Query psy1917
Match_columns 212
No_of_seqs 156 out of 1589
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 19:35:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1917.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1917hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4din_B CAMP-dependent protein 100.0 3.3E-32 1.1E-36 234.5 17.6 195 17-212 93-359 (381)
2 3tnp_B CAMP-dependent protein 100.0 1.5E-31 5.2E-36 232.9 20.8 201 12-212 101-383 (416)
3 2qcs_B CAMP-dependent protein 100.0 7.1E-31 2.4E-35 217.0 19.6 194 18-212 3-268 (291)
4 3shr_A CGMP-dependent protein 100.0 1.9E-29 6.4E-34 209.6 20.7 176 37-212 21-268 (299)
5 3of1_A CAMP-dependent protein 100.0 7.3E-29 2.5E-33 199.6 17.5 162 51-212 3-231 (246)
6 4f7z_A RAP guanine nucleotide 99.9 1.3E-25 4.4E-30 213.9 21.0 104 39-143 26-136 (999)
7 3pna_A CAMP-dependent protein 99.9 9.8E-25 3.4E-29 164.4 15.7 142 18-212 2-143 (154)
8 3idb_B CAMP-dependent protein 99.9 1.3E-24 4.4E-29 164.8 16.3 146 19-212 1-147 (161)
9 1o7f_A CAMP-dependent RAP1 gua 99.9 7.4E-24 2.5E-28 186.1 19.8 122 15-143 8-136 (469)
10 3ocp_A PRKG1 protein; serine/t 99.9 2.3E-22 7.8E-27 148.6 14.9 123 38-212 6-128 (139)
11 3gyd_A CNMP-BD protein, cyclic 99.9 1.2E-20 4.1E-25 146.8 14.4 127 38-211 22-148 (187)
12 2d93_A RAP guanine nucleotide 99.8 6E-21 2E-25 140.2 9.0 119 42-212 3-123 (134)
13 2ptm_A Hyperpolarization-activ 99.8 2.2E-20 7.4E-25 146.2 10.9 118 44-212 60-177 (198)
14 3mdp_A Cyclic nucleotide-bindi 99.8 3.5E-20 1.2E-24 136.6 10.1 113 55-211 6-118 (142)
15 4f8a_A Potassium voltage-gated 99.8 1.2E-19 4.1E-24 136.5 12.5 120 41-212 13-134 (160)
16 2z69_A DNR protein; beta barre 99.8 1.1E-19 3.7E-24 135.8 12.1 115 50-211 7-122 (154)
17 1vp6_A CNBD, cyclic-nucleotide 99.8 1.1E-19 3.7E-24 133.6 11.7 110 48-211 4-113 (138)
18 2pqq_A Putative transcriptiona 99.8 8.1E-20 2.8E-24 135.5 11.2 111 54-211 4-114 (149)
19 3of1_A CAMP-dependent protein 99.8 4.6E-20 1.6E-24 147.9 9.3 145 5-149 72-220 (246)
20 3bpz_A Potassium/sodium hyperp 99.8 1.4E-19 4.9E-24 142.0 9.0 111 50-212 67-177 (202)
21 4ev0_A Transcription regulator 99.8 9.1E-19 3.1E-23 138.0 13.4 108 57-211 1-108 (216)
22 3d0s_A Transcriptional regulat 99.8 5.2E-19 1.8E-23 140.7 11.6 113 53-212 4-116 (227)
23 3dn7_A Cyclic nucleotide bindi 99.8 1E-18 3.5E-23 135.8 12.4 111 54-211 6-117 (194)
24 3e97_A Transcriptional regulat 99.8 6.3E-19 2.2E-23 140.5 11.2 111 54-211 5-115 (231)
25 3fx3_A Cyclic nucleotide-bindi 99.8 1.2E-18 4E-23 139.5 12.6 113 52-211 8-120 (237)
26 4ava_A Lysine acetyltransferas 99.8 1.7E-18 5.9E-23 145.5 13.6 110 55-212 13-122 (333)
27 3ukn_A Novel protein similar t 99.8 8.9E-19 3E-23 138.4 11.1 105 56-212 76-182 (212)
28 1zyb_A Transcription regulator 99.8 2.1E-18 7.3E-23 138.0 13.4 115 51-212 14-131 (232)
29 3shr_A CGMP-dependent protein 99.8 2.8E-19 9.6E-24 148.1 7.1 145 5-149 104-257 (299)
30 3dv8_A Transcriptional regulat 99.8 3.1E-18 1.1E-22 135.2 12.1 110 55-211 3-114 (220)
31 3iwz_A CAP-like, catabolite ac 99.8 3.6E-18 1.2E-22 135.8 12.5 112 53-211 9-121 (230)
32 1wgp_A Probable cyclic nucleot 99.8 4.9E-19 1.7E-23 130.0 6.1 108 55-212 6-126 (137)
33 2qcs_B CAMP-dependent protein 99.8 3.2E-18 1.1E-22 140.9 11.7 145 5-149 104-257 (291)
34 3tnp_B CAMP-dependent protein 99.8 9.2E-19 3.1E-23 152.3 8.3 145 5-149 214-372 (416)
35 4din_B CAMP-dependent protein 99.8 6.5E-19 2.2E-23 151.5 7.3 145 5-149 195-348 (381)
36 3dkw_A DNR protein; CRP-FNR, H 99.7 9.1E-19 3.1E-23 139.0 5.7 112 53-211 7-119 (227)
37 4f7z_A RAP guanine nucleotide 99.7 5.4E-18 1.8E-22 161.5 12.0 105 44-148 326-433 (999)
38 2gau_A Transcriptional regulat 99.7 8.8E-18 3E-22 134.0 9.9 107 58-211 13-119 (232)
39 3ryp_A Catabolite gene activat 99.7 7.3E-17 2.5E-21 126.5 11.0 104 61-211 2-106 (210)
40 3cf6_E RAP guanine nucleotide 99.7 2.4E-16 8E-21 144.9 15.9 124 38-212 15-140 (694)
41 2oz6_A Virulence factor regula 99.7 1.8E-16 6.2E-21 123.9 11.4 99 66-211 1-103 (207)
42 3kcc_A Catabolite gene activat 99.7 2.5E-16 8.6E-21 128.2 10.7 108 57-211 48-156 (260)
43 1o5l_A Transcriptional regulat 99.7 2.3E-16 7.8E-21 124.5 8.7 106 59-211 3-109 (213)
44 2fmy_A COOA, carbon monoxide o 99.6 1.7E-16 5.8E-21 125.6 7.0 102 55-211 4-105 (220)
45 1ft9_A Carbon monoxide oxidati 99.6 3E-16 1E-20 124.4 6.9 101 56-211 1-101 (222)
46 1o7f_A CAMP-dependent RAP1 gua 99.6 4E-15 1.4E-19 130.4 13.4 108 41-148 323-433 (469)
47 3e6c_C CPRK, cyclic nucleotide 99.6 1.5E-15 5.3E-20 122.5 9.2 105 57-211 11-115 (250)
48 3la7_A Global nitrogen regulat 99.6 2.9E-14 9.8E-19 114.7 11.6 97 68-211 30-131 (243)
49 3beh_A MLL3241 protein; transm 99.5 5.1E-16 1.7E-20 132.1 0.6 105 54-212 227-331 (355)
50 2bgc_A PRFA; bacterial infecti 99.5 2.6E-14 9E-19 114.5 10.0 100 64-211 2-106 (238)
51 3b02_A Transcriptional regulat 99.5 5.5E-14 1.9E-18 109.2 10.8 81 81-209 2-82 (195)
52 2zcw_A TTHA1359, transcription 99.4 3E-13 1E-17 105.5 9.0 87 74-209 1-89 (202)
53 3ocp_A PRKG1 protein; serine/t 95.4 0.015 5.3E-07 41.2 4.1 32 118-149 86-117 (139)
54 2ptm_A Hyperpolarization-activ 95.1 0.017 5.7E-07 43.9 3.7 34 116-149 133-166 (198)
55 3idb_B CAMP-dependent protein 95.0 0.02 6.8E-07 41.8 3.7 35 115-149 102-136 (161)
56 3pna_A CAMP-dependent protein 95.0 0.023 7.9E-07 41.2 4.1 32 118-149 101-132 (154)
57 3mdp_A Cyclic nucleotide-bindi 94.9 0.026 8.8E-07 39.9 4.0 34 116-149 75-108 (142)
58 3gyd_A CNMP-BD protein, cyclic 94.5 0.046 1.6E-06 41.1 4.7 35 115-149 104-138 (187)
59 3ukn_A Novel protein similar t 94.3 0.023 7.9E-07 43.5 2.7 33 117-149 137-171 (212)
60 4ava_A Lysine acetyltransferas 94.0 0.043 1.5E-06 45.0 3.9 34 115-148 77-110 (333)
61 3bpz_A Potassium/sodium hyperp 93.9 0.029 9.8E-07 42.7 2.6 31 119-149 136-166 (202)
62 2pqq_A Putative transcriptiona 93.4 0.065 2.2E-06 38.0 3.6 35 115-149 70-104 (149)
63 3b02_A Transcriptional regulat 92.9 0.1 3.5E-06 39.2 4.2 34 115-149 41-74 (195)
64 1vp6_A CNBD, cyclic-nucleotide 92.7 0.082 2.8E-06 37.1 3.2 30 120-149 74-103 (138)
65 4f8a_A Potassium voltage-gated 92.6 0.062 2.1E-06 38.7 2.6 32 118-149 90-123 (160)
66 2z69_A DNR protein; beta barre 92.5 0.092 3.1E-06 37.4 3.3 35 115-149 77-112 (154)
67 3d0s_A Transcriptional regulat 92.3 0.12 4.2E-06 39.6 4.0 35 115-149 71-105 (227)
68 4ev0_A Transcription regulator 92.3 0.14 4.6E-06 38.9 4.2 35 115-149 64-98 (216)
69 1wgp_A Probable cyclic nucleot 91.9 0.15 5E-06 35.7 3.8 33 117-149 74-115 (137)
70 2gau_A Transcriptional regulat 91.3 0.2 6.8E-06 38.5 4.3 35 115-149 75-109 (232)
71 3fjs_A Uncharacterized protein 91.3 2.4 8.3E-05 28.9 10.2 44 78-122 38-81 (114)
72 3rns_A Cupin 2 conserved barre 90.7 2.2 7.6E-05 33.0 9.8 46 77-123 38-83 (227)
73 3e97_A Transcriptional regulat 90.6 0.16 5.3E-06 39.1 2.9 35 115-149 71-105 (231)
74 3fx3_A Cyclic nucleotide-bindi 90.2 0.19 6.5E-06 38.8 3.2 35 115-149 76-110 (237)
75 1zyb_A Transcription regulator 89.7 0.22 7.5E-06 38.5 3.2 35 115-149 85-120 (232)
76 2ozj_A Cupin 2, conserved barr 89.4 3.5 0.00012 27.7 9.4 45 78-123 40-84 (114)
77 2d93_A RAP guanine nucleotide 89.4 0.11 3.8E-06 36.4 1.1 31 119-149 81-112 (134)
78 2oz6_A Virulence factor regula 89.3 0.21 7.3E-06 37.5 2.8 35 115-149 55-93 (207)
79 3ryp_A Catabolite gene activat 89.2 0.26 8.8E-06 37.1 3.2 35 115-149 61-96 (210)
80 3kcc_A Catabolite gene activat 88.7 0.28 9.6E-06 38.7 3.2 35 115-149 111-146 (260)
81 3iwz_A CAP-like, catabolite ac 88.5 0.43 1.5E-05 36.4 4.1 35 115-149 76-111 (230)
82 3dn7_A Cyclic nucleotide bindi 88.3 0.38 1.3E-05 35.8 3.5 34 116-149 73-107 (194)
83 1o5l_A Transcriptional regulat 87.8 0.42 1.4E-05 36.3 3.6 34 115-148 64-98 (213)
84 2zcw_A TTHA1359, transcription 87.2 0.53 1.8E-05 35.3 3.8 34 115-149 49-82 (202)
85 3dkw_A DNR protein; CRP-FNR, H 86.7 0.24 8.2E-06 37.8 1.6 35 115-149 74-109 (227)
86 3dv8_A Transcriptional regulat 86.3 0.86 3E-05 34.4 4.6 35 115-149 68-104 (220)
87 2fqp_A Hypothetical protein BP 85.9 1.5 5.3E-05 28.8 5.2 48 78-125 20-69 (97)
88 2pfw_A Cupin 2, conserved barr 84.0 7.4 0.00025 26.0 9.8 44 78-122 36-79 (116)
89 3la7_A Global nitrogen regulat 83.3 1.2 4E-05 34.5 4.2 35 115-149 85-121 (243)
90 3lwc_A Uncharacterized protein 82.6 3.4 0.00012 28.6 6.0 44 79-124 43-86 (119)
91 1yhf_A Hypothetical protein SP 82.4 8.7 0.0003 25.5 9.9 45 78-123 42-86 (115)
92 2gu9_A Tetracenomycin polyketi 80.2 6.9 0.00024 25.8 6.8 46 78-124 23-71 (113)
93 3cf6_E RAP guanine nucleotide 80.1 1.2 3.9E-05 40.9 3.4 32 118-149 97-129 (694)
94 1o5u_A Novel thermotoga mariti 80.1 3.2 0.00011 27.9 5.0 45 78-124 33-77 (101)
95 3beh_A MLL3241 protein; transm 79.8 0.36 1.2E-05 40.1 0.0 31 119-149 290-320 (355)
96 4e2g_A Cupin 2 conserved barre 79.7 4.4 0.00015 27.7 5.8 47 77-124 42-88 (126)
97 3rns_A Cupin 2 conserved barre 79.4 11 0.00039 28.9 8.7 36 78-113 155-190 (227)
98 1v70_A Probable antibiotics sy 79.1 8.7 0.0003 24.7 6.9 45 78-123 30-75 (105)
99 2i45_A Hypothetical protein; n 77.0 9.9 0.00034 25.1 6.8 31 83-113 35-65 (107)
100 1sfn_A Conserved hypothetical 76.8 10 0.00035 29.6 7.7 47 76-123 165-212 (246)
101 3h8u_A Uncharacterized conserv 76.5 2.8 9.7E-05 28.7 3.9 48 77-124 40-88 (125)
102 3ibm_A Cupin 2, conserved barr 76.4 7.6 0.00026 28.4 6.5 46 78-124 58-103 (167)
103 3bcw_A Uncharacterized protein 76.2 1.4 4.6E-05 31.0 2.2 45 80-125 53-97 (123)
104 2b8m_A Hypothetical protein MJ 75.4 3.5 0.00012 27.9 4.1 46 79-124 30-75 (117)
105 2pyt_A Ethanolamine utilizatio 75.3 3.8 0.00013 29.0 4.4 44 79-125 60-103 (133)
106 3es1_A Cupin 2, conserved barr 73.6 2.5 8.7E-05 31.6 3.2 49 77-125 80-128 (172)
107 3l2h_A Putative sugar phosphat 73.6 6.2 0.00021 28.4 5.4 47 78-125 48-96 (162)
108 2bnm_A Epoxidase; oxidoreducta 73.3 5.4 0.00018 29.7 5.1 46 79-124 120-171 (198)
109 4b29_A Dimethylsulfoniopropion 73.0 4.7 0.00016 31.3 4.7 45 80-124 136-180 (217)
110 1y9q_A Transcriptional regulat 72.6 13 0.00046 27.4 7.2 43 80-123 108-152 (192)
111 3i7d_A Sugar phosphate isomera 71.9 7.5 0.00026 28.3 5.5 46 78-124 45-92 (163)
112 2qnk_A 3-hydroxyanthranilate 3 70.8 18 0.00061 29.2 7.7 35 78-113 209-243 (286)
113 3e6c_C CPRK, cyclic nucleotide 70.7 3.2 0.00011 32.0 3.4 32 115-149 74-105 (250)
114 2f4p_A Hypothetical protein TM 70.3 6.3 0.00021 28.1 4.6 47 78-124 50-96 (147)
115 2xp1_A SPT6; transcription, IW 68.3 7.4 0.00025 29.2 4.7 40 57-102 11-50 (178)
116 3es4_A Uncharacterized protein 67.3 4.6 0.00016 28.1 3.2 45 80-125 46-90 (116)
117 4i4a_A Similar to unknown prot 67.3 14 0.00047 25.1 5.8 45 78-123 36-80 (128)
118 3d82_A Cupin 2, conserved barr 67.1 22 0.00074 22.7 6.8 23 91-113 45-67 (102)
119 3jzv_A Uncharacterized protein 66.9 8.2 0.00028 28.4 4.7 46 78-124 55-100 (166)
120 1o4t_A Putative oxalate decarb 66.4 16 0.00053 25.4 6.0 45 78-123 59-104 (133)
121 1sfn_A Conserved hypothetical 66.0 36 0.0012 26.3 8.7 44 78-124 52-95 (246)
122 3kgz_A Cupin 2 conserved barre 65.7 8.4 0.00029 27.9 4.6 45 79-124 47-91 (156)
123 3h7j_A Bacilysin biosynthesis 65.2 14 0.00048 28.6 6.1 45 79-124 148-193 (243)
124 1dgw_A Canavalin; duplicated s 64.9 7.2 0.00025 28.9 4.1 47 78-124 43-92 (178)
125 3cew_A Uncharacterized cupin p 64.7 10 0.00035 25.8 4.7 45 78-123 28-74 (125)
126 3h7j_A Bacilysin biosynthesis 64.2 16 0.00056 28.3 6.3 47 77-124 35-81 (243)
127 2vpv_A Protein MIF2, MIF2P; nu 64.0 6.4 0.00022 29.2 3.6 44 80-124 92-137 (166)
128 3bu7_A Gentisate 1,2-dioxygena 63.8 12 0.00041 31.7 5.7 45 78-123 296-340 (394)
129 2opk_A Hypothetical protein; p 62.7 6.6 0.00023 26.6 3.3 31 94-124 51-82 (112)
130 1lr5_A Auxin binding protein 1 61.0 12 0.00039 27.0 4.6 47 78-124 43-97 (163)
131 4axo_A EUTQ, ethanolamine util 60.7 10 0.00034 27.6 4.1 29 95-124 83-111 (151)
132 2q30_A Uncharacterized protein 60.3 13 0.00046 24.2 4.5 47 78-124 35-83 (110)
133 2vqa_A SLL1358 protein, MNCA; 59.9 22 0.00075 29.1 6.6 48 78-125 236-288 (361)
134 1sef_A Conserved hypothetical 59.6 22 0.00074 28.1 6.3 46 78-124 184-230 (274)
135 1vj2_A Novel manganese-contain 59.3 11 0.00039 25.7 4.1 45 79-124 51-95 (126)
136 3nw4_A Gentisate 1,2-dioxygena 59.3 58 0.002 27.2 9.1 35 79-113 282-316 (368)
137 1juh_A Quercetin 2,3-dioxygena 56.6 9.4 0.00032 31.6 3.8 40 86-125 262-301 (350)
138 1y3t_A Hypothetical protein YX 55.4 31 0.0011 27.7 6.8 44 79-123 49-93 (337)
139 1sq4_A GLXB, glyoxylate-induce 54.7 21 0.00072 28.4 5.5 48 76-124 191-239 (278)
140 2fmy_A COOA, carbon monoxide o 54.2 8.2 0.00028 28.9 2.8 47 88-149 49-95 (220)
141 4e2q_A Ureidoglycine aminohydr 53.6 6.9 0.00024 31.3 2.4 48 78-125 72-119 (266)
142 3d0j_A Uncharacterized protein 53.3 16 0.00056 26.2 4.0 35 90-124 44-85 (140)
143 2bgc_A PRFA; bacterial infecti 53.2 8.8 0.0003 29.2 2.9 31 116-147 61-94 (238)
144 3bu7_A Gentisate 1,2-dioxygena 52.4 12 0.00041 31.7 3.7 45 79-124 126-171 (394)
145 1rc6_A Hypothetical protein YL 52.2 51 0.0018 25.6 7.4 45 79-124 62-108 (261)
146 2d40_A Z3393, putative gentisa 51.8 80 0.0027 26.0 8.8 35 79-113 271-305 (354)
147 1sq4_A GLXB, glyoxylate-induce 50.2 16 0.00056 29.1 4.1 46 78-124 70-117 (278)
148 2vqa_A SLL1358 protein, MNCA; 48.8 33 0.0011 28.0 5.9 46 78-123 54-104 (361)
149 2o8q_A Hypothetical protein; c 48.8 20 0.00067 24.6 3.9 28 97-124 65-92 (134)
150 1uij_A Beta subunit of beta co 47.1 23 0.00077 30.2 4.7 49 77-125 50-101 (416)
151 2oa2_A BH2720 protein; 1017534 47.0 28 0.00095 24.5 4.6 47 78-124 45-97 (148)
152 2q1z_B Anti-sigma factor CHRR, 46.8 40 0.0014 25.3 5.6 32 77-108 126-157 (195)
153 1yfu_A 3-hydroxyanthranilate-3 45.3 36 0.0012 25.3 5.0 37 88-125 48-87 (174)
154 2qjv_A Uncharacterized IOLB-li 45.2 71 0.0024 25.5 7.0 71 76-146 29-103 (270)
155 3or8_A Transcription elongatio 45.0 27 0.00092 26.6 4.3 36 57-97 5-40 (197)
156 1j58_A YVRK protein; cupin, de 44.1 40 0.0014 27.8 5.8 47 78-124 259-310 (385)
157 2d40_A Z3393, putative gentisa 43.4 20 0.00068 29.7 3.7 46 78-124 102-148 (354)
158 1rc6_A Hypothetical protein YL 43.4 31 0.001 26.9 4.7 45 78-123 181-226 (261)
159 3ht1_A REMF protein; cupin fol 42.8 19 0.00064 24.9 3.1 44 80-124 43-88 (145)
160 1fi2_A Oxalate oxidase, germin 42.7 57 0.0019 24.3 6.0 48 77-124 73-128 (201)
161 2cav_A Protein (canavalin); vi 42.6 27 0.00092 30.0 4.5 50 76-125 86-138 (445)
162 1j58_A YVRK protein; cupin, de 42.3 36 0.0012 28.1 5.2 47 78-124 81-131 (385)
163 3myx_A Uncharacterized protein 41.3 26 0.0009 27.4 3.9 29 97-125 187-215 (238)
164 4e2q_A Ureidoglycine aminohydr 41.2 55 0.0019 26.0 5.9 49 75-124 185-234 (266)
165 1ft9_A Carbon monoxide oxidati 41.1 20 0.00067 26.8 3.1 47 88-149 45-91 (222)
166 1sef_A Conserved hypothetical 40.2 69 0.0024 25.1 6.4 45 79-124 65-111 (274)
167 3lag_A Uncharacterized protein 39.3 10 0.00035 25.0 1.1 47 78-124 19-68 (98)
168 3nw4_A Gentisate 1,2-dioxygena 39.1 35 0.0012 28.5 4.6 37 78-114 105-142 (368)
169 1x82_A Glucose-6-phosphate iso 39.0 39 0.0013 25.1 4.5 47 78-124 69-128 (190)
170 1zvf_A 3-hydroxyanthranilate 3 38.5 16 0.00056 27.2 2.2 37 88-125 47-90 (176)
171 3c3v_A Arachin ARAH3 isoform; 37.4 95 0.0033 27.1 7.2 53 73-125 369-427 (510)
172 1fxz_A Glycinin G1; proglycini 37.2 89 0.0031 27.0 7.0 48 77-124 339-392 (476)
173 3fz3_A Prunin; TREE NUT allerg 34.6 1.3E+02 0.0043 26.6 7.5 55 71-125 389-449 (531)
174 2ea7_A 7S globulin-1; beta bar 33.1 48 0.0016 28.3 4.5 49 76-124 61-112 (434)
175 2d5f_A Glycinin A3B4 subunit; 33.0 1.2E+02 0.004 26.4 7.1 53 72-124 363-421 (493)
176 3myx_A Uncharacterized protein 31.1 42 0.0014 26.3 3.5 37 85-123 55-91 (238)
177 4h7l_A Uncharacterized protein 28.5 50 0.0017 24.1 3.3 33 91-124 61-95 (157)
178 2qnk_A 3-hydroxyanthranilate 3 28.2 2.3E+02 0.0079 22.7 7.9 30 81-111 34-66 (286)
179 1y3t_A Hypothetical protein YX 27.5 91 0.0031 24.8 5.2 28 96-124 239-266 (337)
180 2e9q_A 11S globulin subunit be 27.2 1.7E+02 0.0059 25.1 7.1 55 71-125 317-377 (459)
181 2phl_A Phaseolin; plant SEED s 26.4 76 0.0026 26.8 4.6 48 77-124 53-103 (397)
182 2xlg_A SLL1785 protein, CUCA; 25.9 28 0.00097 27.1 1.7 46 79-124 46-111 (239)
183 3ksc_A LEGA class, prolegumin; 24.4 2.5E+02 0.0086 24.4 7.6 50 76-125 358-413 (496)
184 3s7i_A Allergen ARA H 1, clone 24.1 86 0.003 26.6 4.5 48 78-125 46-96 (418)
185 2o1q_A Putative acetyl/propion 23.7 68 0.0023 22.5 3.3 33 77-109 45-77 (145)
186 3kgl_A Cruciferin; 11S SEED gl 22.8 2.6E+02 0.0088 24.1 7.3 54 72-125 319-378 (466)
187 2arc_A ARAC, arabinose operon 22.1 1.1E+02 0.0038 21.0 4.3 27 97-124 39-65 (164)
188 3hqx_A UPF0345 protein aciad03 21.3 1.3E+02 0.0044 20.6 4.1 31 95-125 56-87 (111)
189 1juh_A Quercetin 2,3-dioxygena 21.2 81 0.0028 25.8 3.7 44 81-124 53-103 (350)
No 1
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=100.00 E-value=3.3e-32 Score=234.52 Aligned_cols=195 Identities=27% Similarity=0.471 Sum_probs=176.1
Q ss_pred cCCCCCcEEeeccCCCCCCCcceeecccCCHHHHHHHHHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCC
Q psy1917 17 LNSKKQGVSGESSTNGQTANDIQIQRYDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAG 96 (212)
Q Consensus 17 ~~~~r~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~ 96 (212)
.+.||++||||+..+... ..+..+.++|+.++.+.+.++|+++++|..|+++++..++..+..+.|++|++|+++||.+
T Consensus 93 ~~~~r~~vsae~~~~~~~-~~~~~~~~~ks~~~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~ 171 (381)
T 4din_B 93 ARRRRGGVSAEVYTEEDA-VSYVRKVIPKDYKTMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEG 171 (381)
T ss_dssp SSCCCCCCBCCCCCHHHH-HTCCCCCCCCCHHHHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBC
T ss_pred cCCCCCeEecccCCcccc-ccccCCCCCCCHHHHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCC
Confidence 357888999999875433 3556778999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee---------------------------
Q psy1917 97 NDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF--------------------------- 149 (212)
Q Consensus 97 ~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~--------------------------- 149 (212)
+++|+|++|.|+++++++.+..+++|++|||++++++.||.+|++|.+++..+
T Consensus 172 ~~~yiI~~G~v~v~~~~~~v~~l~~G~~fGe~all~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~ 251 (381)
T 4din_B 172 DNFYVVDQGEVDVYVNGEWVTNISEGGSFGELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLS 251 (381)
T ss_dssp CEEEECSSSEEEEEETTEEEEEEESSCCBCGGGGTSCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeeEEEEEECCeEeeeCCCCCEEEchHHhcCCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999997766532
Q ss_pred ---------------------------------------eeEEeecceEEEEEC---C---eEEEEeCCCCeeeHhhhhc
Q psy1917 150 ---------------------------------------NFSVSAEGEFQVIKD---G---KILAVMGPGKAFGELAILY 184 (212)
Q Consensus 150 ---------------------------------------~~~i~~~g~~~~~~~---~---~~~~~l~~G~~fGe~~ll~ 184 (212)
.+|++.+|...++.. + ..+..+++|++|||.+++.
T Consensus 252 ~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~fGe~all~ 331 (381)
T 4din_B 252 KVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIALLL 331 (381)
T ss_dssp HCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCEECTTGGGS
T ss_pred hhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCEechHHHhC
Confidence 568888998877653 2 2689999999999999999
Q ss_pred CCCceeEEEEeccEEEEEEchhhhhccC
Q psy1917 185 NCTRTASIRALTPCKVWMLDRRVFQKSA 212 (212)
Q Consensus 185 ~~~r~~sv~a~~~~~~~~l~~~~f~~i~ 212 (212)
+.+|.++|+|.++|.++.|++++|.+++
T Consensus 332 ~~~r~~tv~A~~~~~ll~i~~~~f~~ll 359 (381)
T 4din_B 332 NRPRAATVVARGPLKCVKLDRPRFERVL 359 (381)
T ss_dssp CCBCSSEEEESSCBEEEEEEHHHHHHHH
T ss_pred CCCceeEEEEcCCEEEEEEeHHHHHHHH
Confidence 9999999999999999999999998764
No 2
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=100.00 E-value=1.5e-31 Score=232.91 Aligned_cols=201 Identities=23% Similarity=0.344 Sum_probs=170.9
Q ss_pred ccccccCCCCCcEEeeccCCCCC-CCcceeecccCCHHHHHHHHHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEE
Q psy1917 12 KVGQLLNSKKQGVSGESSTNGQT-ANDIQIQRYDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVI 90 (212)
Q Consensus 12 e~~l~~~~~r~~v~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~ 90 (212)
++......||++||||+..+... ...+..+.++|+.++.+.+.++|+++++|..|+++++..|+..+..+.|++|++|+
T Consensus 101 ~~~~~~~~rr~~v~ae~~~~~~~~~~~~~~~~~~ks~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~ 180 (416)
T 3tnp_B 101 APVINRFTRRASVCAEAYNPDEEEDDAESRIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVI 180 (416)
T ss_dssp ----CTTSCCCCEECCCCCCC--------CCCCCCCHHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEE
T ss_pred CCCcccCCCccEEeccccCCcccccccccccCCCCCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEE
Confidence 34445568999999999886554 34556778899999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCeeEEEecCEEEEEEC----CEEEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee-----------------
Q psy1917 91 TEGEAGNDLFVSAEGEFQVIKD----GKILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF----------------- 149 (212)
Q Consensus 91 ~~Gd~~~~~yiI~~G~v~v~~~----~~~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~----------------- 149 (212)
++||.++.+|+|++|.|+++.+ ...+..+.+|++|||++++++.||++|++|.+++..+
T Consensus 181 ~qGd~~d~~YiI~sG~v~v~~~~~G~~~~v~~l~~G~~fGe~all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~ 260 (416)
T 3tnp_B 181 DQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAK 260 (416)
T ss_dssp CTTSCCCEEEEEEECEEEEEEECSSCEEEEEEEESCCEECGGGGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHH
T ss_pred eCCCCCceEEEEEeeEEEEEEecCCCEEEEEEecCCCEEeeHHHhcCCCcccEEEEccCeEEEEEeehhhhhhhhcchhH
Confidence 9999999999999999999873 2368899999999999999999999999997776532
Q ss_pred -------------------------------------------------eeEEeecceEEEEEC---------Ce--EEE
Q psy1917 150 -------------------------------------------------NFSVSAEGEFQVIKD---------GK--ILA 169 (212)
Q Consensus 150 -------------------------------------------------~~~i~~~g~~~~~~~---------~~--~~~ 169 (212)
.+|++.+|...++.. |+ .+.
T Consensus 261 ~~~~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~ 340 (416)
T 3tnp_B 261 KRKMYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIA 340 (416)
T ss_dssp HSSSSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEE
T ss_pred HHHHHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEE
Confidence 468888888776643 22 689
Q ss_pred EeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhhhhccC
Q psy1917 170 VMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQKSA 212 (212)
Q Consensus 170 ~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~~i~ 212 (212)
.+++|++|||.+++.+.+|.++|+|.++|.++.|++++|.+++
T Consensus 341 ~l~~G~~fGE~all~~~~r~~tv~A~~~~~ll~I~~~~f~~ll 383 (416)
T 3tnp_B 341 RCFRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLL 383 (416)
T ss_dssp EECTTCEESGGGGTCCSCCSSEEEEEEEEEEEEEEHHHHHHHH
T ss_pred EeCCCCEecHHHHhCCCCceeEEEEcCCeEEEEEEHHHHHHHh
Confidence 9999999999999999999999999999999999999998764
No 3
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.97 E-value=7.1e-31 Score=217.05 Aligned_cols=194 Identities=26% Similarity=0.478 Sum_probs=174.0
Q ss_pred CCCCCcEEeeccCCCCCCCcceeecccCCHHHHHHHHHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCC
Q psy1917 18 NSKKQGVSGESSTNGQTANDIQIQRYDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGN 97 (212)
Q Consensus 18 ~~~r~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~ 97 (212)
.++|.+||||...+... ..+..+..+|+.++.+.+.++|+++++|..|+++++..++..+..+.|++|++|+++||.++
T Consensus 3 ~~~~~~~~~e~~~~~~~-~~~~~~~~~ks~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~ 81 (291)
T 2qcs_B 3 RRRRGAISAEVYTEEDA-ASYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGD 81 (291)
T ss_dssp SCCCCCEECCCCCHHHH-HTCCCCCCCCCHHHHHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCC
T ss_pred CcCCceeeeeccCCccc-cccCCCCCCCCHHHHHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCc
Confidence 46788999999865432 34667889999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee----------------------------
Q psy1917 98 DLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF---------------------------- 149 (212)
Q Consensus 98 ~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~---------------------------- 149 (212)
.+|+|++|.|+++.+++.+..+.+|++|||.+++++.++.++++|.+++..+
T Consensus 82 ~~y~i~~G~v~~~~~g~~~~~l~~G~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (291)
T 2qcs_B 82 NFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSK 161 (291)
T ss_dssp EEEEEEECCEEEEETTEEEEEECTTCEECGGGGTCCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEeeeEEEEEECCeEEEEcCCCCccchHHHhcCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999997766531
Q ss_pred --------------------------------------eeEEeecceEEEEE---CC---eEEEEeCCCCeeeHhhhhcC
Q psy1917 150 --------------------------------------NFSVSAEGEFQVIK---DG---KILAVMGPGKAFGELAILYN 185 (212)
Q Consensus 150 --------------------------------------~~~i~~~g~~~~~~---~~---~~~~~l~~G~~fGe~~ll~~ 185 (212)
.+|++.+|...+.. ++ ..+..+++|++|||.+++.+
T Consensus 162 ~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~ 241 (291)
T 2qcs_B 162 VSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMN 241 (291)
T ss_dssp CGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEECSGGGTCC
T ss_pred chHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEecHHHHcCC
Confidence 45788888877653 23 37899999999999999999
Q ss_pred CCceeEEEEeccEEEEEEchhhhhccC
Q psy1917 186 CTRTASIRALTPCKVWMLDRRVFQKSA 212 (212)
Q Consensus 186 ~~r~~sv~a~~~~~~~~l~~~~f~~i~ 212 (212)
.+|+++|+|.++|.++.|++++|.+++
T Consensus 242 ~~~~~tv~a~~~~~~~~i~~~~f~~~l 268 (291)
T 2qcs_B 242 RPKAATVVARGPLKCVKLDRPRFERVL 268 (291)
T ss_dssp CCCSSEEEEEEEEEEEEEEHHHHHHHH
T ss_pred CCcceEEEECCcEEEEEEcHHHHHHHh
Confidence 999999999999999999999998763
No 4
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.97 E-value=1.9e-29 Score=209.56 Aligned_cols=176 Identities=40% Similarity=0.683 Sum_probs=161.5
Q ss_pred cceeecccCCHHHHHHHHHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEE
Q psy1917 37 DIQIQRYDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKIL 116 (212)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~ 116 (212)
...+|..+|++++.+.+.++++++++|..++++++..++..+..+.|++|++|+++||.++.+|+|++|.|+++.+++.+
T Consensus 21 ~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~g~~~ 100 (299)
T 3shr_A 21 MQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKL 100 (299)
T ss_dssp -CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEETTEEE
T ss_pred cCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEECCEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCcchhhhhhhCCCcceEEEEEeeeeee-----------------------------------------------
Q psy1917 117 AVMGPGKAFGELAILYNCTRTASIRGFLTVLHF----------------------------------------------- 149 (212)
Q Consensus 117 ~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~----------------------------------------------- 149 (212)
..+.+|++|||++++++.||++|++|.+++..+
T Consensus 101 ~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~ 180 (299)
T 3shr_A 101 CTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKSVPTFQSLPEEILSKLADVL 180 (299)
T ss_dssp EEECTTCEESCSGGGTTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHSCHHHHHHHTTTC
T ss_pred EEeCCCCeeeHhHHhcCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHHhhCHHhhhCCHHHHHHHHHhc
Confidence 999999999999999999999999997777542
Q ss_pred -------------------eeEEeecceEEEEECC------eEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEc
Q psy1917 150 -------------------NFSVSAEGEFQVIKDG------KILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLD 204 (212)
Q Consensus 150 -------------------~~~i~~~g~~~~~~~~------~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~ 204 (212)
.+|++.+|...+.... ..+..+++|++||+.+++.+.+|.++|+|.++|.++.|+
T Consensus 181 ~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~ 260 (299)
T 3shr_A 181 EETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFGEKALQGEDVRTANVIAAEAVTCLVID 260 (299)
T ss_dssp EEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEECGGGGSSSEECSSEEEESSSEEEEEEE
T ss_pred cEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCEeChHHHhCCCCcceEEEECCCEEEEEEe
Confidence 4577888887776543 378899999999999999999999999999999999999
Q ss_pred hhhhhccC
Q psy1917 205 RRVFQKSA 212 (212)
Q Consensus 205 ~~~f~~i~ 212 (212)
+++|.+++
T Consensus 261 ~~~f~~ll 268 (299)
T 3shr_A 261 RDSFKHLI 268 (299)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998763
No 5
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.3e-29 Score=199.56 Aligned_cols=162 Identities=26% Similarity=0.463 Sum_probs=148.4
Q ss_pred HHHHHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhh
Q psy1917 51 QLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAI 130 (212)
Q Consensus 51 ~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~l 130 (212)
+.+.++|+++++|..++++++..++..++.+.|++|++|+++||+++.+|+|++|.++++.+++.+..+++|++|||+++
T Consensus 3 ~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~~~~~~~~~~g~~fGe~~l 82 (246)
T 3of1_A 3 QRLEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVNDNKVNSSGPGSSFGELAL 82 (246)
T ss_dssp HHHHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEESTTSCCEEECTTCEECHHHH
T ss_pred HHHHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEECCEEEEecCCCCeeehhHH
Confidence 45788999999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred hhCCCcceEEEEEeeeeee-------------------------------------------------------------
Q psy1917 131 LYNCTRTASIRGFLTVLHF------------------------------------------------------------- 149 (212)
Q Consensus 131 l~~~~r~a~v~a~~~~~~~------------------------------------------------------------- 149 (212)
+++.+++++++|.+++..+
T Consensus 83 ~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~ 162 (246)
T 3of1_A 83 MYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIRE 162 (246)
T ss_dssp HHTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECT
T ss_pred hcCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeC
Confidence 9999999999997776531
Q ss_pred -----eeEEeecceEEEEECCe-EEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhhhhccC
Q psy1917 150 -----NFSVSAEGEFQVIKDGK-ILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQKSA 212 (212)
Q Consensus 150 -----~~~i~~~g~~~~~~~~~-~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~~i~ 212 (212)
.+|++.+|...+..... .+..+++|++|||.+++.+.+|.++|+|.++|.++.|++++|.+++
T Consensus 163 g~~~~~~y~I~~G~v~v~~~~~~~~~~l~~g~~fGe~~~~~~~~~~~~v~a~~~~~~~~i~~~~f~~ll 231 (246)
T 3of1_A 163 GDQGENFYLIEYGAVDVSKKGQGVINKLKDHDYFGEVALLNDLPRQATVTATKRTKVATLGKSGFQRLL 231 (246)
T ss_dssp TSBCCEEEEEEECEEEEEETTTEEEEEEETTCEECHHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHC
T ss_pred CCcCCEEEEEEecEEEEEEcCCceEEEcCCCCcccHHHHhCCCCcccEEEECCCEEEEEEeHHHHHHHh
Confidence 35677777776666554 7899999999999999999999999999999999999999999875
No 6
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.94 E-value=1.3e-25 Score=213.91 Aligned_cols=104 Identities=16% Similarity=0.279 Sum_probs=97.4
Q ss_pred eeecccCCHHHHHHHHHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEEC------
Q psy1917 39 QIQRYDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKD------ 112 (212)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~------ 112 (212)
.++...|++++.+.|...|+++.+|..+++.++.+|+.+|.++.|++|++||++||.++++|+|++|.|.|+..
T Consensus 26 ~K~p~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~ 105 (999)
T 4f7z_A 26 DKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQ 105 (999)
T ss_dssp HSCSSSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTT
T ss_pred cCCcccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCC
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999973
Q ss_pred -CEEEEEeCCCCcchhhhhhhCCCcceEEEEE
Q psy1917 113 -GKILAVMGPGKAFGELAILYNCTRTASIRGF 143 (212)
Q Consensus 113 -~~~~~~l~~g~~fGe~~ll~~~~r~a~v~a~ 143 (212)
+..++.+.+|++||| ++++|.||+|||+|.
T Consensus 106 ~~~~v~~l~~G~sFGE-all~n~pRtaTv~a~ 136 (999)
T 4f7z_A 106 DAVTICTLGIGTAFGE-SILDNTPRHATIVTR 136 (999)
T ss_dssp SCEEEEEEETTCEECG-GGGGTCCCSSEEEES
T ss_pred CceeEEEecCCcchhh-hhccCCCcceEEEec
Confidence 347899999999999 999999999999994
No 7
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.93 E-value=9.8e-25 Score=164.39 Aligned_cols=142 Identities=25% Similarity=0.504 Sum_probs=114.5
Q ss_pred CCCCCcEEeeccCCCCCCCcceeecccCCHHHHHHHHHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCC
Q psy1917 18 NSKKQGVSGESSTNGQTANDIQIQRYDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGN 97 (212)
Q Consensus 18 ~~~r~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~ 97 (212)
++||.+||+|+...... ..+..+..+++.++.+.+.++|+++++|..|+++++..++..++.+.|++|++|+++|+.++
T Consensus 2 ~~~~~~vs~e~~~~~~~-~~~~~~~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~ 80 (154)
T 3pna_A 2 RRRRGAISAEVYTEEDA-ASYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGD 80 (154)
T ss_dssp ---------------------CCCCCCCCHHHHHHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCC
T ss_pred CcccccccccccCCCCc-cccccccCCCCHHHHHHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCC
Confidence 35778999999876544 34667778999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCee
Q psy1917 98 DLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAF 177 (212)
Q Consensus 98 ~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~f 177 (212)
++|+|++|.++++.+ ++.+..+++|++|
T Consensus 81 ~~y~i~~G~v~~~~~----------------------------------------------------~~~~~~~~~G~~f 108 (154)
T 3pna_A 81 NFYVIDQGEMDVYVN----------------------------------------------------NEWATSVGEGGSF 108 (154)
T ss_dssp EEEEEEESCEEEEET----------------------------------------------------TEEEEEECTTCEE
T ss_pred eEEEEEecEEEEEEC----------------------------------------------------CEEEEEecCCCEe
Confidence 999999999999774 3457789999999
Q ss_pred eHhhhhcCCCceeEEEEeccEEEEEEchhhhhccC
Q psy1917 178 GELAILYNCTRTASIRALTPCKVWMLDRRVFQKSA 212 (212)
Q Consensus 178 Ge~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~~i~ 212 (212)
|+.+++.+.++.++++|.++|.++.|++++|.+++
T Consensus 109 Ge~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~ll 143 (154)
T 3pna_A 109 GELALIYGTPRAATVKAKTNVKLWGIDRDSYRRIL 143 (154)
T ss_dssp CCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHT
T ss_pred eehHhhcCCCcceEEEECcceEEEEEeHHHHHHHH
Confidence 99999999999999999999999999999999875
No 8
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.93 E-value=1.3e-24 Score=164.75 Aligned_cols=146 Identities=25% Similarity=0.431 Sum_probs=126.4
Q ss_pred CCCCcEEeeccCCCCCC-CcceeecccCCHHHHHHHHHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCC
Q psy1917 19 SKKQGVSGESSTNGQTA-NDIQIQRYDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGN 97 (212)
Q Consensus 19 ~~r~~v~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~ 97 (212)
.||.+|+||+..+.... ..+..+..++++++.+.+.++|+++++|..|+++++..++..++.+.|++|++|+++|+.++
T Consensus 1 ~rr~~v~ae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~ 80 (161)
T 3idb_B 1 TRRASVCAEAYNPDEEEDDAESRIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGD 80 (161)
T ss_dssp CCCCCEECCCCCTTC--------CCCCCCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCC
T ss_pred CCceeEEeccCCccchhcccCCcccCCCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCc
Confidence 37899999999865543 45567778999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCee
Q psy1917 98 DLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAF 177 (212)
Q Consensus 98 ~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~f 177 (212)
++|+|++|.|+++.. .+|+.. .+..+++|++|
T Consensus 81 ~~y~i~~G~v~~~~~------------------------------------------~~g~~~------~~~~~~~G~~f 112 (161)
T 3idb_B 81 NFYVIDRGTFDIYVK------------------------------------------CDGVGR------CVGNYDNRGSF 112 (161)
T ss_dssp EEEEEEESEEEEEEE------------------------------------------ETTEEE------EEEEEESCCEE
T ss_pred EEEEEEeCEEEEEEc------------------------------------------CCCCeE------EEEEcCCCCEe
Confidence 999999999999762 223222 48889999999
Q ss_pred eHhhhhcCCCceeEEEEeccEEEEEEchhhhhccC
Q psy1917 178 GELAILYNCTRTASIRALTPCKVWMLDRRVFQKSA 212 (212)
Q Consensus 178 Ge~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~~i~ 212 (212)
|+.+++.+.++.++++|.++|.++.|++++|.+++
T Consensus 113 Ge~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~ 147 (161)
T 3idb_B 113 GELALMYNTPRAATITATSPGALWGLDRVTFRRII 147 (161)
T ss_dssp CGGGGTCCCCCSSEEEESSSEEEEEEEHHHHHHHH
T ss_pred chHHHHcCCCcccEEEECCCeEEEEEeHHHHHHHH
Confidence 99999999999999999999999999999998763
No 9
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.92 E-value=7.4e-24 Score=186.06 Aligned_cols=122 Identities=15% Similarity=0.212 Sum_probs=102.8
Q ss_pred cccCCCCCcEEeeccCCCCCCCcceeecccCCHHHHHHHHHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCC
Q psy1917 15 QLLNSKKQGVSGESSTNGQTANDIQIQRYDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGE 94 (212)
Q Consensus 15 l~~~~~r~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd 94 (212)
+....+|.++++|... ...++...|++++.+.+.+.|+++++|..|+++++..++..+..+.|++|++|+++||
T Consensus 8 ~~~~~~~~~~~~e~~~------~l~~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd 81 (469)
T 1o7f_A 8 VAAHAAHSQSSAEWIA------CLDKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGD 81 (469)
T ss_dssp -----------CHHHH------HHTSCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTS
T ss_pred hhhccccccCcHHHHH------HhcCChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCC
Confidence 3456778889998843 3567788999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEecCEEEEEEC---C----EEEEEeCCCCcchhhhhhhCCCcceEEEEE
Q psy1917 95 AGNDLFVSAEGEFQVIKD---G----KILAVMGPGKAFGELAILYNCTRTASIRGF 143 (212)
Q Consensus 95 ~~~~~yiI~~G~v~v~~~---~----~~~~~l~~g~~fGe~~ll~~~~r~a~v~a~ 143 (212)
.++.+|+|++|.|+++.. | ..+..+++|++|||++ +++.+++++++|.
T Consensus 82 ~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~~~G~~fGe~~-l~~~~~~~tv~A~ 136 (469)
T 1o7f_A 82 IGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGESI-LDNTPRHATIVTR 136 (469)
T ss_dssp BCCEEEEEEESCEEEEECSSSCGGGCEEEEEECTTCEECGGG-GGTCBCSSEEEES
T ss_pred CCCcEEEEEeeEEEEEEecCCCCCcceEEEEccCCCCcchhh-hCCCCccceEEEc
Confidence 999999999999999973 2 5889999999999999 9999999999993
No 10
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.89 E-value=2.3e-22 Score=148.62 Aligned_cols=123 Identities=49% Similarity=0.855 Sum_probs=115.0
Q ss_pred ceeecccCCHHHHHHHHHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEE
Q psy1917 38 IQIQRYDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILA 117 (212)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~ 117 (212)
..+|..++++.+.+.+.++|+++++|..++++++..++..++.+.|++|++|+++|+.++.+|+|++|.|+++.+
T Consensus 6 ~~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~----- 80 (139)
T 3ocp_A 6 VTLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKE----- 80 (139)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEET-----
T ss_pred ccCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEEC-----
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999663
Q ss_pred EeCCCCcchhhhhhhCCCcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEecc
Q psy1917 118 VMGPGKAFGELAILYNCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTP 197 (212)
Q Consensus 118 ~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~ 197 (212)
|+.+..+++|++||+.+++.+.++.++++|.++
T Consensus 81 -----------------------------------------------g~~~~~~~~G~~fGe~~~l~~~~~~~~~~a~~~ 113 (139)
T 3ocp_A 81 -----------------------------------------------GVKLCTMGPGKVFGELAILYNCTRTATVKTLVN 113 (139)
T ss_dssp -----------------------------------------------TEEEEEECTTCEESCHHHHHCCCCSSEEEESSC
T ss_pred -----------------------------------------------CEEEEEeCCCCEeccHHHHCCCCcceEEEECcc
Confidence 346888999999999999999999999999999
Q ss_pred EEEEEEchhhhhccC
Q psy1917 198 CKVWMLDRRVFQKSA 212 (212)
Q Consensus 198 ~~~~~l~~~~f~~i~ 212 (212)
|.++.|++++|.+++
T Consensus 114 ~~v~~i~~~~~~~l~ 128 (139)
T 3ocp_A 114 VKLWAIDRQCFQTIM 128 (139)
T ss_dssp EEEEEEEHHHHHHHH
T ss_pred eEEEEEcHHHHHHHH
Confidence 999999999998763
No 11
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.85 E-value=1.2e-20 Score=146.77 Aligned_cols=127 Identities=22% Similarity=0.308 Sum_probs=113.5
Q ss_pred ceeecccCCHHHHHHHHHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEE
Q psy1917 38 IQIQRYDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILA 117 (212)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~ 117 (212)
..+...++++...+.+.++|+++|+|..++++++..++..+..+.|++|++|+++|++++.+|+|++|.|+++..
T Consensus 22 ~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~----- 96 (187)
T 3gyd_A 22 PDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKD----- 96 (187)
T ss_dssp GGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEE-----
T ss_pred hHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEE-----
Confidence 345566677778888899999999999999999999999999999999999999999999999999999999872
Q ss_pred EeCCCCcchhhhhhhCCCcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEecc
Q psy1917 118 VMGPGKAFGELAILYNCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTP 197 (212)
Q Consensus 118 ~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~ 197 (212)
..+|+.. .+..+++|++||+.+++.+.++.++++|.++
T Consensus 97 ------------------------------------~~~g~~~------~~~~~~~G~~fGe~~~l~~~~~~~~v~A~~~ 134 (187)
T 3gyd_A 97 ------------------------------------IPNKGIQ------TIAKVGAGAIIGEMSMIDGMPRSASCVASLP 134 (187)
T ss_dssp ------------------------------------ETTTEEE------EEEEEETTCEESHHHHHHCCCCSSEEEEEEE
T ss_pred ------------------------------------CCCCCeE------EEEEccCCCeeeeHHHhCCCCeeEEEEECCC
Confidence 2334333 4889999999999999999999999999999
Q ss_pred EEEEEEchhhhhcc
Q psy1917 198 CKVWMLDRRVFQKS 211 (212)
Q Consensus 198 ~~~~~l~~~~f~~i 211 (212)
|.++.|++++|.++
T Consensus 135 ~~v~~i~~~~~~~l 148 (187)
T 3gyd_A 135 TDFAVLSRDALYQL 148 (187)
T ss_dssp EEEEEEEHHHHHHH
T ss_pred eEEEEEcHHHHHHH
Confidence 99999999999876
No 12
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.84 E-value=6e-21 Score=140.19 Aligned_cols=119 Identities=13% Similarity=0.188 Sum_probs=107.4
Q ss_pred cccCCHHHHHHHHHHhhcCccCCCCCHHHHHHHHhhceEEEec-CCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeC
Q psy1917 42 RYDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYK-ADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMG 120 (212)
Q Consensus 42 ~~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~-~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~ 120 (212)
...++.++.+.+.++|+++++|..|+++++..++..++.+.|+ +|++|+++|+.++.+|||++|.|+++..
T Consensus 3 p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~-------- 74 (134)
T 2d93_A 3 SGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHP-------- 74 (134)
T ss_dssp CSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECS--------
T ss_pred hhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcC--------
Confidence 3456777888889999999999999999999999999999999 9999999999999999999999999752
Q ss_pred CCCcchhhhhhhCCCcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEE-EEeccEE
Q psy1917 121 PGKAFGELAILYNCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASI-RALTPCK 199 (212)
Q Consensus 121 ~g~~fGe~~ll~~~~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv-~a~~~~~ 199 (212)
+|+. ..+++|++||+.+++.+.++.+++ +|.++|.
T Consensus 75 -------------------------------------------~g~~-~~l~~G~~fG~~~~~~~~~~~~~~~~a~~~~~ 110 (134)
T 2d93_A 75 -------------------------------------------DGKV-ENLFMGNSFGITPTLDKQYMHGIVRTKVDDCQ 110 (134)
T ss_dssp -------------------------------------------SSCE-EEECTTCEESCCSSSCCEECCSEEEESSSSEE
T ss_pred -------------------------------------------CCcE-EEecCCCccChhHhcCCCcceeEEEEEecceE
Confidence 2333 568899999999999999999999 9999999
Q ss_pred EEEEchhhhhccC
Q psy1917 200 VWMLDRRVFQKSA 212 (212)
Q Consensus 200 ~~~l~~~~f~~i~ 212 (212)
++.|++++|.+++
T Consensus 111 ~~~i~~~~~~~l~ 123 (134)
T 2d93_A 111 FVCIAQQDYWRIL 123 (134)
T ss_dssp EEEEEHHHHHHHS
T ss_pred EEEEeHHHHHHHH
Confidence 9999999998874
No 13
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.83 E-value=2.2e-20 Score=146.20 Aligned_cols=118 Identities=24% Similarity=0.399 Sum_probs=105.5
Q ss_pred cCCHHHHHHHHHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCC
Q psy1917 44 DKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGK 123 (212)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~ 123 (212)
.+.+-..+...++++++|+|.+++++.+..++..++.+.|++|++|+++||.++.+|||.+|.|+++..
T Consensus 60 Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~----------- 128 (198)
T 2ptm_A 60 IRQDVANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMS----------- 128 (198)
T ss_dssp HHHHHHHHHTHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECT-----------
T ss_pred HHHHHHHHHHHHHHhcCcchhcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEec-----------
Confidence 333334455678899999999999999999999999999999999999999999999999999999752
Q ss_pred cchhhhhhhCCCcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEE
Q psy1917 124 AFGELAILYNCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWML 203 (212)
Q Consensus 124 ~fGe~~ll~~~~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l 203 (212)
+|+.+..+++|++||+.+++.+.++.++++|.++|.++.|
T Consensus 129 ----------------------------------------~g~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~i 168 (198)
T 2ptm_A 129 ----------------------------------------DGVIATSLSDGSYFGEICLLTRERRVASVKCETYCTLFSL 168 (198)
T ss_dssp ----------------------------------------TSCEEEEECTTCEESCHHHHHSSCCSSEEEESSCEEEEEE
T ss_pred ----------------------------------------CCeEEEEecCCCEechHHHcCCCccceEEEEeeEEEEEEE
Confidence 3446889999999999999999999999999999999999
Q ss_pred chhhhhccC
Q psy1917 204 DRRVFQKSA 212 (212)
Q Consensus 204 ~~~~f~~i~ 212 (212)
++++|.+++
T Consensus 169 ~~~~f~~ll 177 (198)
T 2ptm_A 169 SVQHFNQVL 177 (198)
T ss_dssp EHHHHHHHH
T ss_pred eHHHHHHHH
Confidence 999998763
No 14
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.82 E-value=3.5e-20 Score=136.57 Aligned_cols=113 Identities=17% Similarity=0.282 Sum_probs=97.8
Q ss_pred HHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCC
Q psy1917 55 AAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNC 134 (212)
Q Consensus 55 ~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~ 134 (212)
+.|+++|+|.+++++++..++..++.+.|++|++|+++|++++.+|+|++|.++++...
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--------------------- 64 (142)
T 3mdp_A 6 ERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSN--------------------- 64 (142)
T ss_dssp TGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC----------------------
T ss_pred HHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEEC---------------------
Confidence 46899999999999999999999999999999999999999999999999999998632
Q ss_pred CcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhhhhcc
Q psy1917 135 TRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQKS 211 (212)
Q Consensus 135 ~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~~i 211 (212)
.+|+... .+.+..+++|++||+.+++.+.++.++++|.++|.++.|++++|.++
T Consensus 65 --------------------~~g~~~~---~~~~~~~~~G~~fG~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l 118 (142)
T 3mdp_A 65 --------------------GGAGSAA---NSTVCSVVPGAIFGVSSLIKPYHYTSSARATKPVRVVDINGARLREM 118 (142)
T ss_dssp -------------------------------CEEEEECTTCEECGGGSSTTCBCSSEEEESSCEEEEEEEHHHHHHH
T ss_pred --------------------CCCCceE---eeeEEEecCCCEechHHHcCCCCceEEEEECCcEEEEEEeHHHHHHH
Confidence 1111100 11278899999999999999999999999999999999999999875
No 15
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.82 E-value=1.2e-19 Score=136.48 Aligned_cols=120 Identities=18% Similarity=0.334 Sum_probs=104.8
Q ss_pred ecccCCHHHHHHHHHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeC
Q psy1917 41 QRYDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMG 120 (212)
Q Consensus 41 ~~~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~ 120 (212)
|...+.+-..+...++++++++|.+++++++..++..++.+.|++|++|+++|++++++|+|.+|.++++.+
T Consensus 13 p~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~-------- 84 (160)
T 4f8a_A 13 PKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD-------- 84 (160)
T ss_dssp --CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET--------
T ss_pred CHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC--------
Confidence 333344444556678999999999999999999999999999999999999999999999999999999763
Q ss_pred CCCcchhhhhhhCCCcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcC--CCceeEEEEeccE
Q psy1917 121 PGKAFGELAILYNCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYN--CTRTASIRALTPC 198 (212)
Q Consensus 121 ~g~~fGe~~ll~~~~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~--~~r~~sv~a~~~~ 198 (212)
+..+..+++|++||+.+++.+ .++.++++|.++|
T Consensus 85 --------------------------------------------~~~~~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~ 120 (160)
T 4f8a_A 85 --------------------------------------------DEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYC 120 (160)
T ss_dssp --------------------------------------------TEEEEEEETTCEEECCTTTCSSCCBCSSEEEESSCE
T ss_pred --------------------------------------------CEEEEEecCCCEeCcHHHhcCcccceEEEEEECCce
Confidence 235788899999999999988 6999999999999
Q ss_pred EEEEEchhhhhccC
Q psy1917 199 KVWMLDRRVFQKSA 212 (212)
Q Consensus 199 ~~~~l~~~~f~~i~ 212 (212)
.++.|++++|.+++
T Consensus 121 ~v~~i~~~~~~~l~ 134 (160)
T 4f8a_A 121 DLHVIKRDALQKVL 134 (160)
T ss_dssp EEEEEEHHHHHHHH
T ss_pred EEEEEcHHHHHHHH
Confidence 99999999998763
No 16
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.82 E-value=1.1e-19 Score=135.76 Aligned_cols=115 Identities=17% Similarity=0.399 Sum_probs=101.3
Q ss_pred HHHHHHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhh
Q psy1917 50 KQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELA 129 (212)
Q Consensus 50 ~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ 129 (212)
...+.++++++++|..++++++..++..++.+.|++|++|+++|++++.+|+|++|.++++...
T Consensus 7 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~---------------- 70 (154)
T 2z69_A 7 QRVHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLT---------------- 70 (154)
T ss_dssp HHHHHHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCC----------------
T ss_pred ChhHHHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEEC----------------
Confidence 3456788999999999999999999999999999999999999999999999999999998632
Q ss_pred hhhCCCcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCC-ceeEEEEeccEEEEEEchhhh
Q psy1917 130 ILYNCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCT-RTASIRALTPCKVWMLDRRVF 208 (212)
Q Consensus 130 ll~~~~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~-r~~sv~a~~~~~~~~l~~~~f 208 (212)
.+|+. ..+..+++|++||+.+++.+.+ +.++++|.++|.++.|++++|
T Consensus 71 -------------------------~~g~~------~~~~~~~~G~~~G~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~ 119 (154)
T 2z69_A 71 -------------------------PEGQE------KILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAY 119 (154)
T ss_dssp -------------------------C-----------CCEEECTTEEESGGGGGSSCSBCSSEEEESSSEEEEEEEHHHH
T ss_pred -------------------------CCCCE------EEEEEccCCCeeccHhhccCCCCCceEEEEccceEEEEECHHHH
Confidence 12221 2478999999999999999988 999999999999999999999
Q ss_pred hcc
Q psy1917 209 QKS 211 (212)
Q Consensus 209 ~~i 211 (212)
.++
T Consensus 120 ~~l 122 (154)
T 2z69_A 120 LRQ 122 (154)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 17
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.82 E-value=1.1e-19 Score=133.60 Aligned_cols=110 Identities=23% Similarity=0.336 Sum_probs=101.2
Q ss_pred HHHHHHHHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchh
Q psy1917 48 RSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGE 127 (212)
Q Consensus 48 ~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe 127 (212)
++.....++++++++|..++++++..++..++.+.|++|++|+++|+.++.+|+|.+|.++++..+
T Consensus 4 ~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~-------------- 69 (138)
T 1vp6_A 4 GDFVRNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN-------------- 69 (138)
T ss_dssp HHHHHHHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS--------------
T ss_pred hhHHHHHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC--------------
Confidence 456677889999999999999999999999999999999999999999999999999999997631
Q ss_pred hhhhhCCCcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhh
Q psy1917 128 LAILYNCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRV 207 (212)
Q Consensus 128 ~~ll~~~~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~ 207 (212)
...+++|++||+.+++.+.++.++++|.++|.++.|++++
T Consensus 70 ----------------------------------------~~~~~~G~~~G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~ 109 (138)
T 1vp6_A 70 ----------------------------------------PVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSAD 109 (138)
T ss_dssp ----------------------------------------CEEECTTCEECHHHHHHCCCCSSCEEESSSEEEEEEEHHH
T ss_pred ----------------------------------------cceECCCCEeeehHhccCCCceeEEEECCCEEEEEECHHH
Confidence 2368999999999999999999999999999999999999
Q ss_pred hhcc
Q psy1917 208 FQKS 211 (212)
Q Consensus 208 f~~i 211 (212)
|.++
T Consensus 110 ~~~l 113 (138)
T 1vp6_A 110 FQML 113 (138)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 18
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.82 E-value=8.1e-20 Score=135.55 Aligned_cols=111 Identities=30% Similarity=0.450 Sum_probs=100.3
Q ss_pred HHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhC
Q psy1917 54 KAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYN 133 (212)
Q Consensus 54 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~ 133 (212)
.++++++++|..++++++..++..+..+.|++|++|+++|++++.+|+|++|.++++..
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~--------------------- 62 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRT--------------------- 62 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEE---------------------
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEE---------------------
Confidence 46789999999999999999999999999999999999999999999999999999872
Q ss_pred CCcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhhhhcc
Q psy1917 134 CTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQKS 211 (212)
Q Consensus 134 ~~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~~i 211 (212)
..+|+.. .+..+++|++||+.+++.+.++.++++|.++|.++.|++++|.++
T Consensus 63 --------------------~~~g~~~------~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l 114 (149)
T 2pqq_A 63 --------------------SPDGREN------MLAVVGPSELIGELSLFDPGPRTATGTALTEVKLLALGHGDLQPW 114 (149)
T ss_dssp --------------------CTTSSEE------EEEEECTTCEESGGGGTSCEECSSEEEESSCEEEEEEEGGGHHHH
T ss_pred --------------------CCCCcEE------EEEEcCCcCEechHHhcCCCCcceEEEEccceEEEEEeHHHHHHH
Confidence 2233322 488999999999999999999999999999999999999999875
No 19
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.81 E-value=4.6e-20 Score=147.94 Aligned_cols=145 Identities=20% Similarity=0.351 Sum_probs=116.7
Q ss_pred CCCCCCcccccccCCCCC-cEEeeccCCCCCCCcceeeccc-CC-HHHHHHHHHHhhcCccCCCCCHHHHHHHHhhceEE
Q psy1917 5 DPLSSLGKVGQLLNSKKQ-GVSGESSTNGQTANDIQIQRYD-KD-FRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQA 81 (212)
Q Consensus 5 ~~g~~fge~~l~~~~~r~-~v~~e~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~ 81 (212)
.||+.|||++++.+.+|. ++.|......+......+.... .. ......+..++++.++|..++++++..++..+..+
T Consensus 72 ~~g~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~ 151 (246)
T 3of1_A 72 GPGSSFGELALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLKSMPVLKSLTTYDRAKLADALDTK 151 (246)
T ss_dssp CTTCEECHHHHHHTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHHHHCGGGTTCCHHHHHHHHHTCEEE
T ss_pred CCCCeeehhHHhcCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHHhhChhhhcCCHHHHHHHHHhhheE
Confidence 589999999999998886 4555443322222221111111 11 22344556789999999999999999999999999
Q ss_pred EecCCCeEEccCCCCCeeEEEecCEEEEEECCE-EEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 82 EYKADSYVITEGEAGNDLFVSAEGEFQVIKDGK-ILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 82 ~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~-~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
.|++|++|+++|+.++.+|+|.+|.++++..+. .+..+++|++|||++++.+.||+++++|.+++..+
T Consensus 152 ~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~~~~~l~~g~~fGe~~~~~~~~~~~~v~a~~~~~~~ 220 (246)
T 3of1_A 152 IYQPGETIIREGDQGENFYLIEYGAVDVSKKGQGVINKLKDHDYFGEVALLNDLPRQATVTATKRTKVA 220 (246)
T ss_dssp EECTTCEEECTTSBCCEEEEEEECEEEEEETTTEEEEEEETTCEECHHHHHHTCBCSSEEEESSCEEEE
T ss_pred EeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCceEEEcCCCCcccHHHHhCCCCcccEEEECCCEEEE
Confidence 999999999999999999999999999999765 79999999999999999999999999998776554
No 20
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.80 E-value=1.4e-19 Score=142.03 Aligned_cols=111 Identities=25% Similarity=0.437 Sum_probs=99.6
Q ss_pred HHHHHHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhh
Q psy1917 50 KQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELA 129 (212)
Q Consensus 50 ~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ 129 (212)
.....++|+++|+|.+++++.+..++..++.+.|++|++|+++||.++.+|||.+|.|+++..+
T Consensus 67 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~---------------- 130 (202)
T 3bpz_A 67 NFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKG---------------- 130 (202)
T ss_dssp HHHTHHHHHTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECTT----------------
T ss_pred HHHHHHHHhcCCchhcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEECC----------------
Confidence 3455678999999999999999999999999999999999999999999999999999996521
Q ss_pred hhhCCCcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhhhh
Q psy1917 130 ILYNCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQ 209 (212)
Q Consensus 130 ll~~~~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~ 209 (212)
|+ ...+++|++||+.+++.+.++.++|+|.++|.++.|++++|.
T Consensus 131 -----------------------------------g~-~~~l~~G~~fGe~~~~~~~~~~~~v~a~~~~~l~~i~~~~f~ 174 (202)
T 3bpz_A 131 -----------------------------------NK-EMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFN 174 (202)
T ss_dssp -----------------------------------SC-CEEEETTCEECHHHHHHCSBCSSEEEESSCEEEEEEEHHHHH
T ss_pred -----------------------------------Ce-EEEEcCCCEeccHHHhcCCCcccEEEEeeEEEEEEEEHHHHH
Confidence 22 236899999999999999999999999999999999999998
Q ss_pred ccC
Q psy1917 210 KSA 212 (212)
Q Consensus 210 ~i~ 212 (212)
+++
T Consensus 175 ~ll 177 (202)
T 3bpz_A 175 EVL 177 (202)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 21
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.79 E-value=9.1e-19 Score=137.98 Aligned_cols=108 Identities=22% Similarity=0.418 Sum_probs=96.4
Q ss_pred hhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCc
Q psy1917 57 IMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTR 136 (212)
Q Consensus 57 l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r 136 (212)
|+++|+|.+++++++..++..++.+.|++|++|+++|++++.+|+|.+|.|+++..
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~------------------------ 56 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRT------------------------ 56 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEE------------------------
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEE------------------------
Confidence 57899999999999999999999999999999999999999999999999999872
Q ss_pred ceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhhhhcc
Q psy1917 137 TASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQKS 211 (212)
Q Consensus 137 ~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~~i 211 (212)
..+|+.. .+..+++|++||+.+++.+.++.++++|.++|.++.+++++|.++
T Consensus 57 -----------------~~~g~~~------~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l 108 (216)
T 4ev0_A 57 -----------------HLGGQER------TLALLGPGELFGEMSLLDEGERSASAVAVEDTELLALFREDYLAL 108 (216)
T ss_dssp -----------------CSSSCEE------EEEEECTTCEECHHHHHHCCBCSSEEEESSSEEEEEEEHHHHHHH
T ss_pred -----------------CCCCCEE------EEEEecCCCEEeehhhcCCCCcceEEEEcCCEEEEEEcHHHHHHH
Confidence 2333332 488999999999999999999999999999999999999999875
No 22
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.79 E-value=5.2e-19 Score=140.68 Aligned_cols=113 Identities=20% Similarity=0.471 Sum_probs=102.1
Q ss_pred HHHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhh
Q psy1917 53 IKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILY 132 (212)
Q Consensus 53 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~ 132 (212)
+.++++++|+|..++++++..++..++.+.|++|++|+++||+++.+|+|.+|.|+++..
T Consensus 4 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~-------------------- 63 (227)
T 3d0s_A 4 MDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRR-------------------- 63 (227)
T ss_dssp CHHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEE--------------------
T ss_pred HHHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEE--------------------
Confidence 356799999999999999999999999999999999999999999999999999999872
Q ss_pred CCCcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhhhhccC
Q psy1917 133 NCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQKSA 212 (212)
Q Consensus 133 ~~~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~~i~ 212 (212)
..+|+.. .+..+++|++||+.+++.+.++.++++|.++|.++.|++++|.+++
T Consensus 64 ---------------------~~~g~~~------~~~~~~~G~~~G~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~ 116 (227)
T 3d0s_A 64 ---------------------APDGREN------LLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWI 116 (227)
T ss_dssp ---------------------CTTSCEE------EEEEECTTCEESCHHHHSCSCCSSEEEESSCEEEEEEEHHHHHHTT
T ss_pred ---------------------CCCCcEE------EEEEecCCCEEeeHHHcCCCCceeEEEEcccEEEEEEeHHHHHHHH
Confidence 2233332 4889999999999999999999999999999999999999998764
No 23
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.79 E-value=1e-18 Score=135.77 Aligned_cols=111 Identities=10% Similarity=0.067 Sum_probs=99.6
Q ss_pred HHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhC
Q psy1917 54 KAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYN 133 (212)
Q Consensus 54 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~ 133 (212)
..+++.+++|.+|+++++..++..+..+.|++|++|+++||+++++|+|.+|.|+++.
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~---------------------- 63 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFF---------------------- 63 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE----------------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEE----------------------
Confidence 3567889999999999999999999999999999999999999999999999999987
Q ss_pred CCcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHh-hhhcCCCceeEEEEeccEEEEEEchhhhhcc
Q psy1917 134 CTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGEL-AILYNCTRTASIRALTPCKVWMLDRRVFQKS 211 (212)
Q Consensus 134 ~~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~-~ll~~~~r~~sv~a~~~~~~~~l~~~~f~~i 211 (212)
...+|+.. .+..++||++||+. +++.+.++.++++|+++|.++.|++++|.++
T Consensus 64 -------------------~~~~G~e~------~~~~~~~g~~~ge~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l 117 (194)
T 3dn7_A 64 -------------------IDEKGIEQ------TTQFAIENWWLSDYMAFQKQQPADFYIQSVENCELLSITYTEQENL 117 (194)
T ss_dssp -------------------ECTTSCEE------EEEEEETTCEECCHHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHH
T ss_pred -------------------ECCCCCEE------EEEEccCCcEEeehHHHhcCCCCceEEEEECCEEEEEEeHHHHHHH
Confidence 23344433 48899999999987 7788999999999999999999999999875
No 24
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.79 E-value=6.3e-19 Score=140.53 Aligned_cols=111 Identities=24% Similarity=0.397 Sum_probs=100.6
Q ss_pred HHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhC
Q psy1917 54 KAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYN 133 (212)
Q Consensus 54 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~ 133 (212)
.++|+++|+|..|+++++..++..++.+.|++|++|+++|++++.+|+|.+|.|+++..
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~--------------------- 63 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRV--------------------- 63 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEE---------------------
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEE---------------------
Confidence 57899999999999999999999999999999999999999999999999999999872
Q ss_pred CCcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhhhhcc
Q psy1917 134 CTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQKS 211 (212)
Q Consensus 134 ~~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~~i 211 (212)
..+|+.. .+..+++|++||+.+++.+.++.++++|.++|.++.|++++|.++
T Consensus 64 --------------------~~~g~~~------~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l 115 (231)
T 3e97_A 64 --------------------SLGGRER------VLGDIYAPGVVGETAVLAHQERSASVRALTPVRTLMLHREHFELI 115 (231)
T ss_dssp --------------------CC--CEE------EEEEEESSEEESTTTTTCCCCCCEEEEESSCEEEEEECHHHHHHH
T ss_pred --------------------CCCCceE------EEEecCCCCEEeeHHHhCCCCceEEEEECCcEEEEEEeHHHHHHH
Confidence 2334333 488999999999999999999999999999999999999999875
No 25
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.78 E-value=1.2e-18 Score=139.48 Aligned_cols=113 Identities=21% Similarity=0.349 Sum_probs=102.5
Q ss_pred HHHHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhh
Q psy1917 52 LIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAIL 131 (212)
Q Consensus 52 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll 131 (212)
...++|+++|+|..|+++++..++..++.+.|++|++|+++|++++++|+|.+|.|+++..
T Consensus 8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~------------------- 68 (237)
T 3fx3_A 8 AQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRM------------------- 68 (237)
T ss_dssp HHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEE-------------------
T ss_pred HHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEE-------------------
Confidence 4567899999999999999999999999999999999999999999999999999999872
Q ss_pred hCCCcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhhhhcc
Q psy1917 132 YNCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQKS 211 (212)
Q Consensus 132 ~~~~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~~i 211 (212)
..+|+.. .+..+++|++||+.+++.+.++.++++|.++|.++.|++++|.++
T Consensus 69 ----------------------~~~G~~~------~~~~~~~G~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l 120 (237)
T 3fx3_A 69 ----------------------TPTGSEA------VVSVFTRGESFGEAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSL 120 (237)
T ss_dssp ----------------------CTTSCEE------EEEEEETTEEECHHHHHHTCCCSSEEEESSSEEEEEEEHHHHHHH
T ss_pred ----------------------CCCCCEE------EEEEeCCCCEechHHHhcCCCCCceEEECCceEEEEEcHHHHHHH
Confidence 2334333 488999999999999999999999999999999999999999875
No 26
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.78 E-value=1.7e-18 Score=145.51 Aligned_cols=110 Identities=21% Similarity=0.376 Sum_probs=100.6
Q ss_pred HHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCC
Q psy1917 55 AAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNC 134 (212)
Q Consensus 55 ~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~ 134 (212)
++|+++|+|..|+++++..++..++.+.|++|++|+++||+++.+|+|++|.|+++..+
T Consensus 13 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~--------------------- 71 (333)
T 4ava_A 13 EDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVG--------------------- 71 (333)
T ss_dssp HHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEEC---------------------
T ss_pred HHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEEC---------------------
Confidence 67999999999999999999999999999999999999999999999999999998731
Q ss_pred CcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhhhhccC
Q psy1917 135 TRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQKSA 212 (212)
Q Consensus 135 ~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~~i~ 212 (212)
.+|+ +.+..+.+|++||+.+++.+.++.++|+|.++|.++.|++++|.+++
T Consensus 72 --------------------~~g~-------~~~~~~~~G~~fGe~~l~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~ 122 (333)
T 4ava_A 72 --------------------DDGV-------AIIARALPGMIVGEIALLRDSPRSATVTTIEPLTGWTGGRGAFATMV 122 (333)
T ss_dssp --------------------TTCC-------EEEEEECTTCEESHHHHHHTCBCSSEEEESSCEEEEEECHHHHHHHH
T ss_pred --------------------CCCc-------EEEEEecCCCEeeHHHhcCCCCceEEEEEecCEEEEEEcHHHHHHHH
Confidence 2222 25889999999999999999999999999999999999999998763
No 27
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.78 E-value=8.9e-19 Score=138.37 Aligned_cols=105 Identities=16% Similarity=0.366 Sum_probs=96.8
Q ss_pred HhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCC
Q psy1917 56 AIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCT 135 (212)
Q Consensus 56 ~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~ 135 (212)
.+.++|+|.+++++.+..++..++.+.|++|++|+++||.++.+|||.+|.|+++.+
T Consensus 76 ~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~----------------------- 132 (212)
T 3ukn_A 76 ELLQLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKD----------------------- 132 (212)
T ss_dssp GGGGSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESS-----------------------
T ss_pred HHHhcHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEEC-----------------------
Confidence 355899999999999999999999999999999999999999999999999999753
Q ss_pred cceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCC--CceeEEEEeccEEEEEEchhhhhccC
Q psy1917 136 RTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNC--TRTASIRALTPCKVWMLDRRVFQKSA 212 (212)
Q Consensus 136 r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~--~r~~sv~a~~~~~~~~l~~~~f~~i~ 212 (212)
+..+..+++|++||+.+++.+. +++++|+|.++|.++.|++++|.+++
T Consensus 133 -----------------------------~~~~~~l~~G~~fGe~~~~~~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll 182 (212)
T 3ukn_A 133 -----------------------------NTVLAILGKGDLIGSDSLTKEQVIKTNANVKALTYCDLQYISLKGLREVL 182 (212)
T ss_dssp -----------------------------SCEEEEECTTCEEECSCCSSSSCCBBCSEEEESSCEEEEEEEHHHHHHHH
T ss_pred -----------------------------CeEEEEecCCCCcCcHHhccCCCCCcceEEEEcccEEEEEEeHHHHHHHH
Confidence 3458889999999999999888 99999999999999999999998763
No 28
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.78 E-value=2.1e-18 Score=137.97 Aligned_cols=115 Identities=12% Similarity=0.200 Sum_probs=102.9
Q ss_pred HHHHHHhhcCccCCCCCHHHHHHHHhh--ceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhh
Q psy1917 51 QLIKAAIMDNDFLKNLDTLQVKEMVES--MHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGEL 128 (212)
Q Consensus 51 ~~~~~~l~~~~lf~~l~~~~~~~l~~~--~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~ 128 (212)
..+...++++++|..++++++..++.. +..+.|++|++|+++||+++.+|+|.+|.|+++..
T Consensus 14 ~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~---------------- 77 (232)
T 1zyb_A 14 ETMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTN---------------- 77 (232)
T ss_dssp HHHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEE----------------
T ss_pred HHHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEE----------------
Confidence 445678999999999999999999998 99999999999999999999999999999999862
Q ss_pred hhhhCCCcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCC-ceeEEEEeccEEEEEEchhh
Q psy1917 129 AILYNCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCT-RTASIRALTPCKVWMLDRRV 207 (212)
Q Consensus 129 ~ll~~~~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~-r~~sv~a~~~~~~~~l~~~~ 207 (212)
..+|+. ..+..+++|++||+.+++.+.+ +.++++|.++|+++.|++++
T Consensus 78 -------------------------~~~G~~------~~l~~~~~G~~fG~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~ 126 (232)
T 1zyb_A 78 -------------------------AKENIY------TVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAF 126 (232)
T ss_dssp -------------------------CGGGSC------EEEEEEESSEEECGGGGSSSCCBCSSEEEESSCEEEEEEEHHH
T ss_pred -------------------------CCCCCE------EEEEEccCCCeeeehHHhCCCCCCceEEEEccceEEEEEEHHH
Confidence 233433 2488999999999999998887 99999999999999999999
Q ss_pred hhccC
Q psy1917 208 FQKSA 212 (212)
Q Consensus 208 f~~i~ 212 (212)
|.+++
T Consensus 127 ~~~l~ 131 (232)
T 1zyb_A 127 VLSDL 131 (232)
T ss_dssp HHHTG
T ss_pred HHHHh
Confidence 98764
No 29
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.77 E-value=2.8e-19 Score=148.07 Aligned_cols=145 Identities=18% Similarity=0.288 Sum_probs=117.0
Q ss_pred CCCCCCcccccccCCCCC-cEEeeccCCCCCCCcceeecccC--CHHHHHHHHHHhhcCccCCCCCHHHHHHHHhhceEE
Q psy1917 5 DPLSSLGKVGQLLNSKKQ-GVSGESSTNGQTANDIQIQRYDK--DFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQA 81 (212)
Q Consensus 5 ~~g~~fge~~l~~~~~r~-~v~~e~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~ 81 (212)
.||+.|||++++.+.+|. ++.|......+......+..... .......+..++++.++|..++++++..++..+..+
T Consensus 104 ~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~ 183 (299)
T 3shr_A 104 GPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKSVPTFQSLPEEILSKLADVLEET 183 (299)
T ss_dssp CTTCEESCSGGGTTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHSCHHHHHHHTTTCEEE
T ss_pred CCCCeeeHhHHhcCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHHhhCHHhhhCCHHHHHHHHHhccEE
Confidence 589999999999999887 45554433333322221111111 123345667889999999999999999999999999
Q ss_pred EecCCCeEEccCCCCCeeEEEecCEEEEEECC------EEEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 82 EYKADSYVITEGEAGNDLFVSAEGEFQVIKDG------KILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 82 ~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~------~~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
.|++|++|+++||.++.+|+|.+|.|+++... ..+..+++|++|||++++.+.+|+++++|.+++..+
T Consensus 184 ~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~ 257 (299)
T 3shr_A 184 HYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFGEKALQGEDVRTANVIAAEAVTCL 257 (299)
T ss_dssp EECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEECGGGGSSSEECSSEEEESSSEEEE
T ss_pred EECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCEeChHHHhCCCCcceEEEECCCEEEE
Confidence 99999999999999999999999999999854 378999999999999999999999999998777554
No 30
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.77 E-value=3.1e-18 Score=135.24 Aligned_cols=110 Identities=14% Similarity=0.158 Sum_probs=98.7
Q ss_pred HHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCC
Q psy1917 55 AAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNC 134 (212)
Q Consensus 55 ~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~ 134 (212)
++++++|+|..|+++++..++..++.+.|++|++|+++|++++++|+|.+|.|+++..
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~---------------------- 60 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYIL---------------------- 60 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEE----------------------
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEE----------------------
Confidence 5789999999999999999999999999999999999999999999999999999872
Q ss_pred CcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCe--eeHhhhhcCCCceeEEEEeccEEEEEEchhhhhcc
Q psy1917 135 TRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKA--FGELAILYNCTRTASIRALTPCKVWMLDRRVFQKS 211 (212)
Q Consensus 135 ~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~--fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~~i 211 (212)
..+|+.. .+..++||++ ||+.+++.+.++.++++|.++|.++.+++++|.++
T Consensus 61 -------------------~~~G~~~------~~~~~~~G~~~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l 114 (220)
T 3dv8_A 61 -------------------SDEGREI------TLYRLFDMDMCLLSASCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGI 114 (220)
T ss_dssp -------------------CTTSCEE------EEEEECTTCEESGGGGGGCTTCCCCCEEEESSCEEEEEEEHHHHHHH
T ss_pred -------------------CCCCCEE------EEEecCCCCeeehhHHHHhCCCCCceEEEEeeeeEEEEEEHHHHHHH
Confidence 2334333 4889999999 79999999999999999999999999999999875
No 31
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.77 E-value=3.6e-18 Score=135.80 Aligned_cols=112 Identities=18% Similarity=0.375 Sum_probs=89.4
Q ss_pred HHHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhh
Q psy1917 53 IKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILY 132 (212)
Q Consensus 53 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~ 132 (212)
+...+++.++|..|+++++..++..++.+.|++|++|+++||+++.+|+|++|.++++..
T Consensus 9 ~~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~-------------------- 68 (230)
T 3iwz_A 9 VTTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAE-------------------- 68 (230)
T ss_dssp -------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEE--------------------
T ss_pred ehhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEE--------------------
Confidence 456799999999999999999999999999999999999999999999999999999872
Q ss_pred CCCcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCC-CceeEEEEeccEEEEEEchhhhhcc
Q psy1917 133 NCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNC-TRTASIRALTPCKVWMLDRRVFQKS 211 (212)
Q Consensus 133 ~~~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~-~r~~sv~a~~~~~~~~l~~~~f~~i 211 (212)
..+|+.. .+..+++|++||+.+++.+. ++.++++|.++|.++.|++++|.++
T Consensus 69 ---------------------~~~G~~~------~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l 121 (230)
T 3iwz_A 69 ---------------------EDDDREL------VLGYFGSGEFVGEMGLFIESDTREVILRTRTQCELAEISYERLQQL 121 (230)
T ss_dssp ---------------------CTTSCEE------EEEEECTTCEESCGGGTSCCSBCCSEEEESSCEEEEEEEHHHHHHH
T ss_pred ---------------------CCCCCEE------EEEEecCCCEEEehhhhcCCCCceeEEEEcCcEEEEEEeHHHHHHH
Confidence 2334333 48899999999999999875 7999999999999999999999875
No 32
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.76 E-value=4.9e-19 Score=130.00 Aligned_cols=108 Identities=18% Similarity=0.367 Sum_probs=94.2
Q ss_pred HHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCC
Q psy1917 55 AAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNC 134 (212)
Q Consensus 55 ~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~ 134 (212)
++|+++++|..++++++..++..++.+.|++|++|+++||.++.+|+|++|.|+++..
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~---------------------- 63 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTT---------------------- 63 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECC----------------------
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEc----------------------
Confidence 4688999999999999999999999999999999999999999999999999996532
Q ss_pred CcceEEEEEeeeeeeeeEEeecceEEEEECCe--E--EEEeCCCCeeeHhhh---hcCCC------ceeEEEEeccEEEE
Q psy1917 135 TRTASIRGFLTVLHFNFSVSAEGEFQVIKDGK--I--LAVMGPGKAFGELAI---LYNCT------RTASIRALTPCKVW 201 (212)
Q Consensus 135 ~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~--~--~~~l~~G~~fGe~~l---l~~~~------r~~sv~a~~~~~~~ 201 (212)
.+|+ . +..+.+|++||+.++ +.+.+ +.++++|.++|+++
T Consensus 64 ----------------------------~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 115 (137)
T 1wgp_A 64 ----------------------------DGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAF 115 (137)
T ss_dssp ----------------------------SSCSSSSSCEEECCTTCBSSTHHHHHHHCSSCCSSSCBCSSEEEESSCBEEE
T ss_pred ----------------------------CCCcceeeeeeeecCCCEecHHHHHHHhccccccccccceeEEEEeEEEEEE
Confidence 1222 2 448999999999985 77664 57999999999999
Q ss_pred EEchhhhhccC
Q psy1917 202 MLDRRVFQKSA 212 (212)
Q Consensus 202 ~l~~~~f~~i~ 212 (212)
.|++++|.+++
T Consensus 116 ~i~~~~~~~l~ 126 (137)
T 1wgp_A 116 ALIADELKFVA 126 (137)
T ss_dssp EEEHHHHHHHH
T ss_pred EECHHHHHHHH
Confidence 99999998763
No 33
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.76 E-value=3.2e-18 Score=140.95 Aligned_cols=145 Identities=17% Similarity=0.341 Sum_probs=113.7
Q ss_pred CCCCCCcccccccCCCCC-cEEeeccCCCCCCCcceeeccc-CC-HHHHHHHHHHhhcCccCCCCCHHHHHHHHhhceEE
Q psy1917 5 DPLSSLGKVGQLLNSKKQ-GVSGESSTNGQTANDIQIQRYD-KD-FRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQA 81 (212)
Q Consensus 5 ~~g~~fge~~l~~~~~r~-~v~~e~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~ 81 (212)
.||+.|||++++.+.+|. ++.|......+......+.... .. ......+..++.++++|..++.+.+..++..+..+
T Consensus 104 ~~G~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~ 183 (291)
T 2qcs_B 104 GEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILESLDKWERLTVADALEPV 183 (291)
T ss_dssp CTTCEECGGGGTCCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTCCHHHHHHHHHHCEEE
T ss_pred CCCCccchHHHhcCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHhhchHhhhCCHHHHHHHHhhcEEE
Confidence 589999999999998876 4444443222221111111111 11 12234556788999999999999999999999999
Q ss_pred EecCCCeEEccCCCCCeeEEEecCEEEEEEC---C---EEEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 82 EYKADSYVITEGEAGNDLFVSAEGEFQVIKD---G---KILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 82 ~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~---~---~~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
.|++|++|+++|++++.+|+|.+|.|++++. + ..+..+++|++|||++++.+.+|.+|++|.+++..+
T Consensus 184 ~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~ 257 (291)
T 2qcs_B 184 QFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPKAATVVARGPLKCV 257 (291)
T ss_dssp EECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEECSGGGTCCCCCSSEEEEEEEEEEE
T ss_pred EECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEecHHHHcCCCCcceEEEECCcEEEE
Confidence 9999999999999999999999999999862 2 378999999999999999999999999998887654
No 34
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.76 E-value=9.2e-19 Score=152.25 Aligned_cols=145 Identities=22% Similarity=0.328 Sum_probs=112.3
Q ss_pred CCCCCCcccccccCCCCC-cEEeeccCCCCCCCcceeecccCCHH--HHHHHHHHhhcCccCCCCCHHHHHHHHhhceEE
Q psy1917 5 DPLSSLGKVGQLLNSKKQ-GVSGESSTNGQTANDIQIQRYDKDFR--SKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQA 81 (212)
Q Consensus 5 ~~g~~fge~~l~~~~~r~-~v~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~ 81 (212)
.||+.|||++++++.+|. ++.|......+......+........ ....+..++.++++|..|+++++..++..+..+
T Consensus 214 ~~G~~fGe~all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~ 293 (416)
T 3tnp_B 214 DNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESLPFLKSLEVSERLKVVDVIGTK 293 (416)
T ss_dssp ESCCEECGGGGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSSSSSSSGGGCGGGTTCCHHHHHHHHHHCEEE
T ss_pred cCCCEEeeHHHhcCCCcccEEEEccCeEEEEEeehhhhhhhhcchhHHHHHHHHHHhhchHhhcCCHHHHHHHHhhceEE
Confidence 489999999999999987 45554433222222111111111111 111234568889999999999999999999999
Q ss_pred EecCCCeEEccCCCCCeeEEEecCEEEEEECC---------E--EEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 82 EYKADSYVITEGEAGNDLFVSAEGEFQVIKDG---------K--ILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 82 ~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~---------~--~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
.|++|++|+++|+.++.+|||.+|.|++++.. + .+..+++|++|||++++.+.+|+++|+|.+++..+
T Consensus 294 ~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~G~~fGE~all~~~~r~~tv~A~~~~~ll 372 (416)
T 3tnp_B 294 VYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFGELALVTNKPRAASAHAIGTVKCL 372 (416)
T ss_dssp EECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECTTCEESGGGGTCCSCCSSEEEEEEEEEEE
T ss_pred EECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCCCCEecHHHHhCCCCceeEEEEcCCeEEE
Confidence 99999999999999999999999999998642 2 68899999999999999999999999998887654
No 35
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.76 E-value=6.5e-19 Score=151.47 Aligned_cols=145 Identities=17% Similarity=0.338 Sum_probs=116.3
Q ss_pred CCCCCCcccccccCCCCC-cEEeeccCCCCCCCcceeecccC--CHHHHHHHHHHhhcCccCCCCCHHHHHHHHhhceEE
Q psy1917 5 DPLSSLGKVGQLLNSKKQ-GVSGESSTNGQTANDIQIQRYDK--DFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQA 81 (212)
Q Consensus 5 ~~g~~fge~~l~~~~~r~-~v~~e~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~ 81 (212)
.||+.|||++++++.+|. ++.|......+......+..... .......+..++.++++|..+++.++..++..+..+
T Consensus 195 ~~G~~fGe~all~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~ 274 (381)
T 4din_B 195 SEGGSFGELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILESLEKWERLTVADALEPV 274 (381)
T ss_dssp ESSCCBCGGGGTSCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTTCCTTHHHHHHTTCBCC
T ss_pred CCCCEEEchHHhcCCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhhhhHHHHhccHHHHHHHHHhhhhc
Confidence 489999999999998887 45555444333322222222111 122334566789999999999999999999999999
Q ss_pred EecCCCeEEccCCCCCeeEEEecCEEEEEECC------EEEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 82 EYKADSYVITEGEAGNDLFVSAEGEFQVIKDG------KILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 82 ~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~------~~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
.|++|++|+++|+.++.+|||.+|.|++++.. ..+..+++|++|||++++.+.||+++++|.+++..+
T Consensus 275 ~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~fGe~all~~~~r~~tv~A~~~~~ll 348 (381)
T 4din_B 275 QFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIALLLNRPRAATVVARGPLKCV 348 (381)
T ss_dssp CBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCEECTTGGGSCCBCSSEEEESSCBEEE
T ss_pred cCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCEechHHHhCCCCceeEEEEcCCEEEE
Confidence 99999999999999999999999999999742 268999999999999999999999999998777543
No 36
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.74 E-value=9.1e-19 Score=138.99 Aligned_cols=112 Identities=18% Similarity=0.395 Sum_probs=100.7
Q ss_pred HHHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhh
Q psy1917 53 IKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILY 132 (212)
Q Consensus 53 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~ 132 (212)
+.++|+++|+|..++++++..++..++.+.|++|++|+++|++++++|+|.+|.|+++...
T Consensus 7 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~------------------- 67 (227)
T 3dkw_A 7 HQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLT------------------- 67 (227)
T ss_dssp SHHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCC-------------------
T ss_pred HHHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEEC-------------------
Confidence 3578999999999999999999999999999999999999999999999999999997632
Q ss_pred CCCcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCC-ceeEEEEeccEEEEEEchhhhhcc
Q psy1917 133 NCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCT-RTASIRALTPCKVWMLDRRVFQKS 211 (212)
Q Consensus 133 ~~~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~-r~~sv~a~~~~~~~~l~~~~f~~i 211 (212)
.+|+. ..+..+++|++||+.+++.+.+ +.++++|.++|.++.+++++|.++
T Consensus 68 ----------------------~~G~~------~~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l 119 (227)
T 3dkw_A 68 ----------------------PEGQE------KILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQ 119 (227)
T ss_dssp ----------------------GGGCC------BCCCEECTTEEESCTTTTTTCSBCSSCEEESSCCEEEEEESHHHHHH
T ss_pred ----------------------CCCCE------EEEEEcCCCCEeeeHHhcCCCCCCceEEEEcCcEEEEEEeHHHHHHH
Confidence 22322 2478899999999999999998 999999999999999999999875
No 37
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.74 E-value=5.4e-18 Score=161.52 Aligned_cols=105 Identities=21% Similarity=0.357 Sum_probs=93.7
Q ss_pred cCCHHHHHHHHHHhhcCccCCCCCHHHHHHHHhhceEEE-ecCCCeEEccCCCCCeeEEEecCEEEEEECCE-EEEEeCC
Q psy1917 44 DKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAE-YKADSYVITEGEAGNDLFVSAEGEFQVIKDGK-ILAVMGP 121 (212)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~-~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~-~~~~l~~ 121 (212)
.++.++.+.+.+.+.++++|..|+...+..|+..+.... +++|++|++|||.++.+|||++|.|.|+++++ .+..|++
T Consensus 326 ~rt~ed~e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~~v~~L~~ 405 (999)
T 4f7z_A 326 QRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHE 405 (999)
T ss_dssp GCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTEEEEEEET
T ss_pred cccHHHHHHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCcceEEecC
Confidence 355667778889999999999999999999999998655 57899999999999999999999999998654 7999999
Q ss_pred CCcchhhhhhhCCCcceEEEEEee-eee
Q psy1917 122 GKAFGELAILYNCTRTASIRGFLT-VLH 148 (212)
Q Consensus 122 g~~fGe~~ll~~~~r~a~v~a~~~-~~~ 148 (212)
||+|||+|++++.||+|||+|..+ |..
T Consensus 406 Gd~FGElALL~~~PR~aTV~a~~d~c~f 433 (999)
T 4f7z_A 406 GDDFGKLALVNDAPRAASIVLREDNCHF 433 (999)
T ss_dssp TCEECGGGGTCSCBCSSEEEESSSSEEE
T ss_pred CCcccchhhccCCCeeEEEEEecCceEE
Confidence 999999999999999999999764 543
No 38
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.73 E-value=8.8e-18 Score=133.95 Aligned_cols=107 Identities=21% Similarity=0.316 Sum_probs=95.0
Q ss_pred hcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCcc
Q psy1917 58 MDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRT 137 (212)
Q Consensus 58 ~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r~ 137 (212)
..+|+|..++++++..++..++.+.|++|++|+++|++++.+|+|.+|.++++...
T Consensus 13 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~------------------------ 68 (232)
T 2gau_A 13 LLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREG------------------------ 68 (232)
T ss_dssp GSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC--------------------------
T ss_pred cccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEEC------------------------
Confidence 35789999999999999999999999999999999999999999999999998631
Q ss_pred eEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhhhhcc
Q psy1917 138 ASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQKS 211 (212)
Q Consensus 138 a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~~i 211 (212)
.+|+ ...+..+++|++||+.+++.+.++.++++|.++|+++.|++++|.++
T Consensus 69 -----------------~~g~------~~~~~~~~~G~~~G~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l 119 (232)
T 2gau_A 69 -----------------VYGR------FHISRIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIPVEAIEAL 119 (232)
T ss_dssp --------------------C------CCEEEEECTTCEESHHHHHHTSCCSSEEEESSCEEEEEEEHHHHHHH
T ss_pred -----------------CCCC------EEEEEEeCCCCEeeeehhhCCCCcceEEEEecceEEEEEEHHHHHHH
Confidence 1222 23589999999999999999999999999999999999999999875
No 39
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.70 E-value=7.3e-17 Score=126.47 Aligned_cols=104 Identities=25% Similarity=0.391 Sum_probs=89.8
Q ss_pred ccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCcceEE
Q psy1917 61 DFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASI 140 (212)
Q Consensus 61 ~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r~a~v 140 (212)
+++..++++++..++..++.+.|++|++|+++|++++++|+|.+|.++++..
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~---------------------------- 53 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIK---------------------------- 53 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEE----------------------------
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEE----------------------------
Confidence 4677899999999999999999999999999999999999999999999872
Q ss_pred EEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCC-CceeEEEEeccEEEEEEchhhhhcc
Q psy1917 141 RGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNC-TRTASIRALTPCKVWMLDRRVFQKS 211 (212)
Q Consensus 141 ~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~-~r~~sv~a~~~~~~~~l~~~~f~~i 211 (212)
..+|+.. .+..+++|++||+.+++.+. ++.++++|.++|.++.+++++|.++
T Consensus 54 -------------~~~g~~~------~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l 106 (210)
T 3ryp_A 54 -------------DEEGKEM------ILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQL 106 (210)
T ss_dssp -------------CTTCCEE------EEEEEETTCEESCTTTTSTTCBCSSEEEESSCEEEEEEEHHHHHHH
T ss_pred -------------CCCCCEE------EEEEcCCCCEeeeHHHhcCCCCceEEEEECCcEEEEEEcHHHHHHH
Confidence 2334333 48899999999999999887 8999999999999999999999875
No 40
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.70 E-value=2.4e-16 Score=144.92 Aligned_cols=124 Identities=19% Similarity=0.381 Sum_probs=112.8
Q ss_pred ceeecccCCHHHHHHHHHHhhcCccCCCCCHHHHHHHHhhce-EEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEE
Q psy1917 38 IQIQRYDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMH-QAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKIL 116 (212)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~-~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~ 116 (212)
...+...++.++.+.+.+.++++++|.+++++++..++..+. .+.|++|++|+++||.++.+|+|++|.|+++..+
T Consensus 15 L~k~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~g--- 91 (694)
T 3cf6_E 15 LRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYG--- 91 (694)
T ss_dssp HHSCGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEETT---
T ss_pred HcCChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEeC---
Confidence 345667888888998999999999999999999999999998 7899999999999999999999999999998743
Q ss_pred EEeCCCCcchhhhhhhCCCcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEec
Q psy1917 117 AVMGPGKAFGELAILYNCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALT 196 (212)
Q Consensus 117 ~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~ 196 (212)
...+..+.+|++||+.+++.+.++.++++|.+
T Consensus 92 ------------------------------------------------~~il~~l~~Gd~fGe~al~~~~~~~~tv~A~e 123 (694)
T 3cf6_E 92 ------------------------------------------------KGVVCTLHEGDDFGKLALVNDAPRAASIVLRE 123 (694)
T ss_dssp ------------------------------------------------TEEEEEEETTCEECHHHHHHTCBCSSEEEECS
T ss_pred ------------------------------------------------CEEEEEeCCCCEeehHHHhCCCCceEEEEEee
Confidence 13588999999999999999999999999999
Q ss_pred -cEEEEEEchhhhhccC
Q psy1917 197 -PCKVWMLDRRVFQKSA 212 (212)
Q Consensus 197 -~~~~~~l~~~~f~~i~ 212 (212)
+|+++.|++++|.+++
T Consensus 124 dd~~ll~I~~~~f~~ll 140 (694)
T 3cf6_E 124 DNCHFLRVDKEDFNRIL 140 (694)
T ss_dssp SSEEEEEEEHHHHHHHT
T ss_pred CceEEEEEeHHHHHHHH
Confidence 5999999999998864
No 41
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.69 E-value=1.8e-16 Score=123.92 Aligned_cols=99 Identities=23% Similarity=0.451 Sum_probs=87.2
Q ss_pred CCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCcceEEEEEee
Q psy1917 66 LDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLT 145 (212)
Q Consensus 66 l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~ 145 (212)
|+++++..++..+..+.|++|++|+++|++++.+|+|.+|.++++..
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~--------------------------------- 47 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIE--------------------------------- 47 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEE---------------------------------
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEE---------------------------------
Confidence 68899999999999999999999999999999999999999999862
Q ss_pred eeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCC----CceeEEEEeccEEEEEEchhhhhcc
Q psy1917 146 VLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNC----TRTASIRALTPCKVWMLDRRVFQKS 211 (212)
Q Consensus 146 ~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~----~r~~sv~a~~~~~~~~l~~~~f~~i 211 (212)
..+|+.. .+..+++|++||+.+++.+. ++.++++|.++|.++.|++++|.++
T Consensus 48 --------~~~G~~~------~~~~~~~g~~~G~~~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l 103 (207)
T 2oz6_A 48 --------DDDGREM------IIGYLNSGDFFGELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFREL 103 (207)
T ss_dssp --------CTTSCEE------EEEEEETTCEESCTTTCC-----CBCCSEEEESSCEEEEEEEHHHHHHH
T ss_pred --------CCCCCEE------EEEEcCCCCCcccHHHhcCCCCCCCcceEEEECCcEEEEEECHHHHHHH
Confidence 2334333 48899999999999999887 8999999999999999999999875
No 42
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.67 E-value=2.5e-16 Score=128.21 Aligned_cols=108 Identities=25% Similarity=0.373 Sum_probs=87.9
Q ss_pred hhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCc
Q psy1917 57 IMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTR 136 (212)
Q Consensus 57 l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r 136 (212)
+....+...++++++..++..++.+.|++|++|+++|++++.+|+|++|.|+++..
T Consensus 48 i~~~~~~~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~------------------------ 103 (260)
T 3kcc_A 48 IGSMVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIK------------------------ 103 (260)
T ss_dssp -----------CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEE------------------------
T ss_pred HHHHHHcCCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEE------------------------
Confidence 33333446699999999999999999999999999999999999999999999872
Q ss_pred ceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCC-CceeEEEEeccEEEEEEchhhhhcc
Q psy1917 137 TASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNC-TRTASIRALTPCKVWMLDRRVFQKS 211 (212)
Q Consensus 137 ~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~-~r~~sv~a~~~~~~~~l~~~~f~~i 211 (212)
..+|+.. .+..+++|++||+.+++.+. ++.++++|.++|.++.|++++|.++
T Consensus 104 -----------------~~~G~e~------~~~~~~~G~~~Ge~~~~~~~~~~~~~~~A~~~~~l~~i~~~~~~~l 156 (260)
T 3kcc_A 104 -----------------DEEGKEM------ILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQL 156 (260)
T ss_dssp -----------------CTTCCEE------EEEEEETTCEESCTTTTSTTCBCCSEEEESSCEEEEEEEHHHHHHH
T ss_pred -----------------CCCCCEE------EEEEcCCCCEEeehHHhCCCCCCceEEEECCCeEEEEEcHHHHHHH
Confidence 2333333 48899999999999999888 8999999999999999999999875
No 43
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.66 E-value=2.3e-16 Score=124.52 Aligned_cols=106 Identities=12% Similarity=0.179 Sum_probs=86.3
Q ss_pred cCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCcce
Q psy1917 59 DNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTA 138 (212)
Q Consensus 59 ~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r~a 138 (212)
.-|.|..+++..+..+...+..+.|++|++|+++|++++.+|+|.+|.|+++..
T Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~-------------------------- 56 (213)
T 1o5l_A 3 SDKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHV-------------------------- 56 (213)
T ss_dssp ----------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEE--------------------------
T ss_pred ccccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEE--------------------------
Confidence 457888999999999999999999999999999999999999999999999872
Q ss_pred EEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCC-CceeEEEEeccEEEEEEchhhhhcc
Q psy1917 139 SIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNC-TRTASIRALTPCKVWMLDRRVFQKS 211 (212)
Q Consensus 139 ~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~-~r~~sv~a~~~~~~~~l~~~~f~~i 211 (212)
..+|+.. .+..+++|++||+.+++.+. ++.++++|.++|.++.|++++|.++
T Consensus 57 ---------------~~~G~~~------~~~~~~~G~~~G~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l 109 (213)
T 1o5l_A 57 ---------------SENGKTL------EIDEIKPVQIIASGFIFSSEPRFPVNVVAGENSKILSIPKEVFLDL 109 (213)
T ss_dssp ---------------CTTSCEE------EEEEECSSEESSGGGTTSSSCBCSSEEEESSSEEEEEEEHHHHHHH
T ss_pred ---------------CCCCCEE------EEEEecCCCEeeeHHHhcCCCCceEEEEEccceEEEEEeHHHHHHH
Confidence 2334333 48899999999999988876 8999999999999999999999875
No 44
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.65 E-value=1.7e-16 Score=125.56 Aligned_cols=102 Identities=21% Similarity=0.324 Sum_probs=91.3
Q ss_pred HHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCC
Q psy1917 55 AAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNC 134 (212)
Q Consensus 55 ~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~ 134 (212)
.+|+++|+|..++++++..++..+..+.|++|++|+++||+++.+|+|.+|.++++.
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~----------------------- 60 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYL----------------------- 60 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEE-----------------------
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEE-----------------------
Confidence 457899999999999999999999999999999999999999999999999999953
Q ss_pred CcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhhhhcc
Q psy1917 135 TRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQKS 211 (212)
Q Consensus 135 ~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~~i 211 (212)
..+|+.. .+..+++|++||+ ++.++++|.++|+++.|++++|.++
T Consensus 61 -------------------~~~G~~~------~~~~~~~G~~~G~-------~~~~~~~A~~~~~v~~i~~~~~~~l 105 (220)
T 2fmy_A 61 -------------------AYEDKEF------TLAILEAGDIFCT-------HTRAFIQAMEDTTILYTDIRNFQNI 105 (220)
T ss_dssp -------------------ECSSCEE------EEEEEETTCEEES-------CSSSEEEESSSEEEEEEEHHHHHHH
T ss_pred -------------------CCCCCEE------EEEEcCCCCEeCC-------ccceEEEEcCcEEEEEEeHHHHHHH
Confidence 2233332 4889999999998 8899999999999999999999875
No 45
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.63 E-value=3e-16 Score=124.39 Aligned_cols=101 Identities=18% Similarity=0.166 Sum_probs=90.1
Q ss_pred HhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCC
Q psy1917 56 AIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCT 135 (212)
Q Consensus 56 ~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~ 135 (212)
+|+++|+|..++++++..++..+..+.|++|++|+++|++++.+|+|.+|.|+++.
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~------------------------ 56 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYL------------------------ 56 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEE------------------------
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEE------------------------
Confidence 36789999999999999999999999999999999999999999999999999953
Q ss_pred cceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhhhhcc
Q psy1917 136 RTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQKS 211 (212)
Q Consensus 136 r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~~i 211 (212)
..+|+.. .+..+++|++|| .++.++++|.++|+++.|++++|.++
T Consensus 57 ------------------~~~G~~~------~~~~~~~G~~fG-------~~~~~~~~A~~~~~v~~i~~~~~~~l 101 (222)
T 1ft9_A 57 ------------------VGEEREI------SLFYLTSGDMFC-------MHSGCLVEATERTEVRFADIRTFEQK 101 (222)
T ss_dssp ------------------EETTEEE------EEEEEETTCEEE-------SCSSCEEEESSCEEEEEECHHHHHHH
T ss_pred ------------------CCCCCEE------EEEEcCCCCEec-------CCCCEEEEEccceEEEEEeHHHHHHH
Confidence 2334333 488999999999 68999999999999999999999875
No 46
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.62 E-value=4e-15 Score=130.38 Aligned_cols=108 Identities=20% Similarity=0.337 Sum_probs=98.8
Q ss_pred ecccCCHHHHHHHHHHhhcCccCCCCCHHHHHHHHhhceE-EEecCCCeEEccCCCCCeeEEEecCEEEEEECCE-EEEE
Q psy1917 41 QRYDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQ-AEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGK-ILAV 118 (212)
Q Consensus 41 ~~~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~-~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~-~~~~ 118 (212)
+...++.++.+.+.+.++++++|..|+++.+..++..+.. +.|++|++|+++||.++.+|||.+|.|+++..++ .+..
T Consensus 323 ~~~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~ 402 (469)
T 1o7f_A 323 PPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCT 402 (469)
T ss_dssp CTTSCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTTEEEEE
T ss_pred CchhcCHHHHHHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCCeeEEE
Confidence 3456788888889999999999999999999999999985 5999999999999999999999999999998765 8999
Q ss_pred eCCCCcchhhhhhhCCCcceEEEEEe-eeee
Q psy1917 119 MGPGKAFGELAILYNCTRTASIRGFL-TVLH 148 (212)
Q Consensus 119 l~~g~~fGe~~ll~~~~r~a~v~a~~-~~~~ 148 (212)
+++|++|||++++.+.||+++++|.+ ++..
T Consensus 403 l~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~ 433 (469)
T 1o7f_A 403 LHEGDDFGKLALVNDAPRAASIVLREDNCHF 433 (469)
T ss_dssp EETTCEECGGGGTCCSCCSSEEEESSSSEEE
T ss_pred ecCCCEEEEehhhcCCCceEEEEEecCCEEE
Confidence 99999999999999999999999986 4654
No 47
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.61 E-value=1.5e-15 Score=122.48 Aligned_cols=105 Identities=12% Similarity=0.126 Sum_probs=91.5
Q ss_pred hhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCc
Q psy1917 57 IMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTR 136 (212)
Q Consensus 57 l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r 136 (212)
+.....+..++++++..++..+..+.|++|++|+++|++++.+|+|.+|.|+++..
T Consensus 11 ~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~------------------------ 66 (250)
T 3e6c_C 11 CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDII------------------------ 66 (250)
T ss_dssp CCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEE------------------------
T ss_pred hhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEE------------------------
Confidence 34444458899999999999999999999999999999999999999999999872
Q ss_pred ceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhhhhcc
Q psy1917 137 TASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQKS 211 (212)
Q Consensus 137 ~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~~i 211 (212)
..+|+.. .+..+++|++||+ ++.+. +.++++|.++|.++.+++++|.++
T Consensus 67 -----------------~~~G~~~------~~~~~~~G~~~G~--~l~~~-~~~~~~A~~~~~v~~i~~~~~~~l 115 (250)
T 3e6c_C 67 -----------------FEDGSEK------LLYYAGGNSLIGK--LYPTG-NNIYATAMEPTRTCWFSEKSLRTV 115 (250)
T ss_dssp -----------------CTTSCEE------EEEEECTTCEECC--CSCCS-CCEEEEESSSEEEEEECHHHHHHH
T ss_pred -----------------CCCCCEE------EEEEecCCCEEee--ecCCC-CceEEEEcccEEEEEEcHHHHHHH
Confidence 2344433 4889999999999 67777 999999999999999999999875
No 48
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.55 E-value=2.9e-14 Score=114.68 Aligned_cols=97 Identities=14% Similarity=0.262 Sum_probs=84.8
Q ss_pred HHHHHHHHhhce---EEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCcceEEEEEe
Q psy1917 68 TLQVKEMVESMH---QAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFL 144 (212)
Q Consensus 68 ~~~~~~l~~~~~---~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~ 144 (212)
++.++.++.... .+.|++|++|+++|++++.+|+|++|.|+++..
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~-------------------------------- 77 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRV-------------------------------- 77 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEE--------------------------------
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEE--------------------------------
Confidence 778888888888 999999999999999999999999999999872
Q ss_pred eeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCC--ceeEEEEeccEEEEEEchhhhhcc
Q psy1917 145 TVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCT--RTASIRALTPCKVWMLDRRVFQKS 211 (212)
Q Consensus 145 ~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~--r~~sv~a~~~~~~~~l~~~~f~~i 211 (212)
..+|+.. .+..+++|++||+.+++.+.+ +.++++|.++|.++.|++++|.++
T Consensus 78 ---------~~~G~~~------~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l 131 (243)
T 3la7_A 78 ---------YEAGEEI------TVALLRENSVFGVLSLLTGNKSDRFYHAVAFTPVELLSAPIEQVEQA 131 (243)
T ss_dssp ---------CTTCCEE------EEEEECTTCEESCHHHHSSCCSBCCEEEEESSSEEEEEEEHHHHHHH
T ss_pred ---------CCCCCEE------EEEEecCCCEEcchHHhCCCCCcceEEEEEccceEEEEEcHHHHHHH
Confidence 2334433 488999999999999998876 568999999999999999999875
No 49
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.55 E-value=5.1e-16 Score=132.07 Aligned_cols=105 Identities=24% Similarity=0.386 Sum_probs=1.0
Q ss_pred HHHhhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhC
Q psy1917 54 KAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYN 133 (212)
Q Consensus 54 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~ 133 (212)
.+.++++++|+++++++++.++..++.+.|++|++|+++||+++.+|+|.+|.++++..+
T Consensus 227 ~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-------------------- 286 (355)
T 3beh_A 227 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN-------------------- 286 (355)
T ss_dssp HC------------------------------------------------------------------------------
T ss_pred chhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC--------------------
Confidence 457899999999999999999999999999999999999999999999999999997631
Q ss_pred CCcceEEEEEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhhhhccC
Q psy1917 134 CTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQKSA 212 (212)
Q Consensus 134 ~~r~a~v~a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~~i~ 212 (212)
...+++|++|||.+++.+.++.++++|.++|+++.+++++|.+++
T Consensus 287 ----------------------------------~~~l~~G~~fGe~~~l~~~~~~~~~~A~~~~~l~~i~~~~f~~ll 331 (355)
T 3beh_A 287 ----------------------------------PVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLC 331 (355)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred ----------------------------------eeEECCCCEEeehHHhCCCCcceEEEECccEEEEEEeHHHHHHHH
Confidence 246889999999999999999999999999999999999998764
No 50
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.54 E-value=2.6e-14 Score=114.46 Aligned_cols=100 Identities=9% Similarity=0.143 Sum_probs=84.0
Q ss_pred CCCCHHHHHHHHh--hceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCcceEEE
Q psy1917 64 KNLDTLQVKEMVE--SMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIR 141 (212)
Q Consensus 64 ~~l~~~~~~~l~~--~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r~a~v~ 141 (212)
++++++++..++. .+..+.|++|++|+++||+++.+|+|++|.|+++..
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~----------------------------- 52 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSI----------------------------- 52 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEE-----------------------------
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEE-----------------------------
Confidence 3688999999885 599999999999999999999999999999999872
Q ss_pred EEeeeeeeeeEEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCc--eeEEEEec-cEEEEEEchhhhhcc
Q psy1917 142 GFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTR--TASIRALT-PCKVWMLDRRVFQKS 211 (212)
Q Consensus 142 a~~~~~~~~~~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r--~~sv~a~~-~~~~~~l~~~~f~~i 211 (212)
..+|+.. .+..+ +|++||+.+++.+.++ ..++.|.+ +|.++.|++++|.++
T Consensus 53 ------------~~~G~e~------~~~~~-~G~~~Ge~~~~~~~~~~~~~~~~a~~~~~~v~~i~~~~~~~l 106 (238)
T 2bgc_A 53 ------------SENGTIM------NLQYY-KGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKEL 106 (238)
T ss_dssp ------------CTTSCEE------EEEEE-ESSEEEESBCTTTCCBSCCCEEEECSSEEEEEEEEHHHHHHH
T ss_pred ------------CCCCCEE------EEEEc-CCCEecchhhhcCCCcCcceeEEEEEcceEEEEEeHHHHHHH
Confidence 2344433 37788 9999999999988765 77888884 899999999999875
No 51
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.53 E-value=5.5e-14 Score=109.20 Aligned_cols=81 Identities=23% Similarity=0.334 Sum_probs=71.7
Q ss_pred EEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeeeeeEEeecceEE
Q psy1917 81 AEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHFNFSVSAEGEFQ 160 (212)
Q Consensus 81 ~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~~~~i~~~g~~~ 160 (212)
+.|++|++|+++|++++.+|+|++|.++++.. ..+|+..
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~-----------------------------------------~~~g~~~ 40 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVEL-----------------------------------------LPDGRLI 40 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEE-----------------------------------------CTTSCEE
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEE-----------------------------------------CCCCCEE
Confidence 68999999999999999999999999999872 2333332
Q ss_pred EEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhhhh
Q psy1917 161 VIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQ 209 (212)
Q Consensus 161 ~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~ 209 (212)
.+..+++|++||+ +++.+.++.++++|.++|.++.|++++|.
T Consensus 41 ------~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~~~~~ 82 (195)
T 3b02_A 41 ------TLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEPRAMD 82 (195)
T ss_dssp ------EEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECGGGCC
T ss_pred ------EEEEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcHHHcC
Confidence 4889999999999 99999999999999999999999999874
No 52
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.44 E-value=3e-13 Score=105.48 Aligned_cols=87 Identities=23% Similarity=0.311 Sum_probs=72.2
Q ss_pred HHhhceEEEecCCCeEEccCCCC--CeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeeeee
Q psy1917 74 MVESMHQAEYKADSYVITEGEAG--NDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHFNF 151 (212)
Q Consensus 74 l~~~~~~~~~~~g~~I~~~Gd~~--~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~~~ 151 (212)
|...+..+.|++|++|+++|+++ +++|+|++|.++++..
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~--------------------------------------- 41 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAV--------------------------------------- 41 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEE---------------------------------------
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEE---------------------------------------
Confidence 34677899999999999999999 9999999999999862
Q ss_pred EEeecceEEEEECCeEEEEeCCCCeeeHhhhhcCCCceeEEEEeccEEEEEEchhhhh
Q psy1917 152 SVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQ 209 (212)
Q Consensus 152 ~i~~~g~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~r~~sv~a~~~~~~~~l~~~~f~ 209 (212)
..+|+.. .+..++||++||+ +++.+.++.++++|+++|.++.+ +++|.
T Consensus 42 --~~~G~~~------~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~~v~~i-~~~~~ 89 (202)
T 2zcw_A 42 --DEEGNAL------TLRLVRPGGFFGE-EALFGQERIYFAEAATDVRLEPL-PENPD 89 (202)
T ss_dssp --CTTSCEE------EEEEECTTCEECT-HHHHTCCBCSEEEESSCEEEEEC-CSSCC
T ss_pred --CCCCcEE------EEEEecCCCEeee-hhcCCCCcceEEEEcccEEEEEE-hHhcC
Confidence 2344433 4889999999999 88889999999999999999999 87763
No 53
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=95.38 E-value=0.015 Score=41.22 Aligned_cols=32 Identities=63% Similarity=1.131 Sum_probs=28.5
Q ss_pred EeCCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 118 VMGPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 118 ~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
.+.+|++|||++++.+.++.++++|.+++..+
T Consensus 86 ~~~~G~~fGe~~~l~~~~~~~~~~a~~~~~v~ 117 (139)
T 3ocp_A 86 TMGPGKVFGELAILYNCTRTATVKTLVNVKLW 117 (139)
T ss_dssp EECTTCEESCHHHHHCCCCSSEEEESSCEEEE
T ss_pred EeCCCCEeccHHHHCCCCcceEEEECcceEEE
Confidence 46899999999999999999999998877654
No 54
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=95.09 E-value=0.017 Score=43.86 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=29.8
Q ss_pred EEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 116 LAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 116 ~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
+..+++|++|||.+++.+.++.++++|.+.+..+
T Consensus 133 ~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~ 166 (198)
T 2ptm_A 133 ATSLSDGSYFGEICLLTRERRVASVKCETYCTLF 166 (198)
T ss_dssp EEEECTTCEESCHHHHHSSCCSSEEEESSCEEEE
T ss_pred EEEecCCCEechHHHcCCCccceEEEEeeEEEEE
Confidence 4568899999999999999999999998877654
No 55
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=94.98 E-value=0.02 Score=41.79 Aligned_cols=35 Identities=29% Similarity=0.419 Sum_probs=30.4
Q ss_pred EEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 115 ILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 115 ~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
.+..+++|++|||++++.+.++.++++|.+++..+
T Consensus 102 ~~~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~~~~ 136 (161)
T 3idb_B 102 CVGNYDNRGSFGELALMYNTPRAATITATSPGALW 136 (161)
T ss_dssp EEEEEESCCEECGGGGTCCCCCSSEEEESSSEEEE
T ss_pred EEEEcCCCCEechHHHHcCCCcccEEEECCCeEEE
Confidence 35568899999999999999999999998887654
No 56
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=94.98 E-value=0.023 Score=41.16 Aligned_cols=32 Identities=34% Similarity=0.674 Sum_probs=28.5
Q ss_pred EeCCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 118 VMGPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 118 ~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
.+.+|++|||.+++.+.++.++++|.+++..+
T Consensus 101 ~~~~G~~fGe~~~~~~~~~~~~v~A~~~~~~~ 132 (154)
T 3pna_A 101 SVGEGGSFGELALIYGTPRAATVKAKTNVKLW 132 (154)
T ss_dssp EECTTCEECCHHHHHCCCCSSEEEESSCEEEE
T ss_pred EecCCCEeeehHhhcCCCcceEEEECcceEEE
Confidence 47899999999999999999999998887654
No 57
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=94.88 E-value=0.026 Score=39.88 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=30.4
Q ss_pred EEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 116 LAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 116 ~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
+..+++|++|||.+++.+.++.++++|.+++..+
T Consensus 75 ~~~~~~G~~fG~~~~~~~~~~~~~~~a~~~~~~~ 108 (142)
T 3mdp_A 75 VCSVVPGAIFGVSSLIKPYHYTSSARATKPVRVV 108 (142)
T ss_dssp EEEECTTCEECGGGSSTTCBCSSEEEESSCEEEE
T ss_pred EEEecCCCEechHHHcCCCCceEEEEECCcEEEE
Confidence 6778999999999999999999999998887654
No 58
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=94.46 E-value=0.046 Score=41.12 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=30.7
Q ss_pred EEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 115 ILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 115 ~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
.+..+++|++|||.+++.+.++.++++|.+++..+
T Consensus 104 ~~~~~~~G~~fGe~~~l~~~~~~~~v~A~~~~~v~ 138 (187)
T 3gyd_A 104 TIAKVGAGAIIGEMSMIDGMPRSASCVASLPTDFA 138 (187)
T ss_dssp EEEEEETTCEESHHHHHHCCCCSSEEEEEEEEEEE
T ss_pred EEEEccCCCeeeeHHHhCCCCeeEEEEECCCeEEE
Confidence 45578999999999999999999999999887654
No 59
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=94.26 E-value=0.023 Score=43.55 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=28.7
Q ss_pred EEeCCCCcchhhhhhhCC--CcceEEEEEeeeeee
Q psy1917 117 AVMGPGKAFGELAILYNC--TRTASIRGFLTVLHF 149 (212)
Q Consensus 117 ~~l~~g~~fGe~~ll~~~--~r~a~v~a~~~~~~~ 149 (212)
..+++|++|||.+++.+. +++++++|.+.+..+
T Consensus 137 ~~l~~G~~fGe~~~~~~~~~~~~~~v~a~~~~~l~ 171 (212)
T 3ukn_A 137 AILGKGDLIGSDSLTKEQVIKTNANVKALTYCDLQ 171 (212)
T ss_dssp EEECTTCEEECSCCSSSSCCBBCSEEEESSCEEEE
T ss_pred EEecCCCCcCcHHhccCCCCCcceEEEEcccEEEE
Confidence 357899999999999998 999999998887654
No 60
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=93.97 E-value=0.043 Score=45.05 Aligned_cols=34 Identities=29% Similarity=0.455 Sum_probs=30.3
Q ss_pred EEEEeCCCCcchhhhhhhCCCcceEEEEEeeeee
Q psy1917 115 ILAVMGPGKAFGELAILYNCTRTASIRGFLTVLH 148 (212)
Q Consensus 115 ~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~ 148 (212)
.+..+.+|++|||++++++.+++++++|.+++..
T Consensus 77 ~~~~~~~G~~fGe~~l~~~~~~~~~v~A~~~~~~ 110 (333)
T 4ava_A 77 IIARALPGMIVGEIALLRDSPRSATVTTIEPLTG 110 (333)
T ss_dssp EEEEECTTCEESHHHHHHTCBCSSEEEESSCEEE
T ss_pred EEEEecCCCEeeHHHhcCCCCceEEEEEecCEEE
Confidence 4567899999999999999999999999888764
No 61
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=93.92 E-value=0.029 Score=42.70 Aligned_cols=31 Identities=32% Similarity=0.473 Sum_probs=27.7
Q ss_pred eCCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 119 MGPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 119 l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
+++|++|||.+++.+.+++++++|.+.+..+
T Consensus 136 l~~G~~fGe~~~~~~~~~~~~v~a~~~~~l~ 166 (202)
T 3bpz_A 136 LSDGSYFGEICLLTRGRRTASVRADTYCRLY 166 (202)
T ss_dssp EETTCEECHHHHHHCSBCSSEEEESSCEEEE
T ss_pred EcCCCEeccHHHhcCCCcccEEEEeeEEEEE
Confidence 5789999999999999999999998877654
No 62
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=93.37 E-value=0.065 Score=37.96 Aligned_cols=35 Identities=34% Similarity=0.505 Sum_probs=30.2
Q ss_pred EEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 115 ILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 115 ~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
.+..+++|++||+.+++.+.++.++++|.+++..+
T Consensus 70 ~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~~~ 104 (149)
T 2pqq_A 70 MLAVVGPSELIGELSLFDPGPRTATGTALTEVKLL 104 (149)
T ss_dssp EEEEECTTCEESGGGGTSCEECSSEEEESSCEEEE
T ss_pred EEEEcCCcCEechHHhcCCCCcceEEEEccceEEE
Confidence 45678999999999999999999999998877654
No 63
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=92.91 E-value=0.1 Score=39.19 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=29.3
Q ss_pred EEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 115 ILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 115 ~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
.+..+++|++||| +++.+.++.++++|.+++..+
T Consensus 41 ~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~ 74 (195)
T 3b02_A 41 TLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQ 74 (195)
T ss_dssp EEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEE
T ss_pred EEEEecCCCEech-hhhCCCCceeEEEECCcEEEE
Confidence 4567899999999 999999999999998777543
No 64
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=92.65 E-value=0.082 Score=37.06 Aligned_cols=30 Identities=37% Similarity=0.617 Sum_probs=26.7
Q ss_pred CCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 120 GPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 120 ~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
.+|++||+.+++.+.++.++++|.+++..+
T Consensus 74 ~~G~~~G~~~~~~~~~~~~~~~a~~~~~~~ 103 (138)
T 1vp6_A 74 GPGAFFGEMALISGEPRSATVSAATTVSLL 103 (138)
T ss_dssp CTTCEECHHHHHHCCCCSSCEEESSSEEEE
T ss_pred CCCCEeeehHhccCCCceeEEEECCCEEEE
Confidence 689999999999999999999998877654
No 65
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=92.64 E-value=0.062 Score=38.69 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=27.6
Q ss_pred EeCCCCcchhhhhhhC--CCcceEEEEEeeeeee
Q psy1917 118 VMGPGKAFGELAILYN--CTRTASIRGFLTVLHF 149 (212)
Q Consensus 118 ~l~~g~~fGe~~ll~~--~~r~a~v~a~~~~~~~ 149 (212)
.+++|++|||.+++.+ .++.++++|.+++..+
T Consensus 90 ~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~~v~ 123 (160)
T 4f8a_A 90 ILGKGDVFGDVFWKEATLAQSCANVRALTYCDLH 123 (160)
T ss_dssp EEETTCEEECCTTTCSSCCBCSSEEEESSCEEEE
T ss_pred EecCCCEeCcHHHhcCcccceEEEEEECCceEEE
Confidence 4678999999999999 7999999998887654
No 66
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=92.46 E-value=0.092 Score=37.44 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=30.2
Q ss_pred EEEEeCCCCcchhhhhhhCCC-cceEEEEEeeeeee
Q psy1917 115 ILAVMGPGKAFGELAILYNCT-RTASIRGFLTVLHF 149 (212)
Q Consensus 115 ~~~~l~~g~~fGe~~ll~~~~-r~a~v~a~~~~~~~ 149 (212)
.+..+++|++||+.+++.+.+ +.++++|.+++..+
T Consensus 77 ~~~~~~~G~~~G~~~~~~~~~~~~~~~~a~~~~~~~ 112 (154)
T 2z69_A 77 ILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLF 112 (154)
T ss_dssp CCEEECTTEEESGGGGGSSCSBCSSEEEESSSEEEE
T ss_pred EEEEccCCCeeccHhhccCCCCCceEEEEccceEEE
Confidence 456788999999999999999 99999998877654
No 67
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=92.33 E-value=0.12 Score=39.62 Aligned_cols=35 Identities=37% Similarity=0.576 Sum_probs=30.4
Q ss_pred EEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 115 ILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 115 ~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
.+..+.+|++|||.+++.+.++.++++|.+++..+
T Consensus 71 ~~~~~~~G~~~G~~~~~~~~~~~~~~~A~~~~~v~ 105 (227)
T 3d0s_A 71 LLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAV 105 (227)
T ss_dssp EEEEECTTCEESCHHHHSCSCCSSEEEESSCEEEE
T ss_pred EEEEecCCCEEeeHHHcCCCCceeEEEEcccEEEE
Confidence 35678999999999999999999999998887653
No 68
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=92.26 E-value=0.14 Score=38.90 Aligned_cols=35 Identities=34% Similarity=0.555 Sum_probs=30.5
Q ss_pred EEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 115 ILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 115 ~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
.+..+++|++|||.+++.+.++.++++|.+++..+
T Consensus 64 ~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~v~ 98 (216)
T 4ev0_A 64 TLALLGPGELFGEMSLLDEGERSASAVAVEDTELL 98 (216)
T ss_dssp EEEEECTTCEECHHHHHHCCBCSSEEEESSSEEEE
T ss_pred EEEEecCCCEEeehhhcCCCCcceEEEEcCCEEEE
Confidence 45678999999999999999999999998887653
No 69
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=91.90 E-value=0.15 Score=35.70 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=26.8
Q ss_pred EEeCCCCcchhhhh---hhCCC------cceEEEEEeeeeee
Q psy1917 117 AVMGPGKAFGELAI---LYNCT------RTASIRGFLTVLHF 149 (212)
Q Consensus 117 ~~l~~g~~fGe~~l---l~~~~------r~a~v~a~~~~~~~ 149 (212)
..+.+|++|||+++ +.+.+ ++++++|.+++..+
T Consensus 74 ~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 115 (137)
T 1wgp_A 74 SLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAF 115 (137)
T ss_dssp EECCTTCBSSTHHHHHHHCSSCCSSSCBCSSEEEESSCBEEE
T ss_pred eeecCCCEecHHHHHHHhccccccccccceeEEEEeEEEEEE
Confidence 36889999999996 88875 57899998877654
No 70
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=91.34 E-value=0.2 Score=38.50 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=30.6
Q ss_pred EEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 115 ILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 115 ~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
.+..+++|++|||.+++.+.++.++++|.+++..+
T Consensus 75 ~~~~~~~G~~~G~~~~~~~~~~~~~~~A~~~~~v~ 109 (232)
T 2gau_A 75 ISRIVKPGQFFGMRPYFAEETCSSTAIAVENSKVL 109 (232)
T ss_dssp EEEEECTTCEESHHHHHHTSCCSSEEEESSCEEEE
T ss_pred EEEEeCCCCEeeeehhhCCCCcceEEEEecceEEE
Confidence 56778999999999999999999999998877653
No 71
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=91.31 E-value=2.4 Score=28.89 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=32.3
Q ss_pred ceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCC
Q psy1917 78 MHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPG 122 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g 122 (212)
+....+++|..+-..-.+...+++|++|.+.+..+++ ...+++|
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~~~-~~~l~~G 81 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVDGA-QRRLHQG 81 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEETTE-EEEECTT
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEECCE-EEEECCC
Confidence 4567788898886665666789999999999988664 2334444
No 72
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=90.66 E-value=2.2 Score=33.01 Aligned_cols=46 Identities=13% Similarity=0.229 Sum_probs=36.5
Q ss_pred hceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCC
Q psy1917 77 SMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGK 123 (212)
Q Consensus 77 ~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~ 123 (212)
.+....+.+|+.+-..-.+++.+++|++|.+++..+++. ..+++|+
T Consensus 38 ~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~~~~-~~l~~Gd 83 (227)
T 3rns_A 38 YISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIENNK-KTISNGD 83 (227)
T ss_dssp EEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEESSCE-EEEETTE
T ss_pred EEEEEEECCCCccCccccCCCEEEEEEeCEEEEEECCEE-EEECCCC
Confidence 456788999999988777889999999999999987642 4455554
No 73
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=90.55 E-value=0.16 Score=39.10 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=30.1
Q ss_pred EEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 115 ILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 115 ~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
.+..+++|++|||.+++.+.++.++++|.+++..+
T Consensus 71 ~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~v~ 105 (231)
T 3e97_A 71 VLGDIYAPGVVGETAVLAHQERSASVRALTPVRTL 105 (231)
T ss_dssp EEEEEESSEEESTTTTTCCCCCCEEEEESSCEEEE
T ss_pred EEEecCCCCEEeeHHHhCCCCceEEEEECCcEEEE
Confidence 35668899999999999999999999998877643
No 74
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=90.23 E-value=0.19 Score=38.75 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=30.2
Q ss_pred EEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 115 ILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 115 ~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
.+..+++|++||+.+++.+.++.++++|.+++..+
T Consensus 76 ~~~~~~~G~~~G~~~~~~~~~~~~~~~a~~~~~v~ 110 (237)
T 3fx3_A 76 VVSVFTRGESFGEAVALRNTPYPVSAEAVTPCEVM 110 (237)
T ss_dssp EEEEEETTEEECHHHHHHTCCCSSEEEESSSEEEE
T ss_pred EEEEeCCCCEechHHHhcCCCCCceEEECCceEEE
Confidence 35567899999999999999999999998887653
No 75
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=89.72 E-value=0.22 Score=38.47 Aligned_cols=35 Identities=9% Similarity=-0.000 Sum_probs=29.9
Q ss_pred EEEEeCCCCcchhhhhhhCCC-cceEEEEEeeeeee
Q psy1917 115 ILAVMGPGKAFGELAILYNCT-RTASIRGFLTVLHF 149 (212)
Q Consensus 115 ~~~~l~~g~~fGe~~ll~~~~-r~a~v~a~~~~~~~ 149 (212)
.+..+++|++|||.+++.+.+ +.++++|.+++..+
T Consensus 85 ~l~~~~~G~~fG~~~~~~~~~~~~~~~~A~~~~~v~ 120 (232)
T 1zyb_A 85 VIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTV 120 (232)
T ss_dssp EEEEEESSEEECGGGGSSSCCBCSSEEEESSCEEEE
T ss_pred EEEEccCCCeeeehHHhCCCCCCceEEEEccceEEE
Confidence 456678999999999999998 89999998887654
No 76
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=89.42 E-value=3.5 Score=27.71 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=29.6
Q ss_pred ceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCC
Q psy1917 78 MHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGK 123 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~ 123 (212)
+....+++|..+-....+...+++|++|.+.+..+++ ...+++|+
T Consensus 40 ~~~~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i~~~-~~~l~~Gd 84 (114)
T 2ozj_A 40 ISLFSFADGESVSEEEYFGDTLYLILQGEAVITFDDQ-KIDLVPED 84 (114)
T ss_dssp EEEEEEETTSSCCCBCCSSCEEEEEEEEEEEEEETTE-EEEECTTC
T ss_pred EEEEEECCCCccccEECCCCeEEEEEeCEEEEEECCE-EEEecCCC
Confidence 3444566777664444556789999999999988653 33444443
No 77
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=89.40 E-value=0.11 Score=36.41 Aligned_cols=31 Identities=13% Similarity=0.042 Sum_probs=26.7
Q ss_pred eCCCCcchhhhhhhCCCcceEE-EEEeeeeee
Q psy1917 119 MGPGKAFGELAILYNCTRTASI-RGFLTVLHF 149 (212)
Q Consensus 119 l~~g~~fGe~~ll~~~~r~a~v-~a~~~~~~~ 149 (212)
+.+|++||+.+++.+.++.+++ +|.+++..+
T Consensus 81 l~~G~~fG~~~~~~~~~~~~~~~~a~~~~~~~ 112 (134)
T 2d93_A 81 LFMGNSFGITPTLDKQYMHGIVRTKVDDCQFV 112 (134)
T ss_dssp ECTTCEESCCSSSCCEECCSEEEESSSSEEEE
T ss_pred ecCCCccChhHhcCCCcceeEEEEEecceEEE
Confidence 5799999999999999999988 887777554
No 78
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=89.30 E-value=0.21 Score=37.48 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=28.0
Q ss_pred EEEEeCCCCcchhhhhhhCC----CcceEEEEEeeeeee
Q psy1917 115 ILAVMGPGKAFGELAILYNC----TRTASIRGFLTVLHF 149 (212)
Q Consensus 115 ~~~~l~~g~~fGe~~ll~~~----~r~a~v~a~~~~~~~ 149 (212)
.+..+++|++|||.+++.+. ++.++++|.+++..+
T Consensus 55 ~~~~~~~g~~~G~~~~~~~~~~~~~~~~~~~A~~~~~v~ 93 (207)
T 2oz6_A 55 IIGYLNSGDFFGELGLFEKEGSEQERSAWVRAKVECEVA 93 (207)
T ss_dssp EEEEEETTCEESCTTTCC-----CBCCSEEEESSCEEEE
T ss_pred EEEEcCCCCCcccHHHhcCCCCCCCcceEEEECCcEEEE
Confidence 35567899999999999998 899999998887653
No 79
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=89.23 E-value=0.26 Score=37.12 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=29.7
Q ss_pred EEEEeCCCCcchhhhhhhCC-CcceEEEEEeeeeee
Q psy1917 115 ILAVMGPGKAFGELAILYNC-TRTASIRGFLTVLHF 149 (212)
Q Consensus 115 ~~~~l~~g~~fGe~~ll~~~-~r~a~v~a~~~~~~~ 149 (212)
.+..+++|++||+.+++.+. ++.++++|.+++..+
T Consensus 61 ~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~ 96 (210)
T 3ryp_A 61 ILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVA 96 (210)
T ss_dssp EEEEEETTCEESCTTTTSTTCBCSSEEEESSCEEEE
T ss_pred EEEEcCCCCEeeeHHHhcCCCCceEEEEECCcEEEE
Confidence 34567899999999999998 899999998887654
No 80
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=88.72 E-value=0.28 Score=38.70 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=30.1
Q ss_pred EEEEeCCCCcchhhhhhhCC-CcceEEEEEeeeeee
Q psy1917 115 ILAVMGPGKAFGELAILYNC-TRTASIRGFLTVLHF 149 (212)
Q Consensus 115 ~~~~l~~g~~fGe~~ll~~~-~r~a~v~a~~~~~~~ 149 (212)
.+..+++|++|||.+++.+. ++.++++|.+++..+
T Consensus 111 ~~~~~~~G~~~Ge~~~~~~~~~~~~~~~A~~~~~l~ 146 (260)
T 3kcc_A 111 ILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVA 146 (260)
T ss_dssp EEEEEETTCEESCTTTTSTTCBCCSEEEESSCEEEE
T ss_pred EEEEcCCCCEEeehHHhCCCCCCceEEEECCCeEEE
Confidence 35678899999999999998 899999998887654
No 81
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=88.46 E-value=0.43 Score=36.37 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=29.2
Q ss_pred EEEEeCCCCcchhhhhhhCC-CcceEEEEEeeeeee
Q psy1917 115 ILAVMGPGKAFGELAILYNC-TRTASIRGFLTVLHF 149 (212)
Q Consensus 115 ~~~~l~~g~~fGe~~ll~~~-~r~a~v~a~~~~~~~ 149 (212)
.+..+++|++|||.+++.+. ++.+++.|.+++..+
T Consensus 76 ~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~ 111 (230)
T 3iwz_A 76 VLGYFGSGEFVGEMGLFIESDTREVILRTRTQCELA 111 (230)
T ss_dssp EEEEECTTCEESCGGGTSCCSBCCSEEEESSCEEEE
T ss_pred EEEEecCCCEEEehhhhcCCCCceeEEEEcCcEEEE
Confidence 35678999999999999985 789999998877653
No 82
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=88.26 E-value=0.38 Score=35.76 Aligned_cols=34 Identities=6% Similarity=-0.138 Sum_probs=28.7
Q ss_pred EEEeCCCCcchhh-hhhhCCCcceEEEEEeeeeee
Q psy1917 116 LAVMGPGKAFGEL-AILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 116 ~~~l~~g~~fGe~-~ll~~~~r~a~v~a~~~~~~~ 149 (212)
+..+.+|++|||. +++.+.|+.++++|.+++..+
T Consensus 73 ~~~~~~g~~~ge~~~~~~~~~~~~~~~a~~~~~v~ 107 (194)
T 3dn7_A 73 TQFAIENWWLSDYMAFQKQQPADFYIQSVENCELL 107 (194)
T ss_dssp EEEEETTCEECCHHHHHHTCBCSSEEEESSCEEEE
T ss_pred EEEccCCcEEeehHHHhcCCCCceEEEEECCEEEE
Confidence 4567899999998 778999999999998887653
No 83
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=87.81 E-value=0.42 Score=36.29 Aligned_cols=34 Identities=6% Similarity=-0.117 Sum_probs=29.2
Q ss_pred EEEEeCCCCcchhhhhhhCC-CcceEEEEEeeeee
Q psy1917 115 ILAVMGPGKAFGELAILYNC-TRTASIRGFLTVLH 148 (212)
Q Consensus 115 ~~~~l~~g~~fGe~~ll~~~-~r~a~v~a~~~~~~ 148 (212)
.+..+++|++||+.+++.+. ++.++++|.+++..
T Consensus 64 ~~~~~~~G~~~G~~~~~~~~~~~~~~~~A~~~~~v 98 (213)
T 1o5l_A 64 EIDEIKPVQIIASGFIFSSEPRFPVNVVAGENSKI 98 (213)
T ss_dssp EEEEECSSEESSGGGTTSSSCBCSSEEEESSSEEE
T ss_pred EEEEecCCCEeeeHHHhcCCCCceEEEEEccceEE
Confidence 35678999999999999886 89999999888765
No 84
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=87.17 E-value=0.53 Score=35.30 Aligned_cols=34 Identities=26% Similarity=0.300 Sum_probs=28.8
Q ss_pred EEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 115 ILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 115 ~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
.+..+++|++||+ +++.+.++.++++|.+++..+
T Consensus 49 ~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~~v~ 82 (202)
T 2zcw_A 49 TLRLVRPGGFFGE-EALFGQERIYFAEAATDVRLE 82 (202)
T ss_dssp EEEEECTTCEECT-HHHHTCCBCSEEEESSCEEEE
T ss_pred EEEEecCCCEeee-hhcCCCCcceEEEEcccEEEE
Confidence 3567899999999 999999999999998777544
No 85
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=86.66 E-value=0.24 Score=37.79 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=29.6
Q ss_pred EEEEeCCCCcchhhhhhhCCC-cceEEEEEeeeeee
Q psy1917 115 ILAVMGPGKAFGELAILYNCT-RTASIRGFLTVLHF 149 (212)
Q Consensus 115 ~~~~l~~g~~fGe~~ll~~~~-r~a~v~a~~~~~~~ 149 (212)
.+..+++|++||+.+++.+.+ +.++++|.+++..+
T Consensus 74 ~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~ 109 (227)
T 3dkw_A 74 ILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLF 109 (227)
T ss_dssp CCCEECTTEEESCTTTTTTCSBCSSCEEESSCCEEE
T ss_pred EEEEcCCCCEeeeHHhcCCCCCCceEEEEcCcEEEE
Confidence 345678999999999999999 99999998777553
No 86
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=86.31 E-value=0.86 Score=34.37 Aligned_cols=35 Identities=9% Similarity=-0.065 Sum_probs=30.0
Q ss_pred EEEEeCCCCc--chhhhhhhCCCcceEEEEEeeeeee
Q psy1917 115 ILAVMGPGKA--FGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 115 ~~~~l~~g~~--fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
.+..+++|++ ||+.+++.+.|+.++++|.+++..+
T Consensus 68 ~~~~~~~G~~~~~g~~~~~~~~~~~~~~~a~~~~~~~ 104 (220)
T 3dv8_A 68 TLYRLFDMDMCLLSASCIMRSIQFEVTIEAEKDTDLW 104 (220)
T ss_dssp EEEEECTTCEESGGGGGGCTTCCCCCEEEESSCEEEE
T ss_pred EEEecCCCCeeehhHHHHhCCCCCceEEEEeeeeEEE
Confidence 3456789999 8999999999999999998887654
No 87
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=85.94 E-value=1.5 Score=28.84 Aligned_cols=48 Identities=4% Similarity=0.049 Sum_probs=34.0
Q ss_pred ceEEEecCCCeEEccCCCCC-eeEEEecCEEEEEECCE-EEEEeCCCCcc
Q psy1917 78 MHQAEYKADSYVITEGEAGN-DLFVSAEGEFQVIKDGK-ILAVMGPGKAF 125 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~~~-~~yiI~~G~v~v~~~~~-~~~~l~~g~~f 125 (212)
+....+++|...-..-.+.. .+++|++|.+.+..++. ....+++|+++
T Consensus 20 ~~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~~~~l~~Gd~~ 69 (97)
T 2fqp_A 20 VTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSVTSQLTRGVSY 69 (97)
T ss_dssp EEEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEEEEEEECTTCCE
T ss_pred EEEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCEEEEEcCCCEE
Confidence 34567788876522222334 49999999999999875 67789999864
No 88
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=83.98 E-value=7.4 Score=25.95 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=28.1
Q ss_pred ceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCC
Q psy1917 78 MHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPG 122 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g 122 (212)
+....+++|..+-..-.....+++|++|.+.+..+++ ...+++|
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~-~~~l~~G 79 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNVDGV-IKVLTAG 79 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEETTE-EEEECTT
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEECCE-EEEeCCC
Confidence 4566778887653333335678999999999887553 2334444
No 89
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=83.34 E-value=1.2 Score=34.54 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=28.3
Q ss_pred EEEEeCCCCcchhhhhhhCCC--cceEEEEEeeeeee
Q psy1917 115 ILAVMGPGKAFGELAILYNCT--RTASIRGFLTVLHF 149 (212)
Q Consensus 115 ~~~~l~~g~~fGe~~ll~~~~--r~a~v~a~~~~~~~ 149 (212)
.+..+.+|++||+.+++.+.+ +.++++|.+++..+
T Consensus 85 ~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~ 121 (243)
T 3la7_A 85 TVALLRENSVFGVLSLLTGNKSDRFYHAVAFTPVELL 121 (243)
T ss_dssp EEEEECTTCEESCHHHHSSCCSBCCEEEEESSSEEEE
T ss_pred EEEEecCCCEEcchHHhCCCCCcceEEEEEccceEEE
Confidence 355689999999999999986 56899998777543
No 90
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=82.64 E-value=3.4 Score=28.64 Aligned_cols=44 Identities=25% Similarity=0.452 Sum_probs=34.0
Q ss_pred eEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 79 HQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 79 ~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
....+.+|..+-.. ...+.+++|++|++.+..+++ ...+++||+
T Consensus 43 ~~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~~g~-~~~l~~GD~ 86 (119)
T 3lwc_A 43 GYGRYAPGQSLTET-MAVDDVMIVLEGRLSVSTDGE-TVTAGPGEI 86 (119)
T ss_dssp EEEEECTTCEEEEE-CSSEEEEEEEEEEEEEEETTE-EEEECTTCE
T ss_pred EEEEECCCCCcCcc-CCCCEEEEEEeCEEEEEECCE-EEEECCCCE
Confidence 45677888766443 267789999999999999764 567999986
No 91
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=82.36 E-value=8.7 Score=25.55 Aligned_cols=45 Identities=9% Similarity=0.130 Sum_probs=29.8
Q ss_pred ceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCC
Q psy1917 78 MHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGK 123 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~ 123 (212)
+....+++|..+-..-.....+++|++|.+.+..+++ ...+++|+
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~~~~-~~~l~~Gd 86 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITIDQE-TYRVAEGQ 86 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEETTE-EEEEETTC
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEECCE-EEEECCCC
Confidence 4566778888764433345689999999999987653 23344443
No 92
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=80.18 E-value=6.9 Score=25.75 Aligned_cols=46 Identities=11% Similarity=0.124 Sum_probs=32.2
Q ss_pred ceEEEecCCCeEEcc--CCC-CCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 78 MHQAEYKADSYVITE--GEA-GNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~--Gd~-~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
+....+++|..+-.. -.. ...+++|++|.+.+..+++ ...+++|++
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~~~-~~~l~~Gd~ 71 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVDGH-TQALQAGSL 71 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEETTE-EEEECTTEE
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEECCE-EEEeCCCCE
Confidence 456678888876443 333 5689999999999988764 345666653
No 93
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=80.07 E-value=1.2 Score=40.86 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=27.6
Q ss_pred EeCCCCcchhhhhhhCCCcceEEEEEe-eeeee
Q psy1917 118 VMGPGKAFGELAILYNCTRTASIRGFL-TVLHF 149 (212)
Q Consensus 118 ~l~~g~~fGe~~ll~~~~r~a~v~a~~-~~~~~ 149 (212)
.+++|++|||.+++.+.++.++++|.+ ++..+
T Consensus 97 ~l~~Gd~fGe~al~~~~~~~~tv~A~edd~~ll 129 (694)
T 3cf6_E 97 TLHEGDDFGKLALVNDAPRAASIVLREDNCHFL 129 (694)
T ss_dssp EEETTCEECHHHHHHTCBCSSEEEECSSSEEEE
T ss_pred EeCCCCEeehHHHhCCCCceEEEEEeeCceEEE
Confidence 467899999999999999999999988 47543
No 94
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=80.05 E-value=3.2 Score=27.89 Aligned_cols=45 Identities=16% Similarity=0.094 Sum_probs=33.3
Q ss_pred ceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 78 MHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
+....+.+|..-.+ .....+++|++|.+.+..++.....+++||+
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~~g~~~~l~~GD~ 77 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTTEDGKKYVIEKGDL 77 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEETTCCEEEEETTCE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEECCCCEEEECCCCE
Confidence 34566777776554 3457899999999999997345677888875
No 95
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=79.79 E-value=0.36 Score=40.07 Aligned_cols=31 Identities=35% Similarity=0.627 Sum_probs=0.0
Q ss_pred eCCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 119 MGPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 119 l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
+++|++|||.+++.+.++.++++|.+++..+
T Consensus 290 l~~G~~fGe~~~l~~~~~~~~~~A~~~~~l~ 320 (355)
T 3beh_A 290 LGPGAFFGEMALISGEPRSATVSAATTVSLL 320 (355)
T ss_dssp -------------------------------
T ss_pred ECCCCEEeehHHhCCCCcceEEEECccEEEE
Confidence 3679999999999999999999998777543
No 96
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=79.67 E-value=4.4 Score=27.66 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=35.2
Q ss_pred hceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 77 SMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 77 ~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
.+....+++|..+-..-.....+++|++|.+.+..+++ ...+++|++
T Consensus 42 ~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~-~~~l~~Gd~ 88 (126)
T 4e2g_A 42 MLNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIGEE-TRVLRPGMA 88 (126)
T ss_dssp EEEEEEECTTCEEEEECCSSEEEEEEEEECEEEEETTE-EEEECTTEE
T ss_pred EEEEEEECCCCcCCCccCCCceEEEEEEeEEEEEECCE-EEEeCCCCE
Confidence 34667788888775544445789999999999999774 467777764
No 97
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=79.44 E-value=11 Score=28.87 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=27.7
Q ss_pred ceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECC
Q psy1917 78 MHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDG 113 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~ 113 (212)
+....+++|..+-..-.+.+.+++|++|.+.+..++
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~g 190 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYVDG 190 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEETT
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEECC
Confidence 456788888887655555667999999999998765
No 98
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=79.10 E-value=8.7 Score=24.69 Aligned_cols=45 Identities=16% Similarity=0.188 Sum_probs=28.8
Q ss_pred ceEEEecCCCeEEccCCC-CCeeEEEecCEEEEEECCEEEEEeCCCC
Q psy1917 78 MHQAEYKADSYVITEGEA-GNDLFVSAEGEFQVIKDGKILAVMGPGK 123 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~-~~~~yiI~~G~v~v~~~~~~~~~l~~g~ 123 (212)
+....+++|..+-..-.. .+.+++|++|.+.+..+++ ...+++|+
T Consensus 30 ~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~~~-~~~l~~Gd 75 (105)
T 1v70_A 30 YDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGEE-EALLAPGM 75 (105)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEETTE-EEEECTTC
T ss_pred EEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEECCE-EEEeCCCC
Confidence 355677888776433323 3468999999999987653 33444443
No 99
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=77.01 E-value=9.9 Score=25.06 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=20.1
Q ss_pred ecCCCeEEccCCCCCeeEEEecCEEEEEECC
Q psy1917 83 YKADSYVITEGEAGNDLFVSAEGEFQVIKDG 113 (212)
Q Consensus 83 ~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~ 113 (212)
..+|....+.-+..+.+++|++|.+.+..++
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~ 65 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDFAD 65 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEETT
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEECC
Confidence 3445544444433478999999999998764
No 100
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=76.77 E-value=10 Score=29.62 Aligned_cols=47 Identities=11% Similarity=-0.007 Sum_probs=32.8
Q ss_pred hhceEEEecCCCeEEc-cCCCCCeeEEEecCEEEEEECCEEEEEeCCCC
Q psy1917 76 ESMHQAEYKADSYVIT-EGEAGNDLFVSAEGEFQVIKDGKILAVMGPGK 123 (212)
Q Consensus 76 ~~~~~~~~~~g~~I~~-~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~ 123 (212)
..+....+++|..+=. .-......++|++|+..+..+++ ...+++||
T Consensus 165 ~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~~~~-~~~l~~GD 212 (246)
T 1sfn_A 165 FMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLEEN-YYPVTAGD 212 (246)
T ss_dssp EEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEETTE-EEEEETTC
T ss_pred eEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEECCE-EEEcCCCC
Confidence 3467888999987753 34455689999999999988653 33455554
No 101
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=76.48 E-value=2.8 Score=28.68 Aligned_cols=48 Identities=10% Similarity=0.116 Sum_probs=33.2
Q ss_pred hceEEEecCCCeEEccCCCC-CeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 77 SMHQAEYKADSYVITEGEAG-NDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 77 ~~~~~~~~~g~~I~~~Gd~~-~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
.+....+++|..+-..-... ..+++|++|.+.+...+.....+++|++
T Consensus 40 ~~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~~~~~~l~~Gd~ 88 (125)
T 3h8u_A 40 VVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNGIVTHLKAGDI 88 (125)
T ss_dssp EEEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECSTTCEEEEETTEE
T ss_pred EEEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECCCeEEEeCCCCE
Confidence 34567788888775444443 5788999999999883334566777764
No 102
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=76.40 E-value=7.6 Score=28.44 Aligned_cols=46 Identities=15% Similarity=0.263 Sum_probs=34.8
Q ss_pred ceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 78 MHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
+....+++|..+-..-.....+++|++|.+.+..+++ ...+++|++
T Consensus 58 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~~~-~~~l~~Gd~ 103 (167)
T 3ibm_A 58 TRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLDDR-VEPLTPLDC 103 (167)
T ss_dssp EEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEETTE-EEEECTTCE
T ss_pred EEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEECCE-EEEECCCCE
Confidence 4566778887664444456789999999999998775 667888875
No 103
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=76.24 E-value=1.4 Score=31.04 Aligned_cols=45 Identities=18% Similarity=0.190 Sum_probs=32.2
Q ss_pred EEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcc
Q psy1917 80 QAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAF 125 (212)
Q Consensus 80 ~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~f 125 (212)
.-...+|..-.+..+ .+.+++|++|.+.+..++.....+++||++
T Consensus 53 ~w~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~~g~~~~l~~GD~~ 97 (123)
T 3bcw_A 53 VWESTSGSFQSNTTG-YIEYCHIIEGEARLVDPDGTVHAVKAGDAF 97 (123)
T ss_dssp EEEEEEEEEECCCTT-EEEEEEEEEEEEEEECTTCCEEEEETTCEE
T ss_pred EEEECCCceeeEcCC-CcEEEEEEEEEEEEEECCCeEEEECCCCEE
Confidence 445566666655433 378999999999999855556788999863
No 104
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=75.37 E-value=3.5 Score=27.87 Aligned_cols=46 Identities=7% Similarity=0.020 Sum_probs=31.2
Q ss_pred eEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 79 HQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 79 ~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
....+++|..+-..-.....+++|++|.+.+..+++....+++|++
T Consensus 30 ~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~~~~l~~Gd~ 75 (117)
T 2b8m_A 30 NHIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLEDQEPHNYKEGNI 75 (117)
T ss_dssp EEEEEETTCBCCCEECSSCEEEEEEESEEEEEETTSCCEEEETTCE
T ss_pred EEEEECCCCcCCCEeCCCcEEEEEEeCEEEEEECCEEEEEeCCCCE
Confidence 3455666665422222455789999999999998765547788865
No 105
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=75.26 E-value=3.8 Score=29.04 Aligned_cols=44 Identities=16% Similarity=0.274 Sum_probs=31.5
Q ss_pred eEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcc
Q psy1917 79 HQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAF 125 (212)
Q Consensus 79 ~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~f 125 (212)
....+.+|..-.+. ..+.+++|++|.+.+..+++. ..+++||++
T Consensus 60 ~~~~~~pG~~~~h~--~~~E~~~VLeG~~~l~~~g~~-~~l~~GD~i 103 (133)
T 2pyt_A 60 GFMQWDNAFFPWTL--NYDEIDMVLEGELHVRHEGET-MIAKAGDVM 103 (133)
T ss_dssp EEEEEEEEEEEEEC--SSEEEEEEEEEEEEEEETTEE-EEEETTCEE
T ss_pred EEEEECCCCccccC--CCCEEEEEEECEEEEEECCEE-EEECCCcEE
Confidence 45567777432332 356899999999999998754 478999863
No 106
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=73.63 E-value=2.5 Score=31.57 Aligned_cols=49 Identities=12% Similarity=0.081 Sum_probs=34.9
Q ss_pred hceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcc
Q psy1917 77 SMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAF 125 (212)
Q Consensus 77 ~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~f 125 (212)
.+....+++|...-..-.....+++|++|++.+..++.....|++||++
T Consensus 80 ~~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~ge~~~L~~GDsi 128 (172)
T 3es1_A 80 VIRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDDGAKRTVRQGGII 128 (172)
T ss_dssp EEEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGGGCEEEECTTCEE
T ss_pred EEEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECCCeEEEECCCCEE
Confidence 3567778888754333333446889999999998873456789999874
No 107
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=73.63 E-value=6.2 Score=28.41 Aligned_cols=47 Identities=9% Similarity=0.099 Sum_probs=34.5
Q ss_pred ceEEEecCCCe-E-EccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcc
Q psy1917 78 MHQAEYKADSY-V-ITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAF 125 (212)
Q Consensus 78 ~~~~~~~~g~~-I-~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~f 125 (212)
+....+++|.. . .+.-...+.+++|++|.+.+..+++ ...+++||++
T Consensus 48 ~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~~~-~~~l~~Gd~i 96 (162)
T 3l2h_A 48 IHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTMEND-QYPIAPGDFV 96 (162)
T ss_dssp EEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEETTE-EEEECTTCEE
T ss_pred EEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEECCE-EEEeCCCCEE
Confidence 45677888873 2 3333356789999999999999875 4779999864
No 108
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=73.31 E-value=5.4 Score=29.72 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=32.9
Q ss_pred eEEEecCCCeEE---ccCCCCCeeEEEecCEEEEEECCE---EEEEeCCCCc
Q psy1917 79 HQAEYKADSYVI---TEGEAGNDLFVSAEGEFQVIKDGK---ILAVMGPGKA 124 (212)
Q Consensus 79 ~~~~~~~g~~I~---~~Gd~~~~~yiI~~G~v~v~~~~~---~~~~l~~g~~ 124 (212)
....+++|...- ..-.++..+++|++|.+.+..++. ....+++||+
T Consensus 120 ~~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~~~~l~~GD~ 171 (198)
T 2bnm_A 120 LVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGAS 171 (198)
T ss_dssp EEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCEEEEECTTCE
T ss_pred EEEEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcccEEECCCCE
Confidence 455777877543 223334689999999999998762 5678999986
No 109
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=73.00 E-value=4.7 Score=31.30 Aligned_cols=45 Identities=9% Similarity=0.037 Sum_probs=34.2
Q ss_pred EEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 80 QAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 80 ~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
...+.+|...=..-.+.+.+|+|++|.+++..++.....+++|++
T Consensus 136 ~v~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~g~~~~l~pGd~ 180 (217)
T 4b29_A 136 VGYWGPGLDYGWHEHLPEELYSVVSGRALFHLRNAPDLMLEPGQT 180 (217)
T ss_dssp EEEECSSCEEEEEECSSEEEEEEEEECEEEEETTSCCEEECTTCE
T ss_pred EEEECCCCcCCCCCCCCceEEEEEeCCEEEEECCCCEEecCCCCE
Confidence 455566655433345577899999999999998778889999975
No 110
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=72.62 E-value=13 Score=27.36 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=23.5
Q ss_pred EEEecCCCeEE--ccCCCCCeeEEEecCEEEEEECCEEEEEeCCCC
Q psy1917 80 QAEYKADSYVI--TEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGK 123 (212)
Q Consensus 80 ~~~~~~g~~I~--~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~ 123 (212)
...+++|.... ..-.....+++|++|.+.+..+++ ...|++||
T Consensus 108 ~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~~~-~~~l~~GD 152 (192)
T 1y9q_A 108 EITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDEQ-WHELQQGE 152 (192)
T ss_dssp EEEECTTCEEEECCCSTTCEEEEEEEESCEEEEETTE-EEEECTTC
T ss_pred EEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEECCE-EEEeCCCC
Confidence 34555665543 112223467778888887777543 33455554
No 111
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=71.88 E-value=7.5 Score=28.30 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=34.1
Q ss_pred ceEEEecCCCeE--EccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 78 MHQAEYKADSYV--ITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 78 ~~~~~~~~g~~I--~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
+....+++|... .+.-...+.+++|++|.+.+..+++ ...+++|++
T Consensus 45 ~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~~~-~~~l~~GD~ 92 (163)
T 3i7d_A 45 VNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQG-EHPMVPGDC 92 (163)
T ss_dssp EEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEETTE-EEEECTTCE
T ss_pred EEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEECCE-EEEeCCCCE
Confidence 456778888854 3333334689999999999999875 577888875
No 112
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=70.81 E-value=18 Score=29.19 Aligned_cols=35 Identities=17% Similarity=0.089 Sum_probs=29.5
Q ss_pred ceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECC
Q psy1917 78 MHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDG 113 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~ 113 (212)
.+..-|.+|+.+..+... +.++.+++|+..|..++
T Consensus 209 teV~l~G~Ges~~~~~~~-d~wiWqLEGss~Vt~~~ 243 (286)
T 2qnk_A 209 TQVIAYGQGSSEGLRQNV-DVWLWQLEGSSVVTMGG 243 (286)
T ss_dssp EEEEEECSEEEEECCCSS-CEEEEEEESCEEEEETT
T ss_pred eEEEEEcCCccccccCcC-cEEEEEEcCceEEEECC
Confidence 356668899999888887 99999999999888765
No 113
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=70.65 E-value=3.2 Score=31.99 Aligned_cols=32 Identities=9% Similarity=0.078 Sum_probs=26.3
Q ss_pred EEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 115 ILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 115 ~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
.+..+++|++||+ ++.+. +.++++|.+++..+
T Consensus 74 ~~~~~~~G~~~G~--~l~~~-~~~~~~A~~~~~v~ 105 (250)
T 3e6c_C 74 LLYYAGGNSLIGK--LYPTG-NNIYATAMEPTRTC 105 (250)
T ss_dssp EEEEECTTCEECC--CSCCS-CCEEEEESSSEEEE
T ss_pred EEEEecCCCEEee--ecCCC-CceEEEEcccEEEE
Confidence 3567899999999 77778 99999998887653
No 114
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=70.28 E-value=6.3 Score=28.12 Aligned_cols=47 Identities=11% Similarity=0.220 Sum_probs=33.5
Q ss_pred ceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 78 MHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
+....+++|..+-..--....+++|++|.+.+..+++....+++|++
T Consensus 50 ~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~l~~Gd~ 96 (147)
T 2f4p_A 50 VYDVVFEPGARTHWHSHPGGQILIVTRGKGFYQERGKPARILKKGDV 96 (147)
T ss_dssp EEEEEECTTCEECSEECTTCEEEEEEEEEEEEEETTSCCEEEETTCE
T ss_pred EEEEEECCCCccCceECCCceEEEEEeCEEEEEECCEEEEEECCCCE
Confidence 35667788876643333346799999999999988764356777765
No 115
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=68.32 E-value=7.4 Score=29.20 Aligned_cols=40 Identities=15% Similarity=0.354 Sum_probs=33.3
Q ss_pred hhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCCeeEEE
Q psy1917 57 IMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVS 102 (212)
Q Consensus 57 l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yiI 102 (212)
+-++|+|.+++-.+..+++.. ..|++|+|+...++++-+.
T Consensus 11 ~I~HP~F~n~s~~qAe~~L~~------~~G~~liRPSsk~~~ltit 50 (178)
T 2xp1_A 11 FYKHPLFKNFNVTESENYLRS------STDDFLIRKGSRHGYCVLV 50 (178)
T ss_dssp GGGSTTEECCCHHHHHHHHHH------SSCCEEEEECSSTTEEEEE
T ss_pred eccCCCcCCCCHHHHHHHHhc------CCCCEEEeecCCCCcEEEE
Confidence 567999999999999998888 2599999999888765443
No 116
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=67.32 E-value=4.6 Score=28.12 Aligned_cols=45 Identities=20% Similarity=0.181 Sum_probs=32.5
Q ss_pred EEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcc
Q psy1917 80 QAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAF 125 (212)
Q Consensus 80 ~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~f 125 (212)
.=...+|..-+... ..+.++.|++|.+.+..++.....+++||.|
T Consensus 46 vWe~tPG~~~~~~~-~~~E~~~iLeG~~~lt~ddG~~~~l~aGD~~ 90 (116)
T 3es4_A 46 VWMAEPGIYNYAGR-DLEETFVVVEGEALYSQADADPVKIGPGSIV 90 (116)
T ss_dssp EEEECSEEEEECCC-SEEEEEEEEECCEEEEETTCCCEEECTTEEE
T ss_pred EEecCCceeECeeC-CCcEEEEEEEeEEEEEeCCCeEEEECCCCEE
Confidence 33566676655553 2347999999999999876667788888753
No 117
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=67.31 E-value=14 Score=25.09 Aligned_cols=45 Identities=9% Similarity=0.108 Sum_probs=29.0
Q ss_pred ceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCC
Q psy1917 78 MHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGK 123 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~ 123 (212)
+....+++|...-..-.....+++|++|.+.+..+++ ...+++|+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i~~~-~~~l~~Gd 80 (128)
T 4i4a_A 36 GAWCIVRPETKSFRHSHNEYELFIVIQGNAIIRINDE-DFPVTKGD 80 (128)
T ss_dssp EEEEEECTTEECCCBCCSSEEEEEEEESEEEEEETTE-EEEEETTC
T ss_pred EEEEEECCCCccCCEecCCeEEEEEEeCEEEEEECCE-EEEECCCc
Confidence 3556677776443333345579999999999988764 33445554
No 118
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=67.14 E-value=22 Score=22.72 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=16.4
Q ss_pred ccCCCCCeeEEEecCEEEEEECC
Q psy1917 91 TEGEAGNDLFVSAEGEFQVIKDG 113 (212)
Q Consensus 91 ~~Gd~~~~~yiI~~G~v~v~~~~ 113 (212)
+.-+....+++|++|.+.+..++
T Consensus 45 H~H~~~~e~~~v~~G~~~~~~~~ 67 (102)
T 3d82_A 45 HEHADTDEVFIVMEGTLQIAFRD 67 (102)
T ss_dssp BCCTTCCEEEEEEESEEEEECSS
T ss_pred eeCCCCcEEEEEEeCEEEEEECC
Confidence 33333367999999999987654
No 119
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=66.93 E-value=8.2 Score=28.37 Aligned_cols=46 Identities=9% Similarity=0.032 Sum_probs=32.7
Q ss_pred ceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 78 MHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
+....+++|..+-..-.....+++|++|.+.+..+++ ...+++|++
T Consensus 55 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v~g~-~~~l~~GD~ 100 (166)
T 3jzv_A 55 LRYFEVGPGGHSTLERHQHAHGVMILKGRGHAMVGRA-VSAVAPYDL 100 (166)
T ss_dssp EEEEEEEEEEECCCBBCSSCEEEEEEEECEEEEETTE-EEEECTTCE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEeCEEEEEECCE-EEEeCCCCE
Confidence 3455667776654433445678999999999998775 567888875
No 120
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=66.44 E-value=16 Score=25.36 Aligned_cols=45 Identities=16% Similarity=0.128 Sum_probs=28.5
Q ss_pred ceEEEecCCCeEEccCCC-CCeeEEEecCEEEEEECCEEEEEeCCCC
Q psy1917 78 MHQAEYKADSYVITEGEA-GNDLFVSAEGEFQVIKDGKILAVMGPGK 123 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~-~~~~yiI~~G~v~v~~~~~~~~~l~~g~ 123 (212)
+....+++|..+-..--. ...+++|++|.+.+..+++ ...+++|+
T Consensus 59 ~~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~-~~~l~~Gd 104 (133)
T 1o4t_A 59 FARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDNGK-DVPIKAGD 104 (133)
T ss_dssp EEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEETTE-EEEEETTE
T ss_pred EEEEEECCCCccCceECCCccEEEEEEeCEEEEEECCE-EEEeCCCc
Confidence 345677888765322222 2579999999999988653 33444443
No 121
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=66.00 E-value=36 Score=26.34 Aligned_cols=44 Identities=16% Similarity=0.080 Sum_probs=31.4
Q ss_pred ceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 78 MHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
+...++++|...-..- ++.+++|++|++.+..+++ ...|++||+
T Consensus 52 ~~~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~~~~-~~~l~~Gd~ 95 (246)
T 1sfn_A 52 QFTAEMPAGAQATESV--YQRFAFVLSGEVDVAVGGE-TRTLREYDY 95 (246)
T ss_dssp EEEEEECTTCEEECCS--SEEEEEEEEEEEEEECSSC-EEEECTTEE
T ss_pred EEEEEECCCCcCCCCc--eeEEEEEEECEEEEEECCE-EEEECCCCE
Confidence 3567788887665442 6779999999999988664 345666653
No 122
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=65.73 E-value=8.4 Score=27.95 Aligned_cols=45 Identities=16% Similarity=0.145 Sum_probs=31.3
Q ss_pred eEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 79 HQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 79 ~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
....+++|..+-..-.....+++|++|.+.+..+++ ...+++|++
T Consensus 47 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v~g~-~~~l~~Gd~ 91 (156)
T 3kgz_A 47 RYFEVDEGGYSTLERHAHVHAVMIHRGHGQCLVGET-ISDVAQGDL 91 (156)
T ss_dssp EEEEEEEEEECCCBBCSSCEEEEEEEEEEEEEETTE-EEEEETTCE
T ss_pred EEEEECCCCccCceeCCCcEEEEEEeCEEEEEECCE-EEEeCCCCE
Confidence 344566666553333345678999999999999775 566788865
No 123
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=65.23 E-value=14 Score=28.62 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=33.7
Q ss_pred eEEEecC-CCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 79 HQAEYKA-DSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 79 ~~~~~~~-g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
....+++ |..+-..--....+++|++|.+.+..+++. ..+++||+
T Consensus 148 ~~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~-~~l~~Gd~ 193 (243)
T 3h7j_A 148 MLAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTVEGCT-VEMKFGTA 193 (243)
T ss_dssp EEEEECTTTEEEEEECCSSEEEEEECSSCEEEEETTEE-EEECTTCE
T ss_pred EEEEECCCCCcCCCEeCCCcEEEEEEECEEEEEECCEE-EEECCCCE
Confidence 3556888 877654444456799999999999998754 45888875
No 124
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=64.94 E-value=7.2 Score=28.90 Aligned_cols=47 Identities=15% Similarity=0.197 Sum_probs=34.6
Q ss_pred ceEEEecCCCeEEccCCCCCeeEEEecCEEEEEEC---CEEEEEeCCCCc
Q psy1917 78 MHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKD---GKILAVMGPGKA 124 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~---~~~~~~l~~g~~ 124 (212)
+....+++|......-..++.+++|++|++.+... +.....+++||+
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~~~~l~~GDv 92 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDA 92 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcEEEEECCCCE
Confidence 56677888877655434457899999999988763 346778888875
No 125
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=64.65 E-value=10 Score=25.81 Aligned_cols=45 Identities=13% Similarity=0.165 Sum_probs=28.7
Q ss_pred ceEEEecCCCeEE--ccCCCCCeeEEEecCEEEEEECCEEEEEeCCCC
Q psy1917 78 MHQAEYKADSYVI--TEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGK 123 (212)
Q Consensus 78 ~~~~~~~~g~~I~--~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~ 123 (212)
+....+++|..+- +.-+....+|+|++|.+.+..+++ ...+++|+
T Consensus 28 ~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~~~-~~~l~~Gd 74 (125)
T 3cew_A 28 VSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITIDGE-KIELQAGD 74 (125)
T ss_dssp EEEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEETTE-EEEEETTE
T ss_pred EEEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEECCE-EEEeCCCC
Confidence 3456677777552 333333457779999999988764 34556664
No 126
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=64.24 E-value=16 Score=28.26 Aligned_cols=47 Identities=9% Similarity=0.001 Sum_probs=35.8
Q ss_pred hceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 77 SMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 77 ~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
.+....+++|..+-..--+...+++|++|.+.+..+++ ...+++|++
T Consensus 35 ~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~~~~-~~~l~~Gd~ 81 (243)
T 3h7j_A 35 EVLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTVGDV-TRKMTALES 81 (243)
T ss_dssp EEEEEEECTTEEEEEECCSSEEEEEEEESEEEEEETTE-EEEEETTTC
T ss_pred EEEEEEECCCCccCCEECCCcEEEEEEEeEEEEEECCE-EEEECCCCE
Confidence 34556688998876555556789999999999999764 567888874
No 127
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=63.96 E-value=6.4 Score=29.18 Aligned_cols=44 Identities=11% Similarity=-0.009 Sum_probs=29.5
Q ss_pred EEEecC-CCe-EEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 80 QAEYKA-DSY-VITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 80 ~~~~~~-g~~-I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
...+++ |.. =-+.-..+..+++|++|.+.+..+++ ...|++|++
T Consensus 92 ~v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl~g~-~~~L~~Gds 137 (166)
T 2vpv_A 92 ILKLPAISGQKKLSNSFRTYITFHVIQGIVEVTVCKN-KFLSVKGST 137 (166)
T ss_dssp EEEECSSGGGCEEEECCSEEEEEEEEESEEEEEETTE-EEEEETTCE
T ss_pred EEEECCCCCCCCCccCCCceEEEEEEEeEEEEEECCE-EEEEcCCCE
Confidence 456777 531 11122344579999999999999774 557888875
No 128
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=63.75 E-value=12 Score=31.72 Aligned_cols=45 Identities=13% Similarity=0.073 Sum_probs=31.6
Q ss_pred ceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCC
Q psy1917 78 MHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGK 123 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~ 123 (212)
+....+++|...-..-...+.+|+|++|...+..++ ....+++||
T Consensus 296 ~~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V~g-e~~~~~~GD 340 (394)
T 3bu7_A 296 ASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIVGG-KRFDWSEHD 340 (394)
T ss_dssp EEEEEECTTCBCCCEEESSCEEEEEEECCEEEEETT-EEEEECTTC
T ss_pred EEEEEECCCCcCCCcccCCcEEEEEEeCeEEEEECC-EEEEEeCCC
Confidence 367778888887665556678999999998777765 334445554
No 129
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=62.66 E-value=6.6 Score=26.58 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=24.1
Q ss_pred CCCCeeEEEecCEEEEEECCEEE-EEeCCCCc
Q psy1917 94 EAGNDLFVSAEGEFQVIKDGKIL-AVMGPGKA 124 (212)
Q Consensus 94 d~~~~~yiI~~G~v~v~~~~~~~-~~l~~g~~ 124 (212)
...+.+++|++|.+.+..+++.. ..|++||+
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~~~~~l~~Gd~ 82 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDTAPRVMRPGDW 82 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCSSCEEECTTEE
T ss_pred CCccEEEEEEeCeEEEEECCEEEEEEECCCCE
Confidence 34568999999999999977542 67888865
No 130
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=61.03 E-value=12 Score=26.99 Aligned_cols=47 Identities=4% Similarity=0.007 Sum_probs=32.1
Q ss_pred ceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCE--------EEEEeCCCCc
Q psy1917 78 MHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGK--------ILAVMGPGKA 124 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~--------~~~~l~~g~~ 124 (212)
+....+++|..+-..-.....+++|++|.+.+..++. ....+++|++
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~ 97 (163)
T 1lr5_A 43 VWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTT 97 (163)
T ss_dssp EEEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEE
T ss_pred EEEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCE
Confidence 3456677777552222234569999999999998761 5667888864
No 131
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=60.70 E-value=10 Score=27.61 Aligned_cols=29 Identities=17% Similarity=0.355 Sum_probs=20.7
Q ss_pred CCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 95 AGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 95 ~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
..+.+++|++|++.+..+++ ...+++||+
T Consensus 83 ~~eE~~yVLeG~~~l~i~g~-~~~l~~GD~ 111 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIIIDGR-KVSASSGEL 111 (151)
T ss_dssp SSEEEEEEEEEEEEEEETTE-EEEEETTCE
T ss_pred CCcEEEEEEEeEEEEEECCE-EEEEcCCCE
Confidence 35578889999999988663 455666654
No 132
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=60.30 E-value=13 Score=24.20 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=30.3
Q ss_pred ceEEEecCCCeEEccCCCC-Cee-EEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 78 MHQAEYKADSYVITEGEAG-NDL-FVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~~-~~~-yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
+....+++|..+-..-... ..+ ++|++|.+.+..++.....+++|++
T Consensus 35 ~~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~~~~~~l~~Gd~ 83 (110)
T 2q30_A 35 IVSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDGDAVIPAPRGAV 83 (110)
T ss_dssp EEEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGGGCEEEECTTEE
T ss_pred EEEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCCCEEEEECCCCE
Confidence 3455678888764332222 355 7999999999876224556777754
No 133
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=59.90 E-value=22 Score=29.12 Aligned_cols=48 Identities=10% Similarity=0.120 Sum_probs=35.5
Q ss_pred ceEEEecCCCeEEccCCC-CCeeEEEecCEEEEEE---CCE-EEEEeCCCCcc
Q psy1917 78 MHQAEYKADSYVITEGEA-GNDLFVSAEGEFQVIK---DGK-ILAVMGPGKAF 125 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~-~~~~yiI~~G~v~v~~---~~~-~~~~l~~g~~f 125 (212)
+....+++|..+-..-.. ...+++|++|.+.+.. +++ ....+++||+|
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~l~~GD~~ 288 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQGDVG 288 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCEEEEEECTTCEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcEEEEEECCCCEE
Confidence 467788888876433233 3789999999999987 564 47789999863
No 134
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=59.58 E-value=22 Score=28.12 Aligned_cols=46 Identities=13% Similarity=0.033 Sum_probs=31.3
Q ss_pred ceEEEecCCCeEEc-cCCCCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 78 MHQAEYKADSYVIT-EGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 78 ~~~~~~~~g~~I~~-~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
+....+++|..+-. .--....+++|++|.+.+..+++ ...+++||+
T Consensus 184 ~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i~~~-~~~l~~GD~ 230 (274)
T 1sef_A 184 MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNE-WYPVEKGDY 230 (274)
T ss_dssp EEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEETTE-EEEEETTCE
T ss_pred EEEEEECCCCccCcceeccCeEEEEEEeCEEEEEECCE-EEEECCCCE
Confidence 45667888887633 33345688999999999988763 345555543
No 135
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=59.33 E-value=11 Score=25.74 Aligned_cols=45 Identities=9% Similarity=0.085 Sum_probs=29.6
Q ss_pred eEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 79 HQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 79 ~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
....+++|..+-..-.....+++|++|.+.+..+++ ...+++|++
T Consensus 51 ~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~~-~~~l~~Gd~ 95 (126)
T 1vj2_A 51 RLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQG-EETVEEGFY 95 (126)
T ss_dssp EEEEEEEEEEEEEECCSSCEEEEEEESEEEEECSSC-EEEEETTEE
T ss_pred EEEEECCCCcCCceeCCCcEEEEEEEeEEEEEECCE-EEEECCCCE
Confidence 445566666553333336689999999999988664 345666653
No 136
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=59.30 E-value=58 Score=27.22 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=24.8
Q ss_pred eEEEecCCCeEEccCCCCCeeEEEecCEEEEEECC
Q psy1917 79 HQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDG 113 (212)
Q Consensus 79 ~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~ 113 (212)
....+++|+..-..-.....+|.|.+|.-.+.+++
T Consensus 282 ~~~~L~pG~~t~~hRht~s~Vy~V~eG~G~~~I~~ 316 (368)
T 3nw4_A 282 EFHRLRAGTETATRNEVGSTVFQVFEGAGAVVMNG 316 (368)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEESCEEEEETT
T ss_pred heEEECCCCccCCeeccccEEEEEEeCcEEEEECC
Confidence 45666777666555555668899999988877754
No 137
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=56.64 E-value=9.4 Score=31.60 Aligned_cols=40 Identities=23% Similarity=0.146 Sum_probs=33.2
Q ss_pred CCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcc
Q psy1917 86 DSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAF 125 (212)
Q Consensus 86 g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~f 125 (212)
|+.+-+.-.+.+.+++|++|.+.+..+++....+++|+++
T Consensus 262 g~~~~~h~~~~~~~~~vleG~~~i~i~g~~~~~l~~Gd~~ 301 (350)
T 1juh_A 262 TVTVPTWSFPGACAFQVQEGRVVVQIGDYAATELGSGDVA 301 (350)
T ss_dssp TSCCCCBCCSSCEEEEEEESCEEEEETTSCCEEECTTCEE
T ss_pred CCCCCcccCCCcEEEEEEeeEEEEEECCeEEEEeCCCCEE
Confidence 5667666778889999999999999998557789999863
No 138
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=55.38 E-value=31 Score=27.66 Aligned_cols=44 Identities=9% Similarity=0.086 Sum_probs=29.9
Q ss_pred eEEEecCCCeEE-ccCCCCCeeEEEecCEEEEEECCEEEEEeCCCC
Q psy1917 79 HQAEYKADSYVI-TEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGK 123 (212)
Q Consensus 79 ~~~~~~~g~~I~-~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~ 123 (212)
....+++|...- +.-+..+.+++|++|.+.+..+++ ...+++||
T Consensus 49 ~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~-~~~l~~Gd 93 (337)
T 1y3t_A 49 VLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTLDGE-RYLLISGD 93 (337)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESCEEEEETTE-EEEECTTC
T ss_pred EEEEeCCCCCCCceeCCCceEEEEEEECEEEEEECCE-EEEECCCC
Confidence 455678887663 333337789999999999998654 24455554
No 139
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=54.72 E-value=21 Score=28.41 Aligned_cols=48 Identities=8% Similarity=0.016 Sum_probs=36.6
Q ss_pred hhceEEEecCCCeEEc-cCCCCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 76 ESMHQAEYKADSYVIT-EGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 76 ~~~~~~~~~~g~~I~~-~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
-.+....+++|..|-. +-......|+|++|+..+..++ ....+++||+
T Consensus 191 ~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~~~-~~~~v~~GD~ 239 (278)
T 1sq4_A 191 MHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRLNQ-DWVEVEAGDF 239 (278)
T ss_dssp EEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEETT-EEEEEETTCE
T ss_pred eEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEECC-EEEEeCCCCE
Confidence 3467889999999864 4443447899999999988865 5677888875
No 140
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=54.18 E-value=8.2 Score=28.86 Aligned_cols=47 Identities=17% Similarity=0.335 Sum_probs=31.4
Q ss_pred eEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 88 YVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 88 ~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
+++.+|.-. +|.-.+|.-. .+..+++|++||| ++.++++|.+++..+
T Consensus 49 y~i~~G~v~--~~~~~~G~~~------~~~~~~~G~~~G~-------~~~~~~~A~~~~~v~ 95 (220)
T 2fmy_A 49 FLVKSGRVR--VYLAYEDKEF------TLAILEAGDIFCT-------HTRAFIQAMEDTTIL 95 (220)
T ss_dssp EEEEESEEE--EEEECSSCEE------EEEEEETTCEEES-------CSSSEEEESSSEEEE
T ss_pred EEEEecEEE--EEECCCCCEE------EEEEcCCCCEeCC-------ccceEEEEcCcEEEE
Confidence 455566532 2444456432 3456789999999 889999998877653
No 141
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=53.58 E-value=6.9 Score=31.33 Aligned_cols=48 Identities=15% Similarity=-0.000 Sum_probs=33.3
Q ss_pred ceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcc
Q psy1917 78 MHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAF 125 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~f 125 (212)
+...++++|..--.....+..+.+|++|++.+..++.....|++|+++
T Consensus 72 ~~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~~g~~~~L~~Gds~ 119 (266)
T 4e2q_A 72 MYLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTSSSSKKLTVDSYA 119 (266)
T ss_dssp EEEEEECSSEECCCCCTTEEEEEEEEEECEEEEC--CCCEEECTTEEE
T ss_pred EEEEEECcCCcCCCCCCCCeEEEEEEEEEEEEEECCCcEEEEcCCCEE
Confidence 467788888764223344568999999999999872345678888765
No 142
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=53.33 E-value=16 Score=26.21 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=25.6
Q ss_pred EccCCCCCeeEEEecCEEEEEECC-------EEEEEeCCCCc
Q psy1917 90 ITEGEAGNDLFVSAEGEFQVIKDG-------KILAVMGPGKA 124 (212)
Q Consensus 90 ~~~Gd~~~~~yiI~~G~v~v~~~~-------~~~~~l~~g~~ 124 (212)
++.-+..|.+|+|++|.+.+...+ .....+++|+.
T Consensus 44 ~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~ 85 (140)
T 3d0j_A 44 LEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKV 85 (140)
T ss_dssp EEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCC
T ss_pred hccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCE
Confidence 455666789999999999987642 23566777763
No 143
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=53.17 E-value=8.8 Score=29.21 Aligned_cols=31 Identities=10% Similarity=-0.080 Sum_probs=21.8
Q ss_pred EEEeCCCCcchhhhhhhCCCc--ceEEEEE-eeee
Q psy1917 116 LAVMGPGKAFGELAILYNCTR--TASIRGF-LTVL 147 (212)
Q Consensus 116 ~~~l~~g~~fGe~~ll~~~~r--~a~v~a~-~~~~ 147 (212)
+..+ +|++|||++++.+.++ ..++.|. .++.
T Consensus 61 ~~~~-~G~~~Ge~~~~~~~~~~~~~~~~a~~~~~~ 94 (238)
T 2bgc_A 61 LQYY-KGAFVIMSGFIDTETSVGYYNLEVISEQAT 94 (238)
T ss_dssp EEEE-ESSEEEESBCTTTCCBSCCCEEEECSSEEE
T ss_pred EEEc-CCCEecchhhhcCCCcCcceeEEEEEcceE
Confidence 4456 8999999999999864 4455554 2443
No 144
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=52.35 E-value=12 Score=31.75 Aligned_cols=45 Identities=22% Similarity=0.155 Sum_probs=32.2
Q ss_pred eEEEecCCCeEEccCCCCCeeEEEecCEEEE-EECCEEEEEeCCCCc
Q psy1917 79 HQAEYKADSYVITEGEAGNDLFVSAEGEFQV-IKDGKILAVMGPGKA 124 (212)
Q Consensus 79 ~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v-~~~~~~~~~l~~g~~ 124 (212)
....+++|+.+-..-.....+|+|++|.-.. ..+++ ...+++||+
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v~G~-~~~~~~GD~ 171 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVDGH-KVELGANDF 171 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEEETTE-EEEECTTCE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEEECCE-EEEEcCCCE
Confidence 6888999998866655666899999999755 55553 345555553
No 145
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=52.21 E-value=51 Score=25.60 Aligned_cols=45 Identities=13% Similarity=0.149 Sum_probs=30.7
Q ss_pred eEEEecCCCeEEcc--CCCCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 79 HQAEYKADSYVITE--GEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 79 ~~~~~~~g~~I~~~--Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
...++++|...-.. ....+.+++|++|++.+..+++ ...|++||+
T Consensus 62 ~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~~~~-~~~L~~Gd~ 108 (261)
T 1rc6_A 62 YLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGK-TFALSEGGY 108 (261)
T ss_dssp EEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEETTE-EEEEETTEE
T ss_pred EEEEEcCCCccCCCCCCCCceEEEEEEEeEEEEEECCE-EEEECCCCE
Confidence 45667777654322 1224568999999999998764 567777764
No 146
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=51.81 E-value=80 Score=25.96 Aligned_cols=35 Identities=14% Similarity=0.052 Sum_probs=22.8
Q ss_pred eEEEecCCCeEEccCCCCCeeEEEecCEEEEEECC
Q psy1917 79 HQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDG 113 (212)
Q Consensus 79 ~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~ 113 (212)
....+++|...-..-.....+|+|++|...+.+++
T Consensus 271 ~~~~l~pG~~~~~H~h~~~ev~~v~~G~g~~~v~~ 305 (354)
T 2d40_A 271 FLQLLPKGFASRVARTTDSTIYHVVEGSGQVIIGN 305 (354)
T ss_dssp EEEEECTTCBCCCBEESSCEEEEEEEEEEEEEETT
T ss_pred EEEEECCCCCCCceecCCcEEEEEEeCeEEEEECC
Confidence 35566666655443344557888888888887754
No 147
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=50.23 E-value=16 Score=29.09 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=32.3
Q ss_pred ceEEEecCCCeEE--ccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 78 MHQAEYKADSYVI--TEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 78 ~~~~~~~~g~~I~--~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
+....+++|...- ......+.+++|++|++.+..+++ ...|++||+
T Consensus 70 ~~~~~l~PG~~~~~~~h~H~~eE~~~Vl~G~l~v~v~g~-~~~L~~GD~ 117 (278)
T 1sq4_A 70 QYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQGQ-VHAMQPGGY 117 (278)
T ss_dssp EEEEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEESSC-EEEECTTEE
T ss_pred EEEEEECCCCccCCCCcCCCceEEEEEEeCEEEEEECCE-EEEECCCCE
Confidence 3466677777651 122335679999999999999775 467888875
No 148
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=48.81 E-value=33 Score=28.00 Aligned_cols=46 Identities=13% Similarity=0.063 Sum_probs=29.9
Q ss_pred ceEEEecCCCeEEc-cCCCCCeeEEEecCEEEEEE---CCE-EEEEeCCCC
Q psy1917 78 MHQAEYKADSYVIT-EGEAGNDLFVSAEGEFQVIK---DGK-ILAVMGPGK 123 (212)
Q Consensus 78 ~~~~~~~~g~~I~~-~Gd~~~~~yiI~~G~v~v~~---~~~-~~~~l~~g~ 123 (212)
+....+.+|...-- --...+.+++|++|++.+.. +++ ....+++||
T Consensus 54 ~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~~~~l~~GD 104 (361)
T 2vqa_A 54 GVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGG 104 (361)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEEEEEEETTE
T ss_pred eEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEEEEEEcCCC
Confidence 45666777876532 23336789999999998887 442 445566664
No 149
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=48.80 E-value=20 Score=24.59 Aligned_cols=28 Identities=14% Similarity=0.132 Sum_probs=23.0
Q ss_pred CeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 97 NDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 97 ~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
..+++|++|.+.+..++.....+++|++
T Consensus 65 ~E~~~vl~G~~~~~~~~~~~~~l~~Gd~ 92 (134)
T 2o8q_A 65 FQLFYVLRGWVEFEYEDIGAVMLEAGGS 92 (134)
T ss_dssp CEEEEEEESEEEEEETTTEEEEEETTCE
T ss_pred cEEEEEEeCEEEEEECCcEEEEecCCCE
Confidence 6799999999999987735667888875
No 150
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=47.13 E-value=23 Score=30.17 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=36.9
Q ss_pred hceEEEecCCCeEEccCCCCCeeEEEecCEEEEEE---CCEEEEEeCCCCcc
Q psy1917 77 SMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIK---DGKILAVMGPGKAF 125 (212)
Q Consensus 77 ~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~---~~~~~~~l~~g~~f 125 (212)
.+....+++|..+...-...+.+++|++|...+.. ++.....+++||++
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~ 101 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQ 101 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEEEEEECTTEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCeEEEecCCCEE
Confidence 45688889988776555556789999999999875 24567788888753
No 151
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=47.02 E-value=28 Score=24.47 Aligned_cols=47 Identities=9% Similarity=-0.102 Sum_probs=31.5
Q ss_pred ceEEEecCCCeEEc-cCCCCCeeEEEecCEEEEEECCEE-----EEEeCCCCc
Q psy1917 78 MHQAEYKADSYVIT-EGEAGNDLFVSAEGEFQVIKDGKI-----LAVMGPGKA 124 (212)
Q Consensus 78 ~~~~~~~~g~~I~~-~Gd~~~~~yiI~~G~v~v~~~~~~-----~~~l~~g~~ 124 (212)
+....+++|..+-. .-...+.+++|++|.+.+..+++. ...+++|++
T Consensus 45 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~ 97 (148)
T 2oa2_A 45 VTLMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYA 97 (148)
T ss_dssp EEEEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCE
T ss_pred EEEEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCE
Confidence 34557788776532 223345799999999999886643 266777764
No 152
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=46.80 E-value=40 Score=25.26 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=26.3
Q ss_pred hceEEEecCCCeEEccCCCCCeeEEEecCEEE
Q psy1917 77 SMHQAEYKADSYVITEGEAGNDLFVSAEGEFQ 108 (212)
Q Consensus 77 ~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~ 108 (212)
.+...++++|..+-.....+..+++|++|.+.
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~ 157 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR 157 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE
Confidence 45688889999988887788889999999855
No 153
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=45.26 E-value=36 Score=25.32 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=27.5
Q ss_pred eEEccCCCCCeeEEEecCEEEEEEC--C-EEEEEeCCCCcc
Q psy1917 88 YVITEGEAGNDLFVSAEGEFQVIKD--G-KILAVMGPGKAF 125 (212)
Q Consensus 88 ~I~~~Gd~~~~~yiI~~G~v~v~~~--~-~~~~~l~~g~~f 125 (212)
..++ -++.+.+|++++|.+.+... + .....+++||.|
T Consensus 48 ~d~H-~h~~dE~FyvlkG~m~i~v~d~g~~~~v~l~eGE~f 87 (174)
T 1yfu_A 48 TDYH-DDPLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIF 87 (174)
T ss_dssp CCEE-ECSSCEEEEEEESCEEEEEEETTEEEEEEECTTCEE
T ss_pred ccCc-CCCCceEEEEEeeEEEEEEEcCCceeeEEECCCCEE
Confidence 5666 33678999999999988763 3 356778888765
No 154
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}
Probab=45.16 E-value=71 Score=25.50 Aligned_cols=71 Identities=10% Similarity=0.069 Sum_probs=52.7
Q ss_pred hhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEe-CCCCcchhh--hhhhCCCc-ceEEEEEeee
Q psy1917 76 ESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVM-GPGKAFGEL--AILYNCTR-TASIRGFLTV 146 (212)
Q Consensus 76 ~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l-~~g~~fGe~--~ll~~~~r-~a~v~a~~~~ 146 (212)
..+...+.++|+.+-.+-+.-+...+++.|.+.|..+++....+ ++.++|.+. ..+|=.+. ..++.|.+++
T Consensus 29 ~~f~~~~L~~Ge~~~~~~~~~E~~iv~l~G~~~V~~~g~~~~~~g~R~svF~~~~p~~lYvp~g~~v~i~a~~~~ 103 (270)
T 2qjv_A 29 VGFDVWQLXAGESITLPSDERERCLVLVAGLASVXAADSFFYRIGQRMSPFERIPAYSVYLPHHTEAXVTAETDL 103 (270)
T ss_dssp CEEEEEEECTTCEEEECCSSEEEEEEEEESCEEEEETTEEEEEECCCSSGGGCSCCCEEEECSSCCEEEEESSSE
T ss_pred eEEEEEEecCCCEEEecCCCcEEEEEEecceEEEEECCEEEeccccccccccCCCCcEEEECCCCEEEEEecCCc
Confidence 34678889999998877776778999999999999999877664 577888876 34443333 5677775543
No 155
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES; 1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A 2l3t_A 3gxw_A 3gxx_A
Probab=45.01 E-value=27 Score=26.58 Aligned_cols=36 Identities=14% Similarity=0.406 Sum_probs=30.8
Q ss_pred hhcCccCCCCCHHHHHHHHhhceEEEecCCCeEEccCCCCC
Q psy1917 57 IMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGN 97 (212)
Q Consensus 57 l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~ 97 (212)
+-++|+|++++-.+..+.++.. +.|++|+|+...+.
T Consensus 5 vI~HP~F~n~~~~qAe~~L~~~-----~~Ge~iIRPSSkg~ 40 (197)
T 3or8_A 5 VINHPYYFPFNGKQAEDYLRSK-----ERGDFVIRQSSRGD 40 (197)
T ss_dssp CCCCTTEECCCHHHHHHHHTTS-----CTTCEEEEECSSCT
T ss_pred ccCCCCcCCCCHHHHHHHHhcC-----CCCCEEEeeCCCCC
Confidence 4579999999999999988763 78999999988864
No 156
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=44.07 E-value=40 Score=27.84 Aligned_cols=47 Identities=6% Similarity=-0.053 Sum_probs=33.8
Q ss_pred ceEEEecCCCeEEccCCCC-CeeEEEecCEEEEEEC---C-EEEEEeCCCCc
Q psy1917 78 MHQAEYKADSYVITEGEAG-NDLFVSAEGEFQVIKD---G-KILAVMGPGKA 124 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~~-~~~yiI~~G~v~v~~~---~-~~~~~l~~g~~ 124 (212)
+....+++|...-..-... +.+++|++|++.+... + .....+++||+
T Consensus 259 ~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~ 310 (385)
T 1j58_A 259 SALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDV 310 (385)
T ss_dssp EEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCE
T ss_pred EEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEEEEEEcCCCE
Confidence 4566788888764333334 7899999999998763 3 36778888876
No 157
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=43.44 E-value=20 Score=29.69 Aligned_cols=46 Identities=15% Similarity=0.073 Sum_probs=32.1
Q ss_pred ceEEEecCCCeEEccCCCCCeeEEEecCEEEE-EECCEEEEEeCCCCc
Q psy1917 78 MHQAEYKADSYVITEGEAGNDLFVSAEGEFQV-IKDGKILAVMGPGKA 124 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v-~~~~~~~~~l~~g~~ 124 (212)
+....+++|...-..-.....+++|++|...+ ..+++ ...+++||+
T Consensus 102 ~~~~~l~PG~~~~~H~H~~~e~~yVl~G~g~~t~v~g~-~~~l~~GD~ 148 (354)
T 2d40_A 102 AGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVDGE-RTPMNEGDF 148 (354)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEECSSCEEEETTE-EEECCTTCE
T ss_pred EEEEEECCCCCcCCeecCcceEEEEEEEEEEEEEECCE-EEEEcCCCE
Confidence 45778889988743333466899999999877 56553 455666664
No 158
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=43.40 E-value=31 Score=26.94 Aligned_cols=45 Identities=13% Similarity=0.011 Sum_probs=29.6
Q ss_pred ceEEEecCCCeEEc-cCCCCCeeEEEecCEEEEEECCEEEEEeCCCC
Q psy1917 78 MHQAEYKADSYVIT-EGEAGNDLFVSAEGEFQVIKDGKILAVMGPGK 123 (212)
Q Consensus 78 ~~~~~~~~g~~I~~-~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~ 123 (212)
+....+++|..+-. .-.....+++|++|++.+..+++ ...+++||
T Consensus 181 ~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~-~~~l~~GD 226 (261)
T 1rc6_A 181 MHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNN-WIPVKKGD 226 (261)
T ss_dssp EEEEEECTTCCBEEEEEESSCEEEEEEESEEEEESSSC-EEEEETTC
T ss_pred EEEEEECCCCccCcccCCCceEEEEEEEeEEEEEECCE-EEEeCCCC
Confidence 46778888876532 22234679999999999887652 33455554
No 159
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=42.81 E-value=19 Score=24.88 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=27.4
Q ss_pred EEEecCCCeEEccCCCCCeeEEEecCEEEEE--ECCEEEEEeCCCCc
Q psy1917 80 QAEYKADSYVITEGEAGNDLFVSAEGEFQVI--KDGKILAVMGPGKA 124 (212)
Q Consensus 80 ~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~--~~~~~~~~l~~g~~ 124 (212)
...+++|..+-..-.....+++|++|.+.+. .++ ....+++|++
T Consensus 43 ~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~-~~~~l~~Gd~ 88 (145)
T 3ht1_A 43 EFEVSPNGSTPPHFHEWEHEIYVLEGSMGLVLPDQG-RTEEVGPGEA 88 (145)
T ss_dssp EEEEEEEEECCCEECSSCEEEEEEEECEEEEEGGGT-EEEEECTTCE
T ss_pred EEEECCCCcCCCccCCCceEEEEEEeEEEEEEeECC-EEEEECCCCE
Confidence 3445555543222222345567999999998 665 5677888875
No 160
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=42.75 E-value=57 Score=24.29 Aligned_cols=48 Identities=17% Similarity=0.193 Sum_probs=33.2
Q ss_pred hceEEEecCCCeEEcc-CCCCCeeEEEecCEEEEEEC------CE-EEEEeCCCCc
Q psy1917 77 SMHQAEYKADSYVITE-GEAGNDLFVSAEGEFQVIKD------GK-ILAVMGPGKA 124 (212)
Q Consensus 77 ~~~~~~~~~g~~I~~~-Gd~~~~~yiI~~G~v~v~~~------~~-~~~~l~~g~~ 124 (212)
.+....+.+|..+-.. -...+.+++|++|.+.+... ++ ....+++|++
T Consensus 73 ~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~ 128 (201)
T 1fi2_A 73 SMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGET 128 (201)
T ss_dssp EEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCE
T ss_pred EEEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCE
Confidence 3456788888866433 33357899999999998663 22 2677888875
No 161
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=42.65 E-value=27 Score=30.02 Aligned_cols=50 Identities=16% Similarity=0.223 Sum_probs=36.5
Q ss_pred hhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEE---CCEEEEEeCCCCcc
Q psy1917 76 ESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIK---DGKILAVMGPGKAF 125 (212)
Q Consensus 76 ~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~---~~~~~~~l~~g~~f 125 (212)
-.+....+++|..+-..-..++.+++|++|.+.+.. ++.....+++||++
T Consensus 86 ~s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~ 138 (445)
T 2cav_A 86 YRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAI 138 (445)
T ss_dssp EEEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEE
T ss_pred EEEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCEEEEecCCCEE
Confidence 345677889988776555556789999999988764 23467778888753
No 162
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=42.26 E-value=36 Score=28.09 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=31.3
Q ss_pred ceEEEecCCCeEEccCCCCCeeEEEecCEEEEEE---CCEE-EEEeCCCCc
Q psy1917 78 MHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIK---DGKI-LAVMGPGKA 124 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~---~~~~-~~~l~~g~~ 124 (212)
+....+.+|..+-..-.....+++|++|.+.+.. +++. ...+++||+
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~~~~l~~GD~ 131 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDL 131 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEEEEEeCCCCE
Confidence 4567778888664333336789999999999887 4442 346666653
No 163
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=41.29 E-value=26 Score=27.43 Aligned_cols=29 Identities=14% Similarity=0.212 Sum_probs=23.7
Q ss_pred CeeEEEecCEEEEEECCEEEEEeCCCCcc
Q psy1917 97 NDLFVSAEGEFQVIKDGKILAVMGPGKAF 125 (212)
Q Consensus 97 ~~~yiI~~G~v~v~~~~~~~~~l~~g~~f 125 (212)
+.+..|++|.+.+..++.....+++||.|
T Consensus 187 ~E~~~ILeG~v~lt~~~G~~~~~~aGD~~ 215 (238)
T 3myx_A 187 HELMNLIEGRVVLSLENGSSLTVNTGDTV 215 (238)
T ss_dssp CEEEEEEECCEEEEETTSCEEEECTTCEE
T ss_pred CEEEEEEEeEEEEEeCCCCEEEECCCCEE
Confidence 46888899999999876667889999864
No 164
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=41.20 E-value=55 Score=26.00 Aligned_cols=49 Identities=10% Similarity=0.125 Sum_probs=37.0
Q ss_pred HhhceEEEecCCCeE-EccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 75 VESMHQAEYKADSYV-ITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 75 ~~~~~~~~~~~g~~I-~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
...+....+++|..| +.+-.....-++|++|+..+..++ .+..+++||+
T Consensus 185 d~~~~~~t~~PG~~~p~~e~H~~eh~~~vL~G~g~y~l~~-~~~~V~~GD~ 234 (266)
T 4e2q_A 185 DFNIHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGD-NWYPVQAGDV 234 (266)
T ss_dssp SEEEEEEEECTTCBCSSCCCCSCCEEEEEEECEEEEEETT-EEEEEETTCE
T ss_pred ceEEEEEEECCCcCcCCceEcccceEEEEEeceEEEEECC-EEEEecCCCE
Confidence 445678889999998 345556668999999998887765 4667777764
No 165
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=41.06 E-value=20 Score=26.76 Aligned_cols=47 Identities=13% Similarity=0.170 Sum_probs=32.2
Q ss_pred eEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCCcchhhhhhhCCCcceEEEEEeeeeee
Q psy1917 88 YVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHF 149 (212)
Q Consensus 88 ~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~fGe~~ll~~~~r~a~v~a~~~~~~~ 149 (212)
+++..|.-. +|.-.+|.-. .+..+++|++|| .++.++++|.+++..+
T Consensus 45 y~i~~G~v~--~~~~~~G~~~------~~~~~~~G~~fG-------~~~~~~~~A~~~~~v~ 91 (222)
T 1ft9_A 45 FVVVDGRLR--VYLVGEEREI------SLFYLTSGDMFC-------MHSGCLVEATERTEVR 91 (222)
T ss_dssp EEEEESEEE--EEEEETTEEE------EEEEEETTCEEE-------SCSSCEEEESSCEEEE
T ss_pred EEEEecEEE--EEECCCCCEE------EEEEcCCCCEec-------CCCCEEEEEccceEEE
Confidence 456666642 2444566533 345678999999 7889999998877653
No 166
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=40.16 E-value=69 Score=25.09 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=30.1
Q ss_pred eEEEecCCCeEEcc-C-CCCCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 79 HQAEYKADSYVITE-G-EAGNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 79 ~~~~~~~g~~I~~~-G-d~~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
....+++|...-.. . ...+.+++|++|++.+..+++ ...|++||+
T Consensus 65 ~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~~~~-~~~L~~GD~ 111 (274)
T 1sef_A 65 YIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQE-THELEAGGY 111 (274)
T ss_dssp EEEEEEEEEEECSCSSBTTEEEEEEEEESEEEEECSSC-EEEEETTEE
T ss_pred EEEEECCCCcCCCCCCCCCceEEEEEEEeEEEEEECCE-EEEECCCCE
Confidence 45667777654322 1 224568999999999988664 456777764
No 167
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=39.34 E-value=10 Score=25.04 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=30.7
Q ss_pred ceEEEecCCCeEEccCCCCC-eeEEEecCEEEEEECCE--EEEEeCCCCc
Q psy1917 78 MHQAEYKADSYVITEGEAGN-DLFVSAEGEFQVIKDGK--ILAVMGPGKA 124 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~~~-~~yiI~~G~v~v~~~~~--~~~~l~~g~~ 124 (212)
.....+++|..+=-+--+.+ ..|+|.+|.+.+...+. ....+++|++
T Consensus 19 V~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~~~~~~l~~G~~ 68 (98)
T 3lag_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRSLAQLKTGRS 68 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEECCCBCTTCC
T ss_pred EEEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCCCceEEEEecCCcE
Confidence 34567889888855544444 57888899999987542 3344667764
No 168
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=39.07 E-value=35 Score=28.54 Aligned_cols=37 Identities=14% Similarity=0.070 Sum_probs=28.6
Q ss_pred ceEEEecCCCeEEccCCCCCeeEEEecCEEE-EEECCE
Q psy1917 78 MHQAEYKADSYVITEGEAGNDLFVSAEGEFQ-VIKDGK 114 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~-v~~~~~ 114 (212)
+....+.+|+.+-..-...+.+|+|++|.-. +..+++
T Consensus 105 a~~~~l~PG~~~~~HrH~~~ev~~VleG~G~~~~vdG~ 142 (368)
T 3nw4_A 105 AAIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVVNGD 142 (368)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEECSSCEEEEEEETTE
T ss_pred EEEEEECCCCccCceecccceEEEEEecceEEEEECCE
Confidence 4577899999886666667799999999975 566654
No 169
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=39.03 E-value=39 Score=25.07 Aligned_cols=47 Identities=11% Similarity=0.085 Sum_probs=31.6
Q ss_pred ceEEEecCCCeE-------EccCC--CCCeeEEEecCEEEEEECCEE----EEEeCCCCc
Q psy1917 78 MHQAEYKADSYV-------ITEGE--AGNDLFVSAEGEFQVIKDGKI----LAVMGPGKA 124 (212)
Q Consensus 78 ~~~~~~~~g~~I-------~~~Gd--~~~~~yiI~~G~v~v~~~~~~----~~~l~~g~~ 124 (212)
+....+++|... .+.-. ....+|+|++|++.+..+++. ...+++||+
T Consensus 69 ~~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~ 128 (190)
T 1x82_A 69 FATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTV 128 (190)
T ss_dssp EEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCE
T ss_pred EEEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEEcCcCCcEEEEEECCCcE
Confidence 345578888762 11111 235899999999999875532 567888875
No 170
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=38.53 E-value=16 Score=27.24 Aligned_cols=37 Identities=11% Similarity=0.133 Sum_probs=25.7
Q ss_pred eEEccCCCCCeeEEEecCEEEEEECC-------EEEEEeCCCCcc
Q psy1917 88 YVITEGEAGNDLFVSAEGEFQVIKDG-------KILAVMGPGKAF 125 (212)
Q Consensus 88 ~I~~~Gd~~~~~yiI~~G~v~v~~~~-------~~~~~l~~g~~f 125 (212)
+.++ -++.+.+|++++|.+.+...+ ..-..+++||.|
T Consensus 47 ~D~H-~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmf 90 (176)
T 1zvf_A 47 TDYH-INPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSY 90 (176)
T ss_dssp SCEE-ECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEE
T ss_pred CcCc-CCCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEE
Confidence 4555 455678999999999887633 145667777654
No 171
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=37.41 E-value=95 Score=27.15 Aligned_cols=53 Identities=9% Similarity=0.112 Sum_probs=35.8
Q ss_pred HHHhhceEEEecCCCeEEccC-CCCCeeEEEecCEEEEEEC---CEEE--EEeCCCCcc
Q psy1917 73 EMVESMHQAEYKADSYVITEG-EAGNDLFVSAEGEFQVIKD---GKIL--AVMGPGKAF 125 (212)
Q Consensus 73 ~l~~~~~~~~~~~g~~I~~~G-d~~~~~yiI~~G~v~v~~~---~~~~--~~l~~g~~f 125 (212)
.+--.+....+++|..+-..= ..++.+++|++|.+.+... ++.+ ..+++||+|
T Consensus 369 ~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~ 427 (510)
T 3c3v_A 369 WLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVL 427 (510)
T ss_dssp HHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred cceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEE
Confidence 344456788889988764443 3367899999999998762 2232 357888753
No 172
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=37.15 E-value=89 Score=27.01 Aligned_cols=48 Identities=8% Similarity=0.162 Sum_probs=33.6
Q ss_pred hceEEEecCCCeEEccCCC-CCeeEEEecCEEEEEECC---EEE--EEeCCCCc
Q psy1917 77 SMHQAEYKADSYVITEGEA-GNDLFVSAEGEFQVIKDG---KIL--AVMGPGKA 124 (212)
Q Consensus 77 ~~~~~~~~~g~~I~~~Gd~-~~~~yiI~~G~v~v~~~~---~~~--~~l~~g~~ 124 (212)
.+....+++|..+-..=.+ ++.+++|++|.+.+...+ +.+ ..+++||+
T Consensus 339 s~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv 392 (476)
T 1fxz_A 339 SAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRV 392 (476)
T ss_dssp CEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCE
T ss_pred eEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCE
Confidence 4578888888876444333 678999999999987632 232 35788875
No 173
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=34.58 E-value=1.3e+02 Score=26.55 Aligned_cols=55 Identities=11% Similarity=0.166 Sum_probs=37.0
Q ss_pred HHHHHhhceEEEecCCCeEEcc-CCCCCeeEEEecCEEEEEE---CCE--EEEEeCCCCcc
Q psy1917 71 VKEMVESMHQAEYKADSYVITE-GEAGNDLFVSAEGEFQVIK---DGK--ILAVMGPGKAF 125 (212)
Q Consensus 71 ~~~l~~~~~~~~~~~g~~I~~~-Gd~~~~~yiI~~G~v~v~~---~~~--~~~~l~~g~~f 125 (212)
+..+--.+....+.+|.++--. .-.++.+++|++|.+.+.. +++ ....|++||+|
T Consensus 389 L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~ 449 (531)
T 3fz3_A 389 LRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLF 449 (531)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred cccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEE
Confidence 3334446778889998887443 3346789999999999876 222 34567777653
No 174
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=33.11 E-value=48 Score=28.34 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=36.5
Q ss_pred hhceEEEecCCCeEEccCCCCCeeEEEecCEEEEEE--C-CEEEEEeCCCCc
Q psy1917 76 ESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIK--D-GKILAVMGPGKA 124 (212)
Q Consensus 76 ~~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~--~-~~~~~~l~~g~~ 124 (212)
-.+....+++|..+-..-..++.+++|++|...+.. + +.....+++||+
T Consensus 61 ~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~~~~l~~GDv 112 (434)
T 2ea7_A 61 YRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRDSYILEQGHA 112 (434)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEE
T ss_pred EEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCEEEEeCCCCE
Confidence 346788899998876665556689999999988765 2 246677777765
No 175
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=33.03 E-value=1.2e+02 Score=26.40 Aligned_cols=53 Identities=9% Similarity=0.058 Sum_probs=34.9
Q ss_pred HHHHhhceEEEecCCCeEEcc-CCCCCeeEEEecCEEEEEECC---EEE--EEeCCCCc
Q psy1917 72 KEMVESMHQAEYKADSYVITE-GEAGNDLFVSAEGEFQVIKDG---KIL--AVMGPGKA 124 (212)
Q Consensus 72 ~~l~~~~~~~~~~~g~~I~~~-Gd~~~~~yiI~~G~v~v~~~~---~~~--~~l~~g~~ 124 (212)
..+-..+....+++|..+--. -..++.+++|++|.+.+...+ +.+ ..+++||+
T Consensus 363 ~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv 421 (493)
T 2d5f_A 363 RQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQL 421 (493)
T ss_dssp HHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCE
T ss_pred cccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCE
Confidence 334345677888888876443 333678999999999987632 222 34677764
No 176
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=31.08 E-value=42 Score=26.27 Aligned_cols=37 Identities=8% Similarity=0.180 Sum_probs=22.6
Q ss_pred CCCeEEccCCCCCeeEEEecCEEEEEECCEEEEEeCCCC
Q psy1917 85 ADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGK 123 (212)
Q Consensus 85 ~g~~I~~~Gd~~~~~yiI~~G~v~v~~~~~~~~~l~~g~ 123 (212)
.|+.... --+.+.+.+|++|++.+...+ ....+++||
T Consensus 55 ~g~~~v~-~~p~dE~~~VleG~~~lt~~g-~~~~~~~Gd 91 (238)
T 3myx_A 55 GTALSVE-AYPYTEMLVMHRGSVTLTSGT-DSVTLSTGE 91 (238)
T ss_dssp CSEEEES-SCSSEEEEEEEESEEEEEETT-EEEEEETTC
T ss_pred ccccccc-cCCCcEEEEEEEeEEEEECCC-eEEEEcCCC
Confidence 4444442 223467889999999997743 444456655
No 177
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=28.50 E-value=50 Score=24.09 Aligned_cols=33 Identities=9% Similarity=0.082 Sum_probs=24.6
Q ss_pred ccCCCCCeeEEEec--CEEEEEECCEEEEEeCCCCc
Q psy1917 91 TEGEAGNDLFVSAE--GEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 91 ~~Gd~~~~~yiI~~--G~v~v~~~~~~~~~l~~g~~ 124 (212)
+.-...+.+|+|++ |...+..+++ ...+++|++
T Consensus 61 H~H~~~~E~~yVLe~~G~g~v~idge-~~~l~~GD~ 95 (157)
T 4h7l_A 61 HYHREHQEIYVVLDHAAHATIELNGQ-SYPLTKLLA 95 (157)
T ss_dssp BBCSSCEEEEEEEEECTTCEEEETTE-EEECCTTEE
T ss_pred eECCCCcEEEEEEecCcEEEEEECCE-EEEeCCCCE
Confidence 33334457999999 9999999875 467888864
No 178
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=28.18 E-value=2.3e+02 Score=22.70 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=22.5
Q ss_pred EEecCCC---eEEccCCCCCeeEEEecCEEEEEE
Q psy1917 81 AEYKADS---YVITEGEAGNDLFVSAEGEFQVIK 111 (212)
Q Consensus 81 ~~~~~g~---~I~~~Gd~~~~~yiI~~G~v~v~~ 111 (212)
..+-.|. +.++ -+..+.+|++++|.+.+-.
T Consensus 34 V~~vgGpN~R~d~H-~~~~dE~FyqlkG~m~l~~ 66 (286)
T 2qnk_A 34 VMFIGGPNTRKDYH-IEEGEEVFYQLEGDMVLRV 66 (286)
T ss_dssp EEEECSCBCCCCEE-ECSSCEEEEEEESCEEEEE
T ss_pred EEEEeCCCcCccCc-CCCCCeEEEEEeCeEEEEE
Confidence 3344566 7777 6678899999999988854
No 179
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=27.53 E-value=91 Score=24.79 Aligned_cols=28 Identities=25% Similarity=0.461 Sum_probs=23.7
Q ss_pred CCeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 96 GNDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 96 ~~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
...+++|++|.+.+..++ ....+++||+
T Consensus 239 ~~e~~~vl~G~~~~~i~~-~~~~l~~GD~ 266 (337)
T 1y3t_A 239 HTETFYCLEGQMTMWTDG-QEIQLNPGDF 266 (337)
T ss_dssp CEEEEEEEESCEEEEETT-EEEEECTTCE
T ss_pred CcEEEEEEeCEEEEEECC-EEEEECCCCE
Confidence 467999999999999977 4578899986
No 180
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=27.16 E-value=1.7e+02 Score=25.06 Aligned_cols=55 Identities=11% Similarity=0.208 Sum_probs=36.4
Q ss_pred HHHHHhhceEEEecCCCeEEcc-CCCCCeeEEEecCEEEEEEC---CEEE--EEeCCCCcc
Q psy1917 71 VKEMVESMHQAEYKADSYVITE-GEAGNDLFVSAEGEFQVIKD---GKIL--AVMGPGKAF 125 (212)
Q Consensus 71 ~~~l~~~~~~~~~~~g~~I~~~-Gd~~~~~yiI~~G~v~v~~~---~~~~--~~l~~g~~f 125 (212)
+..+--.+....+.+|.+..-. .-.++.+++|++|.+.+..- ++.+ ..|++||+|
T Consensus 317 L~~l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~GDv~ 377 (459)
T 2e9q_A 317 LRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVL 377 (459)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred ccccccceEEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeCCcEE
Confidence 3334445677888888876443 33467899999999998762 2333 347777753
No 181
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=26.37 E-value=76 Score=26.77 Aligned_cols=48 Identities=10% Similarity=0.142 Sum_probs=36.8
Q ss_pred hceEEEecCCCeEEccCCCCCeeEEEecCEEEEEE---CCEEEEEeCCCCc
Q psy1917 77 SMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIK---DGKILAVMGPGKA 124 (212)
Q Consensus 77 ~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~---~~~~~~~l~~g~~ 124 (212)
.+....+++|..+...--.++.+++|++|...+.. ++.....+++||+
T Consensus 53 s~~~~~l~pgg~~~ph~~~a~ei~yVl~G~~~v~~v~~~~~~~~~l~~GDv 103 (397)
T 2phl_A 53 RLVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDRREYFFLTSDN 103 (397)
T ss_dssp EEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEEEEEEEESSC
T ss_pred EEEEEEECCCcCccCEecCCCeEEEEEeeeEEEEEEeCCCcEEEEECCCCc
Confidence 45678888988876655567789999999988875 3456777888876
No 182
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A
Probab=25.91 E-value=28 Score=27.13 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=30.1
Q ss_pred eEEEecCCCeE-EccCCCCCeeEEEecCEEEEEE--------CCE-----------EEEEeCCCCc
Q psy1917 79 HQAEYKADSYV-ITEGEAGNDLFVSAEGEFQVIK--------DGK-----------ILAVMGPGKA 124 (212)
Q Consensus 79 ~~~~~~~g~~I-~~~Gd~~~~~yiI~~G~v~v~~--------~~~-----------~~~~l~~g~~ 124 (212)
....+++|... .+--...+.+++|++|.+.+.. +++ ....+++||+
T Consensus 46 ~~~~~~PG~~~~~H~H~~~~E~~yVLeG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~ 111 (239)
T 2xlg_A 46 AHAQIPPGGGPMPHIHYFINEWFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQL 111 (239)
T ss_dssp EEEEECTTCSCCSEEESSEEEEEEETTCCCEEEEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEE
T ss_pred EEEEECCCCcCCCeECCCccEEEEEEEeEEEEEEEecccccCCCcccccccccCceeEEEECCCCE
Confidence 34466676543 2222234579999999999988 543 1678888875
No 183
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}
Probab=24.39 E-value=2.5e+02 Score=24.37 Aligned_cols=50 Identities=12% Similarity=0.293 Sum_probs=33.7
Q ss_pred hhceEEEecCCCeEEcc-CCCCCeeEEEecCEEEEEE---CCEEE--EEeCCCCcc
Q psy1917 76 ESMHQAEYKADSYVITE-GEAGNDLFVSAEGEFQVIK---DGKIL--AVMGPGKAF 125 (212)
Q Consensus 76 ~~~~~~~~~~g~~I~~~-Gd~~~~~yiI~~G~v~v~~---~~~~~--~~l~~g~~f 125 (212)
-.+....+.+|.+.--. .-.++.+.+|++|.+.+.. +++.+ ..|++||+|
T Consensus 358 iS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~ 413 (496)
T 3ksc_A 358 LSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNTVFDGELEAGRAL 413 (496)
T ss_dssp CEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred eeEEEEEeeCCeEECCeeCCCCCEEEEEEeceEEEEEEeCCCcEEEEEEecCCeEE
Confidence 35677888888776333 3457789999999999875 22332 357777653
No 184
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A
Probab=24.08 E-value=86 Score=26.61 Aligned_cols=48 Identities=19% Similarity=0.330 Sum_probs=35.0
Q ss_pred ceEEEecCCCeEEccCCCCCeeEEEecCEEEEEE---CCEEEEEeCCCCcc
Q psy1917 78 MHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIK---DGKILAVMGPGKAF 125 (212)
Q Consensus 78 ~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v~~---~~~~~~~l~~g~~f 125 (212)
+....+.+|..+.-.--.++.+++|++|...+.. ++.....+++||+|
T Consensus 46 l~~~~l~p~gl~~Phh~~A~ei~yV~~G~g~~g~V~~~~~~~~~l~~GDv~ 96 (418)
T 3s7i_A 46 IVQIEAKPNTLVLPKHADADNILVIQQGQATVTVANGNNRKSFNLDEGHAL 96 (418)
T ss_dssp EEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEE
T ss_pred EEEEEecCCceeeeeeCCCCeEEEEEEeeEEEEEEecCCEEEEEecCCCEE
Confidence 3456677777776665556789999999987765 34577888888764
No 185
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=23.67 E-value=68 Score=22.54 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=27.9
Q ss_pred hceEEEecCCCeEEccCCCCCeeEEEecCEEEE
Q psy1917 77 SMHQAEYKADSYVITEGEAGNDLFVSAEGEFQV 109 (212)
Q Consensus 77 ~~~~~~~~~g~~I~~~Gd~~~~~yiI~~G~v~v 109 (212)
.+...++++|..+-..-..+...++|++|.+..
T Consensus 45 ~~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~ 77 (145)
T 2o1q_A 45 WTAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV 77 (145)
T ss_dssp EEEEEEECTTEEECCEEESSCEEEEEEEEEEEE
T ss_pred EEEEEEECCCCCCCccCCCCCEEEEEEEeEEEE
Confidence 356789999999987777778889999999985
No 186
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}
Probab=22.82 E-value=2.6e+02 Score=24.08 Aligned_cols=54 Identities=15% Similarity=0.282 Sum_probs=34.9
Q ss_pred HHHHhhceEEEecCCCeEEcc-CCCCCeeEEEecCEEEEEE---CCE--EEEEeCCCCcc
Q psy1917 72 KEMVESMHQAEYKADSYVITE-GEAGNDLFVSAEGEFQVIK---DGK--ILAVMGPGKAF 125 (212)
Q Consensus 72 ~~l~~~~~~~~~~~g~~I~~~-Gd~~~~~yiI~~G~v~v~~---~~~--~~~~l~~g~~f 125 (212)
..+--.+....+.+|-+.--. .-.++.+.+|++|.+.+.. +++ ....|++||+|
T Consensus 319 ~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~ 378 (466)
T 3kgl_A 319 RFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLL 378 (466)
T ss_dssp HHHTCEEEEEEEETTEEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred ccCceeeEEEEeecCcEeeeeECCCCCEEEEEEeceEEEEEEeCCCcEEEEeEecCCcEE
Confidence 334445677888888776333 3346789999999998865 222 23457777653
No 187
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=22.11 E-value=1.1e+02 Score=21.01 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=21.0
Q ss_pred CeeEEEecCEEEEEECCEEEEEeCCCCc
Q psy1917 97 NDLFVSAEGEFQVIKDGKILAVMGPGKA 124 (212)
Q Consensus 97 ~~~yiI~~G~v~v~~~~~~~~~l~~g~~ 124 (212)
-.+.+|.+|...+..+++ ...+++|++
T Consensus 39 ~~i~~v~~G~~~~~i~~~-~~~l~~Gd~ 65 (164)
T 2arc_A 39 YILNLTIRGQGVVKNQGR-EFVCRPGDI 65 (164)
T ss_dssp EEEEEEEEECEEEEETTE-EEEECTTCE
T ss_pred eEEEEEEEeEEEEEECCE-EEEecCCeE
Confidence 357889999999998774 456788864
No 188
>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0
Probab=21.33 E-value=1.3e+02 Score=20.57 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=20.8
Q ss_pred CCCeeEEEecCEEEEEECCE-EEEEeCCCCcc
Q psy1917 95 AGNDLFVSAEGEFQVIKDGK-ILAVMGPGKAF 125 (212)
Q Consensus 95 ~~~~~yiI~~G~v~v~~~~~-~~~~l~~g~~f 125 (212)
.....--|++|.+.|..++. .+..+..|+.|
T Consensus 56 ~~~E~MevvsG~l~V~Lpg~~eW~~~~aGesF 87 (111)
T 3hqx_A 56 HVPERMEIISGECRVKIADSTESELFRAGQSF 87 (111)
T ss_dssp SSCEEEEEEESEEEEEETTCSSCEEEETTCEE
T ss_pred CCcEEEEEEEeEEEEEcCCcccCEEeCCCCEE
Confidence 33456677888888887764 56666666653
No 189
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=21.21 E-value=81 Score=25.82 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=27.7
Q ss_pred EEecCCCeE---EccCCCCCeeEEEecCEEEEEECC----EEEEEeCCCCc
Q psy1917 81 AEYKADSYV---ITEGEAGNDLFVSAEGEFQVIKDG----KILAVMGPGKA 124 (212)
Q Consensus 81 ~~~~~g~~I---~~~Gd~~~~~yiI~~G~v~v~~~~----~~~~~l~~g~~ 124 (212)
...+.+... .+.-...+.+++|++|.+.+..++ .....|++||+
T Consensus 53 ~~~p~g~~~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~L~~GD~ 103 (350)
T 1juh_A 53 TNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDY 103 (350)
T ss_dssp EEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCCEEEEEETTCE
T ss_pred EEcCCCCCCCCccccCCCceEEEEEEEEEEEEEECCcCCceEEEEECCCCE
Confidence 334444444 233333567888999999998754 15667777774
Done!