Query psy1918
Match_columns 251
No_of_seqs 119 out of 1114
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 19:36:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1918.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1918hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03750 proteasome_alpha_type_ 100.0 5.1E-62 1.1E-66 415.5 29.5 224 11-238 1-226 (227)
2 PTZ00246 proteasome subunit al 100.0 1E-61 2.2E-66 419.9 30.0 235 9-246 3-246 (253)
3 KOG0176|consensus 100.0 2.4E-61 5.3E-66 385.6 20.3 232 6-241 1-241 (241)
4 PRK03996 proteasome subunit al 100.0 7.4E-60 1.6E-64 405.7 29.9 232 7-242 6-240 (241)
5 cd03749 proteasome_alpha_type_ 100.0 1.3E-59 2.9E-64 396.5 27.2 211 11-221 1-211 (211)
6 TIGR03633 arc_protsome_A prote 100.0 5.3E-59 1.2E-63 396.3 27.5 221 9-233 1-224 (224)
7 cd03751 proteasome_alpha_type_ 100.0 7.8E-59 1.7E-63 391.8 26.4 209 9-220 2-212 (212)
8 cd03752 proteasome_alpha_type_ 100.0 5.2E-58 1.1E-62 387.4 26.6 209 9-220 1-213 (213)
9 KOG0863|consensus 100.0 3.3E-58 7.2E-63 375.4 23.6 240 6-245 1-240 (264)
10 COG0638 PRE1 20S proteasome, a 100.0 4E-57 8.7E-62 386.7 28.8 231 9-244 1-235 (236)
11 KOG0183|consensus 100.0 2.9E-58 6.2E-63 372.1 19.4 234 9-246 2-238 (249)
12 cd03756 proteasome_alpha_arche 100.0 4.2E-57 9.1E-62 381.3 27.2 208 10-221 1-210 (211)
13 cd03754 proteasome_alpha_type_ 100.0 3.7E-57 8E-62 382.6 26.6 209 10-220 1-215 (215)
14 cd03755 proteasome_alpha_type_ 100.0 3.5E-57 7.6E-62 380.7 26.4 204 11-220 1-207 (207)
15 cd03753 proteasome_alpha_type_ 100.0 1.6E-55 3.5E-60 372.2 25.9 206 11-220 1-213 (213)
16 cd01911 proteasome_alpha prote 100.0 1.4E-55 3.1E-60 371.5 25.1 206 11-220 1-209 (209)
17 KOG0181|consensus 100.0 9E-56 2E-60 352.9 18.6 231 6-241 1-233 (233)
18 KOG0178|consensus 100.0 4.9E-55 1.1E-59 352.5 23.0 238 9-248 3-247 (249)
19 KOG0182|consensus 100.0 7.8E-55 1.7E-59 351.6 23.6 237 7-245 5-246 (246)
20 KOG0184|consensus 100.0 7.1E-54 1.5E-58 348.3 22.0 232 8-242 5-239 (254)
21 PTZ00488 Proteasome subunit be 100.0 2.6E-46 5.7E-51 321.7 24.9 206 33-248 35-245 (247)
22 TIGR03691 20S_bact_alpha prote 100.0 1E-45 2.2E-50 314.5 26.0 203 27-238 17-228 (228)
23 TIGR03690 20S_bact_beta protea 100.0 1.4E-45 3.1E-50 312.6 25.1 205 36-245 1-218 (219)
24 cd03758 proteasome_beta_type_2 100.0 1.3E-44 2.7E-49 301.3 23.9 186 38-229 2-191 (193)
25 cd03760 proteasome_beta_type_4 100.0 1.1E-44 2.4E-49 302.6 22.9 189 36-228 1-194 (197)
26 cd03759 proteasome_beta_type_3 100.0 1.5E-44 3.2E-49 301.3 23.4 182 36-224 2-188 (195)
27 cd03761 proteasome_beta_type_5 100.0 3.2E-44 6.9E-49 297.7 23.7 184 38-229 1-187 (188)
28 cd03757 proteasome_beta_type_1 100.0 1.6E-43 3.5E-48 298.7 23.4 186 34-224 5-201 (212)
29 TIGR03634 arc_protsome_B prote 100.0 3.2E-43 6.8E-48 290.9 23.6 181 37-224 1-184 (185)
30 cd03763 proteasome_beta_type_7 100.0 1.1E-42 2.3E-47 288.8 23.5 184 38-230 1-187 (189)
31 cd03764 proteasome_beta_archea 100.0 1.5E-42 3.2E-47 287.6 24.3 185 38-230 1-188 (188)
32 cd03762 proteasome_beta_type_6 100.0 1E-41 2.3E-46 282.6 23.4 179 38-224 1-183 (188)
33 cd03765 proteasome_beta_bacter 100.0 9.1E-42 2E-46 290.8 23.6 182 39-224 2-201 (236)
34 PF00227 Proteasome: Proteasom 100.0 2.4E-41 5.3E-46 280.1 22.6 184 34-220 1-190 (190)
35 cd01912 proteasome_beta protea 100.0 7.6E-41 1.6E-45 277.4 23.5 182 38-227 1-186 (189)
36 cd01906 proteasome_protease_Hs 100.0 8.2E-40 1.8E-44 269.2 23.7 178 38-220 1-182 (182)
37 KOG0175|consensus 100.0 2.1E-37 4.5E-42 257.0 16.4 206 34-247 68-276 (285)
38 KOG0185|consensus 100.0 2.5E-36 5.4E-41 247.7 14.7 222 15-240 13-246 (256)
39 KOG0179|consensus 100.0 2.1E-35 4.5E-40 238.6 19.0 187 34-225 26-225 (235)
40 KOG0177|consensus 100.0 2.6E-34 5.6E-39 229.0 16.5 186 39-230 3-192 (200)
41 KOG0173|consensus 100.0 2.8E-34 6E-39 237.9 16.9 184 33-224 33-219 (271)
42 KOG0174|consensus 100.0 5.9E-34 1.3E-38 227.6 14.3 198 33-238 15-217 (224)
43 KOG0180|consensus 100.0 1.2E-30 2.7E-35 205.0 17.1 183 35-224 6-193 (204)
44 PRK05456 ATP-dependent proteas 100.0 9.2E-30 2E-34 207.2 18.7 165 37-219 1-171 (172)
45 cd01901 Ntn_hydrolase The Ntn 100.0 1E-28 2.2E-33 197.6 21.8 159 38-201 1-163 (164)
46 cd01913 protease_HslV Protease 100.0 4E-29 8.7E-34 202.3 19.0 162 38-219 1-170 (171)
47 TIGR03692 ATP_dep_HslV ATP-dep 100.0 1.6E-28 3.5E-33 198.8 18.6 164 38-219 1-170 (171)
48 PF10584 Proteasome_A_N: Prote 99.5 3.5E-15 7.5E-20 79.5 1.9 23 11-33 1-23 (23)
49 COG5405 HslV ATP-dependent pro 99.3 9.9E-11 2.1E-15 92.1 12.2 166 36-221 3-176 (178)
50 COG3484 Predicted proteasome-t 99.2 2.7E-10 5.8E-15 92.8 12.0 182 39-224 3-202 (255)
51 PF09894 DUF2121: Uncharacteri 96.8 0.044 9.6E-07 45.0 12.1 151 38-223 2-180 (194)
52 COG4079 Uncharacterized protei 95.2 1.3 2.9E-05 37.8 14.3 168 38-238 2-197 (293)
53 cd06404 PB1_aPKC PB1 domain is 71.9 29 0.00062 24.8 6.9 55 185-246 18-73 (83)
54 KOG3361|consensus 69.6 11 0.00024 29.3 4.6 81 150-245 71-151 (157)
55 smart00481 POLIIIAc DNA polyme 52.3 18 0.00039 24.0 2.9 32 16-47 6-38 (67)
56 PF07499 RuvA_C: RuvA, C-termi 51.0 12 0.00026 23.4 1.8 33 166-199 13-45 (47)
57 PF11211 DUF2997: Protein of u 36.2 68 0.0015 20.3 3.5 34 149-182 2-35 (48)
58 PF06057 VirJ: Bacterial virul 34.3 54 0.0012 27.3 3.6 33 107-143 44-76 (192)
59 PF08289 Flu_M1_C: Influenza M 33.1 1.4E+02 0.003 21.2 4.9 51 79-129 38-88 (95)
60 TIGR02261 benz_CoA_red_D benzo 30.3 51 0.0011 28.8 3.0 52 139-199 104-158 (262)
61 PF02831 gpW: gpW; InterPro: 29.7 1.6E+02 0.0034 20.2 4.7 50 187-244 1-53 (68)
62 PF03928 DUF336: Domain of unk 29.5 73 0.0016 24.3 3.5 36 185-225 1-36 (132)
63 PRK02260 S-ribosylhomocysteina 29.2 2.6E+02 0.0057 22.5 6.6 61 146-206 71-150 (158)
64 PF08140 Cuticle_1: Crustacean 29.1 82 0.0018 19.2 2.8 29 17-52 5-33 (40)
65 PF02811 PHP: PHP domain; Int 28.8 47 0.001 25.9 2.3 31 16-46 7-38 (175)
66 PF07104 DUF1366: Protein of u 27.7 53 0.0011 25.0 2.3 52 152-206 11-62 (116)
67 COG4728 Uncharacterized protei 24.9 74 0.0016 23.6 2.5 30 68-97 10-39 (124)
68 COG0279 GmhA Phosphoheptose is 24.8 81 0.0017 25.7 2.9 36 18-53 116-152 (176)
69 TIGR03192 benz_CoA_bzdQ benzoy 24.6 83 0.0018 27.9 3.3 49 139-196 132-183 (293)
70 PRK09732 hypothetical protein; 24.3 2.2E+02 0.0047 22.2 5.2 36 185-225 5-40 (134)
71 cd06402 PB1_p62 The PB1 domain 23.0 2.9E+02 0.0063 19.8 5.8 50 186-242 26-76 (87)
72 COG4245 TerY Uncharacterized p 22.6 1.2E+02 0.0026 25.3 3.6 36 191-227 22-57 (207)
73 PRK14603 ruvA Holliday junctio 22.6 1.2E+02 0.0027 25.1 3.8 38 164-201 160-197 (197)
74 PRK05578 cytidine deaminase; V 22.4 3.1E+02 0.0067 21.1 5.8 37 187-226 1-37 (131)
75 PF14804 Jag_N: Jag N-terminus 22.3 1.3E+02 0.0028 19.3 3.1 29 186-222 4-32 (52)
76 TIGR02259 benz_CoA_red_A benzo 22.0 91 0.002 29.1 3.1 52 139-199 274-328 (432)
77 cd01784 rasfadin_RA Ubiquitin- 21.2 1.6E+02 0.0035 21.2 3.6 48 185-238 21-68 (87)
78 KOG3652|consensus 21.1 2.7E+02 0.0058 27.9 6.1 113 80-205 193-306 (1215)
79 COG0822 IscU NifU homolog invo 21.0 4.2E+02 0.0092 20.9 6.6 96 147-246 43-146 (150)
80 COG4537 ComGC Competence prote 20.9 2.1E+02 0.0045 21.2 4.2 28 86-113 49-77 (107)
81 smart00759 Flu_M1_C Influenza 20.7 2.9E+02 0.0063 19.7 4.7 51 78-128 37-87 (95)
82 KOG2445|consensus 20.6 1.5E+02 0.0033 26.6 4.0 52 39-90 240-316 (361)
83 PF04539 Sigma70_r3: Sigma-70 20.6 1.5E+02 0.0033 19.9 3.4 32 90-121 3-34 (78)
84 PF14555 UBA_4: UBA-like domai 20.4 1.3E+02 0.0027 18.2 2.6 25 166-195 11-35 (43)
85 PF07661 MORN_2: MORN repeat v 20.1 43 0.00094 16.6 0.4 14 14-27 4-17 (22)
No 1
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.1e-62 Score=415.55 Aligned_cols=224 Identities=35% Similarity=0.626 Sum_probs=215.9
Q ss_pred CCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHHHH
Q psy1918 11 YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARI 88 (251)
Q Consensus 11 yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~ 88 (251)
||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++. ++.+||++|++|++|++||+.+|++.
T Consensus 1 yd~~~t~fsp~Grl~QveyA~~av~~G~t~igik~~dgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (227)
T cd03750 1 YSFSLTTFSPSGKLVQIEYALAAVSSGAPSVGIKAANGVVLATEKKVPSPLIDESSVHKVEQITPHIGMVYSGMGPDFRV 80 (227)
T ss_pred CCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecCCccccCCCCcceEEEEcCCEEEEEeEcHHhHHH
Confidence 8999999999999999999999999999999999999999999999987765 47899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcC
Q psy1918 89 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGS 168 (251)
Q Consensus 89 l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~ 168 (251)
+.+.+|.+++.|++.+|++++++.++++|++.+|.|+++++.|||++++||+|||++||+||.+||+|++.+++++|+|+
T Consensus 81 l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~g~~Ly~~d~~G~~~~~~~~a~G~ 160 (227)
T cd03750 81 LVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEGGPYLYQVDPSGSYFTWKATAIGK 160 (227)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCCCCEEEEECCCCCEEeeeEEEECC
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred ChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHH
Q psy1918 169 RSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238 (251)
Q Consensus 169 g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l 238 (251)
|++.++++|+++|+ ++|+++||++++++||+.+++|| +++++++|++|++++++++++++||+++|
T Consensus 161 g~~~~~~~Le~~~~--~~ms~eeai~l~~~~l~~~~~~~--l~~~~iev~iv~~~~~~~~~~~~ei~~~~ 226 (227)
T cd03750 161 NYSNAKTFLEKRYN--EDLELEDAIHTAILTLKEGFEGQ--MTEKNIEIGICGETKGFRLLTPAEIKDYL 226 (227)
T ss_pred CCHHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHhccc--CCCCcEEEEEEECCCCEEECCHHHHHHHh
Confidence 99999999999999 69999999999999999999886 58899999999987669999999999987
No 2
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1e-61 Score=419.90 Aligned_cols=235 Identities=35% Similarity=0.512 Sum_probs=223.7
Q ss_pred ccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHH
Q psy1918 9 NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTAD 85 (251)
Q Consensus 9 ~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D 85 (251)
++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++. ++.+|||+|+++++||++|+.+|
T Consensus 3 ~~yd~~~~~fsp~Grl~QvEYA~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 82 (253)
T PTZ00246 3 RRYDSRTTTFSPEGRLYQVEYALEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTAD 82 (253)
T ss_pred CccCCCCceECCCCEEhHHHHHHHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHH
Confidence 489999999999999999999999999999999999999999999999999875 35799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEE
Q psy1918 86 ARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAM 164 (251)
Q Consensus 86 ~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~ 164 (251)
++.+.+.+|.++..|++.++++++++.+++.++..+|.|+|+++.|||+|++||+|||+ +||+||.+||+|++.+++++
T Consensus 83 ~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~ 162 (253)
T PTZ00246 83 ANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKAT 162 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceEE
Confidence 99999999999999999999999999999999999999999999999999999999995 78999999999999999999
Q ss_pred EEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC-----ceEEecHHHHHHHHH
Q psy1918 165 AIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ-----KFKTLDERETGHYLS 239 (251)
Q Consensus 165 a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~-----~~~~l~~~ei~~~l~ 239 (251)
|+|+++..++++|++.|+ ++|+++||++++++||+.+..+|. .++.+++|++|+++| .|++|+++||+++|+
T Consensus 163 a~G~gs~~~~~~Le~~~~--~~ms~eeai~l~~~al~~~~~~d~-~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~~l~ 239 (253)
T PTZ00246 163 AIGQNNQTAQSILKQEWK--EDLTLEQGLLLAAKVLTKSMDSTS-PKADKIEVGILSHGETDGEPIQKMLSEKEIAELLK 239 (253)
T ss_pred EECCCcHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHhccC-CCCCcEEEEEEecCCcCCCCCeEECCHHHHHHHHH
Confidence 999999999999999998 699999999999999999999986 788999999999864 389999999999999
Q ss_pred Hhhhhhh
Q psy1918 240 LIEGEER 246 (251)
Q Consensus 240 ~~~~~~~ 246 (251)
++++++.
T Consensus 240 ~~~~~~~ 246 (253)
T PTZ00246 240 KVTQEYA 246 (253)
T ss_pred HHhhhhh
Confidence 9986653
No 3
>KOG0176|consensus
Probab=100.00 E-value=2.4e-61 Score=385.59 Aligned_cols=232 Identities=35% Similarity=0.561 Sum_probs=219.9
Q ss_pred cc--cccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeC
Q psy1918 6 KF--RNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAG 81 (251)
Q Consensus 6 ~~--~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG 81 (251)
|| |+.||+.+++|||||||||||||.+|++.|+|.|||+.++|||||+++|.+++|+ +...||++|++||+|++||
T Consensus 1 mfltrseydrgVNTfSpEGRlfQVEYaieAikLGsTaIGv~TkEgVvL~vEKritSpLm~p~sveKi~eid~HIgca~SG 80 (241)
T KOG0176|consen 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLMEPSSVEKIVEIDDHIGCAMSG 80 (241)
T ss_pred CcccHHHhcccccccCCCceeeehhhHHHHHhcCCceeeeeccceEEEEEeccccCcccCchhhhhheehhhceeeeccc
Confidence 55 9999999999999999999999999999999999999999999999999999987 5789999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcC-----CCCcceeeeeEEEEeCCCCeEEEECCCC
Q psy1918 82 LTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY-----DKRPYGVGLLVAGYDDAGPHIYQTCPSS 156 (251)
Q Consensus 82 ~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~-----~~rP~~v~~iv~G~d~~gp~ly~id~~G 156 (251)
+.+|++.+++..|.+|++|++.||++++++++++.++++..+|.... -.|||||++++||+|++||+||..||+|
T Consensus 81 l~aDarTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~gpqL~h~dPSG 160 (241)
T KOG0176|consen 81 LIADARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETGPQLYHLDPSG 160 (241)
T ss_pred cccchHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCCceEEEeCCCC
Confidence 99999999999999999999999999999999999999987776442 2489999999999999999999999999
Q ss_pred CeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHH
Q psy1918 157 NYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGH 236 (251)
Q Consensus 157 ~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~ 236 (251)
++.++++-|+|+|++-|++.|++.|+ ++++++||+.+++..|+.+++. +++.+|+++++|++++.|++++++|+++
T Consensus 161 tf~~~~AKAIGSgsEga~~~L~~e~~--~~ltL~ea~~~~L~iLkqVMee--Kl~~~Nvev~~vt~e~~f~~~t~EE~~~ 236 (241)
T KOG0176|consen 161 TFIRYKAKAIGSGSEGAESSLQEEYH--KDLTLKEAEKIVLKILKQVMEE--KLNSNNVEVAVVTPEGEFHIYTPEEVEQ 236 (241)
T ss_pred ceEEecceeccccchHHHHHHHHHHh--hcccHHHHHHHHHHHHHHHHHH--hcCccceEEEEEcccCceEecCHHHHHH
Confidence 99999999999999999999999999 5999999999999999999964 4789999999999998899999999999
Q ss_pred HHHHh
Q psy1918 237 YLSLI 241 (251)
Q Consensus 237 ~l~~~ 241 (251)
++.++
T Consensus 237 ~i~~~ 241 (241)
T KOG0176|consen 237 VIKRL 241 (241)
T ss_pred HHhcC
Confidence 98654
No 4
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=7.4e-60 Score=405.66 Aligned_cols=232 Identities=39% Similarity=0.577 Sum_probs=221.1
Q ss_pred ccccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHH
Q psy1918 7 FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTA 84 (251)
Q Consensus 7 ~~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~ 84 (251)
..++||.++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.+.++. ++.+||++|+++++|++||+.+
T Consensus 6 ~~~~y~~~~~~fsp~Gr~~Q~eya~~av~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~ 85 (241)
T PRK03996 6 QQMGYDRAITIFSPDGRLYQVEYAREAVKRGTTAVGVKTKDGVVLAVDKRITSPLIEPSSIEKIFKIDDHIGAASAGLVA 85 (241)
T ss_pred cccccCCCCceECCCCeEhHHHHHHHHHHhCCCEEEEEeCCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEcccHH
Confidence 38999999999999999999999999999999999999999999999999987764 5789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEE
Q psy1918 85 DARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAM 164 (251)
Q Consensus 85 D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~ 164 (251)
|++.++++++.++..|++.++++++++.+++++++.+|.|+++++.|||++++||||||++||+||.+||.|++.+++++
T Consensus 86 D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~gp~Ly~id~~G~~~~~~~~ 165 (241)
T PRK03996 86 DARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYLEYKAT 165 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCCcCEEEEECCCCCeecceEE
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred EEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC-ceEEecHHHHHHHHHHhh
Q psy1918 165 AIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ-KFKTLDERETGHYLSLIE 242 (251)
Q Consensus 165 a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~-~~~~l~~~ei~~~l~~~~ 242 (251)
|+|+++..++++|++.|+ ++|+++||++++++||+.+.+++ .++++++|++|+++| +|+.++++||+.++..+-
T Consensus 166 a~G~g~~~~~~~Le~~~~--~~~s~eeai~l~~~al~~~~~~~--~~~~~i~i~ii~~~~~~~~~~~~~ei~~~~~~~~ 240 (241)
T PRK03996 166 AIGAGRDTVMEFLEKNYK--EDLSLEEAIELALKALAKANEGK--LDPENVEIAYIDVETKKFRKLSVEEIEKYLEKLL 240 (241)
T ss_pred EECCCcHHHHHHHHHhcc--cCCCHHHHHHHHHHHHHHHhccC--CCCCcEEEEEEECCCCcEEECCHHHHHHHHHHhh
Confidence 999999999999999999 69999999999999999998753 688999999999986 499999999999998753
No 5
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-59 Score=396.47 Aligned_cols=211 Identities=67% Similarity=1.117 Sum_probs=203.5
Q ss_pred CCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccccccCceEEEcCcEEEEEeCcHHHHHHHH
Q psy1918 11 YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILA 90 (251)
Q Consensus 11 yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~ 90 (251)
||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++.++.+|||+|+++++|++||+.+|++.+.
T Consensus 1 yd~~~t~fsp~Grl~Qveya~~av~~G~t~IgIk~~dgVvlaad~r~~~~l~~~~~KI~~I~~~i~~~~sG~~~D~~~l~ 80 (211)
T cd03749 1 YDTDVTTWSPQGRLFQVEYAMEAVKQGSATVGLKSKTHAVLVALKRATSELSSYQKKIFKVDDHIGIAIAGLTADARVLS 80 (211)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHhcCCCEEEEEeCCEEEEEEeccCccccCCccccEEEeCCCEEEEEEeChHhHHHHH
Confidence 89999999999999999999999999999999999999999999999888877889999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCCh
Q psy1918 91 RFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRS 170 (251)
Q Consensus 91 ~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~ 170 (251)
+++|.+++.|+++++++++++.+++.+++.+|.|+++.+.|||+|++||+|||++||+||++||+|++.+++++|+|+++
T Consensus 81 ~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~gp~Ly~~Dp~G~~~~~~~~a~G~g~ 160 (211)
T cd03749 81 RYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESGPHLFQTCPSGNYFEYKATSIGARS 160 (211)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCCCeEEEECCCcCEeeeeEEEECCCc
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEe
Q psy1918 171 QSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVG 221 (251)
Q Consensus 171 ~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~ 221 (251)
+.++++||++|+++++|+++||+++|+++|+.++++|..++++++||++|+
T Consensus 161 ~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 161 QSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred HHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 999999999999767999999999999999999988743789999999984
No 6
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=5.3e-59 Score=396.27 Aligned_cols=221 Identities=40% Similarity=0.601 Sum_probs=211.0
Q ss_pred ccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHH
Q psy1918 9 NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADA 86 (251)
Q Consensus 9 ~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~ 86 (251)
.+||.++|+|||+|||+|||||++|+++|+|+|||+++||||||+|++.+.++. ++.+||++|+++++|++||+.+|+
T Consensus 1 ~~~~~~~~~f~p~Grl~Qieya~~av~~G~tvigi~~~dgvvlaad~r~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~ 80 (224)
T TIGR03633 1 MGYDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKTKDGVVLAVDKRITSKLVEPSSIEKIFKIDDHIGAATSGLVADA 80 (224)
T ss_pred CCCCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCccccCCCccceEEEECCCEEEEEeecHHhH
Confidence 489999999999999999999999999999999999999999999999987664 578999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEE
Q psy1918 87 RILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAI 166 (251)
Q Consensus 87 ~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~ 166 (251)
+.+.+.++.++..|++.++++++++.++++|++.+|.|+++++.|||+|++||||+|++||+||.+||.|++.+++++|+
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~~~~~Ly~~D~~G~~~~~~~~a~ 160 (224)
T TIGR03633 81 RVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGALLEYKATAI 160 (224)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeCCcCEEEEECCCCCeecceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred cCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCc-eEEecHHH
Q psy1918 167 GSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQK-FKTLDERE 233 (251)
Q Consensus 167 G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~-~~~l~~~e 233 (251)
|+++..++++|++.|+ |+|+++||++++++||+.+.+ |. .++++++|++|+++|+ |+.++++|
T Consensus 161 G~g~~~~~~~L~~~~~--~~~~~eeai~l~~~al~~~~~-d~-~~~~~i~i~ii~~~g~~~~~~~~~~ 224 (224)
T TIGR03633 161 GAGRQAVTEFLEKEYR--EDLSLDEAIELALKALYSAVE-DK-LTPENVEVAYITVEDKKFRKLSVEE 224 (224)
T ss_pred CCCCHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHhc-cc-CCCCcEEEEEEEcCCCcEEECCCCC
Confidence 9999999999999999 699999999999999999987 74 7899999999999874 99888775
No 7
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.8e-59 Score=391.80 Aligned_cols=209 Identities=33% Similarity=0.464 Sum_probs=199.9
Q ss_pred ccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHH
Q psy1918 9 NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADA 86 (251)
Q Consensus 9 ~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~ 86 (251)
++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++.+. ++.+|||+|++|++|++||+.+|+
T Consensus 2 ~~yd~~~t~fsp~Grl~Qveya~~a~~~G~tvIgik~kdgVvla~d~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~ 81 (212)
T cd03751 2 TGYDLSASTFSPDGRVFQVEYANKAVENSGTAIGIRCKDGVVLAVEKLVTSKLYEPGSNKRIFNVDRHIGIAVAGLLADG 81 (212)
T ss_pred CCccCCCceECCCCcchHHHHHHHHHhcCCCEEEEEeCCEEEEEEEccccccccCcchhcceeEecCcEEEEEEEChHhH
Confidence 689999999999999999999999999999999999999999999999988764 578999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEE
Q psy1918 87 RILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAI 166 (251)
Q Consensus 87 ~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~ 166 (251)
+.+.+++|.+++.|++.++++++++.++++|++.+|.|++++++|||+|++||+|||++||+||.+||+|++.+++++|+
T Consensus 82 ~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~gp~Ly~~D~~Gs~~~~~~~a~ 161 (212)
T cd03751 82 RHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDGPQLYMIEPSGVSYGYFGCAI 161 (212)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCCcCEEEEECCCCCEEeeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred cCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEE
Q psy1918 167 GSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLV 220 (251)
Q Consensus 167 G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii 220 (251)
|+|+..++++||+.|+ ++||++||+++++++|+.+++.+ .....++||+++
T Consensus 162 G~g~~~a~~~Lek~~~--~dms~eeai~l~~~~L~~~~~~~-~~~~~~iei~~~ 212 (212)
T cd03751 162 GKGKQAAKTELEKLKF--SELTCREAVKEAAKIIYIVHDEI-KDKAFELELSWV 212 (212)
T ss_pred CCCCHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHhhcc-CCCCccEEEEEC
Confidence 9999999999999998 69999999999999999999754 367889999874
No 8
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.2e-58 Score=387.35 Aligned_cols=209 Identities=36% Similarity=0.582 Sum_probs=201.0
Q ss_pred ccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHH
Q psy1918 9 NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTAD 85 (251)
Q Consensus 9 ~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D 85 (251)
++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++. ++.+|||+|+++++|++||+.+|
T Consensus 1 ~~yd~~~~~fsp~Grl~Qveya~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (213)
T cd03752 1 RRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSD 80 (213)
T ss_pred CCcCCCCceECCCCEEhHHHhHHHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHh
Confidence 479999999999999999999999999999999999999999999999998874 37899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEE
Q psy1918 86 ARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAM 164 (251)
Q Consensus 86 ~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~ 164 (251)
++.+.+++|.+++.|+++++++++++.+++.|+..+|.|+++++.|||+|++|++|||+ .||+||.+||+|++.+++++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~ 160 (213)
T cd03752 81 ANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKAT 160 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999995 78999999999999999999
Q ss_pred EEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEE
Q psy1918 165 AIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLV 220 (251)
Q Consensus 165 a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii 220 (251)
|+|+++..++++||+.|+ |+|+++||++++++||+.+.+||. ..+.+++|++|
T Consensus 161 a~G~gs~~~~~~Le~~y~--~~ms~eea~~l~~~al~~~~~r~~-~~~~~~ei~~~ 213 (213)
T cd03752 161 AIGNNNQAAQSLLKQDYK--DDMTLEEALALAVKVLSKTMDSTK-LTSEKLEFATL 213 (213)
T ss_pred EECCCcHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHhccC-CCCCcEEEEEC
Confidence 999999999999999998 799999999999999999999885 78889999875
No 9
>KOG0863|consensus
Probab=100.00 E-value=3.3e-58 Score=375.40 Aligned_cols=240 Identities=63% Similarity=1.054 Sum_probs=233.0
Q ss_pred cccccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccccccCceEEEcCcEEEEEeCcHHH
Q psy1918 6 KFRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTAD 85 (251)
Q Consensus 6 ~~~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~~~~~Ki~~i~~~i~~~~sG~~~D 85 (251)
|||++||.++|+|||+|||+|||||++|++.|+++||+|+++.+||++-++..+.|.+.++|||+||+|++++++|+.+|
T Consensus 1 Mfrnqyd~d~t~wsPqGrl~QvEya~EavkqGsatVGLks~thaVLvAl~r~~seLss~QkKi~~iD~h~g~siAGLt~D 80 (264)
T KOG0863|consen 1 MFRNQYDNDVTTWSPQGRLHQVEYAMEAVKQGSATVGLKSRTHAVLVALKRAQSELSSHQKKIFKIDDHIGISIAGLTAD 80 (264)
T ss_pred CCcccccCceeEECCcceehHHHHHHHHHhcccceEeecccceEEEeeeccchhHHHHhhheeEecccccceEEeccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEE
Q psy1918 86 ARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMA 165 (251)
Q Consensus 86 ~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a 165 (251)
++.+.+++|.+|..+++.+++++++..+...|++.+|..||+.+.|||||.++++|+|+.|||||.++|+|++.+++..+
T Consensus 81 arvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G~hl~e~~Psg~v~e~~g~s 160 (264)
T KOG0863|consen 81 ARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESGPHLYEFCPSGNVFECKGMS 160 (264)
T ss_pred hHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCCceeEEEcCCccEEEEeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhhhh
Q psy1918 166 IGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEE 245 (251)
Q Consensus 166 ~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~~~ 245 (251)
+|+.++.++++||+++.+|++++.||++..++.||+..+..|..+.+.+++|+|+.++.+|+.++.+++.+++...++.+
T Consensus 161 IGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~pf~~~d~~~~~k~~~~~~~~~ 240 (264)
T KOG0863|consen 161 IGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEPFTILDQKDVAKYVDLFKKVD 240 (264)
T ss_pred cccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCceEeecHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999987766899999999999999999999999999987766443
No 10
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-57 Score=386.68 Aligned_cols=231 Identities=42% Similarity=0.677 Sum_probs=219.5
Q ss_pred ccCCCCceeecCCCcchhhchHHHHHhcC-CcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHH
Q psy1918 9 NQYDSDVTVWSPQGRLHQVEYAMEAVKQG-SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTA 84 (251)
Q Consensus 9 ~~yd~~~t~fsp~G~l~QvEya~~a~~~G-~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~ 84 (251)
.+||+.+|+|||+|+++|+|||.+++++| +|+|||+++||||||+|+|.++++. ++.+|||+|+|||+|++||+.+
T Consensus 1 ~~~~~~~~~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~a 80 (236)
T COG0638 1 AGYDRAITIFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAA 80 (236)
T ss_pred CCCcCcceeECCCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcH
Confidence 47999999999999999999999999886 9999999999999999999999964 4689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEE
Q psy1918 85 DARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAM 164 (251)
Q Consensus 85 D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~ 164 (251)
|++.+++++|.+++.|++.++++++++.+++++++.+|.|+++ +|||+|+++|||+|+++|+||++||+|++.++++.
T Consensus 81 Da~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~--~rP~gv~~iiaG~d~~~p~Ly~~Dp~G~~~~~~~~ 158 (236)
T COG0638 81 DAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS--GRPYGVSLLVAGVDDGGPRLYSTDPSGSYNEYKAT 158 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC--cccceEEEEEEEEcCCCCeEEEECCCCceeecCEE
Confidence 9999999999999999999999999999999999999999987 79999999999999878999999999999999999
Q ss_pred EEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhhh
Q psy1918 165 AIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGE 244 (251)
Q Consensus 165 a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~~ 244 (251)
|+|+|++.++++||+.|+ ++|++|||++++++||+.+++||. .++++++|++|+++.+++.+++++++.++.++.++
T Consensus 159 a~Gsgs~~a~~~Le~~y~--~~m~~eeai~la~~al~~a~~rd~-~s~~~~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~ 235 (236)
T COG0638 159 AIGSGSQFAYGFLEKEYR--EDLSLEEAIELAVKALRAAIERDA-ASGGGIEVAVITKDEGFRKLDGEEIKKLLDDLSEK 235 (236)
T ss_pred EEcCCcHHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHhccc-cCCCCeEEEEEEcCCCeEEcCHHHHHHHHHHHhhc
Confidence 999999999999999998 699999999999999999999996 67888899999996569999999999999888754
No 11
>KOG0183|consensus
Probab=100.00 E-value=2.9e-58 Score=372.14 Aligned_cols=234 Identities=37% Similarity=0.588 Sum_probs=222.4
Q ss_pred ccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHH
Q psy1918 9 NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADA 86 (251)
Q Consensus 9 ~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~ 86 (251)
++||+-+|+|||||+|||||||++|+++|+|+||++++|+|||+.+++...+|. +...||..+++|++|+++|+.+|+
T Consensus 2 srydraltvFSPDGhL~QVEYAqEAvrkGstaVgvrg~~~vvlgvEkkSv~~Lq~~r~~rkI~~ld~hV~mafaGl~aDA 81 (249)
T KOG0183|consen 2 SRYDRALTVFSPDGHLFQVEYAQEAVRKGSTAVGVRGNNCVVLGVEKKSVPKLQDERTVRKISMLDDHVVMAFAGLTADA 81 (249)
T ss_pred CccccceEEECCCCCEEeeHhHHHHHhcCceEEEeccCceEEEEEeecchhhhhhhhhhhhheeecceeeEEecCCCccc
Confidence 579999999999999999999999999999999999999999999999988886 468999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCC-CeEEEECCCCCeeeeeEEE
Q psy1918 87 RILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAG-PHIYQTCPSSNYYDVKAMA 165 (251)
Q Consensus 87 ~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~g-p~ly~id~~G~~~~~~~~a 165 (251)
+.+++.+|.+|++|++..+.|++++.++++|+.+.|.|||..|.||||++.+|+|||++| |+||..||+|.+++|++.|
T Consensus 82 rilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~a 161 (249)
T KOG0183|consen 82 RILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANA 161 (249)
T ss_pred eeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccc
Confidence 999999999999999999999999999999999999999999999999999999999876 9999999999999999999
Q ss_pred EcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhhhh
Q psy1918 166 IGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEE 245 (251)
Q Consensus 166 ~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~~~ 245 (251)
+|.++..+..+|||+|++.+-.+..+++++++++|.++.. ..+.++|++++.+.+.++.|+.++|+.++..++++.
T Consensus 162 iGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvq----s~~~nie~aVm~~~~~~~~l~~~~I~~~v~~ie~E~ 237 (249)
T KOG0183|consen 162 IGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQ----SGGKNIEVAVMKRRKDLKMLESEEIDDIVKEIEQEE 237 (249)
T ss_pred cccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhh----cCCCeeEEEEEecCCceeecCHHHHHHHHHHHHHHH
Confidence 9999999999999999875557889999999999999983 567899999999987799999999999999999765
Q ss_pred h
Q psy1918 246 R 246 (251)
Q Consensus 246 ~ 246 (251)
+
T Consensus 238 e 238 (249)
T KOG0183|consen 238 E 238 (249)
T ss_pred H
Confidence 4
No 12
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.2e-57 Score=381.33 Aligned_cols=208 Identities=42% Similarity=0.604 Sum_probs=200.5
Q ss_pred cCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHHH
Q psy1918 10 QYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADAR 87 (251)
Q Consensus 10 ~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~ 87 (251)
+||+++|+|||+|||+|+|||++|+++|+|+|||+++||||||+|++.+.++. ++.+||++|+++++|++||+.+|++
T Consensus 1 ~y~~~~~~fsp~G~l~Q~eya~~av~~G~t~igik~~dgvvla~d~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 80 (211)
T cd03756 1 GYDRAITVFSPDGRLYQVEYAREAVKRGTTALGIKCKEGVVLAVDKRITSKLVEPESIEKIYKIDDHVGAATSGLVADAR 80 (211)
T ss_pred CCCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEecCHHHHH
Confidence 69999999999999999999999999999999999999999999999987664 5789999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEc
Q psy1918 88 ILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIG 167 (251)
Q Consensus 88 ~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G 167 (251)
.+.+.++.+++.|+++++++++++.+++.|++.++.|+++++.|||+++++|+|||++||+||.+||.|++.+++++|+|
T Consensus 81 ~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~~~ly~vd~~G~~~~~~~~a~G 160 (211)
T cd03756 81 VLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYNEYKATAIG 160 (211)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCCCCEEEEECCCCCeeeeEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred CChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEe
Q psy1918 168 SRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVG 221 (251)
Q Consensus 168 ~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~ 221 (251)
++++.++++|++.|+ |+|+++||++++++||+.+.++| .++++++|++|+
T Consensus 161 ~g~~~~~~~Le~~~~--~~m~~~ea~~l~~~~l~~~~~~~--~~~~~~~v~ii~ 210 (211)
T cd03756 161 SGRQAVTEFLEKEYK--EDMSLEEAIELALKALYAALEEN--ETPENVEIAYVT 210 (211)
T ss_pred CCCHHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHhccc--CCCCcEEEEEEe
Confidence 999999999999999 79999999999999999998876 489999999986
No 13
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.7e-57 Score=382.56 Aligned_cols=209 Identities=33% Similarity=0.578 Sum_probs=197.8
Q ss_pred cCCCCceeecCCCcchhhchHHHHHhc-CCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHH
Q psy1918 10 QYDSDVTVWSPQGRLHQVEYAMEAVKQ-GSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADA 86 (251)
Q Consensus 10 ~yd~~~t~fsp~G~l~QvEya~~a~~~-G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~ 86 (251)
+||+++|+|||||||+|||||++|+++ |+|+|||+++||||||+|++.+.++. +..+|||+|+++++|++||+.+|+
T Consensus 1 ~yd~~~~~fsp~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~ 80 (215)
T cd03754 1 GFDRHITIFSPEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPSTVTHLFRITDEIGCVMTGMIADS 80 (215)
T ss_pred CCCCCCeeECCCCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccCCcccCceEEEcCCEEEEEEechhhH
Confidence 699999999999999999999999975 78999999999999999999988764 478899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEEE
Q psy1918 87 RILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMA 165 (251)
Q Consensus 87 ~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~a 165 (251)
+.+.+++|.++..|++.++++++++.+|+.+++++|.|+++++.|||++++||||||+ +||+||++||+|++.+++++|
T Consensus 81 ~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a 160 (215)
T cd03754 81 RSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATA 160 (215)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999995 789999999999999999999
Q ss_pred EcCChHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEE
Q psy1918 166 IGSRSQSARTYLEKRLADFPEA--SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLV 220 (251)
Q Consensus 166 ~G~g~~~a~~~L~~~~~~~~~~--s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii 220 (251)
+|++++.++++||++|++..+| |++||++++++||+.+.+|| .+++++||++|
T Consensus 161 ~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd--~~~~~~ei~~~ 215 (215)
T cd03754 161 AGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTD--FKATEIEVGVV 215 (215)
T ss_pred ECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhccc--CCCCcEEEEEC
Confidence 9999999999999999853357 99999999999999999998 46889999985
No 14
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.5e-57 Score=380.72 Aligned_cols=204 Identities=37% Similarity=0.624 Sum_probs=195.6
Q ss_pred CCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHHHH
Q psy1918 11 YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARI 88 (251)
Q Consensus 11 yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~ 88 (251)
||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.+..+. +..+||++|++|++|++||+.+|++.
T Consensus 1 ~d~~~~~fsp~Gr~~Qveya~~av~~G~t~Igik~~dgVvlaad~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (207)
T cd03755 1 YDRAITVFSPDGHLFQVEYAQEAVRKGTTAVGVRGKDCVVLGVEKKSVAKLQDPRTVRKICMLDDHVCLAFAGLTADARV 80 (207)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEeCCEEEEEEecCCCCcccCCCccCcEEEECCCEEEEEecchhhHHH
Confidence 8999999999999999999999999999999999999999999999877764 36899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEEEEc
Q psy1918 89 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIG 167 (251)
Q Consensus 89 l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~a~G 167 (251)
+.+.+|.+++.|++.++++++++.+++.+++.+|.|+++++.|||+++++|+|||+ +||+||.+||+|++.+++++|+|
T Consensus 81 l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G 160 (207)
T cd03755 81 LINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIG 160 (207)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEEC
Confidence 99999999999999999999999999999999999999999999999999999996 58999999999999999999999
Q ss_pred CChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEE
Q psy1918 168 SRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLV 220 (251)
Q Consensus 168 ~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii 220 (251)
+|+..++++||++|+ |+|+++||++++++||+.+.+ .+++++||+++
T Consensus 161 ~gs~~~~~~Le~~~~--~~ms~eeai~l~~~~l~~~~~----~~~~~~e~~~~ 207 (207)
T cd03755 161 RNSKTVREFLEKNYK--EEMTRDDTIKLAIKALLEVVQ----SGSKNIELAVM 207 (207)
T ss_pred CCCHHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHhC----CCCCeEEEEEC
Confidence 999999999999998 699999999999999999984 47889999985
No 15
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.6e-55 Score=372.16 Aligned_cols=206 Identities=37% Similarity=0.606 Sum_probs=195.8
Q ss_pred CCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHHHH
Q psy1918 11 YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARI 88 (251)
Q Consensus 11 yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~ 88 (251)
||.++|+|||||||+|||||++++++|+|+|||+++||||||+|++.++++. ++.+||++|+++++|++||+.+|++.
T Consensus 1 ~~~~~~~f~p~G~~~Q~eya~~a~~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (213)
T cd03753 1 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIKTKEGVVLAVEKRITSPLMEPSSVEKIMEIDDHIGCAMSGLIADART 80 (213)
T ss_pred CCCCCccCCCCCeEhHHHHHHHHHhcCCCEEEEEeCCEEEEEEecccCCcCcCCCccceEEEEcCCEEEEEecCHHHHHH
Confidence 8999999999999999999999999999999999999999999999987764 56899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcC-----CCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeE
Q psy1918 89 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY-----DKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKA 163 (251)
Q Consensus 89 l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~-----~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~ 163 (251)
+.+.+|.+++.|++.++++++++.+++.+++.++.|+++. ..|||+|++||+|||++||+||.+||.|++.++++
T Consensus 81 l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~gp~Ly~vd~~G~~~~~~~ 160 (213)
T cd03753 81 LIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENGPQLFHTDPSGTFTRCDA 160 (213)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCCCEEEEECCCCCeecccE
Confidence 9999999999999999999999999999999999998754 46999999999999999999999999999999999
Q ss_pred EEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEE
Q psy1918 164 MAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLV 220 (251)
Q Consensus 164 ~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii 220 (251)
+|+|++++.++++|+++|+ ++|+++||++++++||+.+..++ ++++++||++|
T Consensus 161 ~a~G~~~~~~~~~L~~~~~--~~ls~eeai~l~~~~l~~~~~~~--~~~~~~ei~~~ 213 (213)
T cd03753 161 KAIGSGSEGAQSSLQEKYH--KDMTLEEAEKLALSILKQVMEEK--LNSTNVELATV 213 (213)
T ss_pred EEECCCcHHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHhccc--CCCCcEEEEEC
Confidence 9999999999999999999 69999999999999999988765 68899999985
No 16
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=1.4e-55 Score=371.49 Aligned_cols=206 Identities=48% Similarity=0.772 Sum_probs=198.6
Q ss_pred CCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHHHH
Q psy1918 11 YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARI 88 (251)
Q Consensus 11 yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~ 88 (251)
||.++|+|||||||+|+|||++++++|+|+|||+++||||||+|++.+.++. ++.+|||+|+++++|++||..+|++.
T Consensus 1 ~~~~~~~f~~~G~~~q~eya~~~~~~G~tvigi~~~dgVvlaaD~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 80 (209)
T cd01911 1 YDRSITTFSPEGRLFQVEYALEAVKNGSTAVGIKGKDGVVLAVEKKVTSKLLDPSSVEKIFKIDDHIGCAVAGLTADARV 80 (209)
T ss_pred CCCCCccCCCCCEEeHHHHHHHHHHcCCCEEEEEECCEEEEEEEecCCccccCCcccceEEEecCCeEEEeccCcHhHHH
Confidence 8999999999999999999999999999999999999999999999988764 57899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCC-CCeEEEECCCCCeeeeeEEEEc
Q psy1918 89 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-GPHIYQTCPSSNYYDVKAMAIG 167 (251)
Q Consensus 89 l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~-gp~ly~id~~G~~~~~~~~a~G 167 (251)
+.+.++.++..|++.+|++++++.+|+++++.+|.|++++++|||+|+++|+|||++ ||+||.+||.|++.+++++++|
T Consensus 81 l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G 160 (209)
T cd01911 81 LVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIG 160 (209)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeC
Confidence 999999999999999999999999999999999999999999999999999999975 8999999999999999999999
Q ss_pred CChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEE
Q psy1918 168 SRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLV 220 (251)
Q Consensus 168 ~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii 220 (251)
+|+..++++|++.|+ |+|+++||++++++||+.+.+||. ++++++|+++
T Consensus 161 ~g~~~~~~~L~~~~~--~~ms~~ea~~l~~~~l~~~~~~d~--~~~~~~i~i~ 209 (209)
T cd01911 161 KGSQEAKTFLEKRYK--KDLTLEEAIKLALKALKEVLEEDK--KAKNIEIAVV 209 (209)
T ss_pred CCcHHHHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHhccC--CCCcEEEEEC
Confidence 999999999999999 799999999999999999999994 8889999875
No 17
>KOG0181|consensus
Probab=100.00 E-value=9e-56 Score=352.88 Aligned_cols=231 Identities=33% Similarity=0.580 Sum_probs=220.8
Q ss_pred cccccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCcccccc--ccCceEEEcCcEEEEEeCcH
Q psy1918 6 KFRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAA--HQKKIIVIDDHMGLSFAGLT 83 (251)
Q Consensus 6 ~~~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~~--~~~Ki~~i~~~i~~~~sG~~ 83 (251)
|-..+|..++|+|||+|||.|+|||+.|+.+|.+.|||+-.||||||++++..+.|.+ ...|+++|.++|+|.+||..
T Consensus 1 m~d~~y~fslTtFSpsGKL~QieyAL~Av~~G~~SvGi~A~nGvVlatekk~~s~L~~~~sv~KV~~i~~~IG~vYSGmg 80 (233)
T KOG0181|consen 1 MGDFGYSFSLTTFSPSGKLVQIEYALTAVVNGQTSVGIKAANGVVLATEKKDVSPLVDEESVRKVEKITPHIGCVYSGMG 80 (233)
T ss_pred CCCcccceeeEEEcCCCceehHHHHHHHHhCCCCceeeeecCceEEEeccCCCCccchhhhhhhHhhccCCcceEEecCC
Confidence 4567899999999999999999999999999999999999999999999998888864 67999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeE
Q psy1918 84 ADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKA 163 (251)
Q Consensus 84 ~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~ 163 (251)
+|++.+++..|+.++.|+..|++++|+..+...++..+|+|||..|.||||+++++||||+++|.||++||+|++..|++
T Consensus 81 pD~RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~~p~LyQvdPSGsyf~wka 160 (233)
T KOG0181|consen 81 PDYRVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEGGPLLYQVDPSGSYFAWKA 160 (233)
T ss_pred CceeehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCCceeEEEECCccceeehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHh
Q psy1918 164 MAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLI 241 (251)
Q Consensus 164 ~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~ 241 (251)
+|+|.+...++++||++|. +++.+++++..|+-+|++.++-+ ...+++||+++..++ |++|++.||+.+|..+
T Consensus 161 tA~Gkn~v~aktFlEkR~~--edleldd~ihtailtlkE~fege--~~~~nieigv~~~~~-F~~lt~~eI~d~l~~l 233 (233)
T KOG0181|consen 161 TAMGKNYVNAKTFLEKRYN--EDLELDDAIHTAILTLKESFEGE--MTAKNIEIGVCGENG-FRRLTPAEIEDYLASL 233 (233)
T ss_pred hhhccCcchHHHHHHHHhc--cccccchHHHHHHHHHHHHhccc--cccCceEEEEecCCc-eeecCHHHHHHHHhcC
Confidence 9999999999999999998 59999999999999999999765 688999999999775 9999999999998753
No 18
>KOG0178|consensus
Probab=100.00 E-value=4.9e-55 Score=352.54 Aligned_cols=238 Identities=33% Similarity=0.531 Sum_probs=223.9
Q ss_pred ccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHH
Q psy1918 9 NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTAD 85 (251)
Q Consensus 9 ~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D 85 (251)
..||+-.|+|||||||+|||||++++.+.+|+|||-++||||||++++.+++|. ...+||++|+|+++|+.+|+.+|
T Consensus 3 r~ydsrttiFspEGRLyQVEyAmeais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~D 82 (249)
T KOG0178|consen 3 RRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSD 82 (249)
T ss_pred cCcCCcccccCCCcchHHHHHHHHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEeccccc
Confidence 469999999999999999999999999999999999999999999999999986 36799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEE
Q psy1918 86 ARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAM 164 (251)
Q Consensus 86 ~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~ 164 (251)
+..+++.+|..+++|.+.+|+++|++.|+..|++..|.|||+.|.||||||++.+|||+ .|.+||..||+|++..|++.
T Consensus 83 AnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~ 162 (249)
T KOG0178|consen 83 ANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKAT 162 (249)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCcccccee
Confidence 99999999999999999999999999999999999999999999999999999999997 57999999999999999999
Q ss_pred EEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC---ceEEecHHHHHHHHHHh
Q psy1918 165 AIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ---KFKTLDERETGHYLSLI 241 (251)
Q Consensus 165 a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~---~~~~l~~~ei~~~l~~~ 241 (251)
++|..+..|+..|+.-|++ ..++++||..+|++.|...++.+. +..+.+||+.++++. .+++++++||.++|.++
T Consensus 163 ciG~N~~Aa~s~Lkqdykd-d~~~~~eA~~laikvL~kt~d~~~-lt~eklEia~~~k~~~k~v~~i~~~~ev~kll~k~ 240 (249)
T KOG0178|consen 163 CIGANSGAAQSMLKQDYKD-DENDLEEAKALAIKVLSKTLDSGS-LTAEKLEIATITKDCNKTVLKILKKDEVLKLLEKY 240 (249)
T ss_pred eeccchHHHHHHHHhhhcc-ccccHHHHHHHHHHHHHhhcccCC-CChhheEEEEEEecCCceEEEecCHHHHHHHHHHh
Confidence 9999999999999999986 456799999999999999998874 788999999999864 47899999999999998
Q ss_pred hhhhhcc
Q psy1918 242 EGEERRG 248 (251)
Q Consensus 242 ~~~~~~~ 248 (251)
.+.++.+
T Consensus 241 ~~~~~~~ 247 (249)
T KOG0178|consen 241 HETQRQA 247 (249)
T ss_pred hhhhhhc
Confidence 8766544
No 19
>KOG0182|consensus
Probab=100.00 E-value=7.8e-55 Score=351.63 Aligned_cols=237 Identities=31% Similarity=0.521 Sum_probs=225.0
Q ss_pred ccccCCCCceeecCCCcchhhchHHHHHhc-CCcEEEeeeCCeEEEEEeccCcccccc--ccCceEEEcCcEEEEEeCcH
Q psy1918 7 FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQ-GSATVGLKNKTHAVIIALKRAASELAA--HQKKIIVIDDHMGLSFAGLT 83 (251)
Q Consensus 7 ~~~~yd~~~t~fsp~G~l~QvEya~~a~~~-G~tvigi~~~dgVvla~d~~~~~~l~~--~~~Ki~~i~~~i~~~~sG~~ 83 (251)
+..+||+++|||||||||+|||||+||+++ |-|+||++++|++|+++.++.+.+|.+ ....+|+|..+++|+++|..
T Consensus 5 s~agfDrhitIFspeGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~~tvt~~f~itk~ig~v~tG~~ 84 (246)
T KOG0182|consen 5 SSAGFDRHITIFSPEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSSTVTHLFRITKKIGCVITGMI 84 (246)
T ss_pred CcCCccceEEEECCCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCcccccccccceeEEEeeccceEEEecCC
Confidence 478999999999999999999999999998 789999999999999999999999974 57999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeee
Q psy1918 84 ADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVK 162 (251)
Q Consensus 84 ~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~ 162 (251)
+|++..+.++|.++.++++.||.+||++-|++.+++..|.|||+..|||+||.+++.|+|+ .||.||.+||.|.+..++
T Consensus 85 aDar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~k 164 (246)
T KOG0182|consen 85 ADARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFK 164 (246)
T ss_pred cchHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCccccccce
Confidence 9999999999999999999999999999999999999999999999999999999999986 689999999999999999
Q ss_pred EEEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCc-eEEecHHHHHHHHHHh
Q psy1918 163 AMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQK-FKTLDERETGHYLSLI 241 (251)
Q Consensus 163 ~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~-~~~l~~~ei~~~l~~~ 241 (251)
++|.|.....+..+||++|++..++|.+|++++++.||..++.-|. ..+++||++++.+.+ |++|+.+||+.+|+.|
T Consensus 165 AtaaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Df--k~se~EVgvv~~~~p~f~~Ls~~eie~hL~~I 242 (246)
T KOG0182|consen 165 ATAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGIDF--KSSELEVGVVTVDNPEFRILSAEEIEEHLQAI 242 (246)
T ss_pred eeecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhccc--CCcceEEEEEEcCCcceeeccHHHHHHHHHHh
Confidence 9999999999999999999965568899999999999999998884 677999999998765 9999999999999999
Q ss_pred hhhh
Q psy1918 242 EGEE 245 (251)
Q Consensus 242 ~~~~ 245 (251)
.+.|
T Consensus 243 AEkd 246 (246)
T KOG0182|consen 243 AEKD 246 (246)
T ss_pred hhcC
Confidence 8764
No 20
>KOG0184|consensus
Probab=100.00 E-value=7.1e-54 Score=348.29 Aligned_cols=232 Identities=29% Similarity=0.442 Sum_probs=209.0
Q ss_pred cccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHH
Q psy1918 8 RNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTAD 85 (251)
Q Consensus 8 ~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D 85 (251)
-++||...++|||+||+||+|||+||+.+|+|+||||||||||+++|+..+++|+ ....|||.|++||+|+++|+.+|
T Consensus 5 GtGyDls~s~fSpdGrvfQveYA~KAven~~T~IGIk~kdGVVl~vEKli~SkLy~p~sn~ri~~V~r~iG~avaGl~~D 84 (254)
T KOG0184|consen 5 GTGYDLSASTFSPDGRVFQVEYAQKAVENSGTCIGIKCKDGVVLAVEKLITSKLYEPGSNERIFSVDRHIGMAVAGLIPD 84 (254)
T ss_pred cccccccceeeCCCCceehHHHHHHHHhcCCcEEEEecCCeEEEEEeeeecccccccCCCCceEeecccccEEEeccccc
Confidence 5789999999999999999999999999999999999999999999999999986 47789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEE
Q psy1918 86 ARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMA 165 (251)
Q Consensus 86 ~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a 165 (251)
.+.+..++|.++.+|+.+|+.++|...++..++.+.|.||.++..||||++.++++||++||+||.++|+|..+.++.+|
T Consensus 85 g~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~g~~LymiepSG~~~~Y~~aa 164 (254)
T KOG0184|consen 85 GRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDDEGPQLYMIEPSGSSYGYKGAA 164 (254)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeCCCceEEEEcCCCCccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecC-CceEEecHHHHHHHHHHhh
Q psy1918 166 IGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQN-QKFKTLDERETGHYLSLIE 242 (251)
Q Consensus 166 ~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~-~~~~~l~~~ei~~~l~~~~ 242 (251)
+|.|.+.|++.|||+-- .+|+.+|+++.+.+.++.+.+.. +-..-.+||.++..+ ++.+..-|.|+.+...+.+
T Consensus 165 iGKgrq~aKtElEKL~~--~~mt~~e~VkeaakIiY~~HDe~-KdK~feiEm~wvg~eTnG~h~~vp~el~~ea~~~a 239 (254)
T KOG0184|consen 165 IGKGRQAAKTELEKLKI--DEMTCKELVKEAAKIIYKVHDEN-KDKEFEIEMGWVGEETNGLHEKVPSELLEEAEKYA 239 (254)
T ss_pred ccchhHHHHHHHHhccc--ccccHHHHHHHHHheeEeecccc-cCcceEEEEEEEEeecCCccccCcHHHHHHHHHHH
Confidence 99999999999999843 58999999999999999887532 223336888999864 3344444556655544444
No 21
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=2.6e-46 Score=321.67 Aligned_cols=206 Identities=19% Similarity=0.262 Sum_probs=191.9
Q ss_pred HHhcCCcEEEeeeCCeEEEEEeccCccc-cc--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy1918 33 AVKQGSATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLP 109 (251)
Q Consensus 33 a~~~G~tvigi~~~dgVvla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~ 109 (251)
.+.+|+|+|||+++||||||+|++.+++ +. ++.+|||+|++|++|++||+.+|++.+.+++|.+++.|++.+|++++
T Consensus 35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~is 114 (247)
T PTZ00488 35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELIS 114 (247)
T ss_pred ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 4578999999999999999999999875 33 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCcce--eeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCC
Q psy1918 110 VFRLISIVGNKMQVCTQRYDKRPYG--VGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA 187 (251)
Q Consensus 110 ~~~la~~l~~~~~~yt~~~~~rP~~--v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~ 187 (251)
++.+|++|+++++.+ ||++ +++||||||++||+||++||+|++.+++++|+|+|+..++++||+.|+ ++|
T Consensus 115 v~~la~~ls~~l~~~------R~~~~~v~~iiaG~D~~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k--~dm 186 (247)
T PTZ00488 115 VAAASKILANIVWNY------KGMGLSMGTMICGWDKKGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFK--WDL 186 (247)
T ss_pred HHHHHHHHHHHHHhc------CCCCeeEEEEEEEEeCCCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCc--CCC
Confidence 999999999998544 5555 558999999989999999999999999999999999999999999999 699
Q ss_pred CHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhhhhhcc
Q psy1918 188 SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEERRG 248 (251)
Q Consensus 188 s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~~~~~~ 248 (251)
|.+||++++++||+.+.+||. .++++++|++|+++| ++.++++||+++|+.+++++|..
T Consensus 187 s~eEai~l~~kal~~~~~Rd~-~sg~~~ei~iI~k~g-~~~l~~~ei~~~l~~~~~~~~~~ 245 (247)
T PTZ00488 187 NDEEAQDLGRRAIYHATFRDA-YSGGAINLYHMQKDG-WKKISADDCFDLHQKYAAEKEIN 245 (247)
T ss_pred CHHHHHHHHHHHHHHHHHhcc-ccCCCeEEEEEcCCc-cEECCHHHHHHHHHHHhhhcccC
Confidence 999999999999999999996 899999999999886 99999999999999999888764
No 22
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=1e-45 Score=314.47 Aligned_cols=203 Identities=16% Similarity=0.222 Sum_probs=184.8
Q ss_pred hchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccccccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcC-
Q psy1918 27 VEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHK- 105 (251)
Q Consensus 27 vEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~- 105 (251)
-|||++|+++|+|+|||+++||||||+|++. +..+|||+|+||++|+++|+.+|++.+++.++.+++.|++.++
T Consensus 17 ~EYA~kav~~g~T~VGIk~kdgVVLaaek~~-----~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~ 91 (228)
T TIGR03691 17 AELARKGIARGRSVVVLTYADGILFVAENPS-----RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDR 91 (228)
T ss_pred HHHHHHHHHcCCcEEEEEeCCeEEEEEecCC-----CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 4899999999999999999999999999962 4678999999999999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC--CCCeEEEECCCCCeeeee-EEEEcCChHHHHHHHHHhhc
Q psy1918 106 DTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD--AGPHIYQTCPSSNYYDVK-AMAIGSRSQSARTYLEKRLA 182 (251)
Q Consensus 106 ~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~--~gp~ly~id~~G~~~~~~-~~a~G~g~~~a~~~L~~~~~ 182 (251)
.+++++.+|+.+++.++.++ +++.|||+|++|++|||+ .||+||++||+|++.+++ ++|+|++++.++++||++|+
T Consensus 92 ~~~~v~~la~~~tq~~~~~~-~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y~ 170 (228)
T TIGR03691 92 RDVTGRGLANAYAQTLGTIF-TEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKESYR 170 (228)
T ss_pred CCccHHHHHHHHHhhccccc-ccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHhcC
Confidence 68999999988877776666 556799999999999984 689999999999999976 89999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHhhC--CCCCCCCCCeEEEEEEecCC---ceEEecHHHHHHHH
Q psy1918 183 DFPEASLEEIVKHGLRALRDTL--PNDSELTTKNVSIGLVGQNQ---KFKTLDERETGHYL 238 (251)
Q Consensus 183 ~~~~~s~~ea~~~~~~al~~~~--~~d~~~~~~~iei~ii~~~~---~~~~l~~~ei~~~l 238 (251)
++|+++||++++++||+.++ +++. +++.++||++|++++ .|++|+++||+++|
T Consensus 171 --~~ms~eeai~la~~aL~~~~~~~r~~-~~~~~iEv~ii~k~~~~~~f~~l~~~ei~~~l 228 (228)
T TIGR03691 171 --DGLSLADALGLAVQALRAGGNGEKRE-LDAASLEVAVLDRSRPRRAFRRITGEALERLL 228 (228)
T ss_pred --CCCCHHHHHHHHHHHHHHHhcccccc-CCccceEEEEEeCCCCccceEECCHHHHHhhC
Confidence 69999999999999999995 4553 789999999999653 49999999999875
No 23
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=1.4e-45 Score=312.59 Aligned_cols=205 Identities=20% Similarity=0.220 Sum_probs=187.8
Q ss_pred cCCcEEEeeeCCeEEEEEeccCccc-cc--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHH
Q psy1918 36 QGSATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFR 112 (251)
Q Consensus 36 ~G~tvigi~~~dgVvla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~ 112 (251)
+|+|+|||+++||||||+|++.+++ +. ++.+|||+|++|++|++||..+|++.+.+++|.+++.|++.++++++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4899999999999999999999984 43 47899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC--CCCeEEEECCCC-CeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCH
Q psy1918 113 LISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD--AGPHIYQTCPSS-NYYDVKAMAIGSRSQSARTYLEKRLADFPEASL 189 (251)
Q Consensus 113 la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~--~gp~ly~id~~G-~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~ 189 (251)
++++|++++|.++. ..+|||++++||||||+ ++|+||++||+| ++..++++|+|+|+..++++||++|+ ++||.
T Consensus 81 la~~ls~~~~~~~~-~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~--~~ms~ 157 (219)
T TIGR03690 81 KANRLAAMVRGNLP-AAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYS--PDLDE 157 (219)
T ss_pred HHHHHHHHHHhhhh-hccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCC--CCcCH
Confidence 99999999988774 45899999999999995 579999999999 57777999999999999999999998 69999
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCe-------EEEEEEecCCceEEecHHHHHHHHHHhhhhh
Q psy1918 190 EEIVKHGLRALRDTLPNDSELTTKN-------VSIGLVGQNQKFKTLDERETGHYLSLIEGEE 245 (251)
Q Consensus 190 ~ea~~~~~~al~~~~~~d~~~~~~~-------iei~ii~~~~~~~~l~~~ei~~~l~~~~~~~ 245 (251)
+||++++++||+.+.+||. .+++. ++|++|+++| |+.|+++||+.+++.+++.+
T Consensus 158 eeai~l~~~al~~~~~~d~-~s~~~~~~~~~~~ei~ii~~~g-~~~l~~~ei~~~~~~~~~~~ 218 (219)
T TIGR03690 158 DDALRVAVEALYDAADDDS-ATGGPDLVRGIYPTVVVITADG-ARRVPESELEELARAIVESR 218 (219)
T ss_pred HHHHHHHHHHHHHHHhccc-ccCCcccccccccEEEEEccCc-eEEcCHHHHHHHHHHHHhcc
Confidence 9999999999999999985 44543 3999998775 99999999999999988765
No 24
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-44 Score=301.28 Aligned_cols=186 Identities=20% Similarity=0.322 Sum_probs=175.2
Q ss_pred CcEEEeeeCCeEEEEEeccCcccc-c--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918 38 SATVGLKNKTHAVIIALKRAASEL-A--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 114 (251)
Q Consensus 38 ~tvigi~~~dgVvla~d~~~~~~l-~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la 114 (251)
+|+|||+++||||||+|++.+++. . ++.+|||+|+++++|++||..+|++.+.+++|.+++.|++.++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 689999999999999999998764 3 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHH
Q psy1918 115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV 193 (251)
Q Consensus 115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~ 193 (251)
+++++.+|.|+++. |||++++||+|||+ .||+||++||+|++.+++++|+|+|+..++++||+.|+ |+||++||+
T Consensus 82 ~~l~~~~~~~~~~~--rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~--~~ms~eeai 157 (193)
T cd03758 82 NFTRRELAESLRSR--TPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYK--PDMTVEEAL 157 (193)
T ss_pred HHHHHHHHHHhhcC--CCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccC--CCCCHHHHH
Confidence 99999999887653 89999999999996 78999999999999999999999999999999999998 799999999
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEe
Q psy1918 194 KHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTL 229 (251)
Q Consensus 194 ~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l 229 (251)
+++++||+.+.+||+ .++++++|++|+++| ++.+
T Consensus 158 ~l~~~a~~~~~~rd~-~~~~~i~i~ii~~~g-~~~~ 191 (193)
T cd03758 158 ELMKKCIKELKKRFI-INLPNFTVKVVDKDG-IRDL 191 (193)
T ss_pred HHHHHHHHHHHHhcc-ccCCceEEEEEcCCC-eEeC
Confidence 999999999999996 899999999999987 6653
No 25
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-44 Score=302.58 Aligned_cols=189 Identities=19% Similarity=0.198 Sum_probs=175.0
Q ss_pred cCCcEEEeeeCCeEEEEEeccCccc-cc--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHH-HHhhhcCCCCCHH
Q psy1918 36 QGSATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECL-NYKYAHKDTLPVF 111 (251)
Q Consensus 36 ~G~tvigi~~~dgVvla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~-~~~~~~~~~i~~~ 111 (251)
+|+|+|||+++||||||+|++.+++ +. ++.+|||+|+++++|+++|+.+|++.+++++|.+++ .+++.++.+++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 5899999999999999999999854 43 578999999999999999999999999999999987 4667899999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHH
Q psy1918 112 RLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLE 190 (251)
Q Consensus 112 ~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ 190 (251)
.+++++++.+ |+++++.|||++++|+||||+ +||+||++||.|++.+++++|+|+|+.+++++||+.|+++++||++
T Consensus 81 ~la~~i~~~~--y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~e 158 (197)
T cd03760 81 EIHSYLTRVL--YNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEE 158 (197)
T ss_pred HHHHHHHHHH--HHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHH
Confidence 9999999986 899988999999999999996 7899999999999999999999999999999999999833499999
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEE
Q psy1918 191 EIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKT 228 (251)
Q Consensus 191 ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~ 228 (251)
||++++++||+.+.+||. .++++++|++|+++| +++
T Consensus 159 ea~~l~~~~l~~~~~rd~-~~~~~~~i~ii~~~g-~~~ 194 (197)
T cd03760 159 EARALIEECMKVLYYRDA-RSINKYQIAVVTKEG-VEI 194 (197)
T ss_pred HHHHHHHHHHHHHHHhcc-ccCCceEEEEECCCC-EEe
Confidence 999999999999999996 799999999999986 554
No 26
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-44 Score=301.33 Aligned_cols=182 Identities=20% Similarity=0.280 Sum_probs=172.0
Q ss_pred cCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHH
Q psy1918 36 QGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFR 112 (251)
Q Consensus 36 ~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~ 112 (251)
+|+|+|||+++||||||+|++.++++. ++.+|||+|++|++|++||..+|++.+.+.+|.+++.|++.++++++++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 699999999999999999999999874 36799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeee-EEEEcCChHHHHHHHHHhhcCCCCCCHH
Q psy1918 113 LISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVK-AMAIGSRSQSARTYLEKRLADFPEASLE 190 (251)
Q Consensus 113 la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~-~~a~G~g~~~a~~~L~~~~~~~~~~s~~ 190 (251)
+|++|++.+ |+++. |||++++||||||+ +||+||++||+|++..++ ++|+|+|++.++++||+.|+ |+||++
T Consensus 82 la~~l~~~l--y~~r~--~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~--~~~s~~ 155 (195)
T cd03759 82 FSSLISSLL--YEKRF--GPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWR--PDMEPD 155 (195)
T ss_pred HHHHHHHHH--HHhcC--CCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccC--CCCCHH
Confidence 999999998 77763 79999999999995 569999999999998887 99999999999999999998 699999
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC
Q psy1918 191 EIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ 224 (251)
Q Consensus 191 ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~ 224 (251)
||++++++||+.+.+||. .++++++|++|+++|
T Consensus 156 ea~~l~~~~l~~~~~rd~-~~~~~~~i~ii~~~g 188 (195)
T cd03759 156 ELFETISQALLSAVDRDA-LSGWGAVVYIITKDK 188 (195)
T ss_pred HHHHHHHHHHHHHHhhCc-ccCCceEEEEEcCCc
Confidence 999999999999999996 799999999999987
No 27
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.2e-44 Score=297.71 Aligned_cols=184 Identities=21% Similarity=0.300 Sum_probs=173.7
Q ss_pred CcEEEeeeCCeEEEEEeccCcccc-c--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918 38 SATVGLKNKTHAVIIALKRAASEL-A--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 114 (251)
Q Consensus 38 ~tvigi~~~dgVvla~d~~~~~~l-~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la 114 (251)
+|+|||+++||||||+|++.+++. . ++.+|||+|++|++|+++|+.+|++.+.+++|.+++.|++.++++++++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 589999999999999999999964 3 4789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHH
Q psy1918 115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK 194 (251)
Q Consensus 115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~ 194 (251)
+++++.+|.|++ .||+++++|||||++||+||++||+|++.+++++|+|+|++.++++||+.|+ |+||.+||++
T Consensus 81 ~~ls~~l~~~~~----~~~~v~~li~G~D~~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~--~~~s~eea~~ 154 (188)
T cd03761 81 KLLSNMLYQYKG----MGLSMGTMICGWDKTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYR--YDLSVEEAYD 154 (188)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEeCCCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCC--CCCCHHHHHH
Confidence 999999988754 3899999999999999999999999999999999999999999999999999 6999999999
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEe
Q psy1918 195 HGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTL 229 (251)
Q Consensus 195 ~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l 229 (251)
++++||+.+.+||. .++++++|++|+++| ++.+
T Consensus 155 l~~~~l~~~~~rd~-~sg~~~~v~ii~~~g-~~~~ 187 (188)
T cd03761 155 LARRAIYHATHRDA-YSGGNVNLYHVREDG-WRKI 187 (188)
T ss_pred HHHHHHHHHHHhcc-cCCCCeEEEEEcCCc-eEEc
Confidence 99999999999996 899999999999886 6554
No 28
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.6e-43 Score=298.70 Aligned_cols=186 Identities=22% Similarity=0.314 Sum_probs=174.3
Q ss_pred HhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCH
Q psy1918 34 VKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPV 110 (251)
Q Consensus 34 ~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~ 110 (251)
+++|+|+|||+++||||||+|++.++++. ++.+|||+|+++++||+||..+|++.+.+.+|.+++.|++.+|+++++
T Consensus 5 ~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~ 84 (212)
T cd03757 5 TDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMST 84 (212)
T ss_pred cCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCH
Confidence 46899999999999999999999999873 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcC------
Q psy1918 111 FRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLAD------ 183 (251)
Q Consensus 111 ~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~------ 183 (251)
+.+++++++.+ |++|. |||++++||||||+ ++|+||.+||.|++.+++++|+|+|+.+++++||+.|++
T Consensus 85 ~~la~~ls~~l--y~~R~--~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~ 160 (212)
T cd03757 85 EAIAQLLSTIL--YSRRF--FPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNV 160 (212)
T ss_pred HHHHHHHHHHH--HhhcC--CCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcC
Confidence 99999999999 66553 79999999999996 469999999999999999999999999999999999851
Q ss_pred -CCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC
Q psy1918 184 -FPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ 224 (251)
Q Consensus 184 -~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~ 224 (251)
.++||++||++++++||+.+.+||. .++++++|++|+++|
T Consensus 161 ~~~~ms~eea~~l~~~~l~~~~~rd~-~sg~~i~i~iit~~g 201 (212)
T cd03757 161 ERTPLSLEEAVSLVKDAFTSAAERDI-YTGDSLEIVIITKDG 201 (212)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCc-ccCCCEEEEEEcCCC
Confidence 2699999999999999999999996 799999999999997
No 29
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=3.2e-43 Score=290.92 Aligned_cols=181 Identities=29% Similarity=0.447 Sum_probs=171.8
Q ss_pred CCcEEEeeeCCeEEEEEeccCcccc-c--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHH
Q psy1918 37 GSATVGLKNKTHAVIIALKRAASEL-A--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRL 113 (251)
Q Consensus 37 G~tvigi~~~dgVvla~d~~~~~~l-~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~l 113 (251)
|+|+|||+++||||||+|++.+++. . ++.+|||+|+++++|++||..+|++.+.++++.+++.|+..++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 7899999999999999999998653 2 578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHH
Q psy1918 114 ISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV 193 (251)
Q Consensus 114 a~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~ 193 (251)
++++++.+|.+ ..|||+++++|||||++||+||.+||.|++.+++++|+|+++..++++|++.|+ ++||++||+
T Consensus 81 a~~l~~~~~~~----~~rP~~v~~ivaG~d~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~--~~~s~~ea~ 154 (185)
T TIGR03634 81 ATLLSNILNSN----RFFPFIVQLLVGGVDEEGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYR--EDMSVEEAK 154 (185)
T ss_pred HHHHHHHHHhc----CCCCeEEEEEEEEEeCCCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCC--CCCCHHHHH
Confidence 99999999655 468999999999999999999999999999999999999999999999999998 699999999
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEEEEecCC
Q psy1918 194 KHGLRALRDTLPNDSELTTKNVSIGLVGQNQ 224 (251)
Q Consensus 194 ~~~~~al~~~~~~d~~~~~~~iei~ii~~~~ 224 (251)
+++++||+.+.+||. .++++++|++|+++|
T Consensus 155 ~l~~~~l~~~~~r~~-~~~~~~~v~ii~~~g 184 (185)
T TIGR03634 155 KLAVRAIKSAIERDV-ASGNGIDVAVITKDG 184 (185)
T ss_pred HHHHHHHHHHHHhcc-cCCCCEEEEEEcCCC
Confidence 999999999999996 799999999999886
No 30
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-42 Score=288.78 Aligned_cols=184 Identities=22% Similarity=0.271 Sum_probs=172.6
Q ss_pred CcEEEeeeCCeEEEEEeccCcccc-c--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918 38 SATVGLKNKTHAVIIALKRAASEL-A--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 114 (251)
Q Consensus 38 ~tvigi~~~dgVvla~d~~~~~~l-~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la 114 (251)
+|+|||+++||||||+|++.+++. . ++.+|||+|+++++|++||..+|++.+.+.++.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 589999999999999999999974 2 4789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHH
Q psy1918 115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK 194 (251)
Q Consensus 115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~ 194 (251)
+++++.++.|. .||+|++||||||++||+||.+||.|++.+++++|+|+++..++++|+++|+ |+||++||++
T Consensus 81 ~~l~~~l~~~~-----~p~~v~~ivaG~d~~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~--~~ls~~ea~~ 153 (189)
T cd03763 81 TMLKQHLFRYQ-----GHIGAALVLGGVDYTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYK--PDMTEEEAKK 153 (189)
T ss_pred HHHHHHHHHcC-----CccceeEEEEeEcCCCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcC--CCCCHHHHHH
Confidence 99999986552 3999999999999889999999999999999999999999999999999998 7999999999
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEec
Q psy1918 195 HGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLD 230 (251)
Q Consensus 195 ~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~ 230 (251)
++++||+.+.+||. .++++++|++|+++| +++..
T Consensus 154 l~~~~l~~~~~rd~-~~~~~~~v~ii~~~g-~~~~~ 187 (189)
T cd03763 154 LVCEAIEAGIFNDL-GSGSNVDLCVITKDG-VEYLR 187 (189)
T ss_pred HHHHHHHHHHHhcC-cCCCceEEEEEcCCc-EEEec
Confidence 99999999999996 789999999999987 66554
No 31
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-42 Score=287.63 Aligned_cols=185 Identities=29% Similarity=0.455 Sum_probs=174.1
Q ss_pred CcEEEeeeCCeEEEEEeccCcccc-c--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918 38 SATVGLKNKTHAVIIALKRAASEL-A--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 114 (251)
Q Consensus 38 ~tvigi~~~dgVvla~d~~~~~~l-~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la 114 (251)
+|+|||+++||||||+|++.+++. . ++.+||++|+++++++++|..+|++.+.+.++.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 589999999999999999999864 3 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHH
Q psy1918 115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK 194 (251)
Q Consensus 115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~ 194 (251)
+++++.++.+ ..|||++++||||||++||+||.+||.|++.+++++|+|+|++.++++|++.|+ ++|+++||++
T Consensus 81 ~~i~~~~~~~----~~~P~~~~~lvaG~d~~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~--~~~~~~ea~~ 154 (188)
T cd03764 81 TLLSNILNSS----KYFPYIVQLLIGGVDEEGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYK--EDMTVEEAKK 154 (188)
T ss_pred HHHHHHHHhc----CCCCcEEEEEEEEEeCCCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCC--CCCCHHHHHH
Confidence 9999999654 358999999999999888999999999999999999999999999999999998 6999999999
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEec
Q psy1918 195 HGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLD 230 (251)
Q Consensus 195 ~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~ 230 (251)
++++||+.+.+||. .++++++|++|+++| +++|+
T Consensus 155 l~~~~l~~~~~rd~-~~~~~i~i~iv~~~g-~~~~~ 188 (188)
T cd03764 155 LAIRAIKSAIERDS-ASGDGIDVVVITKDG-YKELE 188 (188)
T ss_pred HHHHHHHHHHhhcC-CCCCcEEEEEECCCC-eEeCC
Confidence 99999999999996 799999999999987 88763
No 32
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1e-41 Score=282.56 Aligned_cols=179 Identities=18% Similarity=0.206 Sum_probs=169.3
Q ss_pred CcEEEeeeCCeEEEEEeccCcccc-c--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918 38 SATVGLKNKTHAVIIALKRAASEL-A--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 114 (251)
Q Consensus 38 ~tvigi~~~dgVvla~d~~~~~~l-~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la 114 (251)
+|+|||+++||||||+|++.+++. . ++.+|||+|+++++|++||..+|++.+.+.++.+++.|++.++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 589999999999999999999964 2 4789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHH
Q psy1918 115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV 193 (251)
Q Consensus 115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~ 193 (251)
+++++.++.++ |||++++||||||+ +||+||.+||.|++.+++++++|+++..++++|++.|+ ++|+++||+
T Consensus 81 ~~l~~~~~~~~-----~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~--~~~s~~ea~ 153 (188)
T cd03762 81 SLFKNLCYNYK-----EMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYK--PGMTLEECI 153 (188)
T ss_pred HHHHHHHHhcc-----ccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCC--CCCCHHHHH
Confidence 99999986553 69999999999996 78999999999999999999999999999999999998 699999999
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEEEEecCC
Q psy1918 194 KHGLRALRDTLPNDSELTTKNVSIGLVGQNQ 224 (251)
Q Consensus 194 ~~~~~al~~~~~~d~~~~~~~iei~ii~~~~ 224 (251)
+++++||+.+.+||+ .++++++|++|+++|
T Consensus 154 ~l~~~al~~~~~rd~-~~~~~~~i~~i~~~g 183 (188)
T cd03762 154 KFVKNALSLAMSRDG-SSGGVIRLVIITKDG 183 (188)
T ss_pred HHHHHHHHHHHHhcc-ccCCCEEEEEECCCC
Confidence 999999999999996 799999999999987
No 33
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.1e-42 Score=290.80 Aligned_cols=182 Identities=16% Similarity=0.289 Sum_probs=167.6
Q ss_pred cEEEeeeCCeEEEEEeccCccccc--cccCceEEEc----CcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCC-CCCHH
Q psy1918 39 ATVGLKNKTHAVIIALKRAASELA--AHQKKIIVID----DHMGLSFAGLTADARILARFMRMECLNYKYAHKD-TLPVF 111 (251)
Q Consensus 39 tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~-~i~~~ 111 (251)
=+|||+++||||||+|++.++++. ++.+|||+|+ +|++|+.||+.+|++.+++++|.+++.|++.+|+ +++++
T Consensus 2 ~~vGIk~kdGVVLaadkr~~~~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v~ 81 (236)
T cd03765 2 YCLGIKLDAGLVFASDSRTNAGVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTMF 81 (236)
T ss_pred eEEEEEeCCeEEEEEccCccCCCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCHH
Confidence 479999999999999999998864 4689999998 8999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHH-HhhhcCC-----CCcceeeeeEEEEe-CCCCeEEEECCCCCeeee----eEEEEcCChHHHHHHHHHh
Q psy1918 112 RLISIVGNKMQ-VCTQRYD-----KRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDV----KAMAIGSRSQSARTYLEKR 180 (251)
Q Consensus 112 ~la~~l~~~~~-~yt~~~~-----~rP~~v~~iv~G~d-~~gp~ly~id~~G~~~~~----~~~a~G~g~~~a~~~L~~~ 180 (251)
.+|+++++.++ .++++.+ .|||+|++||+||| ++||+||++||+|++.++ +++|+|. +..++++||++
T Consensus 82 ~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek~ 160 (236)
T cd03765 82 DAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDRV 160 (236)
T ss_pred HHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHHh
Confidence 99999999854 4555554 38999999999998 578999999999999999 4689996 79999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC
Q psy1918 181 LADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ 224 (251)
Q Consensus 181 ~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~ 224 (251)
|+ ++||++||++++++||..++.||. .++++|+|++|+++|
T Consensus 161 yk--~~ms~eeai~la~~al~~a~~rd~-~sg~~iev~vI~k~G 201 (236)
T cd03765 161 IT--PDTSLEDAAKCALVSMDSTMRSNL-SVGPPLDLLVYERDS 201 (236)
T ss_pred cC--CCCCHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEECCC
Confidence 99 699999999999999999999996 899999999999997
No 34
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=2.4e-41 Score=280.12 Aligned_cols=184 Identities=37% Similarity=0.609 Sum_probs=174.3
Q ss_pred HhcCCcEEEeeeCCeEEEEEeccCccc--c-ccc-cCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy1918 34 VKQGSATVGLKNKTHAVIIALKRAASE--L-AAH-QKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLP 109 (251)
Q Consensus 34 ~~~G~tvigi~~~dgVvla~d~~~~~~--l-~~~-~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~ 109 (251)
+++|+|+|||+++||||||+|++.+.+ + .++ .+|||+|++++++++||..+|++.+.++++.++..|++.++.+++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 578999999999999999999999955 3 234 699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCC-CeEEEECCCCCeeee-eEEEEcCChHHHHHHHHHhhcCCCCC
Q psy1918 110 VFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAG-PHIYQTCPSSNYYDV-KAMAIGSRSQSARTYLEKRLADFPEA 187 (251)
Q Consensus 110 ~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~g-p~ly~id~~G~~~~~-~~~a~G~g~~~a~~~L~~~~~~~~~~ 187 (251)
++.+++.+++.++.++++.++||+++++++||||+++ |+||.+||.|++.++ +++|+|+|++.++++|++.|+ ++|
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~--~~~ 158 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYK--PDL 158 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHT--TTS
T ss_pred chhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhcc--CCC
Confidence 9999999999999999999999999999999999766 999999999999999 699999999999999999997 799
Q ss_pred CHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEE
Q psy1918 188 SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLV 220 (251)
Q Consensus 188 s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii 220 (251)
+++||++++++||+.+.++|. .++++++|++|
T Consensus 159 ~~~ea~~~~~~~l~~~~~~d~-~~~~~~~v~vi 190 (190)
T PF00227_consen 159 SLEEAIELALKALKEAIDRDI-LSGDNIEVAVI 190 (190)
T ss_dssp SHHHHHHHHHHHHHHHHHHBT-TSTSEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhhCC-ccCCeEEEEEC
Confidence 999999999999999999995 89999999987
No 35
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.6e-41 Score=277.37 Aligned_cols=182 Identities=26% Similarity=0.387 Sum_probs=172.0
Q ss_pred CcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918 38 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 114 (251)
Q Consensus 38 ~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la 114 (251)
+|+|||+++||||||+|++.++++. +..+|||+|++++++++||+.+|++.+.++++.++..|++.++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 6899999999999999999999863 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHH
Q psy1918 115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV 193 (251)
Q Consensus 115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~ 193 (251)
+++++.++.+++ |||++++||||+|+ ++|+||.+||.|++.+++++|+|++++.++++|++.|+ |+|+++||+
T Consensus 81 ~~l~~~~~~~~~----~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~--~~~s~~ea~ 154 (189)
T cd01912 81 NLLSNILYSYRG----FPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYK--PDMTLEEAV 154 (189)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccC--CCCCHHHHH
Confidence 999999966554 79999999999997 78999999999999999999999999999999999999 699999999
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceE
Q psy1918 194 KHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFK 227 (251)
Q Consensus 194 ~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~ 227 (251)
+++++||+.+.+||. .++++++|++|+++| ++
T Consensus 155 ~~~~~~l~~~~~~d~-~~~~~~~v~vi~~~g-~~ 186 (189)
T cd01912 155 ELVKKAIDSAIERDL-SSGGGVDVAVITKDG-VE 186 (189)
T ss_pred HHHHHHHHHHHHhcC-ccCCcEEEEEECCCC-EE
Confidence 999999999999996 789999999999987 44
No 36
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=8.2e-40 Score=269.19 Aligned_cols=178 Identities=40% Similarity=0.607 Sum_probs=169.5
Q ss_pred CcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918 38 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 114 (251)
Q Consensus 38 ~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la 114 (251)
+|+|||+++||||||+|++.++++. ++.+|||+|+++++|+++|..+|++.+.+.+++++..|++.++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 6899999999999999999998864 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHH
Q psy1918 115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV 193 (251)
Q Consensus 115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~ 193 (251)
+.+++.++.++++ +|||++++++||+|+ +||+||.+||.|++.+++++|+|+++..++++|++.|+ ++||++||+
T Consensus 81 ~~l~~~~~~~~~~--~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~--~~~s~~ea~ 156 (182)
T cd01906 81 KLLANLLYEYTQS--LRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYK--PDMTLEEAI 156 (182)
T ss_pred HHHHHHHHHhCCC--ccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHcc--CCCCHHHHH
Confidence 9999999999876 799999999999997 78999999999999999999999999999999999998 699999999
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEEEE
Q psy1918 194 KHGLRALRDTLPNDSELTTKNVSIGLV 220 (251)
Q Consensus 194 ~~~~~al~~~~~~d~~~~~~~iei~ii 220 (251)
+++++||+.+.++|. .++.+++|++|
T Consensus 157 ~l~~~~l~~~~~~~~-~~~~~~~i~ii 182 (182)
T cd01906 157 ELALKALKSALERDL-YSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHHHHHcccC-CCCCCEEEEEC
Confidence 999999999999985 68889999875
No 37
>KOG0175|consensus
Probab=100.00 E-value=2.1e-37 Score=256.97 Aligned_cols=206 Identities=19% Similarity=0.234 Sum_probs=191.8
Q ss_pred HhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCH
Q psy1918 34 VKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPV 110 (251)
Q Consensus 34 ~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~ 110 (251)
..+|+|++|++++.|||+|+|+|++.+.+ ...+||++|+++++-+.+|-.+||+.+.+.+.++|+.|++++++.|+|
T Consensus 68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSV 147 (285)
T KOG0175|consen 68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISV 147 (285)
T ss_pred ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceeh
Confidence 36899999999999999999999999864 578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHH
Q psy1918 111 FRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLE 190 (251)
Q Consensus 111 ~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ 190 (251)
+..+++|++++.+|.- + -+.+..+|||||+.||.||.||..|+..+.+-.++|+|+.+|.++|+..|+ ++|+.+
T Consensus 148 saASKllsN~~y~YkG---m-GLsmGtMi~G~Dk~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr--~dls~e 221 (285)
T KOG0175|consen 148 SAASKLLSNMVYQYKG---M-GLSMGTMIAGWDKKGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYR--YDLSDE 221 (285)
T ss_pred HHHHHHHHHHHhhccC---c-chhheeeEeeccCCCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCC--CCCCHH
Confidence 9999999999966642 2 467899999999999999999999999999999999999999999999999 799999
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhhhhhc
Q psy1918 191 EIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEERR 247 (251)
Q Consensus 191 ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~~~~~ 247 (251)
||.+++++|+..+..||. ++++.+.++.|+++| |.++++.++..++..+.+..+.
T Consensus 222 EA~~L~rrAI~hAThRDa-ySGG~vnlyHv~edG-W~~v~~~Dv~~L~~~~~e~~~~ 276 (285)
T KOG0175|consen 222 EAYDLARRAIYHATHRDA-YSGGVVNLYHVKEDG-WVKVSNTDVSELHYHYYEVAPP 276 (285)
T ss_pred HHHHHHHHHHHHHHhccc-ccCceEEEEEECCcc-ceecCCccHHHHHHHHHHhcCc
Confidence 999999999999999996 999999999999997 9999999999997766655443
No 38
>KOG0185|consensus
Probab=100.00 E-value=2.5e-36 Score=247.69 Aligned_cols=222 Identities=16% Similarity=0.180 Sum_probs=195.8
Q ss_pred ceeecCCCcch------hhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHH
Q psy1918 15 VTVWSPQGRLH------QVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTAD 85 (251)
Q Consensus 15 ~t~fsp~G~l~------QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D 85 (251)
+++|.|.|.+. .+...+.++-+|++|||+|++||||+|+|+..+++.. .+.+|||+++||+++|+||..+|
T Consensus 13 ~~~f~~~~~~m~~a~~~~~qrt~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD 92 (256)
T KOG0185|consen 13 PGTFYPSGSLMENAGDYPIQRTLNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISD 92 (256)
T ss_pred CCcCcCccchhhhccCCCcccccCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHH
Confidence 45677776642 2223345567899999999999999999999999853 68999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-hhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCC-CCeEEEECCCCCeeeeeE
Q psy1918 86 ARILARFMRMECLNYK-YAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-GPHIYQTCPSSNYYDVKA 163 (251)
Q Consensus 86 ~~~l~~~l~~~~~~~~-~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~-gp~ly~id~~G~~~~~~~ 163 (251)
.|.+.+.|.....+.. +..|+.+.|+.++++|.+.+ |.+|+.+.|++..++|||+|++ .|.|..+|-.|..++.+.
T Consensus 93 ~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvl--Y~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~ 170 (256)
T KOG0185|consen 93 FQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVL--YARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPV 170 (256)
T ss_pred HHHHHHHHHHHHhcccccccccccChHHHHHHHHHHH--HHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCch
Confidence 9999999998877754 55668999999999999999 9999999999999999999984 499999999999999999
Q ss_pred EEEcCChHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHH
Q psy1918 164 MAIGSRSQSARTYLEKRLA-DFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSL 240 (251)
Q Consensus 164 ~a~G~g~~~a~~~L~~~~~-~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~ 240 (251)
.|+|.|...|+++|++.|+ +.++++.+||..++.+||+..++||+ .+.++|++++|+++| +.+-.|..|+..+.-
T Consensus 171 vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~-ra~n~fqva~v~~eG-v~i~~p~qv~~~W~f 246 (256)
T KOG0185|consen 171 VATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDA-RASNEFQVATVDEEG-VTISKPYQVKTNWDF 246 (256)
T ss_pred hhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHhcccc-ccccceEEEEEcccc-eEecCceeeeecchh
Confidence 9999999999999999997 44789999999999999999999997 688899999999986 888777777665543
No 39
>KOG0179|consensus
Probab=100.00 E-value=2.1e-35 Score=238.57 Aligned_cols=187 Identities=22% Similarity=0.358 Sum_probs=173.6
Q ss_pred HhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCH
Q psy1918 34 VKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPV 110 (251)
Q Consensus 34 ~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~ 110 (251)
..+|+|+|||++.|++|+|+|+|.+++.. ++++|||+++|+++++.||.++|+..|...++...+.|+..++..|++
T Consensus 26 ~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~ 105 (235)
T KOG0179|consen 26 EDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSI 105 (235)
T ss_pred ccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccH
Confidence 46899999999999999999999999863 689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCC-CeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcC------
Q psy1918 111 FRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAG-PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLAD------ 183 (251)
Q Consensus 111 ~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~g-p~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~------ 183 (251)
..+|++|+..+ |.+|. .||.+..+|+|+|+.| |.+|+.||.|++.+..+.|.|+++.+++++|+.....
T Consensus 106 ~s~A~lls~~L--Y~kRF--FPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~~e 181 (235)
T KOG0179|consen 106 HSAAQLLSTIL--YSKRF--FPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQNLE 181 (235)
T ss_pred HHHHHHHHHHH--hhccc--ccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCcccc
Confidence 99999999999 87765 6999999999999855 9999999999999999999999999999999975421
Q ss_pred ---CCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCc
Q psy1918 184 ---FPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQK 225 (251)
Q Consensus 184 ---~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~ 225 (251)
.+.+++|+|+.++.+++..+.+||. ..+++++|+|++++|.
T Consensus 182 ~~~~~~Ls~e~ai~lv~d~F~SAaERdI-~tGD~l~i~I~tk~gV 225 (235)
T KOG0179|consen 182 NAERTPLSLERAIRLVKDAFTSAAERDI-YTGDKLEICIITKDGV 225 (235)
T ss_pred cCcccccCHHHHHHHHHHHhhhhhhccc-ccCCcEEEEEEecCCE
Confidence 2467899999999999999999996 8999999999999984
No 40
>KOG0177|consensus
Probab=100.00 E-value=2.6e-34 Score=229.04 Aligned_cols=186 Identities=19% Similarity=0.305 Sum_probs=173.2
Q ss_pred cEEEeeeCCeEEEEEeccCcccc---ccccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHH
Q psy1918 39 ATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLIS 115 (251)
Q Consensus 39 tvigi~~~dgVvla~d~~~~~~l---~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~ 115 (251)
+++||++.|+|++|+|+....+. .++++|++.|++++.|+++|..+|+-++.+++++.++.|+.++|.++||+.+|+
T Consensus 3 ~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aah 82 (200)
T KOG0177|consen 3 TLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAH 82 (200)
T ss_pred eEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHH
Confidence 68999999999999999988875 378999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHH
Q psy1918 116 IVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK 194 (251)
Q Consensus 116 ~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~ 194 (251)
++++.++++.+. .+||-|++++||+|+ .||.||++|..|+..+.++++.|.++.++.++|++.|+ |+||.+||++
T Consensus 83 FtR~~La~~LRs--r~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~--pdmt~eea~~ 158 (200)
T KOG0177|consen 83 FTRRELAESLRS--RTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYK--PDMTIEEALD 158 (200)
T ss_pred HHHHHHHHHHhc--CCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhC--CCCCHHHHHH
Confidence 999999999874 379999999999996 67999999999999999999999999999999999999 7999999999
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEec
Q psy1918 195 HGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLD 230 (251)
Q Consensus 195 ~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~ 230 (251)
+..+|+.+.-+|= .....+|.+.+|+++| .+.++
T Consensus 159 lmkKCv~El~kRl-vin~~~f~v~IVdkdG-ir~~~ 192 (200)
T KOG0177|consen 159 LMKKCVLELKKRL-VINLPGFIVKIVDKDG-IRKLD 192 (200)
T ss_pred HHHHHHHHHHHhc-ccCCCCcEEEEEcCCC-ceecc
Confidence 9999998887775 4678899999999997 66553
No 41
>KOG0173|consensus
Probab=100.00 E-value=2.8e-34 Score=237.87 Aligned_cols=184 Identities=24% Similarity=0.304 Sum_probs=173.2
Q ss_pred HHhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy1918 33 AVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLP 109 (251)
Q Consensus 33 a~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~ 109 (251)
+.+.|+|++|+.++||||+++|+|.+.+.. .+.+||+.|.++|+||.+|-.+|...+.+.+..+...|.+..++++.
T Consensus 33 ~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~~r 112 (271)
T KOG0173|consen 33 ATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRKPR 112 (271)
T ss_pred ccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCCCc
Confidence 456799999999999999999999999864 58899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCH
Q psy1918 110 VFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASL 189 (251)
Q Consensus 110 ~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~ 189 (251)
+-....++.+.+..|.- -.++.+|++|+|..|||||++.|.|+.....|.+.|+|+..|+.+||..|+ |+|++
T Consensus 113 Vv~A~~mlkQ~LFrYqG-----~IgA~LiiGGvD~TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k--~dlt~ 185 (271)
T KOG0173|consen 113 VVTALRMLKQHLFRYQG-----HIGAALILGGVDPTGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWK--PDLTK 185 (271)
T ss_pred eeeHHHHHHHHHHHhcC-----cccceeEEccccCCCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcC--cccCH
Confidence 99999999999977753 468999999999999999999999999999999999999999999999999 79999
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC
Q psy1918 190 EEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ 224 (251)
Q Consensus 190 ~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~ 224 (251)
|||++++.+|+...+.+|. .|+.++++|+|++.+
T Consensus 186 eea~~Lv~eAi~AGi~nDL-gSGsnvdlcVI~~~~ 219 (271)
T KOG0173|consen 186 EEAIKLVCEAIAAGIFNDL-GSGSNVDLCVITKKG 219 (271)
T ss_pred HHHHHHHHHHHHhhhcccc-CCCCceeEEEEeCCC
Confidence 9999999999999999996 799999999999654
No 42
>KOG0174|consensus
Probab=100.00 E-value=5.9e-34 Score=227.64 Aligned_cols=198 Identities=18% Similarity=0.223 Sum_probs=177.4
Q ss_pred HHhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy1918 33 AVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLP 109 (251)
Q Consensus 33 a~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~ 109 (251)
.+..|+|++|+++++||||++|+|.+.+.+ +..+|+.+|.|+|+||-||..+|.|.+.+.++.++..|..+++.+++
T Consensus 15 evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~ 94 (224)
T KOG0174|consen 15 EVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPL 94 (224)
T ss_pred ccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCch
Confidence 467899999999999999999999999964 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCC
Q psy1918 110 VFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS 188 (251)
Q Consensus 110 ~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s 188 (251)
+...|+.+++++.+| +. -+.+++||||||+ .|.++|.+---|+..+-.+..-|+||.++.++++.+|| |+|+
T Consensus 95 v~~aA~l~r~~~Y~~--re---~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r--~nMt 167 (224)
T KOG0174|consen 95 VHTAASLFREICYNY--RE---MLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWR--PNMT 167 (224)
T ss_pred HHHHHHHHHHHHHhC--HH---hhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcC--CCCC
Confidence 999999999999444 32 4789999999996 68999999555556666777778999999999999999 7999
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCc-eEEecHHHHHHHH
Q psy1918 189 LEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQK-FKTLDERETGHYL 238 (251)
Q Consensus 189 ~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~-~~~l~~~ei~~~l 238 (251)
+||++....+|+..++.||- .+++.|.+.+|+++|. .+.+.++++.++.
T Consensus 168 ~EE~~~fvk~Av~lAi~rDG-sSGGviR~~~I~~~Gver~~~~~d~~~~~~ 217 (224)
T KOG0174|consen 168 LEECVRFVKNAVSLAIERDG-SSGGVIRLVIINKAGVERRFFPGDKLGQFA 217 (224)
T ss_pred HHHHHHHHHHHHHHHHhccC-CCCCEEEEEEEccCCceEEEecCCcccccc
Confidence 99999999999999999995 7999999999999984 5667777776654
No 43
>KOG0180|consensus
Probab=99.97 E-value=1.2e-30 Score=205.01 Aligned_cols=183 Identities=20% Similarity=0.272 Sum_probs=172.5
Q ss_pred hcCCcEEEeeeCCeEEEEEeccCcccc---ccccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q psy1918 35 KQGSATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVF 111 (251)
Q Consensus 35 ~~G~tvigi~~~dgVvla~d~~~~~~l---~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~ 111 (251)
-+|+++||++++|+|.||+|.|....+ ..+.+|||+++|++++|.+|+..|++.+.++++...+.|+++.++.|.|+
T Consensus 6 ynGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~ 85 (204)
T KOG0180|consen 6 YNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPE 85 (204)
T ss_pred ecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcH
Confidence 379999999999999999999987764 36899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeee-eEEEEcCChHHHHHHHHHhhcCCCCCCH
Q psy1918 112 RLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDV-KAMAIGSRSQSARTYLEKRLADFPEASL 189 (251)
Q Consensus 112 ~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~-~~~a~G~g~~~a~~~L~~~~~~~~~~s~ 189 (251)
.+++.++..+ |.+|.+ ||.+..+|||+|+ +.|+|..+|..|..... ++.+.|.+++...+.+|..|+ |||..
T Consensus 86 ~~s~mvS~~l--YekRfg--pYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~--pnmep 159 (204)
T KOG0180|consen 86 TFSSMVSSLL--YEKRFG--PYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYE--PNMEP 159 (204)
T ss_pred HHHHHHHHHH--HHhhcC--CcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcC--CCCCH
Confidence 9999999999 888875 9999999999987 45999999999999854 899999999999999999999 89999
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC
Q psy1918 190 EEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ 224 (251)
Q Consensus 190 ~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~ 224 (251)
|++.+.+.+||.++.+||+ ++|+...+++|+++.
T Consensus 160 d~LFetisQa~Lna~DRDa-lSGwGa~vyiI~kdk 193 (204)
T KOG0180|consen 160 DELFETISQALLNAVDRDA-LSGWGAVVYIITKDK 193 (204)
T ss_pred HHHHHHHHHHHHhHhhhhh-hccCCeEEEEEccch
Confidence 9999999999999999996 899999999999986
No 44
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.97 E-value=9.2e-30 Score=207.24 Aligned_cols=165 Identities=18% Similarity=0.143 Sum_probs=140.3
Q ss_pred CCcEEEeeeCCeEEEEEeccCcccc---ccccCceEEE-cCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHH
Q psy1918 37 GSATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVI-DDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFR 112 (251)
Q Consensus 37 G~tvigi~~~dgVvla~d~~~~~~l---~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~ 112 (251)
|+|+|||+++||||||+|+|++.+. .++.+||++| +++++||+||..+|++.+.+.++.+++.|+. + . ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~--~-~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--N--L-LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--c--c-HHH
Confidence 6899999999999999999999885 3688999999 9999999999999999999999999999883 2 2 466
Q ss_pred HHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeee--eEEEEcCChHHHHHHHHHhhcCCCCCCHH
Q psy1918 113 LISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDV--KAMAIGSRSQSARTYLEKRLADFPEASLE 190 (251)
Q Consensus 113 la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~--~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ 190 (251)
+++.+..+. .+ ...+|+.+++|++ |. |+||.+||.|+..+. +++|+|+|+.++.++|++.|+. |+|
T Consensus 76 ~a~l~~~l~-~~---~~~~~l~~~~lv~--d~--~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~-~~m--- 143 (172)
T PRK05456 76 AVELAKDWR-TD---RYLRRLEAMLIVA--DK--EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLEN-TDL--- 143 (172)
T ss_pred HHHHHHHHH-hc---cCCCccEEEEEEE--cC--CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhc-CCC---
Confidence 665543321 11 1235888999994 33 799999999999766 7999999999999999999983 488
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCeEEEEE
Q psy1918 191 EIVKHGLRALRDTLPNDSELTTKNVSIGL 219 (251)
Q Consensus 191 ea~~~~~~al~~~~~~d~~~~~~~iei~i 219 (251)
||++++++|++.+.+||. .+++++++-.
T Consensus 144 eA~~la~kai~~A~~Rd~-~sg~~i~v~~ 171 (172)
T PRK05456 144 SAEEIAEKALKIAADICI-YTNHNITIEE 171 (172)
T ss_pred CHHHHHHHHHHHHHHhCe-eCCCcEEEEE
Confidence 999999999999999996 8999988754
No 45
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.97 E-value=1e-28 Score=197.58 Aligned_cols=159 Identities=38% Similarity=0.520 Sum_probs=151.8
Q ss_pred CcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918 38 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 114 (251)
Q Consensus 38 ~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la 114 (251)
+|+|||+++||||+|+|++.+.++. ....|++.++++++++++|..+|++.+.++++.++..|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 5899999999999999999998874 4789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeee-eEEEEcCChHHHHHHHHHhhcCCCCCCHHHHH
Q psy1918 115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDV-KAMAIGSRSQSARTYLEKRLADFPEASLEEIV 193 (251)
Q Consensus 115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~-~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~ 193 (251)
+.+++.++.+++ .||++++++++|+|+++|+||.+||.|++.+. .++++|.++..+.++|++.|+ ++++.+|++
T Consensus 81 ~~~~~~~~~~~~---~~p~~~~~iiag~~~~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~--~~~~~~~~~ 155 (164)
T cd01901 81 KELAKLLQVYTQ---GRPFGVNLIVAGVDEGGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYK--PDMTLEEAV 155 (164)
T ss_pred HHHHHHHHHhcC---CCCcceEEEEEEEcCCCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhc--CCCCHHHHH
Confidence 999999988877 68999999999999888999999999999999 999999999999999999998 689999999
Q ss_pred HHHHHHHH
Q psy1918 194 KHGLRALR 201 (251)
Q Consensus 194 ~~~~~al~ 201 (251)
+++.+||+
T Consensus 156 ~~~~~~l~ 163 (164)
T cd01901 156 ELALKALK 163 (164)
T ss_pred HHHHHHHh
Confidence 99999985
No 46
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.97 E-value=4e-29 Score=202.26 Aligned_cols=162 Identities=17% Similarity=0.107 Sum_probs=136.7
Q ss_pred CcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcC-cEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHH
Q psy1918 38 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDD-HMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRL 113 (251)
Q Consensus 38 ~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~l 113 (251)
+|+|||+++||||||+|+|++.+.. ++.+||++|++ |++||++|..+|++.|.++++.+++.|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 6899999999999999999999853 68899999999 999999999999999999999999999987663 44
Q ss_pred HHHHHHHHHHhhhcCCCCcce-eeeeEEEEeCCCCeEEEECCCCCeeeee--EEEEcCChHHHHHHHHHhhcCCCC-CCH
Q psy1918 114 ISIVGNKMQVCTQRYDKRPYG-VGLLVAGYDDAGPHIYQTCPSSNYYDVK--AMAIGSRSQSARTYLEKRLADFPE-ASL 189 (251)
Q Consensus 114 a~~l~~~~~~yt~~~~~rP~~-v~~iv~G~d~~gp~ly~id~~G~~~~~~--~~a~G~g~~~a~~~L~~~~~~~~~-~s~ 189 (251)
++.+... +.| ..+|+. +.++++++| +||.+||.|+..+.+ +.|+|+|+.+|.++|+.+|+ ++ |+
T Consensus 76 a~l~~~l-~~~----~~~~~l~a~~iv~~~~----~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk--~~~ms- 143 (171)
T cd01913 76 VELAKDW-RTD----RYLRRLEAMLIVADKE----HTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLD--HTDLS- 143 (171)
T ss_pred HHHHHHH-Hhc----cCcCceEEEEEEeCCC----cEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhc--cCCCC-
Confidence 4443332 212 224555 777776553 899999999999984 99999999999999999999 54 99
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCeEEEEE
Q psy1918 190 EEIVKHGLRALRDTLPNDSELTTKNVSIGL 219 (251)
Q Consensus 190 ~ea~~~~~~al~~~~~~d~~~~~~~iei~i 219 (251)
+.++|++|++.+.+||. .++++|++-.
T Consensus 144 --~~~la~~Av~~A~~rd~-~tg~~i~~~~ 170 (171)
T cd01913 144 --AEEIARKALKIAADICI-YTNHNITVEE 170 (171)
T ss_pred --HHHHHHHHHHHHHhhCc-ccCCCEEEEe
Confidence 55999999999999996 8999988754
No 47
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.96 E-value=1.6e-28 Score=198.77 Aligned_cols=164 Identities=17% Similarity=0.116 Sum_probs=136.9
Q ss_pred CcEEEeeeCCeEEEEEeccCccccc---cccCceEEE-cCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHH
Q psy1918 38 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVI-DDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRL 113 (251)
Q Consensus 38 ~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~l 113 (251)
+|+|||+++||||||+|+|++.+.. ++.+||++| ++|++||++|..+|++.|.++++.+++.|+.+. .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 6899999999999999999999853 688999999 599999999999999999999999999987642 3666
Q ss_pred HHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeee--eEEEEcCChHHHHHHHHHhhcCCCCCCHHH
Q psy1918 114 ISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDV--KAMAIGSRSQSARTYLEKRLADFPEASLEE 191 (251)
Q Consensus 114 a~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~--~~~a~G~g~~~a~~~L~~~~~~~~~~s~~e 191 (251)
++.+++. +.| ...+.+.+.+++++| ++||.+||.|+..+. ++.++|+|+.+|.++|+.+|+. ++|+
T Consensus 76 a~l~~~~-~~~---~~~~~l~a~~iv~~~----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~-~~~s--- 143 (171)
T TIGR03692 76 VELAKDW-RTD---RYLRRLEAMLIVADK----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRN-TDLS--- 143 (171)
T ss_pred HHHHHHH-hhc---ccccccEEEEEEEcC----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhc-CCCC---
Confidence 6665553 111 111234477777644 499999999999997 5999999999999999999964 5777
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCeEEEEE
Q psy1918 192 IVKHGLRALRDTLPNDSELTTKNVSIGL 219 (251)
Q Consensus 192 a~~~~~~al~~~~~~d~~~~~~~iei~i 219 (251)
|+++|++|++.+++||. .++++|++-.
T Consensus 144 a~~la~~Av~~A~~rd~-~sg~~i~v~~ 170 (171)
T TIGR03692 144 AEEIAREALKIAADICI-YTNHNITIEE 170 (171)
T ss_pred HHHHHHHHHHHHHhhCc-cCCCCEEEEe
Confidence 99999999999999996 8999988754
No 48
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=99.53 E-value=3.5e-15 Score=79.53 Aligned_cols=23 Identities=65% Similarity=1.096 Sum_probs=22.3
Q ss_pred CCCCceeecCCCcchhhchHHHH
Q psy1918 11 YDSDVTVWSPQGRLHQVEYAMEA 33 (251)
Q Consensus 11 yd~~~t~fsp~G~l~QvEya~~a 33 (251)
||+++|+|||+|||+|||||++|
T Consensus 1 YD~~~t~FSp~Grl~QVEYA~~A 23 (23)
T PF10584_consen 1 YDRSITTFSPDGRLFQVEYAMKA 23 (23)
T ss_dssp TSSSTTSBBTTSSBHHHHHHHHH
T ss_pred CCCCceeECCCCeEEeeEeeecC
Confidence 89999999999999999999986
No 49
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=9.9e-11 Score=92.09 Aligned_cols=166 Identities=20% Similarity=0.190 Sum_probs=119.7
Q ss_pred cCCcEEEeeeCCeEEEEEeccCcccc---ccc---cCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy1918 36 QGSATVGLKNKTHAVIIALKRAASEL---AAH---QKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLP 109 (251)
Q Consensus 36 ~G~tvigi~~~dgVvla~d~~~~~~l---~~~---~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~ 109 (251)
+++|+++++-++-|++|.|.+++-+. ..+ ..||+ +.+++.|++|..+|+..+.+.+..+++.|.-+
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~--~gkvlaGFAGstADaftLfe~fe~kle~~~g~------ 74 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLY--NGKVLAGFAGSTADAFTLFERFEAKLEQYQGD------ 74 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHc--CCcEEEEecccchhHHHHHHHHHHHHHHccCc------
Confidence 57999999999999999999998874 234 45565 56899999999999999999999999887421
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeee--eEEEEcCChHHHHHHHHHhhcCCCCC
Q psy1918 110 VFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDV--KAMAIGSRSQSARTYLEKRLADFPEA 187 (251)
Q Consensus 110 ~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~--~~~a~G~g~~~a~~~L~~~~~~~~~~ 187 (251)
+...+-.+++-+ ++.+ ..|.+.+-++++ |+ -.++-+.-.|-..+. ..+|+|||..+|.......++. +++
T Consensus 75 L~raavelaKdw--r~Dk-~lr~LEAmllVa--d~--~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~-~~l 146 (178)
T COG5405 75 LFRAAVELAKDW--RTDK-YLRKLEAMLLVA--DK--THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMEN-TEL 146 (178)
T ss_pred HHHHHHHHHHhh--hhhh-HHHHHhhheeEe--CC--CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhc-cCC
Confidence 333455555555 3332 234566777776 43 357777788887754 5899999999999998888764 567
Q ss_pred CHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEe
Q psy1918 188 SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVG 221 (251)
Q Consensus 188 s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~ 221 (251)
+ |.+++.++|..+-+-. .+++.++.|-.++
T Consensus 147 s---A~eIa~~sl~iA~eic-iyTN~ni~ve~l~ 176 (178)
T COG5405 147 S---AREIAEKSLKIAGDIC-IYTNHNIVVEELR 176 (178)
T ss_pred C---HHHHHHHHHhhhheEE-EecCCcEEEEEee
Confidence 7 5556666776655332 3555566555443
No 50
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2.7e-10 Score=92.78 Aligned_cols=182 Identities=18% Similarity=0.255 Sum_probs=139.4
Q ss_pred cEEEeeeCCeEEEEEeccCcccc--ccccCceEEE---cCc-EEEEEeCcHHHHHHHHHHHHHHHHHHhhh-cCCCCCHH
Q psy1918 39 ATVGLKNKTHAVIIALKRAASEL--AAHQKKIIVI---DDH-MGLSFAGLTADARILARFMRMECLNYKYA-HKDTLPVF 111 (251)
Q Consensus 39 tvigi~~~dgVvla~d~~~~~~l--~~~~~Ki~~i---~~~-i~~~~sG~~~D~~~l~~~l~~~~~~~~~~-~~~~i~~~ 111 (251)
-|||++...|.|+++|+|...+. ....+|+|-. +++ ++++.+|..+-.|.+++.+.+..+...-. .-.-.++-
T Consensus 3 YCv~l~l~~GlVf~sDsRTNAGvD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~sm~ 82 (255)
T COG3484 3 YCVGLILDFGLVFGSDSRTNAGVDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPSMY 82 (255)
T ss_pred eEEEEEeccceEEecccccccCchHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchhHH
Confidence 48999999999999999999886 3566776644 233 56789999999999999998777532111 11234566
Q ss_pred HHHHHHHHHHHHhhhcCC------CCcceeeeeEEEEeCCC-CeEEEECCCCCeeee----eEEEEcCChHHHHHHHHHh
Q psy1918 112 RLISIVGNKMQVCTQRYD------KRPYGVGLLVAGYDDAG-PHIYQTCPSSNYYDV----KAMAIGSRSQSARTYLEKR 180 (251)
Q Consensus 112 ~la~~l~~~~~~yt~~~~------~rP~~v~~iv~G~d~~g-p~ly~id~~G~~~~~----~~~a~G~g~~~a~~~L~~~ 180 (251)
+.+.+++....+-.-+.. ---|.|+++++|.=.++ |.||.+-|.|++.+. .+.-+|. +.+-+++|++.
T Consensus 83 eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPildR~ 161 (255)
T COG3484 83 EATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPILDRT 161 (255)
T ss_pred HHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccc-cccCchhhhhh
Confidence 777777776655443331 01367999999986544 899999999999965 6888997 56678999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC
Q psy1918 181 LADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ 224 (251)
Q Consensus 181 ~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~ 224 (251)
++ -+++++|+.++++-++...++.+. ..|-.+++-++.++-
T Consensus 162 i~--~~~pLeea~kcaLvS~DSTlkSNi-SVGlPldLl~~e~ds 202 (255)
T COG3484 162 IT--YDTPLEEAAKCALVSFDSTLKSNI-SVGLPLDLLVYEADS 202 (255)
T ss_pred hh--ccCCHHHHhhheEEecchhhhccc-cccCCceeEEEeccc
Confidence 98 499999999999999988888775 567789998888874
No 51
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=96.75 E-value=0.044 Score=45.04 Aligned_cols=151 Identities=21% Similarity=0.210 Sum_probs=92.5
Q ss_pred CcEEEeeeCCeEEEEEeccCccccccccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCC-CHHHHHHH
Q psy1918 38 SATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL-PVFRLISI 116 (251)
Q Consensus 38 ~tvigi~~~dgVvla~d~~~~~~l~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i-~~~~la~~ 116 (251)
+.+||.-+++|+|+|.|+|- +++-|.-.....|-+.| |+-.+ +-+.|.+.
T Consensus 2 SLII~y~GknGaViaGDkR~-------------------I~F~G~~~~re~LEeeL----------YsG~IktdeEL~kk 52 (194)
T PF09894_consen 2 SLIIAYYGKNGAVIAGDKRN-------------------IAFRGDEEKREKLEEEL----------YSGKIKTDEELLKK 52 (194)
T ss_pred eEEEEEecCCCcEEecccee-------------------eeecCCHHHHHHHHHHH----------hCCccCCHHHHHHH
Confidence 46899999999999999972 56778887777776655 44444 55556555
Q ss_pred HHHHH---HHhhhcCCCCcceeeeeEEEE------eCCCCeEEEE-------CCCCCeeeeeEEEEcCCh----------
Q psy1918 117 VGNKM---QVCTQRYDKRPYGVGLLVAGY------DDAGPHIYQT-------CPSSNYYDVKAMAIGSRS---------- 170 (251)
Q Consensus 117 l~~~~---~~yt~~~~~rP~~v~~iv~G~------d~~gp~ly~i-------d~~G~~~~~~~~a~G~g~---------- 170 (251)
...+= +.--.+...|-.+- ++++-+ |...-++|.. |-.|.-.. -...|.++
T Consensus 53 A~Elgv~i~I~D~r~KV~~~~~-vlvGEV~s~~g~~skRRRiY~t~g~~~Ivei~~~~i~--~~~~g~~sgiIVfGNk~~ 129 (194)
T PF09894_consen 53 AEELGVKIKITDDREKVRKIGD-VLVGEVTSISGKDSKRRRIYATKGKYAIVEIENDEIT--NKSRGEGSGIIVFGNKFT 129 (194)
T ss_pred HHHcCCEEEEecCchheEEeCC-EEEEEEEEEcCccceeeEEEecCCCEEEEEecCCeEE--EEecCCceeEEEECCHHH
Confidence 44321 10001111112222 333322 3233456643 22332222 22334443
Q ss_pred -HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecC
Q psy1918 171 -QSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQN 223 (251)
Q Consensus 171 -~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~ 223 (251)
+.|..+|+++|+ |.|+++++..+..++|..+...- +..+..+++...++.
T Consensus 130 K~ia~~~lkk~~~--~k~~l~~i~~i~~~i~~~~a~~t-psvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 130 KEIANKELKKYWK--PKMSLKDIENIFEKIMEEVASKT-PSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHhhcC-CCccCcEEEEEeccc
Confidence 667888999998 79999999999999999886443 466778888887764
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.24 E-value=1.3 Score=37.83 Aligned_cols=168 Identities=18% Similarity=0.197 Sum_probs=100.4
Q ss_pred CcEEEeeeCCeEEEEEeccCccccccccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q psy1918 38 SATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIV 117 (251)
Q Consensus 38 ~tvigi~~~dgVvla~d~~~~~~l~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l 117 (251)
+.+|+..++||+|+|.|+|. +.+-|.-.|...+.+.| -.|.--+-+.|++.+
T Consensus 2 tLviay~gknGaviaGDrR~-------------------i~frgdee~re~lEekL---------YsGeIkteEEL~r~a 53 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRRE-------------------ITFRGDEEDREKLEEKL---------YSGEIKTEEELARKA 53 (293)
T ss_pred eEEEEEecCCCcEEeccceE-------------------EEEecChhHHHHHHHHh---------hcCccccHHHHHHHH
Confidence 46889999999999999872 46678888877776655 134444666777766
Q ss_pred HHHHHHhhh---cCCCCcceeeeeEEEEeCCC------CeEEEECCCCCeee-------eeEEEEcC-------C----h
Q psy1918 118 GNKMQVCTQ---RYDKRPYGVGLLVAGYDDAG------PHIYQTCPSSNYYD-------VKAMAIGS-------R----S 170 (251)
Q Consensus 118 ~~~~~~yt~---~~~~rP~~v~~iv~G~d~~g------p~ly~id~~G~~~~-------~~~~a~G~-------g----~ 170 (251)
...--..+- +...|...-+++++-+...+ -++|-. .|.+.- .-....|. | -
T Consensus 54 eel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT--~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk~~K 131 (293)
T COG4079 54 EELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYAT--AGAYAIVELRGSEVTSTSQGKGSAIIVFGNKFTK 131 (293)
T ss_pred HHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeec--CCceEEEEecCCeeEeeecCCCceEEEECcHHHH
Confidence 543211110 11112232344444443221 244432 233221 11122222 2 2
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC-ceEEecHHHHHHHH
Q psy1918 171 QSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ-KFKTLDERETGHYL 238 (251)
Q Consensus 171 ~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~-~~~~l~~~ei~~~l 238 (251)
+.++.+|.++|. +.++++++.++..++|..+.... ++.+..++++.+.++- ++.+|-+.+|+.+.
T Consensus 132 e~aneflk~~l~--~k~~lqd~~dal~elfe~vss~t-psVskeydiy~vs~~~d~~~rl~kkDie~L~ 197 (293)
T COG4079 132 EVANEFLKDNLT--KKSKLQDAVDALMELFETVSSKT-PSVSKEYDIYQVSSNVDPVLRLVKKDIETLR 197 (293)
T ss_pred HHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHhhcCC-CcccceeEEEEecCCcCHHHHHHHHHHHHHH
Confidence 446778888888 57889999998888887776444 4677799999998753 36667666665543
No 53
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=71.90 E-value=29 Score=24.76 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC-ceEEecHHHHHHHHHHhhhhhh
Q psy1918 185 PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ-KFKTLDERETGHYLSLIEGEER 246 (251)
Q Consensus 185 ~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~-~~~~l~~~ei~~~l~~~~~~~~ 246 (251)
+..+.++..+.+++..+. .....|.|.+++++| ++.+-+.+|+++.++-++.-++
T Consensus 18 ~~~s~e~L~~~v~~~c~~-------~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~~n~~ 73 (83)
T cd06404 18 PSISLEELCNEVRDMCRF-------HNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYELNKD 73 (83)
T ss_pred CCcCHHHHHHHHHHHhCC-------CCCCcEEEEEECCCCCceeecCHHHHHHHHHHHHhcCc
Confidence 567888888887776642 234489999999987 6899999999999887775544
No 54
>KOG3361|consensus
Probab=69.55 E-value=11 Score=29.32 Aligned_cols=81 Identities=17% Similarity=0.141 Sum_probs=53.9
Q ss_pred EEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEe
Q psy1918 150 YQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTL 229 (251)
Q Consensus 150 y~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l 229 (251)
..+|-+|.+...+|-..|.|+..|-.-+-..|- ..+++||+..+--.-+-.-+ +-..+.+ -+-.|
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewv--kgkt~dea~kIkNteIAKeL------~LPPVKL-------HCSML 135 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWV--KGKTLDEALKIKNTEIAKEL------SLPPVKL-------HCSML 135 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHH--ccccHHHHHhcccHHHHHhc------cCCchhh-------hhHHH
Confidence 367889999999999999999998887777675 38999998774322221111 1111111 14456
Q ss_pred cHHHHHHHHHHhhhhh
Q psy1918 230 DERETGHYLSLIEGEE 245 (251)
Q Consensus 230 ~~~ei~~~l~~~~~~~ 245 (251)
-++-|+..+.++.+.+
T Consensus 136 AEDAIKaAikdyk~Kq 151 (157)
T KOG3361|consen 136 AEDAIKAAIKDYKEKQ 151 (157)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7777888887776544
No 55
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=52.32 E-value=18 Score=23.97 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=28.3
Q ss_pred eeecC-CCcchhhchHHHHHhcCCcEEEeeeCC
Q psy1918 16 TVWSP-QGRLHQVEYAMEAVKQGSATVGLKNKT 47 (251)
Q Consensus 16 t~fsp-~G~l~QvEya~~a~~~G~tvigi~~~d 47 (251)
|.||+ +|.+---+|...|..+|-..+||.=.+
T Consensus 6 t~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 6 SDYSLLDGALSPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred cCCccccccCCHHHHHHHHHHcCCCEEEEeeCC
Confidence 56888 899888899999999999999998776
No 56
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=51.04 E-value=12 Score=23.37 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=24.3
Q ss_pred EcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q psy1918 166 IGSRSQSARTYLEKRLADFPEASLEEIVKHGLRA 199 (251)
Q Consensus 166 ~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~a 199 (251)
-|+....+...+.+... .++++.++.++.+++.
T Consensus 13 LGy~~~e~~~av~~~~~-~~~~~~e~~ik~aLk~ 45 (47)
T PF07499_consen 13 LGYSKAEAQKAVSKLLE-KPGMDVEELIKQALKL 45 (47)
T ss_dssp TTS-HHHHHHHHHHHHH-STTS-HHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHhh
Confidence 47888889999988874 2789999988877653
No 57
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=36.20 E-value=68 Score=20.26 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=27.7
Q ss_pred EEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhc
Q psy1918 149 IYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLA 182 (251)
Q Consensus 149 ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~ 182 (251)
-|.|+|+|.+...-....|.+...+...|++...
T Consensus 2 ~~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~LG 35 (48)
T PF11211_consen 2 EFTIYPDGRVEEEVEGFKGSSCLEATAALEEALG 35 (48)
T ss_pred EEEECCCcEEEEEEEeccChhHHHHHHHHHHHhC
Confidence 3678999999888888889888888888887653
No 58
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=34.35 E-value=54 Score=27.26 Aligned_cols=33 Identities=9% Similarity=0.236 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEe
Q psy1918 107 TLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD 143 (251)
Q Consensus 107 ~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d 143 (251)
+-+|+.++.-|++.++.|.++++.+ .++|+|+.
T Consensus 44 ~rtP~~~a~Dl~~~i~~y~~~w~~~----~vvLiGYS 76 (192)
T PF06057_consen 44 ERTPEQTAADLARIIRHYRARWGRK----RVVLIGYS 76 (192)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhCCc----eEEEEeec
Confidence 5678999999999999999988653 45778886
No 59
>PF08289 Flu_M1_C: Influenza Matrix protein (M1) C-terminal domain; InterPro: IPR013188 Matrix protein (M1) of Influenza virus is a bifunctional membrane/RNA-binding protein that mediates the encapsidation of RNA-nucleoprotein cores into the membrane envelope. It is therefore required that M1 binds both membrane and RNA simultaneously. M1 is comprised of two domains connected by a linker sequence. The C-terminal domain contains alpha-helical structure and appears to be involved in growth and virulence of the virus [, ].; GO: 0003723 RNA binding, 0005198 structural molecule activity
Probab=33.09 E-value=1.4e+02 Score=21.24 Aligned_cols=51 Identities=14% Similarity=0.002 Sum_probs=40.3
Q ss_pred EeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCC
Q psy1918 79 FAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYD 129 (251)
Q Consensus 79 ~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~ 129 (251)
.|--.+|++.+.+.++..+..-+-..-.+-+-+.+++-|-+.++.|..+.|
T Consensus 38 sseq~~e~~eiAsq~r~~i~amRsiGt~~~~~~Gl~dDlle~Lq~yQk~MG 88 (95)
T PF08289_consen 38 SSEQAAEAMEIASQARSMIQAMRSIGTHPKNSEGLADDLLENLQAYQKRMG 88 (95)
T ss_pred chHhHHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHh
Confidence 334578999999999998888776555666778899999999998887654
No 60
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=30.30 E-value=51 Score=28.76 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=36.5
Q ss_pred EEEEeCCCCeEEEECCCCCeeee---eEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q psy1918 139 VAGYDDAGPHIYQTCPSSNYYDV---KAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRA 199 (251)
Q Consensus 139 v~G~d~~gp~ly~id~~G~~~~~---~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~a 199 (251)
|+|.|. .+..+|..|..... +.||.|.| .|||..-+. =+++++|.-.++.++
T Consensus 104 IGGQD~---K~I~~~~~G~v~~f~MNdkCAAGTG-----~FLe~~A~~-L~i~leel~~~a~~~ 158 (262)
T TIGR02261 104 IGALHG---RAIRMDERGKVEAYKMTSQCASGSG-----QFLENIARY-LGIAQDEIGSLSQQA 158 (262)
T ss_pred eCCCce---EEEEEcCCCcEeeEEecCccccccc-----HHHHHHHHH-hCCCHHHHHHHHhcC
Confidence 677774 48889999988766 68899998 455544332 267888877766554
No 61
>PF02831 gpW: gpW; InterPro: IPR004174 GpW is a 68 residue protein known to be present in phage particles. Extracts of phage-infected cells lacking GpW contain DNA-filled heads, and active tails, but no infectious virions. GpW is required for the addition of GpFII to the head, which is, in turn, required for the attachment of tails. Since GpFII and tails are known to be attached at the connector, GpW is also likely to assemble at this site. The addition of GpW to filled heads increases the DNase resistance of the packaged DNA, suggesting that GpW either forms a plug at the connector to prevent ejection of the DNA, or binds directly to the DNA. The large number of positively charged residues in GpW (its calculated pI is 10.8) is consistent with a role in DNA interaction [].; GO: 0019067 viral assembly, maturation, egress, and release; PDB: 2L6Q_A 2L6R_A 1HYW_A.
Probab=29.75 E-value=1.6e+02 Score=20.16 Aligned_cols=50 Identities=18% Similarity=0.263 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCc---eEEecHHHHHHHHHHhhhh
Q psy1918 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQK---FKTLDERETGHYLSLIEGE 244 (251)
Q Consensus 187 ~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~---~~~l~~~ei~~~l~~~~~~ 244 (251)
|+..|.+..+..|+.... +|..+ ..+..+|. +..-+-.++..++++|+.+
T Consensus 1 Mt~~~~L~~a~~A~h~L~------tG~~v--vsv~~dgrsV~Yt~a~i~~L~~yI~~L~~~ 53 (68)
T PF02831_consen 1 MTTQEQLAEARAAYHDLL------TGQRV--VSVQGDGRSVTYTQANIGDLRAYIQQLEAQ 53 (68)
T ss_dssp --CHHHHHHHHHHHHHHH------CS-SE--EEEEETTEEEEEEGGGHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHH------hCCce--eEeecCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 566777778888887664 23222 12777773 4445666777788888744
No 62
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=29.47 E-value=73 Score=24.30 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCc
Q psy1918 185 PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQK 225 (251)
Q Consensus 185 ~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~ 225 (251)
|.+|+++|.+++..++..+..+ +.++-|++|+..|.
T Consensus 1 p~l~~~~A~~l~~~a~~~a~~~-----g~~v~iaVvd~~G~ 36 (132)
T PF03928_consen 1 PSLTLEDAWKLGDAAVEEARER-----GLPVSIAVVDAGGH 36 (132)
T ss_dssp EEE-HHHHHHHHHHHHHHHHHT-----T---EEEEEETTS-
T ss_pred CCcCHHHHHHHHHHHHHHHHHh-----CCCeEEEEEECCCC
Confidence 4578999999999999888743 33688999999874
No 63
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=29.23 E-value=2.6e+02 Score=22.46 Aligned_cols=61 Identities=20% Similarity=0.267 Sum_probs=45.4
Q ss_pred CCeEEEECCCCCeeeeeEEEEc-CChHHHHHHHHHhhcC------------------CCCCCHHHHHHHHHHHHHhhCCC
Q psy1918 146 GPHIYQTCPSSNYYDVKAMAIG-SRSQSARTYLEKRLAD------------------FPEASLEEIVKHGLRALRDTLPN 206 (251)
Q Consensus 146 gp~ly~id~~G~~~~~~~~a~G-~g~~~a~~~L~~~~~~------------------~~~~s~~ea~~~~~~al~~~~~~ 206 (251)
+-.+..+.|-|...-..-...| ..++.+..++++.++. +.+.+++.|...|.+-|...+..
T Consensus 71 ~~~iI~~sPMGCrTGFYli~~g~~~~~~i~~l~~~~l~~i~~~~~eVPga~~~~CGny~~hsL~~Ak~~a~~~L~~~~~~ 150 (158)
T PRK02260 71 GVEIIDISPMGCRTGFYLILIGTPDEEDVADALKATLEDVLDDQEEVPGANEYQCGNYKDHSLEGAKEIARKILDQGISV 150 (158)
T ss_pred CceEEEECCCccccccEEEEeCCCCHHHHHHHHHHHHHHHHhhcCCCCCCChhcCCChhhCCHHHHHHHHHHHHHhhccc
Confidence 4567788888888888888888 6777777766655432 13668999999999999776644
No 64
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=29.14 E-value=82 Score=19.19 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=20.5
Q ss_pred eecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEE
Q psy1918 17 VWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVII 52 (251)
Q Consensus 17 ~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla 52 (251)
+-.|+|++.|+--. -..|.+.+..|+|+.
T Consensus 5 ii~~dG~~~q~~~~-------~a~ivl~GpSG~v~s 33 (40)
T PF08140_consen 5 IITPDGTNVQFPHG-------VANIVLIGPSGAVLS 33 (40)
T ss_pred eECCCCCEEECCcc-------cceEEEECCceEEee
Confidence 56899999995442 225677777888764
No 65
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=28.75 E-value=47 Score=25.89 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=26.4
Q ss_pred eeec-CCCcchhhchHHHHHhcCCcEEEeeeC
Q psy1918 16 TVWS-PQGRLHQVEYAMEAVKQGSATVGLKNK 46 (251)
Q Consensus 16 t~fs-p~G~l~QvEya~~a~~~G~tvigi~~~ 46 (251)
|.|| ++|..---||...|.++|-+.|||+=.
T Consensus 7 T~~s~~dg~~~~~e~v~~A~~~Gl~~i~iTDH 38 (175)
T PF02811_consen 7 TKYSILDGKDSPEEYVEQAKEKGLDAIAITDH 38 (175)
T ss_dssp -TTTSSTSSSSHHHHHHHHHHTTESEEEEEEE
T ss_pred ccCcchhhcCCHHHHHHHHHHcCCCEEEEcCC
Confidence 4678 899998889999999999999988765
No 66
>PF07104 DUF1366: Protein of unknown function (DUF1366); InterPro: IPR009796 This entry is represented by Streptococcus phage 7201, Orf40. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Streptococcus thermophilus bacteriophage proteins of around 130 residues in length. One of the sequences in this family, from phage Sfi11 (O80186 from SWISSPROT) is known as Gp149. The function of this family is unknown.
Probab=27.67 E-value=53 Score=24.98 Aligned_cols=52 Identities=12% Similarity=0.092 Sum_probs=34.9
Q ss_pred ECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCC
Q psy1918 152 TCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPN 206 (251)
Q Consensus 152 id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~ 206 (251)
.|++|+....+..-.|.....+--.|..-+ -+.+..|.+++|++.++....-
T Consensus 11 ~~~dGsv~~T~ViL~~~dGa~ip~~L~~D~---~~ks~~ELi~~ale~iy~e~~p 62 (116)
T PF07104_consen 11 YDPDGSVSKTKVILTNDDGAYIPVFLPGDK---IDKSNTELIELALEMIYQENFP 62 (116)
T ss_pred cCCCCCeeeeEEEEEcCCCcEEEeeCChhh---hcCCHHHHHHHHHHHHHHHhch
Confidence 467788777777777765444444444433 3678888888888888776543
No 67
>COG4728 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.89 E-value=74 Score=23.62 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=26.4
Q ss_pred eEEEcCcEEEEEeCcHHHHHHHHHHHHHHH
Q psy1918 68 IIVIDDHMGLSFAGLTADARILARFMRMEC 97 (251)
Q Consensus 68 i~~i~~~i~~~~sG~~~D~~~l~~~l~~~~ 97 (251)
+|+|-+++++.+.|..+|.-.+.+..++..
T Consensus 10 ~~~i~~~~gl~~v~~~~~~s~~~~k~~~~~ 39 (124)
T COG4728 10 IFKIKDKLGLTFVSKSADMSIQVEKAERLI 39 (124)
T ss_pred EEEEhhhcCcEEEEecchhHHHHHHHHHhh
Confidence 788999999999999999999998887654
No 68
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=24.78 E-value=81 Score=25.70 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=26.1
Q ss_pred ecCCCcchhhchH-HHHHhcCCcEEEeeeCCeEEEEE
Q psy1918 18 WSPQGRLHQVEYA-MEAVKQGSATVGLKNKTHAVIIA 53 (251)
Q Consensus 18 fsp~G~l~QvEya-~~a~~~G~tvigi~~~dgVvla~ 53 (251)
+||.|.-.-|=-| ..|.++|-++||+.++||--++.
T Consensus 116 ISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~~ 152 (176)
T COG0279 116 ISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLAG 152 (176)
T ss_pred EeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCccccc
Confidence 5777775444444 44567899999999999977653
No 69
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=24.62 E-value=83 Score=27.94 Aligned_cols=49 Identities=10% Similarity=0.064 Sum_probs=34.2
Q ss_pred EEEEeCCCCeEEEECCCCCeeee---eEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHH
Q psy1918 139 VAGYDDAGPHIYQTCPSSNYYDV---KAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHG 196 (251)
Q Consensus 139 v~G~d~~gp~ly~id~~G~~~~~---~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~ 196 (251)
|+|.|. .+..+|..|..... +.||.|.| .|||..-+. =+++++|.-+++
T Consensus 132 IGGQDs---K~I~~d~~G~v~dF~MNdkCAAGTG-----rFLE~~A~~-Lgi~leel~~~a 183 (293)
T TIGR03192 132 MGGQDC---KAIHCDEKGKVTNFLMNDKCAAGTG-----RGMEVISDL-MQIPIADLGPRS 183 (293)
T ss_pred eCCCce---EEEEEcCCCcEeeeeecCccccccc-----HHHHHHHHH-cCCCHHHHHHHH
Confidence 677774 58888999987755 68899998 466654332 257788766654
No 70
>PRK09732 hypothetical protein; Provisional
Probab=24.29 E-value=2.2e+02 Score=22.15 Aligned_cols=36 Identities=11% Similarity=-0.037 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCc
Q psy1918 185 PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQK 225 (251)
Q Consensus 185 ~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~ 225 (251)
+.+|++.|.+++..++..+.. .+..+.|+++|..|.
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~-----~g~~v~iaVvD~~G~ 40 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQK-----NNWSVSIAVADDGGH 40 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHH-----hCCCEEEEEEcCCCC
Confidence 579999999999999988863 245899999999884
No 71
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=23.03 E-value=2.9e+02 Score=19.78 Aligned_cols=50 Identities=16% Similarity=0.094 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC-ceEEecHHHHHHHHHHhh
Q psy1918 186 EASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ-KFKTLDERETGHYLSLIE 242 (251)
Q Consensus 186 ~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~-~~~~l~~~ei~~~l~~~~ 242 (251)
..+.++..+.+.+.+.. ..+.+|.|.+.+++| .+.+-+.+|+...+....
T Consensus 26 ~~s~~~L~~~V~~~f~~-------l~~~~ftlky~DeeGDlvtIssdeEL~~A~~~~~ 76 (87)
T cd06402 26 STSYEYLVEKVAAVFPS-------LRGKNFQLFWKDEEGDLVAFSSDEELVMALGSLN 76 (87)
T ss_pred CcCHHHHHHHHHHHccc-------cCCCcEEEEEECCCCCEEeecCHHHHHHHHHcCC
Confidence 45667777766665521 244699999999998 588888999988887654
No 72
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=22.62 E-value=1.2e+02 Score=25.25 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceE
Q psy1918 191 EIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFK 227 (251)
Q Consensus 191 ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~ 227 (251)
|++..++..|.+.+..|. .....++|+||+-+|..+
T Consensus 22 ealN~Glq~m~~~Lkqdp-~Ale~v~lsIVTF~~~a~ 57 (207)
T COG4245 22 EALNAGLQMMIDTLKQDP-YALERVELSIVTFGGPAR 57 (207)
T ss_pred HHHHHHHHHHHHHHHhCh-hhhheeEEEEEEecCcce
Confidence 567777777777777774 788899999999886544
No 73
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=22.57 E-value=1.2e+02 Score=25.08 Aligned_cols=38 Identities=34% Similarity=0.594 Sum_probs=28.5
Q ss_pred EEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q psy1918 164 MAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALR 201 (251)
Q Consensus 164 ~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~ 201 (251)
.+.|.....+...+++.....++.+.+|.+..|++.|+
T Consensus 160 ~~LGy~~~ea~~al~~i~~~~~~~~~e~lir~aLk~l~ 197 (197)
T PRK14603 160 LALGFREAQVRSVVAELLAQNPEASAQTLIRKALKRLR 197 (197)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Confidence 35688888899888887543357888888888887653
No 74
>PRK05578 cytidine deaminase; Validated
Probab=22.35 E-value=3.1e+02 Score=21.09 Aligned_cols=37 Identities=11% Similarity=0.244 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCce
Q psy1918 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKF 226 (251)
Q Consensus 187 ~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~ 226 (251)
|+.++.++.|+++++.+.- +++.-.+=.++.+++|++
T Consensus 1 ~~~~~L~~~a~~~~~~ay~---PyS~f~Vgaa~~~~~G~i 37 (131)
T PRK05578 1 MDWKELIEAAIEASEKAYA---PYSKFPVGAALLTDDGRI 37 (131)
T ss_pred CCHHHHHHHHHHHHHhcCC---CcCCCceEEEEEeCCCCE
Confidence 4567889999999987763 345545666777888854
No 75
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=22.33 E-value=1.3e+02 Score=19.26 Aligned_cols=29 Identities=14% Similarity=0.335 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEec
Q psy1918 186 EASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQ 222 (251)
Q Consensus 186 ~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~ 222 (251)
.-|++||++.|.+-|.. ..+.+++-++.+
T Consensus 4 gkt~eeAi~~A~~~l~~--------~~~~~~~eVi~~ 32 (52)
T PF14804_consen 4 GKTVEEAIEKALKELGV--------PREELEYEVIEE 32 (52)
T ss_dssp ESSHHHHHHHHHHHTT----------GGGEEEEEEE-
T ss_pred ECCHHHHHHHHHHHhCC--------ChHHEEEEEEEc
Confidence 46899999999988842 334788888886
No 76
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=21.99 E-value=91 Score=29.14 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=35.9
Q ss_pred EEEEeCCCCeEEEECCCCCeeee---eEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q psy1918 139 VAGYDDAGPHIYQTCPSSNYYDV---KAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRA 199 (251)
Q Consensus 139 v~G~d~~gp~ly~id~~G~~~~~---~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~a 199 (251)
|+|.|. .+..+|..|..... +.||.|.| .|||..-+. =+++++|.-.++.++
T Consensus 274 IGGQDs---K~I~ld~~G~V~dF~MNDKCAAGTG-----rFLE~mA~~-Lgi~leEl~~lA~~a 328 (432)
T TIGR02259 274 IGGQDT---KGIQIDDHGIVENFQMNDRCAAGCG-----RYLGYIADE-MNMGLHELGPLAMKS 328 (432)
T ss_pred eCCCce---EEEEEcCCCcEeeeeecCcccccch-----HHHHHHHHH-cCCCHHHHHHHHhcC
Confidence 677764 48899999987744 68899998 455554332 267888777765554
No 77
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin. rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines
Probab=21.25 E-value=1.6e+02 Score=21.18 Aligned_cols=48 Identities=8% Similarity=0.098 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHH
Q psy1918 185 PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238 (251)
Q Consensus 185 ~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l 238 (251)
..++..|.++..++=++.. .+..++-++.+..+|..++|..+|-.=++
T Consensus 21 S~~tt~eVI~~LL~KFkv~------~~p~~FALy~vh~~Ge~rkL~d~E~PL~~ 68 (87)
T cd01784 21 STMTTPQVLKLLLNKFKIE------NSAEEFALYIVHTSGEKRKLKATDYPLIA 68 (87)
T ss_pred cCCCHHHHHHHHHHhcccc------CCHHHeEEEEEeeCCCEEECCCcCCCeeh
Confidence 3677777777766666543 24568999999998888999888754333
No 78
>KOG3652|consensus
Probab=21.14 E-value=2.7e+02 Score=27.89 Aligned_cols=113 Identities=15% Similarity=0.111 Sum_probs=65.0
Q ss_pred eCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCee
Q psy1918 80 AGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYY 159 (251)
Q Consensus 80 sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~ 159 (251)
+|-.+-+-.+++.+.. ...|+++....|.++.+..+|-.... -|-|..+++.+=-+||.||+.|-.|.-.
T Consensus 193 AGRAaAc~sLcRIfcS------KksgEeIl~a~LS~FY~ll~Q~Lq~k----dyvchpmLasl~ln~p~LFccdLkGId~ 262 (1215)
T KOG3652|consen 193 AGRAAACASLCRIFCS------KKSGEEILNAQLSNFYALLFQCLQEK----DYVCHPMLASLFLNGPNLFCCDLKGIDS 262 (1215)
T ss_pred hhHHHHHHHHHHhhhc------ccCcccccHHHHHHHHHHHHHHHhhc----ccccchhheeeeecCCceeeecCCchhH
Confidence 4544444444444321 34778999999999988887644332 3455555655545789999999988643
Q ss_pred eeeEEEEcCChHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHHhhCC
Q psy1918 160 DVKAMAIGSRSQSARTYLEKRLADFPEAS-LEEIVKHGLRALRDTLP 205 (251)
Q Consensus 160 ~~~~~a~G~g~~~a~~~L~~~~~~~~~~s-~~ea~~~~~~al~~~~~ 205 (251)
-..+.....--..+-. +..++++..+ ..|.-..++++|...+.
T Consensus 263 llP~Fi~ALd~il~dr---e~~rkfkS~~n~tElRRa~in~LlSli~ 306 (1215)
T KOG3652|consen 263 LLPHFIFALDIILIDR---EKLRKFKSISNETELRRACINALLSLIC 306 (1215)
T ss_pred hhHHHHHHHHhhhccH---HHhhhccccCCHHHHHHHHHHHHHHhcc
Confidence 2221110000000000 1223345555 66888888888877764
No 79
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=20.96 E-value=4.2e+02 Score=20.89 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=57.6
Q ss_pred CeEE-EECCCCCeeeeeEEEEcCChHHHHH-HHHHhhcCCCCCCHHHHHHHH--HHHHHhhCCCCCCCCCCeEEEE--E-
Q psy1918 147 PHIY-QTCPSSNYYDVKAMAIGSRSQSART-YLEKRLADFPEASLEEIVKHG--LRALRDTLPNDSELTTKNVSIG--L- 219 (251)
Q Consensus 147 p~ly-~id~~G~~~~~~~~a~G~g~~~a~~-~L~~~~~~~~~~s~~ea~~~~--~~al~~~~~~d~~~~~~~iei~--i- 219 (251)
-.|| .+| .|.+....|-..|.+...|-+ .+-+... +.|++||.++. ...+-.....+..-.-..+.+. +
T Consensus 43 i~l~lkv~-~~~I~d~~F~~~GC~is~ASss~~te~v~---Gkti~EAl~i~~~~~~m~~~~~~~~~~~l~d~~~l~~v~ 118 (150)
T COG0822 43 ITLYLKVD-NGVIEDAKFKGFGCAISIASSSMMTELVK---GKTLDEALKITEAFTDMAKELGGDPDDRLGDLVALAGVA 118 (150)
T ss_pred EEEEEEEc-CCEEEEEEeeecCcHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHcCCCccchhhhhHhhhhhc
Confidence 3455 455 888888899999987666655 4444444 89999999988 5556554432210000111110 0
Q ss_pred EecCC-ceEEecHHHHHHHHHHhhhhhh
Q psy1918 220 VGQNQ-KFKTLDERETGHYLSLIEGEER 246 (251)
Q Consensus 220 i~~~~-~~~~l~~~ei~~~l~~~~~~~~ 246 (251)
..+.+ .+-.|..+-++..+.++....+
T Consensus 119 ~~p~r~~C~~L~~~al~~ai~~~~~~~~ 146 (150)
T COG0822 119 LPPARIKCSLLAWDALKAAIKDYKGKAE 146 (150)
T ss_pred cccccccchhccHHHHHHHHHHhhcccc
Confidence 11222 3667888889888888775543
No 80
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=20.87 E-value=2.1e+02 Score=21.23 Aligned_cols=28 Identities=11% Similarity=0.265 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCC-CCCHHHH
Q psy1918 86 ARILARFMRMECLNYKYAHKD-TLPVFRL 113 (251)
Q Consensus 86 ~~~l~~~l~~~~~~~~~~~~~-~i~~~~l 113 (251)
+..++..++.+++.|.+..++ ++|++.|
T Consensus 49 c~A~vkmV~sQ~~~YeLdh~~~~pSl~~L 77 (107)
T COG4537 49 CEAVVKMVESQAEAYELDHNRLPPSLSDL 77 (107)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 456778888888999988887 7777665
No 81
>smart00759 Flu_M1_C Influenza Matrix protein (M1) C-terminal domain. This region is thought to be a second domain of the M1 matrix protein.
Probab=20.68 E-value=2.9e+02 Score=19.75 Aligned_cols=51 Identities=8% Similarity=-0.074 Sum_probs=39.9
Q ss_pred EEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcC
Q psy1918 78 SFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128 (251)
Q Consensus 78 ~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~ 128 (251)
|.|--.+|++.+.+.++..+..-+...-.+-+-..+++-|-..++.|..+.
T Consensus 37 gsse~aa~ameiA~qa~~mi~alRsiGahp~s~~Gi~dDllEnLq~~q~~m 87 (95)
T smart00759 37 GSSEKAADAMEIAEEAQQMIGALRSIGAHPKSGAGIADDLLENLKASQKGM 87 (95)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHhhhh
Confidence 344467899999999999888877655566677888998888888887654
No 82
>KOG2445|consensus
Probab=20.58 E-value=1.5e+02 Score=26.64 Aligned_cols=52 Identities=25% Similarity=0.267 Sum_probs=30.1
Q ss_pred cEEEeeeCCeEEEEEeccCccc-----------ccc-ccCceEEEcCc-------------EEEEEeCcHHHHHHHH
Q psy1918 39 ATVGLKNKTHAVIIALKRAASE-----------LAA-HQKKIIVIDDH-------------MGLSFAGLTADARILA 90 (251)
Q Consensus 39 tvigi~~~dgVvla~d~~~~~~-----------l~~-~~~Ki~~i~~~-------------i~~~~sG~~~D~~~l~ 90 (251)
-+||+.++|||=|..-+.+.+. +.+ ..+||-.+++| +.++.+|.-+=++-..
T Consensus 240 ~~lAvA~kDgv~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 240 HLLAVATKDGVRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred eeEEEeecCcEEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence 4799999999766655532211 112 34566666665 3466677665554433
No 83
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=20.57 E-value=1.5e+02 Score=19.90 Aligned_cols=32 Identities=6% Similarity=-0.078 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q psy1918 90 ARFMRMECLNYKYAHKDTLPVFRLISIVGNKM 121 (251)
Q Consensus 90 ~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~ 121 (251)
++.+++.........|+.++.+.+|..+.-..
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lgis~ 34 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELGISV 34 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHTS-H
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHcccH
Confidence 34555555666677899999999999876444
No 84
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=20.39 E-value=1.3e+02 Score=18.15 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=17.6
Q ss_pred EcCChHHHHHHHHHhhcCCCCCCHHHHHHH
Q psy1918 166 IGSRSQSARTYLEKRLADFPEASLEEIVKH 195 (251)
Q Consensus 166 ~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~ 195 (251)
+|.....|+.+|+.. +.+++.|+..
T Consensus 11 Tg~~~~~A~~~L~~~-----~wdle~Av~~ 35 (43)
T PF14555_consen 11 TGADEDVAIQYLEAN-----NWDLEAAVNA 35 (43)
T ss_dssp H-SSHHHHHHHHHHT-----TT-HHHHHHH
T ss_pred HCcCHHHHHHHHHHc-----CCCHHHHHHH
Confidence 567778889999885 6777777764
No 85
>PF07661 MORN_2: MORN repeat variant; InterPro: IPR011652 This entry represents an apparent variant of the IPR003409 from INTERPRO repeat.
Probab=20.09 E-value=43 Score=16.56 Aligned_cols=14 Identities=14% Similarity=0.356 Sum_probs=10.5
Q ss_pred CceeecCCCcchhh
Q psy1918 14 DVTVWSPQGRLHQV 27 (251)
Q Consensus 14 ~~t~fsp~G~l~Qv 27 (251)
..+.|.|+|+|.+.
T Consensus 4 ~~~~yy~nG~l~~~ 17 (22)
T PF07661_consen 4 EWKFYYENGKLKSE 17 (22)
T ss_pred eEEEEeCCCCEEEE
Confidence 34678999998664
Done!