RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1917
(212 letters)
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 136
Score = 71.3 bits (174), Expect = 1e-16
Identities = 27/97 (27%), Positives = 53/97 (54%)
Query: 45 KDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAE 104
KD+++ + AI N +LD + ++ ++M + A VI +G+ G++ +V +
Sbjct: 10 KDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQ 69
Query: 105 GEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIR 141
GE V + + +G G +FGELA++Y R A+++
Sbjct: 70 GEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATVK 106
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 136
Score = 64.4 bits (156), Expect = 5e-14
Identities = 32/168 (19%), Positives = 62/168 (36%), Gaps = 48/168 (28%)
Query: 43 YDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVS 102
+ K + ++ A D KNLD Q+ +++++M + K +VI +G+ G++ +
Sbjct: 4 HPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFY-- 61
Query: 103 AEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHFNFSVSAEGEFQVI 162
+ + +
Sbjct: 62 ----------------------------------------------VIDRGTFDIYVKCD 75
Query: 163 KDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQK 210
G+ + +FGELA++YN R A+I A +P +W LDR F++
Sbjct: 76 GVGRCVGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRR 123
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 147
Score = 53.3 bits (127), Expect = 7e-10
Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 41/149 (27%)
Query: 62 FLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGP 121
FLK+L+ + ++V+ + Y +I +G++ + F+ GE ++ K
Sbjct: 9 FLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRK------- 61
Query: 122 GKAFGELAILYNCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELA 181
+A G+ FGELA
Sbjct: 62 ----------------------------------GKSDIEENGAVEIARCLRGQYFGELA 87
Query: 182 ILYNCTRTASIRALTPCKVWMLDRRVFQK 210
++ N R AS A+ K +D + F++
Sbjct: 88 LVTNKPRAASAHAIGTVKCLAMDVQAFER 116
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 132
Score = 43.6 bits (102), Expect = 2e-06
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 177 FGELAILYNCTRTASIRALTPCKVWMLDRRVFQK 210
FGE+A+L N R A++ A P K LDR F++
Sbjct: 78 FGEIALLMNRPRAATVVARGPLKCVKLDRPRFER 111
Score = 39.8 bits (92), Expect = 4e-05
Identities = 20/87 (22%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 61 DFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGK------ 114
L++LD + + +++ +++ ++ +GE G++ F+ EG V++
Sbjct: 8 SILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFV 67
Query: 115 ILAVMGPGKAFGELAILYNCTRTASIR 141
+ +GP FGE+A+L N R A++
Sbjct: 68 EVGRLGPSDYFGEIALLMNRPRAATVV 94
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 155
Score = 42.9 bits (100), Expect = 4e-06
Identities = 16/173 (9%), Positives = 43/173 (24%), Gaps = 46/173 (26%)
Query: 38 IQIQRYDKDFRSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGN 97
+ + ++ +I + + ++++ + + + +G+ G
Sbjct: 7 LDKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGT 66
Query: 98 DLFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHFNFSVSAEG 157
+ + G L S + +A G
Sbjct: 67 NWYAVLAGS------------------------LDVKVSETSSHQDAVTICTLGIGTAFG 102
Query: 158 EFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQK 210
E IL N R A+I ++ +++ F+
Sbjct: 103 ES----------------------ILDNTPRHATIVTRESSELLRIEQEDFKA 133
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 132
Score = 40.2 bits (93), Expect = 2e-05
Identities = 22/142 (15%), Positives = 43/142 (30%), Gaps = 48/142 (33%)
Query: 70 QVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMGPGKAFGELA 129
++ + H +Y + S +I +GE L+ +G V+ + M
Sbjct: 5 TLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMIL-------- 56
Query: 130 ILYNCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNC-TR 188
+ + G GEL + R
Sbjct: 57 ---------------------------------------SYLNQGDFIGELGLFEEGQER 77
Query: 189 TASIRALTPCKVWMLDRRVFQK 210
+A +RA T C+V + + F++
Sbjct: 78 SAWVRAKTACEVAEISYKKFRQ 99
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti
[TaxId: 381]}
Length = 133
Score = 37.4 bits (86), Expect = 3e-04
Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 7/112 (6%)
Query: 40 IQRYDKDF-RSKQLIKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGND 98
++R DF R+ QL+ A + L + E+V ++ A + + GE G+
Sbjct: 1 VRR--GDFVRNWQLVAAV----PLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDR 54
Query: 99 LFVSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHFN 150
+F EG V + G L + T S +++L +
Sbjct: 55 MFFVVEGSVSVATPNPVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLH 106
Score = 30.1 bits (67), Expect = 0.087
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 171 MGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQK 210
+GPG FGE+A++ R+A++ A T + L FQ
Sbjct: 73 LGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQM 112
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 124
Score = 35.5 bits (81), Expect = 0.001
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 169 AVMGPGKAFGELAILYNCTRTASIRALTP-CKVWMLDRRVFQK 210
+ G FG+LA++ + R ASI C +D+ F +
Sbjct: 74 CTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNR 116
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 193
Score = 36.2 bits (82), Expect = 0.001
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 153 VSAEGEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQK 210
G V+ G + G FGE+ +L RTAS+RA T C+++ L F +
Sbjct: 114 FIQHGVVSVLTKGNKEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNE 171
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel
6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 137
Score = 35.3 bits (80), Expect = 0.001
Identities = 16/164 (9%), Positives = 45/164 (27%), Gaps = 49/164 (29%)
Query: 53 IKAAIMDNDFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKD 112
+ + +N+D + + E + + SY++ EG+ N++ G + +
Sbjct: 4 GSSGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTT 63
Query: 113 ------GKILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGK 166
+++ G G+ + + +
Sbjct: 64 DGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGS-------------------------- 97
Query: 167 ILAVMGPGKAFGELAILYNCTRTASIRALTPCKVWMLDRRVFQK 210
+ T +++ALT + + L +
Sbjct: 98 -----------------NLPSSTRTVKALTEVEAFALIADELKF 124
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396,
N-terminal domain {Porphyromonas gingivalis [TaxId:
837]}
Length = 142
Score = 34.4 bits (78), Expect = 0.003
Identities = 22/150 (14%), Positives = 46/150 (30%), Gaps = 47/150 (31%)
Query: 61 DFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKDGKILAVMG 120
D L+ + + + + + K S V +EG+ N+LF EG+ +++++
Sbjct: 7 DVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILRE-------- 58
Query: 121 PGKAFGELAILYNCTRTASIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAFGEL 180
V I ++ PG+ FG
Sbjct: 59 ---------------------------------------GVYGRFHISRIVKPGQFFGMR 79
Query: 181 AILYNCTRTASIRALTPCKVWMLDRRVFQK 210
T +++ A+ KV + +
Sbjct: 80 PYFAEETCSSTAIAVENSKVLAIPVEAIEA 109
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 134
Score = 33.6 bits (76), Expect = 0.006
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 70 QVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVIKD-----GKILAVMGPGKA 124
+ +++ H+ Y A S +I G+ LF +G ++ + I+ + G
Sbjct: 4 HLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDF 63
Query: 125 FGELAIL 131
FGEL +
Sbjct: 64 FGELGLF 70
>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator
TM1171, N-terminal domain {Thermotoga maritima [TaxId:
2336]}
Length = 129
Score = 30.3 bits (67), Expect = 0.084
Identities = 8/77 (10%), Positives = 24/77 (31%), Gaps = 5/77 (6%)
Query: 69 LQVKEMVESMHQAEYKADSYVITEGEAGNDLFVSAEGEFQVI-----KDGKILAVMGPGK 123
+ +K+++ ++ V + + D+ + EG + + + P +
Sbjct: 1 MDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQ 60
Query: 124 AFGELAILYNCTRTASI 140
I + R
Sbjct: 61 IIASGFIFSSEPRFPVN 77
>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal
domain {Rhodospirillum rubrum [TaxId: 1085]}
Length = 132
Score = 28.5 bits (62), Expect = 0.30
Identities = 7/41 (17%), Positives = 12/41 (29%)
Query: 61 DFLKNLDTLQVKEMVESMHQAEYKADSYVITEGEAGNDLFV 101
+ L + + + S V T N +FV
Sbjct: 5 NIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFV 45
>d1knma_ b.42.2.1 (A:) Xylan binding domain, CBM13
(Endo-1,4-beta-xylanase C-terminal domain) {Streptomyces
lividans [TaxId: 1916]}
Length = 129
Score = 27.2 bits (59), Expect = 1.0
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 12/90 (13%)
Query: 105 GEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHFNFSVSAEGEFQVIKD 164
G+ + + G+ L V + G L++C + + T +
Sbjct: 6 GQIKGVGSGRCLDVPDASTSDGTQLQLWDCHSGTNQQWAATDAGELR----------VYG 55
Query: 165 GKILAVMGPGKAFGELAILYNCTRTASIRA 194
K L G G +Y+C + +
Sbjct: 56 DKCLDAAGTSN--GSKVQIYSCWGGDNQKW 83
>d1rzob1 b.42.2.1 (B:2001-2135) Plant cytotoxin B-chain (lectin)
{Castor bean (Ricinus communis), Ricin [TaxId: 3988]}
Length = 135
Score = 26.3 bits (57), Expect = 1.8
Identities = 13/97 (13%), Positives = 31/97 (31%), Gaps = 10/97 (10%)
Query: 98 DLFVSAEGEFQVI-KDGKILAVMGPGKAFGELAILYNCTRTASIRGFLTVLHFNFSVSAE 156
D+ + E +++ ++G + V G G L+ C +N +
Sbjct: 2 DVCMDPEPIVRIVGRNGLCVDVTGEEFFDGNPIQLWPCKSNTD---------WNQLWTLR 52
Query: 157 GEFQVIKDGKILAVMGPGKAFGELAILYNCTRTASIR 193
+ + +GK L + + + + R
Sbjct: 53 KDSTIRSNGKCLTISKSSPRQQVVIYNCSTATVGATR 89
>d1hwmb1 b.42.2.1 (B:3-135) Plant cytotoxin B-chain (lectin)
{Sambucus ebulus, ebulin [TaxId: 28503]}
Length = 133
Score = 25.6 bits (55), Expect = 3.2
Identities = 6/35 (17%), Positives = 11/35 (31%)
Query: 111 KDGKILAVMGPGKAFGELAILYNCTRTASIRGFLT 145
+DG + V G L+ C + +
Sbjct: 16 RDGLCVDVRNGYDTDGTPIQLWPCGTQRNQQWTFY 50
>d1l1la_ c.7.1.4 (A:) B12-dependent (class II) ribonucleotide
reductase {Lactobacillus leichmannii [TaxId: 28039]}
Length = 721
Score = 26.4 bits (57), Expect = 3.6
Identities = 14/111 (12%), Positives = 26/111 (23%), Gaps = 4/111 (3%)
Query: 71 VKEMVESMHQAEYKADSYVITEGEAGN-DLFVSAEGEFQVIKDGKILAVMGPGKAFGELA 129
V E ++ + S + + + G+ L + G
Sbjct: 52 VVEGNINLDPRLQDSPSLELKQSLTEEAERLYKLIYGLGATPSGRNLWISGTDYQRRTGD 111
Query: 130 ILYNCTRTA---SIRGFLTVLHFNFSVSAEGEFQVIKDGKILAVMGPGKAF 177
L NC A G ++ + + G G F
Sbjct: 112 SLNNCWFVAIRPQKYGDSKIVPSYLGKQEKAVSMPFSFLFDELMKGGGVGF 162
>d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 157
Score = 25.0 bits (55), Expect = 5.5
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 35 ANDIQIQRYDKDFRSKQLIKAAI----MDNDFLKNLDTLQ 70
A ++ ++++ F +AA L+ DT++
Sbjct: 30 AEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIR 69
>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium
tumefaciens [TaxId: 358]}
Length = 316
Score = 25.3 bits (54), Expect = 6.6
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 127 ELAILYNCTRTASIRGFLTVLHFNFSVSAEGEFQVIKD 164
EL L +R +++R FLT L+ ++ + G V KD
Sbjct: 257 ELEALPLLSRGSALRFFLTRLY-DWLTTPAGALVVKKD 293
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.378
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 726,431
Number of extensions: 31562
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 26
Length of query: 212
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 131
Effective length of database: 1,295,466
Effective search space: 169706046
Effective search space used: 169706046
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.2 bits)