQLLNSKKQ-GVSGESSTNGQTANDIQIQRYDKDFRSKQLIKAAIMDNDFL---------KNLDTLQVKEM 74 (212)
Q Consensus 5 ~~g~~fge~~l~~~~~r~-~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lf---------~~l~~~~~~~l 74 (212)
.||..+|-++++.+.+-- .+.|.+.+.. -...+ ..+..++...|+. +.++ ..+.++
T Consensus 439 ~pG~ivgyla~lt~e~S~~tirArsdt~v--------~~isr-----s~l~~~~~~~p~I~L~ia~svl~~ls-p~lr~~ 504 (1158)
T KOG2968|consen 439 GPGEIVGYLAILTNEPSFITIRARSDTRV--------LFISR-----SDLERFLDAEPLIYLRIAHSVLRRLS-PFLRKL 504 (1158)
T ss_pred cCCceechhhhhcCCcceEEEEEecceEE--------EEeeH-----HHHHHHHHhCceEEEehhhHHHHhcC-HHHhhh
Confidence 589999999999987654 3444442211 11111 1133444444421 1222 344556
Q ss_pred HhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEEC----C-EEEEEeCCCCcchhhhhhhCCCcceEEEEEeee
Q psy1917 75 VESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKD----G-KILAVMGPGKAFGELAILYNCTRTASIRGFLTV 146 (212)
Q Consensus 75 ~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~----~-~~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~ 146 (212)
-.++.+....+|+.+++|||.+|.+|+|++|.++-... . +.+..++.||.+|++..+.+.+|..|+.|+-+.
T Consensus 505 D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~lt~~~R~tTv~AvRdS 581 (1158)
T KOG2968|consen 505 DFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEMLTKQPRATTVMAVRDS 581 (1158)
T ss_pred hhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHHhhcCCccceEEEEeeh
Confidence 66789999999999999999999999999999997654 2 278899999999999999999999999996433
No 25
>KOG3542|consensus
Probab=97.90 E-value=1.3e-05 Score=72.65 Aligned_cols=75 Identities=17% Similarity=0.156 Sum_probs=65.8
Q ss_pred eeecccCCHHHHHHHHHHhhcCccCCCCCHHHHHHHHhhceEEEe-cCCCeEEccCCCCCeeEEEecCEEEEEECC
Q psy1917 39 QIQRYDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEY-KADSYVITEGEAGNDLFVSAEGEFQVIKDG 113 (212)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~-~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~ 113 (212)
++....+++++.+++++++...|-|.+++-...++||..|....+ .+|.+|...|++-|.+|+|+.|.|+|..++
T Consensus 265 EKeP~drtddDieqLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~Pd 340 (1283)
T KOG3542|consen 265 EKEPSDRTDDDIEQLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPD 340 (1283)
T ss_pred hcCCcccchHHHHHHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCC
Confidence 344567889999999999999999999999999999998854444 579999999999999999999999998854
No 26
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.59 E-value=0.00083 Score=53.37 Aligned_cols=89 Identities=13% Similarity=0.170 Sum_probs=67.2
Q ss_pred HHHHhhceEEEecCCCeE-EccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeeee
Q psy1917 72 KEMVESMHQAEYKADSYV-ITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHFN 150 (212)
Q Consensus 72 ~~l~~~~~~~~~~~g~~I-~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~~ 150 (212)
+.+..+.+..++++|..+ +........+|+|++|.+.+.+.
T Consensus 16 ~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr~-------------------------------------- 57 (207)
T PRK11832 16 KCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRRE-------------------------------------- 57 (207)
T ss_pred HHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEec--------------------------------------
Confidence 344555689999999997 54444446799999999999542
Q ss_pred eEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhhhhcc
Q psy1917 151 FSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQKS 211 (212)
Q Consensus 151 ~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~~i 211 (212)
|+-.+.+...-..||-...+......+.++|.++|+.+.++.++|.++
T Consensus 58 -------------d~ll~~t~~aP~IlGl~~~~~~~~~~~~l~ae~~c~~~~i~~~~~~~i 105 (207)
T PRK11832 58 -------------ENVLIGITQAPYIMGLADGLMKNDIPYKLISEGNCTGYHLPAKQTITL 105 (207)
T ss_pred -------------CCeEEEeccCCeEeecccccCCCCceEEEEEcCccEEEEeeHHHHHHH
Confidence 333455666667899766566666678899999999999999999875
No 27
>KOG3542|consensus
Probab=97.26 E-value=0.00095 Score=60.91 Aligned_cols=70 Identities=10% Similarity=0.108 Sum_probs=62.5
Q ss_pred eecccCCHHHHHHHHHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEE
Q psy1917 40 IQRYDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQV 109 (212)
Q Consensus 40 ~~~~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v 109 (212)
.+...+++.++.-..+.|+....|.+|=...++.++....+.+++...++|+.|+.+.++||+++|.|-|
T Consensus 22 k~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v 91 (1283)
T KOG3542|consen 22 KPPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFV 91 (1283)
T ss_pred CCcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEe
Confidence 4556667777776677899999999999999999999999999999999999999999999999999876
No 28
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=97.15 E-value=0.0079 Score=45.23 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=75.3
Q ss_pred cCCC--CCHHHHHHHHhh-ceEEEecCCCeEEccCCC-CCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCcc
Q psy1917 62 FLKN--LDTLQVKEMVES-MHQAEYKADSYVITEGEA-GNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRT 137 (212)
Q Consensus 62 lf~~--l~~~~~~~l~~~-~~~~~~~~g~~I~~~Gd~-~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r~ 137 (212)
+|+. ++..+.+.|+.+ .+.....+|+.-.-+|.. .|.+-++++|.+.|+.++..+..+.+.++
T Consensus 9 lF~Pl~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g~fLH~I~p~qF------------- 75 (153)
T PF04831_consen 9 LFQPLKVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDGRFLHYIYPYQF------------- 75 (153)
T ss_pred hccCcCCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEECCEeeEeeccccc-------------
Confidence 5554 589999999988 788999999999888765 56899999999999987765555555422
Q ss_pred eEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhhhhcc
Q psy1917 138 ASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQKS 211 (212)
Q Consensus 138 a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~~i 211 (212)
+..-++++-.. -.+...+.|+.|.++|..+..+|+.+..+
T Consensus 76 ---------------------------------lDSPEW~s~~~-s~~~~FQVTitA~~~Cryl~W~R~kL~~~ 115 (153)
T PF04831_consen 76 ---------------------------------LDSPEWESLRP-SEDDKFQVTITAEEDCRYLCWPREKLYLL 115 (153)
T ss_pred ---------------------------------ccChhhhcccc-CCCCeEEEEEEEcCCcEEEEEEHHHHHHH
Confidence 12222232110 12346789999999999999999987654
No 29
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=92.21 E-value=0.23 Score=38.59 Aligned_cols=34 Identities=41% Similarity=0.588 Sum_probs=29.6
Q ss_pred EEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 116 LAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 116 ~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
+..+++|++||+++++.+.++.++++|.+++..+
T Consensus 66 ~~~~~~g~~fg~~~l~~~~~~~~~~~a~~~~~~~ 99 (214)
T COG0664 66 LGFLGPGDFFGELALLGGDPRSASAVALTDVEVL 99 (214)
T ss_pred EEEecCCchhhhHHHhcCCCccceEEEcceEEEE
Confidence 4468999999999999999999999998886544
No 30
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=90.41 E-value=0.29 Score=32.40 Aligned_cols=35 Identities=23% Similarity=0.455 Sum_probs=30.1
Q ss_pred EEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 115 ILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 115 ~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
.+..+.+|++||+.+++.+.++..+++|.+++..+
T Consensus 41 ~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~ 75 (91)
T PF00027_consen 41 IIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVL 75 (91)
T ss_dssp EEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEE
T ss_pred eecceeeeccccceeecCCCccEEEEEEccCEEEE
Confidence 45667899999999999999999999998777554
No 31
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=89.76 E-value=0.85 Score=29.01 Aligned_cols=43 Identities=21% Similarity=0.365 Sum_probs=31.6
Q ss_pred EEecCCCeEEccCCCCC-eeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 81 AEYKADSYVITEGEAGN-DLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 81 ~~~~~g~~I~~~Gd~~~-~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
.++++|+..-..-.+.. .+++|++|++.+..+++ ...+++|+.
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~~-~~~l~~Gd~ 46 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVDGE-RVELKPGDA 46 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEETTE-EEEEETTEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEEccE-EeEccCCEE
Confidence 56778887655555555 89999999999997664 666677653
No 32
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=85.07 E-value=0.9 Score=43.69 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=30.9
Q ss_pred EEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 115 ILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 115 ~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
.+..+++|++|||++++.+.|+.++++|.+.+..+
T Consensus 438 ~l~~l~~Gd~FGE~~~l~~~p~~~t~ra~~~s~ll 472 (823)
T PLN03192 438 VVGTLGCGDIFGEVGALCCRPQSFTFRTKTLSQLL 472 (823)
T ss_pred eeEEccCCCEecchHHhcCCCCCCeEEEcccEEEE
Confidence 45678999999999999999999999998877654
No 33
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=82.93 E-value=4 Score=29.82 Aligned_cols=47 Identities=17% Similarity=0.112 Sum_probs=33.1
Q ss_pred ceEEEecCCCeEEccCCCCCeeEEEecCEEEEE-ECCEEEEEeCCCCc
Q psy1917 78 MHQAEYKADSYVITEGEAGNDLFVSAEGEFQVI-KDGKILAVMGPGKA 124 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~-~~~~~~~~l~~g~~ 124 (212)
+....+++|+.+-..-.....+++|++|++.+. .++.....|++||+
T Consensus 37 ~~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~~~~L~aGD~ 84 (125)
T PRK13290 37 FHETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGEVHPIRPGTM 84 (125)
T ss_pred EEEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCEEEEeCCCeE
Confidence 355688888755332111236999999999998 65457788999976
No 34
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=80.82 E-value=4.3 Score=29.45 Aligned_cols=47 Identities=13% Similarity=0.138 Sum_probs=40.0
Q ss_pred ceEEEecCCCeEEccCCC-CCeeEEEecCEEEEEECCEEEEEeCCCCcc
Q psy1917 78 MHQAEYKADSYVITEGEA-GNDLFVSAEGEFQVIKDGKILAVMGPGKAF 125 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~-~~~~yiI~~G~v~v~~~~~~~~~l~~g~~f 125 (212)
+....+++|+.+-..-.+ .+...+|++|.+.+..+ .....+++||++
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~-g~~~~l~~Gd~i 92 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE-GEKKELKAGDVI 92 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec-CCceEecCCCEE
Confidence 468899999999887776 77899999999999998 678888888864
No 35
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=80.75 E-value=1.9 Score=34.49 Aligned_cols=55 Identities=16% Similarity=0.375 Sum_probs=38.9
Q ss_pred CeEEccCCCCCeeEEE-ecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 87 SYVITEGEAGNDLFVS-AEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 87 ~~I~~~Gd~~~~~yiI-~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
-.++..|.. .+|.+ .+|.-. .+..+.+|++||+.+++.+.+..+++.|.+++..+
T Consensus 52 ~y~V~~G~v--~v~~~~~~G~e~------~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~~~~i~ 107 (226)
T PRK10402 52 LFYLTRGRA--KLYATLANGKVS------LIDFFAAPCFIGEIELIDKDHETKAVQAIEECWCL 107 (226)
T ss_pred EEEEEeCEE--EEEEECCCCCEe------eeeecCCCCeEEeehhhcCCCCCccEEEeccEEEE
Confidence 356677754 23333 345422 34567899999999999999999999998887643
No 36
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=79.78 E-value=3.1 Score=33.31 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=30.2
Q ss_pred EEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 115 ILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 115 ~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
.+..+.+|++||+.+++.+.+..++++|.+++..+
T Consensus 71 ~i~~~~~g~~~g~~~~~~~~~~~~~~~A~~~~~~~ 105 (236)
T PRK09392 71 TLAILRPVSTFILAAVVLDAPYLMSARTLTRSRVL 105 (236)
T ss_pred EEEEeCCCchhhhHHHhCCCCCceEEEEcCceEEE
Confidence 34667899999999999999999999998888654
No 37
>KOG0499|consensus
Probab=79.55 E-value=1 Score=41.27 Aligned_cols=37 Identities=27% Similarity=0.388 Sum_probs=28.6
Q ss_pred CCEEEEEeCCCCcchhhhhhh---CCCcceEEEEEeeeee
Q psy1917 112 DGKILAVMGPGKAFGELAILY---NCTRTASIRGFLTVLH 148 (212)
Q Consensus 112 ~~~~~~~l~~g~~fGe~~ll~---~~~r~a~v~a~~~~~~ 148 (212)
..+.+.+|+.|++|||+.||- |..|||+|+|.-.+-.
T Consensus 587 ~~~Vl~tL~~GsVFGEISLLaigG~nRRTAnV~a~Gf~nL 626 (815)
T KOG0499|consen 587 GTKVLVTLKAGSVFGEISLLAIGGGNRRTANVVAHGFANL 626 (815)
T ss_pred CCEEEEEecccceeeeeeeeeecCCCccchhhhhccccee
Confidence 344567889999999999874 5788999999655543
No 38
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=78.81 E-value=22 Score=25.76 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=34.4
Q ss_pred hceEEEecCCCeE-EccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 77 SMHQAEYKADSYV-ITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 77 ~~~~~~~~~g~~I-~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
......+++|+-+ .+.-...+.+|+|++|...+..++ ....+++|++
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~-~~~~v~~gd~ 84 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGG-EEVEVKAGDS 84 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECC-EEEEecCCCE
Confidence 3467777887775 555555789999999999999875 4555666654
No 39
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=77.91 E-value=8.3 Score=26.20 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=19.3
Q ss_pred eeEEEecCEEEEEECCEEEEEeCCCCcc
Q psy1917 98 DLFVSAEGEFQVIKDGKILAVMGPGKAF 125 (212)
Q Consensus 98 ~~yiI~~G~v~v~~~~~~~~~l~~g~~f 125 (212)
..|+|.+|.|+|..++.. ..+++|++|
T Consensus 35 ~vF~V~~G~v~Vti~~~~-f~v~~G~~F 61 (85)
T PF11699_consen 35 MVFYVIKGKVEVTIHETS-FVVTKGGSF 61 (85)
T ss_dssp EEEEEEESEEEEEETTEE-EEEETT-EE
T ss_pred EEEEEEeCEEEEEEcCcE-EEEeCCCEE
Confidence 588999999999997643 336666654
No 40
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=77.11 E-value=3.9 Score=26.80 Aligned_cols=29 Identities=24% Similarity=0.491 Sum_probs=23.6
Q ss_pred CeeEEEecCEEEEEECCEEEEEeCCCCcc
Q psy1917 97 NDLFVSAEGEFQVIKDGKILAVMGPGKAF 125 (212)
Q Consensus 97 ~~~yiI~~G~v~v~~~~~~~~~l~~g~~f 125 (212)
+.+.+|++|.+.+..++.....+++||.|
T Consensus 26 ~E~~~vleG~v~it~~~G~~~~~~aGD~~ 54 (74)
T PF05899_consen 26 DEFFYVLEGEVTITDEDGETVTFKAGDAF 54 (74)
T ss_dssp EEEEEEEEEEEEEEETTTEEEEEETTEEE
T ss_pred CEEEEEEEeEEEEEECCCCEEEEcCCcEE
Confidence 67889999999999966566888888753
No 41
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=76.23 E-value=4.9 Score=27.11 Aligned_cols=36 Identities=39% Similarity=0.656 Sum_probs=29.7
Q ss_pred EEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeeee
Q psy1917 115 ILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHFN 150 (212)
Q Consensus 115 ~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~~ 150 (212)
.+..+.+|++||+..++.+.++..+++|.+++..+.
T Consensus 59 ~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~ 94 (115)
T cd00038 59 IVGFLGPGDLFGELALLGNGPRSATVRALTDSELLV 94 (115)
T ss_pred EEEecCCccCcChHHHhcCCCCCceEEEcCceEEEE
Confidence 455678999999999998889999999987776553
No 42
>KOG0498|consensus
Probab=75.88 E-value=1.9 Score=40.80 Aligned_cols=34 Identities=29% Similarity=0.523 Sum_probs=29.4
Q ss_pred EEEEeCCCCcch-hhhhhhC-CCcceEEEEEeeeee
Q psy1917 115 ILAVMGPGKAFG-ELAILYN-CTRTASIRGFLTVLH 148 (212)
Q Consensus 115 ~~~~l~~g~~fG-e~~ll~~-~~r~a~v~a~~~~~~ 148 (212)
.+..|++||+|| |+...-. .|+++||+|.+.|..
T Consensus 483 ~~~~L~~Gd~~GeEl~~~~~~~p~t~TVralt~~el 518 (727)
T KOG0498|consen 483 VVAILGPGDFFGEELLTWCLDLPQTRTVRALTYCEL 518 (727)
T ss_pred EEEEecCCCccchHHHHHHhcCCCCceeehhhhhhH
Confidence 345689999999 8888888 899999999988864
No 43
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=71.94 E-value=5.4 Score=31.12 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=27.9
Q ss_pred EEEEeCCCCcchhhhhhhCC-CcceEEEEEeeeeee
Q psy1917 115 ILAVMGPGKAFGELAILYNC-TRTASIRGFLTVLHF 149 (212)
Q Consensus 115 ~~~~l~~g~~fGe~~ll~~~-~r~a~v~a~~~~~~~ 149 (212)
.+..+.+|++||+.+++.+. +...+++|.+++..+
T Consensus 62 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~ 97 (211)
T PRK11753 62 ILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVA 97 (211)
T ss_pred EEEEcCCCCEEeehhhccCCCCceEEEEEcCcEEEE
Confidence 34567899999999999875 577899998777653
No 44
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=70.99 E-value=19 Score=29.31 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=28.9
Q ss_pred ceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECC
Q psy1917 78 MHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDG 113 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~ 113 (212)
+...+.++|+..-..-..-+.+.+++.|.+.|...+
T Consensus 31 F~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~~g 66 (270)
T COG3718 31 FRLLRLAAGESATEETGDRERCLVLVTGKATVSAHG 66 (270)
T ss_pred EEEEEccCCCcccccCCCceEEEEEEeeeEEEeecc
Confidence 567778889988777666778899999999998754
No 45
>KOG0500|consensus
Probab=70.35 E-value=2.6 Score=37.80 Aligned_cols=46 Identities=37% Similarity=0.669 Sum_probs=31.5
Q ss_pred eEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhh------CCCcceEEEEE
Q psy1917 88 YVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILY------NCTRTASIRGF 143 (212)
Q Consensus 88 ~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~------~~~r~a~v~a~ 143 (212)
+|+++|- +-+|-+-.+.+. ..+++|++|||+.+++ +.+|+|+|+++
T Consensus 352 yIVk~G~----L~Vv~dDg~t~~------~~L~~G~~FGEisIlni~g~~~gNRRtanvrSv 403 (536)
T KOG0500|consen 352 YIVKEGK----LAVVADDGVTVF------VTLKAGSVFGEISILNIKGNKNGNRRTANVRSV 403 (536)
T ss_pred EEEEccE----EEEEecCCcEEE------EEecCCceeeeeEEEEEcCcccCCcceeeeeee
Confidence 4666664 344433333333 2578999999999885 67899999974
No 46
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=69.98 E-value=7.5 Score=30.10 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=26.4
Q ss_pred EEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 115 ILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 115 ~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
.+..+.+|++||+.++. +.++..++.|.+++..+
T Consensus 50 ~l~~~~~Gd~~G~~~~~-~~~~~~~~~A~~~~~v~ 83 (202)
T PRK13918 50 TLRYVRPGEYFGEEALA-GAERAYFAEAVTDSRID 83 (202)
T ss_pred EEEEecCCCeechHHhc-CCCCCceEEEcCceEEE
Confidence 45567999999997654 67888899998777654
No 47
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=68.82 E-value=48 Score=25.02 Aligned_cols=75 Identities=15% Similarity=0.206 Sum_probs=50.1
Q ss_pred ceEEEecCCCeEEcc-CCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeeeeeEEeec
Q psy1917 78 MHQAEYKADSYVITE-GEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHFNFSVSAE 156 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~-Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~~~~i~~~ 156 (212)
.+...+.+|..+-.| -...+...+|++|...+..++ ....+++|+.+ -++.
T Consensus 65 vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~-~~~~~~~g~sv---------------------------~Ip~ 116 (151)
T PF01050_consen 65 VKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDD-EEFTLKEGDSV---------------------------YIPR 116 (151)
T ss_pred EEEEEEcCCCccceeeecccccEEEEEeCeEEEEECC-EEEEEcCCCEE---------------------------EECC
Confidence 467778888888444 555567889999999999865 45566777541 2455
Q ss_pred ceEEEEEC-Ce---EEEEeCCCCeeeHh
Q psy1917 157 GEFQVIKD-GK---ILAVMGPGKAFGEL 180 (212)
Q Consensus 157 g~~~~~~~-~~---~~~~l~~G~~fGe~ 180 (212)
|....+.+ |. .+-...-|++++|-
T Consensus 117 g~~H~i~n~g~~~L~~IEVq~G~~l~ed 144 (151)
T PF01050_consen 117 GAKHRIENPGKTPLEIIEVQTGEYLGED 144 (151)
T ss_pred CCEEEEECCCCcCcEEEEEecCCCCCcc
Confidence 65555554 22 56667778887764
No 48
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=67.02 E-value=7 Score=29.94 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=25.9
Q ss_pred EEEeCCCCcchhhhhhhCCC--cceEEEEEeeeee
Q psy1917 116 LAVMGPGKAFGELAILYNCT--RTASIRGFLTVLH 148 (212)
Q Consensus 116 ~~~l~~g~~fGe~~ll~~~~--r~a~v~a~~~~~~ 148 (212)
+..+.+|++||+.+++.+.+ +..++.|.+++..
T Consensus 36 l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v 70 (193)
T TIGR03697 36 VALLRENSVFGVLSLITGHRSDRFYHAVAFTRVEL 70 (193)
T ss_pred eEEccCCCEeeeeeeccCCCCccceEEEEecceEE
Confidence 55688999999999998864 4577888777754
No 49
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=66.28 E-value=12 Score=25.28 Aligned_cols=33 Identities=36% Similarity=0.604 Sum_probs=23.6
Q ss_pred EEEEeCCCCcchhhhhhh--CCCcceEEEEEeeee
Q psy1917 115 ILAVMGPGKAFGELAILY--NCTRTASIRGFLTVL 147 (212)
Q Consensus 115 ~~~~l~~g~~fGe~~ll~--~~~r~a~v~a~~~~~ 147 (212)
.+..+.+|++||+..++. ..+...++.+.+.+.
T Consensus 59 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 93 (120)
T smart00100 59 ILGILGPGDFFGELALLTNSRRAASATAVALELAT 93 (120)
T ss_pred EEEeecCCceechhhhccCCCcccceEEEEEeeEE
Confidence 455678999999999993 355666777655443
No 50
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=63.03 E-value=22 Score=26.25 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=34.1
Q ss_pred hceEEEecCCCeEEccCCC-CCeeEEEecCEEEEEECCE-----EEEEeCCCCc
Q psy1917 77 SMHQAEYKADSYVITEGEA-GNDLFVSAEGEFQVIKDGK-----ILAVMGPGKA 124 (212)
Q Consensus 77 ~~~~~~~~~g~~I~~~Gd~-~~~~yiI~~G~v~v~~~~~-----~~~~l~~g~~ 124 (212)
.+....+++|...-..-.. .+.+++|++|...+...++ ....+++||+
T Consensus 31 ~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~ 84 (146)
T smart00835 31 SAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDV 84 (146)
T ss_pred EEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCE
Confidence 3456677888876554432 5689999999999987432 3677888875
No 51
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=59.47 E-value=68 Score=28.84 Aligned_cols=46 Identities=7% Similarity=0.119 Sum_probs=30.7
Q ss_pred ceEEEecCCCeEE-ccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 78 MHQAEYKADSYVI-TEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 78 ~~~~~~~~g~~I~-~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
+....+++|..+= +.....+..++|++|++.+..+++ ...+++|++
T Consensus 378 ~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg~-~~~l~~GDs 424 (468)
T TIGR01479 378 VKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGDE-TLLLTENES 424 (468)
T ss_pred EEEEEECCCCccCccccCCCceEEEEEeeEEEEEECCE-EEEecCCCE
Confidence 3566778887542 222223456689999999998775 457788875
No 52
>PRK11171 hypothetical protein; Provisional
Probab=56.48 E-value=49 Score=27.37 Aligned_cols=47 Identities=9% Similarity=0.012 Sum_probs=37.5
Q ss_pred hceEEEecCCCeEEc-cCCCCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 77 SMHQAEYKADSYVIT-EGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 77 ~~~~~~~~~g~~I~~-~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
.+....+++|..+-. ........++|++|+..+..++ ....+++||+
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~~-~~~~l~~GD~ 232 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRLNN-DWVEVEAGDF 232 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEECC-EEEEeCCCCE
Confidence 567788999998865 4566668999999999998754 6777888875
No 53
>PRK11171 hypothetical protein; Provisional
Probab=55.31 E-value=99 Score=25.53 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=32.2
Q ss_pred ceEEEecCCCeEEccCC--CCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 78 MHQAEYKADSYVITEGE--AGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd--~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
+....+++|...-.... ..+.+++|++|++.+..++ ....|.+||+
T Consensus 63 ~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~g-~~~~L~~GDs 110 (266)
T PRK11171 63 QYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLEG-KTHALSEGGY 110 (266)
T ss_pred EEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEECC-EEEEECCCCE
Confidence 45677888775433322 2357999999999999865 4567777765
No 54
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=53.90 E-value=40 Score=24.31 Aligned_cols=42 Identities=24% Similarity=0.387 Sum_probs=31.1
Q ss_pred EecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcc
Q psy1917 82 EYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAF 125 (212)
Q Consensus 82 ~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~f 125 (212)
...+|..=..-++ +.+.-|++|.+.+..++.....+++||.|
T Consensus 51 e~TpG~~r~~y~~--~E~chil~G~v~~T~d~Ge~v~~~aGD~~ 92 (116)
T COG3450 51 ECTPGKFRVTYDE--DEFCHILEGRVEVTPDGGEPVEVRAGDSF 92 (116)
T ss_pred EecCccceEEccc--ceEEEEEeeEEEEECCCCeEEEEcCCCEE
Confidence 4445555444444 56778899999999988888899999863
No 55
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=52.37 E-value=35 Score=26.60 Aligned_cols=41 Identities=22% Similarity=0.382 Sum_probs=29.3
Q ss_pred cCC-CeEEccCCCCCeeEEEecCEEEEEE--CCE-EEEEeCCCCcc
Q psy1917 84 KAD-SYVITEGEAGNDLFVSAEGEFQVIK--DGK-ILAVMGPGKAF 125 (212)
Q Consensus 84 ~~g-~~I~~~Gd~~~~~yiI~~G~v~v~~--~~~-~~~~l~~g~~f 125 (212)
-+| ..-++- ++.+.+|++++|.+.+.. +++ ....+++|++|
T Consensus 42 Gpn~r~d~H~-~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~f 86 (177)
T PRK13264 42 GPNARTDFHY-DPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMF 86 (177)
T ss_pred cCCccccccc-CCCceEEEEECCeEEEEEEcCCceeeEEECCCCEE
Confidence 344 344454 567889999999999887 443 57788888765
No 56
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A.
Probab=52.27 E-value=23 Score=28.61 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=30.7
Q ss_pred HHHHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCC-ee
Q psy1917 52 LIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGN-DL 99 (212)
Q Consensus 52 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~-~~ 99 (212)
......-.||+|++++-.+..+.++.+. .|++|+|....+. ++
T Consensus 30 ~~~~R~I~HP~F~n~~~~qAe~~L~~~~-----~Ge~iIRPSSkG~dhL 73 (220)
T PF14633_consen 30 KFVKRVIKHPLFKNFNYKQAEEYLADQD-----VGEVIIRPSSKGPDHL 73 (220)
T ss_dssp ---HHHHCSTTEESS-HHHHHHHHCCS------TT-EEEEE-TTTTTEE
T ss_pred ccccccccCCCccCCCHHHHHHHHhcCC-----CCCEEEeeCCCCCCeE
Confidence 3445678899999999999999888764 6999999988874 44
No 57
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=50.80 E-value=75 Score=24.28 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=17.7
Q ss_pred eEEccCCCCCeeEEEecCEEEEEE
Q psy1917 88 YVITEGEAGNDLFVSAEGEFQVIK 111 (212)
Q Consensus 88 ~I~~~Gd~~~~~yiI~~G~v~v~~ 111 (212)
..++..+ .+.+|++++|.+.+..
T Consensus 41 ~d~H~~~-tdE~FyqleG~~~l~v 63 (159)
T TIGR03037 41 TDFHDDP-GEEFFYQLKGEMYLKV 63 (159)
T ss_pred cccccCC-CceEEEEEcceEEEEE
Confidence 4466644 7899999999999855
No 58
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=48.08 E-value=1.3e+02 Score=27.27 Aligned_cols=46 Identities=15% Similarity=0.241 Sum_probs=31.2
Q ss_pred ceEEEecCCCeEE-ccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 78 MHQAEYKADSYVI-TEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 78 ~~~~~~~~g~~I~-~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
+....+++|..+- +.-..+...++|++|++.+..++ ....|++||+
T Consensus 387 v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg-~~~~L~~GDS 433 (478)
T PRK15460 387 VKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDG-DIKLLGENES 433 (478)
T ss_pred EEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECC-EEEEecCCCE
Confidence 4566788887441 11223346778999999999876 4577788865
No 59
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=46.55 E-value=83 Score=24.77 Aligned_cols=46 Identities=9% Similarity=0.128 Sum_probs=31.2
Q ss_pred eEEEecCCCeE---------EccCCCCCeeEEEecCEEEEEECCE----EEEEeCCCCc
Q psy1917 79 HQAEYKADSYV---------ITEGEAGNDLFVSAEGEFQVIKDGK----ILAVMGPGKA 124 (212)
Q Consensus 79 ~~~~~~~g~~I---------~~~Gd~~~~~yiI~~G~v~v~~~~~----~~~~l~~g~~ 124 (212)
-...+++|.+. ++.......+|+|++|...+...+. ....+++|++
T Consensus 71 g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~ 129 (191)
T PRK04190 71 GTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTV 129 (191)
T ss_pred EEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCE
Confidence 45666777753 4444444589999999999887432 4677888864
No 60
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=46.04 E-value=72 Score=24.51 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=27.8
Q ss_pred EecCCCeEEc-cCCCCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 82 EYKADSYVIT-EGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 82 ~~~~g~~I~~-~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
.+.+|...-. --..+..+++|++|.+.+..++ ....+++||+
T Consensus 113 ~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~~~-~~~~l~~Gd~ 155 (185)
T PRK09943 113 TYQPGTTTGERIKHQGEEIGTVLEGEIVLTING-QDYHLVAGQS 155 (185)
T ss_pred EccCCCCcccccccCCcEEEEEEEeEEEEEECC-EEEEecCCCE
Confidence 4555553211 1123457999999999998876 5567888875
No 61
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=45.96 E-value=67 Score=26.46 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=32.1
Q ss_pred ceEEEecCCCeEEc-cCCCC-CeeEEEecCEEEEEECCEEEEEeCCCCcc
Q psy1917 78 MHQAEYKADSYVIT-EGEAG-NDLFVSAEGEFQVIKDGKILAVMGPGKAF 125 (212)
Q Consensus 78 ~~~~~~~~g~~I~~-~Gd~~-~~~yiI~~G~v~v~~~~~~~~~l~~g~~f 125 (212)
+....+++|.-.-. ....+ +.+.+|++|++.+..+++ ...|++|+++
T Consensus 60 ~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~g~-~~~L~~Gd~~ 108 (260)
T TIGR03214 60 QYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAEGE-THELREGGYA 108 (260)
T ss_pred EEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEECCE-EEEECCCCEE
Confidence 45667777653321 12333 679999999999998765 4588888854
No 62
>PLN02868 acyl-CoA thioesterase family protein
Probab=45.20 E-value=29 Score=30.56 Aligned_cols=32 Identities=13% Similarity=0.023 Sum_probs=26.3
Q ss_pred EEEEeCCCCcchhhhhhhCCCcceEEEEEeeeee
Q psy1917 115 ILAVMGPGKAFGELAILYNCTRTASIRGFLTVLH 148 (212)
Q Consensus 115 ~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~ 148 (212)
.+..+++|++||+. +.+.++.++++|.+++..
T Consensus 72 ~l~~l~~Gd~fG~~--l~~~~~~~~~~A~~d~~v 103 (413)
T PLN02868 72 PEFLLKRYDYFGYG--LSGSVHSADVVAVSELTC 103 (413)
T ss_pred EEEEeCCCCEeehh--hCCCCcccEEEECCCEEE
Confidence 35567999999985 688899999999888754
No 63
>PHA00672 hypothetical protein
Probab=43.83 E-value=58 Score=23.90 Aligned_cols=36 Identities=11% Similarity=0.024 Sum_probs=30.3
Q ss_pred ceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCE
Q psy1917 78 MHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGK 114 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~ 114 (212)
....++++|..+.-.=-.-+.+ +|.+|.+.|+.++.
T Consensus 49 ARei~IPkGt~LtG~~hkf~~~-ii~sG~itV~tdge 84 (152)
T PHA00672 49 ARTIRIPAGVALTGALIKVSTV-LIFSGHATVFIGGE 84 (152)
T ss_pred EEEEeccCceeeeeeeeEeeEE-EEecccEEEEeCCc
Confidence 3567889999998777777788 99999999999864
No 64
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=43.69 E-value=2e+02 Score=25.12 Aligned_cols=47 Identities=4% Similarity=-0.094 Sum_probs=33.2
Q ss_pred ceEEEecCCCeEEccC-CCCCeeEEEecCEEEEEEC----CEEEEEeCCCCc
Q psy1917 78 MHQAEYKADSYVITEG-EAGNDLFVSAEGEFQVIKD----GKILAVMGPGKA 124 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~G-d~~~~~yiI~~G~v~v~~~----~~~~~~l~~g~~ 124 (212)
+....+++|...-..= ...+.+|+|++|++++... +.....+++||+
T Consensus 247 ~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~ 298 (367)
T TIGR03404 247 AAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDV 298 (367)
T ss_pred EEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCE
Confidence 4667777887664433 3356899999999998862 235677888875
No 65
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=37.77 E-value=1e+02 Score=25.37 Aligned_cols=49 Identities=12% Similarity=0.010 Sum_probs=36.7
Q ss_pred HhhceEEEecCCCeEE-ccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 75 VESMHQAEYKADSYVI-TEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 75 ~~~~~~~~~~~g~~I~-~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
...+....+++|..+- ++-......++|++|+-.+..++ ....+++||+
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~g-~~~~V~~GD~ 227 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNLDN-NWVPVEAGDY 227 (260)
T ss_pred CcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEECC-EEEEecCCCE
Confidence 4567789999999993 44444567889999998876654 6777788864
No 66
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=35.55 E-value=66 Score=24.54 Aligned_cols=50 Identities=20% Similarity=0.161 Sum_probs=33.5
Q ss_pred eEEEecCCC--eEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhh
Q psy1917 79 HQAEYKADS--YVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELA 129 (212)
Q Consensus 79 ~~~~~~~g~--~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ 129 (212)
....+++|. ..++--...+.|++|++|+..+..++ ....|++||+.|-.|
T Consensus 45 n~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~-~e~~lrpGD~~gFpA 96 (161)
T COG3837 45 NLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDG-GETRLRPGDSAGFPA 96 (161)
T ss_pred ceEEeCCCCccccccccccCceEEEEEcCceEEEECC-eeEEecCCceeeccC
Confidence 344455543 33444455678999999998887655 567789998766543
No 67
>PF12852 Cupin_6: Cupin
Probab=34.06 E-value=83 Score=24.05 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=25.6
Q ss_pred cCCCCCeeEEEecCEEEEEECC-EEEEEeCCCCc
Q psy1917 92 EGEAGNDLFVSAEGEFQVIKDG-KILAVMGPGKA 124 (212)
Q Consensus 92 ~Gd~~~~~yiI~~G~v~v~~~~-~~~~~l~~g~~ 124 (212)
++.+.-.+|+|.+|.+.+..++ .....+.+||+
T Consensus 31 ~~~~~~~fh~V~~G~~~l~~~~~~~~~~L~~GDi 64 (186)
T PF12852_consen 31 PGSPGASFHVVLRGSCWLRVPGGGEPIRLEAGDI 64 (186)
T ss_pred cCCCceEEEEEECCeEEEEEcCCCCeEEecCCCE
Confidence 3333568999999999999766 56778888875
No 68
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=33.56 E-value=1.4e+02 Score=26.09 Aligned_cols=48 Identities=8% Similarity=0.077 Sum_probs=31.2
Q ss_pred ceEEEecCCCeEEccCCCCCeeEEEecCEEEEEEC---CEE-EEEeCCCCcc
Q psy1917 78 MHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKD---GKI-LAVMGPGKAF 125 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~---~~~-~~~l~~g~~f 125 (212)
+....+.+|...--.-.....+.++++|++.+... ++. ...|++||+|
T Consensus 69 ~~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~ 120 (367)
T TIGR03404 69 GVNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLW 120 (367)
T ss_pred ceEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEE
Confidence 44556777775533222345799999999998873 333 3468888854
No 69
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=33.13 E-value=1.2e+02 Score=24.14 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=26.3
Q ss_pred hceEEEecCCCeEEccCCCCCeeEEEecCEEE
Q psy1917 77 SMHQAEYKADSYVITEGEAGNDLFVSAEGEFQ 108 (212)
Q Consensus 77 ~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~ 108 (212)
.....++++|..+-.....+..+.+|++|.+.
T Consensus 128 ~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f~ 159 (215)
T TIGR02451 128 RVRLLYIEAGQSIPQHTHKGFELTLVLHGAFS 159 (215)
T ss_pred EEEEEEECCCCccCCCcCCCcEEEEEEEEEEE
Confidence 45688888999988888888888899999953
No 70
>PF13128 DUF3954: Protein of unknown function (DUF3954)
Probab=31.93 E-value=65 Score=19.56 Aligned_cols=34 Identities=24% Similarity=0.516 Sum_probs=23.5
Q ss_pred ceEEEEECCeEEEEeCCCCeeeHhhhhcCCCcee
Q psy1917 157 GEFQVIKDGKILAVMGPGKAFGELAILYNCTRTA 190 (212)
Q Consensus 157 g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~ 190 (212)
...|+++||+...+--|..-||+..+.+...-..
T Consensus 10 ngiYiV~~G~v~~i~pP~sGfGeq~~~w~~gKv~ 43 (50)
T PF13128_consen 10 NGIYIVKDGEVTFIEPPESGFGEQVIVWQNGKVI 43 (50)
T ss_pred CeEEEEECCeEEEcCCCCCCcceEEEEEECCEEE
Confidence 3456668888777767777799988877654433
No 71
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=31.59 E-value=1.3e+02 Score=24.83 Aligned_cols=49 Identities=20% Similarity=0.135 Sum_probs=32.2
Q ss_pred ceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEE-EeCCCCcch
Q psy1917 78 MHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILA-VMGPGKAFG 126 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~-~l~~g~~fG 126 (212)
+...+.++|+.+-..-+.-+...++++|.+.|..+++... ..+..++|.
T Consensus 29 ~~~l~L~~g~~~~~~~~~~E~~vv~l~G~~~v~~~g~~~~~l~~R~~vF~ 78 (261)
T PF04962_consen 29 FGVLRLEAGESLEFELERRELGVVNLGGKATVTVDGEEFYELGGRESVFD 78 (261)
T ss_dssp CCCEEEECCHCCCCCCCSEEEEEEEESSSEEEEETTEEEEEE-TTSSGGG
T ss_pred eEEEEecCCCEEeccCCCcEEEEEEeCCEEEEEeCCceEEEecccccccC
Confidence 3456777777776665555578888899999998874333 334445554
No 72
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=29.79 E-value=33 Score=26.95 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=25.9
Q ss_pred CCHHHHHHHHhhceEEE--ecCCCeEEccCCCCC
Q psy1917 66 LDTLQVKEMVESMHQAE--YKADSYVITEGEAGN 97 (212)
Q Consensus 66 l~~~~~~~l~~~~~~~~--~~~g~~I~~~Gd~~~ 97 (212)
.++....+..+...... +++|++|+++|+..+
T Consensus 174 ~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 174 ATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred HHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 46667777777887777 999999999999654
No 73
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=28.79 E-value=1.2e+02 Score=20.97 Aligned_cols=28 Identities=21% Similarity=0.205 Sum_probs=18.0
Q ss_pred CCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 96 GNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 96 ~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
.-.+.++.+|...+..++ ....+++|++
T Consensus 23 ~~~i~~v~~G~~~~~~~~-~~~~l~~g~~ 50 (136)
T PF02311_consen 23 FYEIIYVLSGEGTLHIDG-QEYPLKPGDL 50 (136)
T ss_dssp SEEEEEEEEE-EEEEETT-EEEEE-TT-E
T ss_pred CEEEEEEeCCEEEEEECC-EEEEEECCEE
Confidence 346889999999998766 3456666654
No 74
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=28.75 E-value=1.2e+02 Score=24.70 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=11.4
Q ss_pred eecceEEEEECCeEEEEeCCCCee
Q psy1917 154 SAEGEFQVIKDGKILAVMGPGKAF 177 (212)
Q Consensus 154 ~~~g~~~~~~~~~~~~~l~~G~~f 177 (212)
.-+|++.+..+|+ ...+++||++
T Consensus 181 VLEGe~~l~IdG~-t~~l~pGDvl 203 (233)
T PRK15457 181 VLEGELHVRHEGE-TMIAKAGDVM 203 (233)
T ss_pred EEEeEEEEEECCE-EEEeCCCcEE
Confidence 3456555544433 3345566543
No 75
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=26.99 E-value=1e+02 Score=23.32 Aligned_cols=13 Identities=15% Similarity=0.238 Sum_probs=5.8
Q ss_pred eEEEecCEEEEEE
Q psy1917 99 LFVSAEGEFQVIK 111 (212)
Q Consensus 99 ~yiI~~G~v~v~~ 111 (212)
+.+|++|.+.+..
T Consensus 98 i~~VlEG~L~i~~ 110 (152)
T PF06249_consen 98 IKYVLEGTLEISI 110 (152)
T ss_dssp EEEEEEEEEEEEE
T ss_pred EEEEEEeEEEEEE
Confidence 4444444444443
No 76
>cd06929 NR_LBD_F1 Ligand-binding domain of nuclear receptor family 1. Ligand-binding domain (LBD) of nuclear receptor (NR) family 1: This is one of the major subfamily of nuclear receptors, including thyroid receptor, retinoid acid receptor, ecdysone receptor, farnesoid X receptor, vitamin D receptor, and other related receptors. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD).
Probab=24.82 E-value=95 Score=23.27 Aligned_cols=31 Identities=3% Similarity=-0.075 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhcCccCCCCCHHHHHHHHhh
Q psy1917 47 FRSKQLIKAAIMDNDFLKNLDTLQVKEMVES 77 (212)
Q Consensus 47 ~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~ 77 (212)
......+.++.+++|.|..|+.++...|++.
T Consensus 12 ~~~l~~~v~~ak~ip~F~~L~~~Dq~~Llk~ 42 (174)
T cd06929 12 TVAIRRVVEFAKRIPGFRELSQEDQIALLKG 42 (174)
T ss_pred HHHHHHHHhhccCCcCcccCChhHHHHHHHh
Confidence 3556677889999999999999988887765
No 77
>KOG2378|consensus
Probab=24.78 E-value=37 Score=30.50 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.2
Q ss_pred CCCcchhhhhhhCCCcceEEEEEe
Q psy1917 121 PGKAFGELAILYNCTRTASIRGFL 144 (212)
Q Consensus 121 ~g~~fGe~~ll~~~~r~a~v~a~~ 144 (212)
.|+-||.+|+.+..||.|+++-..
T Consensus 1 eGddfgklalvnd~praativl~e 24 (573)
T KOG2378|consen 1 EGDDFGKLALVNDAPRAATIVLRE 24 (573)
T ss_pred CCcccchhccccccccccceeeec
Confidence 488999999999999999998643
No 78
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=24.71 E-value=3e+02 Score=23.71 Aligned_cols=33 Identities=18% Similarity=0.055 Sum_probs=23.3
Q ss_pred EEecCCCeEEccCCCCCeeEEEecCEEEEEECC
Q psy1917 81 AEYKADSYVITEGEAGNDLFVSAEGEFQVIKDG 113 (212)
Q Consensus 81 ~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~ 113 (212)
..+++|..--..-..+..+|.|.+|.=.+.+++
T Consensus 255 q~L~~G~~t~~~r~T~s~Vf~VieG~G~s~ig~ 287 (335)
T TIGR02272 255 QLLPKGFRTATYRSTDATVFCVVEGRGQVRIGD 287 (335)
T ss_pred hccCCCCCCCCccccccEEEEEEeCeEEEEECC
Confidence 455666665555566778999999988776654
No 79
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=23.16 E-value=1.7e+02 Score=23.74 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=25.4
Q ss_pred EccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 90 ITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 90 ~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
-..++....+.||++|++.+...+ ....|++|++
T Consensus 77 ~e~d~~ae~~lfVv~Ge~tv~~~G-~th~l~eggy 110 (264)
T COG3257 77 PEGDEGAETFLFVVSGEITVKAEG-KTHALREGGY 110 (264)
T ss_pred CCCCCcceEEEEEEeeeEEEEEcC-eEEEeccCCe
Confidence 344556678999999999998876 4566777764
No 80
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=20.82 E-value=33 Score=27.65 Aligned_cols=48 Identities=17% Similarity=0.224 Sum_probs=36.1
Q ss_pred ceeecccCCHHHHHHHHHHhhcC-ccCCCC-CHHHHHHHHhhceEEEecC
Q psy1917 38 IQIQRYDKDFRSKQLIKAAIMDN-DFLKNL-DTLQVKEMVESMHQAEYKA 85 (212)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~l~~~-~lf~~l-~~~~~~~l~~~~~~~~~~~ 85 (212)
..+|.-..++.++-+|+..||+| .|+.++ +++-..+++..|+..+-..
T Consensus 118 iDLPVDINDPYDlGLLLRhLRHHSNLLAnIgdP~VreqVLsAMqEeeeEE 167 (238)
T PF02084_consen 118 IDLPVDINDPYDLGLLLRHLRHHSNLLANIGDPEVREQVLSAMQEEEEEE 167 (238)
T ss_pred cccccccCChhhHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhhhHHHH
Confidence 34555566778888888888876 577777 7888889999998765543
No 81
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=20.36 E-value=1.8e+02 Score=19.00 Aligned_cols=28 Identities=7% Similarity=0.300 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHhhceEEEecCCCeEEccCCC
Q psy1917 63 LKNLDTLQVKEMVESMHQAEYKADSYVITEGEA 95 (212)
Q Consensus 63 f~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~ 95 (212)
+..++.++..+++.. -+.|++|+|.-+.
T Consensus 4 ~g~i~r~~Ae~~L~~-----~~~G~FLiR~s~~ 31 (94)
T cd00173 4 HGPISREEAEELLKK-----KPDGTFLVRDSES 31 (94)
T ss_pred ccCCCHHHHHHHHhc-----CCCceEEEEecCC
Confidence 445788888887766 6899999999874
No 82
>cd06930 NR_LBD_F2 Ligand-binding domain of nuclear receptor family 2. Ligand-binding domain (LBD) of nuclear receptor (NR) family 2: This is one of the major subfamily of nuclear receptors, including some well known nuclear receptors such as glucocorticoid receptor (GR), mineralocorticoid receptor (MR), estrogen receptor (ER), progesterone receptor (PR), and androgen receptor (AR), other related receptors. Nuclear receptors form a superfamily of ligand-activated transcription regulators, which regulate various physiological functions, from development, reproduction, to homeostasis and metabolism in animals (metazoans). The family contains not only receptors for known ligands but also orphan receptors for which ligands do not exist or have not been identified. NRs share a common structural organization with a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a non-conserved hinge and a C-terminal ligand binding domain (LBD).
Probab=20.27 E-value=1.6e+02 Score=21.62 Aligned_cols=30 Identities=10% Similarity=-0.046 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhcCccCCCCCHHHHHHHHhh
Q psy1917 48 RSKQLIKAAIMDNDFLKNLDTLQVKEMVES 77 (212)
Q Consensus 48 ~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~ 77 (212)
.....+.++.+..|.|..|+.++...+++.
T Consensus 10 ~~l~~~ie~ak~~p~F~~L~~~Dq~~Llk~ 39 (165)
T cd06930 10 RVLFKTVDWAKNLPAFRNLPLDDQLTLLQN 39 (165)
T ss_pred HHHHHHHHHHHcCCccccCChHHHHHHHHH
Confidence 445567789999999999999988887775
Done!