Query psy1918
Match_columns 251
No_of_seqs 119 out of 1114
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 19:36:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1918.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1918hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iru_F 20S proteasome; cell cy 100.0 5.3E-65 1.8E-69 441.5 26.7 238 6-243 1-238 (263)
2 1ryp_F 20S proteasome; multica 100.0 2.2E-64 7.7E-69 430.5 24.5 231 7-238 1-233 (233)
3 1ryp_A 20S proteasome; multica 100.0 8.5E-64 2.9E-68 429.4 28.0 234 9-245 1-243 (243)
4 1yar_A Proteasome alpha subuni 100.0 1.3E-63 4.4E-68 425.8 27.5 230 5-238 2-233 (233)
5 1j2p_A Alpha-ring, proteasome 100.0 3.4E-63 1.2E-67 426.4 30.0 236 6-246 3-241 (246)
6 1iru_B 20S proteasome; cell cy 100.0 4.4E-63 1.5E-67 422.5 28.0 229 8-241 2-232 (233)
7 1iru_E 20S proteasome; cell cy 100.0 3.4E-63 1.2E-67 425.1 27.0 233 5-241 2-241 (241)
8 1iru_A 20S proteasome; cell cy 100.0 1.1E-62 3.9E-67 423.1 30.0 237 6-244 3-245 (246)
9 3h4p_A Proteasome subunit alph 100.0 8.2E-64 2.8E-68 433.9 22.1 237 5-246 6-245 (264)
10 1iru_C 20S proteasome; cell cy 100.0 2.3E-62 7.9E-67 424.6 29.3 234 9-245 3-244 (261)
11 1ryp_C 20S proteasome; multica 100.0 4.5E-62 1.5E-66 418.9 30.6 231 10-243 4-243 (244)
12 1ryp_D 20S proteasome; multica 100.0 4.4E-62 1.5E-66 418.2 29.6 233 10-246 1-239 (241)
13 1iru_G 20S proteasome; cell cy 100.0 7.2E-62 2.5E-66 419.9 27.6 236 8-246 4-244 (254)
14 1iru_D 20S proteasome; cell cy 100.0 5.2E-62 1.8E-66 419.5 26.0 232 11-248 3-239 (248)
15 1ryp_E 20S proteasome; multica 100.0 2E-61 6.8E-66 414.4 27.9 232 12-247 1-241 (242)
16 1ryp_G 20S proteasome; multica 100.0 2.3E-60 7.8E-65 408.3 28.5 231 9-243 2-240 (244)
17 1ryp_B 20S proteasome; multica 100.0 3.6E-60 1.2E-64 408.5 29.1 229 9-241 3-250 (250)
18 3nzj_F Proteasome component C1 100.0 2.6E-60 8.9E-65 415.9 27.7 228 8-238 5-240 (288)
19 1q5q_A Proteasome alpha-type s 100.0 6.7E-52 2.3E-56 358.4 21.1 221 15-246 4-240 (259)
20 3mi0_A Proteasome subunit alph 100.0 3.4E-49 1.2E-53 339.0 26.5 213 19-242 8-238 (248)
21 3h4p_a Proteasome subunit beta 100.0 6.4E-48 2.2E-52 325.9 23.0 205 37-249 1-210 (219)
22 1yar_H Proteasome beta subunit 100.0 8.3E-47 2.8E-51 318.6 25.1 203 32-242 3-208 (217)
23 1j2q_H Proteasome beta subunit 100.0 1.4E-46 4.9E-51 313.7 25.5 198 38-243 1-202 (202)
24 3nzj_K Proteasome component PR 100.0 8.3E-47 2.8E-51 330.2 22.2 220 19-246 51-280 (287)
25 1q5r_H Proteasome beta-type su 100.0 1.8E-46 6.2E-51 329.1 22.8 216 30-250 58-291 (294)
26 2jay_A Proteasome; hydrolase; 100.0 1.7E-46 5.9E-51 329.0 22.4 233 8-246 22-279 (291)
27 1iru_L 20S proteasome; cell cy 100.0 7.1E-46 2.4E-50 310.0 22.4 200 38-245 1-203 (204)
28 1iru_N 20S proteasome; cell cy 100.0 1.2E-46 4E-51 318.1 16.1 204 31-238 2-209 (219)
29 1q5q_H Proteasome beta-type su 100.0 1.8E-45 6.3E-50 314.0 23.6 208 38-250 1-226 (235)
30 1ryp_L 20S proteasome; multica 100.0 2.2E-45 7.4E-50 308.8 22.5 202 38-247 1-206 (212)
31 1ryp_N 20S proteasome; multica 100.0 3E-46 1E-50 318.4 14.3 204 31-237 2-217 (233)
32 1iru_H 20S proteasome; cell cy 100.0 8.2E-45 2.8E-49 303.8 19.1 194 38-239 1-199 (205)
33 3nzj_H Proteasome component PU 100.0 6.9E-44 2.4E-48 308.1 23.7 196 30-233 22-220 (261)
34 1g0u_M Proteasome component PR 100.0 1.5E-45 5.1E-50 319.9 13.2 208 27-237 31-250 (266)
35 1iru_M 20S proteasome; cell cy 100.0 1.2E-43 4.1E-48 298.3 23.9 189 34-228 6-205 (213)
36 3unf_H Proteasome subunit beta 100.0 4.2E-44 1.4E-48 305.2 21.0 190 38-236 1-193 (234)
37 1ryp_K 20S proteasome; multica 100.0 1.4E-43 4.8E-48 294.7 22.1 188 38-231 2-194 (198)
38 1ryp_H 20S proteasome; multica 100.0 1.3E-43 4.4E-48 296.5 20.3 186 31-225 3-192 (205)
39 1ryp_M 20S proteasome; multica 100.0 8.3E-43 2.8E-47 295.1 23.5 187 34-228 6-214 (222)
40 1iru_J 20S proteasome; cell cy 100.0 1.6E-42 5.4E-47 289.9 23.7 184 34-224 5-194 (205)
41 1ryp_I 20S proteasome; multica 100.0 1.3E-42 4.4E-47 294.0 23.4 188 38-233 1-191 (222)
42 1ryp_J 20S proteasome; multica 100.0 3.1E-42 1.1E-46 287.9 25.2 183 34-224 5-193 (204)
43 3unf_N Proteasome subunit beta 100.0 5.9E-43 2E-47 291.1 16.3 191 38-238 1-197 (199)
44 1iru_K 20S proteasome; cell cy 100.0 1.1E-41 3.9E-46 283.9 21.7 188 38-231 2-193 (201)
45 1iru_I 20S proteasome; cell cy 100.0 1.8E-41 6E-46 289.1 22.3 187 38-233 1-190 (234)
46 2z3b_A ATP-dependent protease 100.0 8.3E-35 2.9E-39 238.5 18.1 167 35-220 3-179 (180)
47 1m4y_A ATP-dependent protease 100.0 7.7E-34 2.6E-38 230.8 18.9 165 38-220 1-171 (171)
48 1g3k_A ATP-dependent protease 100.0 1E-33 3.5E-38 230.8 18.1 166 38-221 1-173 (174)
49 1vd2_A Protein kinase C, IOTA 65.3 17 0.00057 25.3 5.8 54 185-245 24-78 (89)
50 3rj2_X ORF158L protein, putati 64.4 1.4 4.8E-05 32.4 0.0 24 3-26 46-70 (138)
51 3jx9_A Putative phosphoheptose 41.3 16 0.00054 28.5 2.6 30 16-45 82-112 (170)
52 2yxo_A Histidinol phosphatase; 29.9 31 0.0011 27.9 2.8 33 16-48 8-40 (267)
53 3hvz_A Uncharacterized protein 25.1 18 0.00062 24.3 0.4 41 11-52 4-52 (78)
54 4gof_A Small glutamine-rich te 24.7 1E+02 0.0034 19.0 3.8 34 173-207 9-44 (52)
55 4asv_A Small glutamine-rich te 22.5 1.3E+02 0.0045 20.8 4.4 35 172-207 25-61 (92)
56 2lxb_A Small glutamine-rich te 20.6 1.6E+02 0.0055 19.5 4.4 35 172-207 13-49 (74)
No 1
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=5.3e-65 Score=441.51 Aligned_cols=238 Identities=66% Similarity=1.105 Sum_probs=226.0
Q ss_pred cccccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccccccCceEEEcCcEEEEEeCcHHH
Q psy1918 6 KFRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTAD 85 (251)
Q Consensus 6 ~~~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~~~~~Ki~~i~~~i~~~~sG~~~D 85 (251)
|||++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++.++.+||++|++|++|++||+.+|
T Consensus 1 m~~~~yd~~~t~fsP~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl~~~~~KI~~i~~~i~~~~aG~~aD 80 (263)
T 1iru_F 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTAD 80 (263)
T ss_dssp ---CTTTSCTTCCCTTSCCHHHHHHHHHHHHSCCEEEEECSSEEEEEEECCCSSTTBCCCCCEEEEETTEEEEEEECHHH
T ss_pred CCcCCCCCCCccCCCCCeehHHHHHHHHHHcCCcEEEEEeCCEEEEEEecccccccccchhcEEEEcCCEEEEEeCCHHH
Confidence 89999999999999999999999999999999999999999999999999999998888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEE
Q psy1918 86 ARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMA 165 (251)
Q Consensus 86 ~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a 165 (251)
++.+.++++.+++.|++.++++++++.+++++++.++.|+++.+.|||++++||||||++||+||.+||+|++.+++++|
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~a 160 (263)
T 1iru_F 81 ARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMS 160 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECSSSCEEEESEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcCCCCEEEEECCCCCEEEeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred EcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhh
Q psy1918 166 IGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEG 243 (251)
Q Consensus 166 ~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~ 243 (251)
+|+|++.++++|++.|+++++|+++||++++++||+.++++|...++.+++|++|+++++|++++++||+.++..+..
T Consensus 161 iGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~~l~~~ei~~~~~~~~~ 238 (263)
T 1iru_F 161 IGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEE 238 (263)
T ss_dssp ESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEECSGGGHHHHTTCCC
T ss_pred cCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeEECCHHHHHHHHHHHhc
Confidence 999999999999999983349999999999999999999998326788999999999866999999999999999863
No 2
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=2.2e-64 Score=430.47 Aligned_cols=231 Identities=48% Similarity=0.785 Sum_probs=220.5
Q ss_pred ccccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccccccCceEEEcCcEEEEEeCcHHHH
Q psy1918 7 FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADA 86 (251)
Q Consensus 7 ~~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~~~~~Ki~~i~~~i~~~~sG~~~D~ 86 (251)
||++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++.++.+||++|++|++|++||+.+|+
T Consensus 1 ~~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~Ki~~i~~~i~~~~aG~~aD~ 80 (233)
T 1ryp_F 1 FRNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQKKIIKCDEHMGLSLAGLAPDA 80 (233)
T ss_dssp CHHHHSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSEEEEEEECCCSSTTBCCCCCEEEEETTEEEEEEECHHHH
T ss_pred CCCcccCCCccCCCCCeehHHHHHHHHHHcCCCEEEEEcCCEEEEEEEeccccccccccCcEEEEcCCEEEEEEechHHH
Confidence 68899999999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEE
Q psy1918 87 RILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAI 166 (251)
Q Consensus 87 ~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~ 166 (251)
+.+.+.++.+++.|++.+++++|++.+++++++.+|.|+++.+.|||++++||||||++||+||.+||+|++.+++++|+
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~ai 160 (233)
T 1ryp_F 81 RVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAI 160 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECTTSCEEEESEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCCcCEEEEECCCCCeeeeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred cCChHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHH
Q psy1918 167 GSRSQSARTYLEKRLADFPEA--SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238 (251)
Q Consensus 167 G~g~~~a~~~L~~~~~~~~~~--s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l 238 (251)
|+|++.++++||+.|++.++| +++||++++++||+.++ +|...++.+++|++|+++++|++++++||+++|
T Consensus 161 G~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~~~~l~~~ei~~~l 233 (233)
T 1ryp_F 161 GARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI 233 (233)
T ss_dssp STTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEEEEEEEGGGGGGGC
T ss_pred CCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCCEEECCHHHHHhhC
Confidence 999999999999999832389 99999999999999999 773368999999999999679999999998764
No 3
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=8.5e-64 Score=429.41 Aligned_cols=234 Identities=30% Similarity=0.471 Sum_probs=222.5
Q ss_pred ccCCCCceeecCCCcchhhchHHHHHhc-CCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHH
Q psy1918 9 NQYDSDVTVWSPQGRLHQVEYAMEAVKQ-GSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTAD 85 (251)
Q Consensus 9 ~~yd~~~t~fsp~G~l~QvEya~~a~~~-G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D 85 (251)
++||+++|+|||||||+|||||++|+++ |+|+|||+++||||||+|+|.+.++. ++.+|||+|++|++|++||+.+|
T Consensus 1 ~~yd~~~t~fsp~Grl~QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 80 (243)
T 1ryp_A 1 AGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPD 80 (243)
T ss_dssp CGGGGTSSSCCTTSCCHHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCCCTTBCGGGCCSEEECSSSCEEEEESCHHH
T ss_pred CCCCCCCceECCCCeeHHHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCCccccCCCcCCceEEECCCEEEEEEecHHH
Confidence 5899999999999999999999999999 99999999999999999999997664 57899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEE
Q psy1918 86 ARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAM 164 (251)
Q Consensus 86 ~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~ 164 (251)
++.+.+.++.+++.|++.++++++++.+++++++.+|.|+++++.|||+|++||||||+ +||+||.+||+|++.+++++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~ 160 (243)
T 1ryp_A 81 ARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKAT 160 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999996 78999999999999999999
Q ss_pred EEcCChHHHHHHHHHhhcCCC-----CCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHH
Q psy1918 165 AIGSRSQSARTYLEKRLADFP-----EASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLS 239 (251)
Q Consensus 165 a~G~g~~~a~~~L~~~~~~~~-----~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~ 239 (251)
|+|++++.++++||+.|++++ +||++||++++++||..+++|| .++.+++|++|+++| |++++++||++++.
T Consensus 161 a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd--~s~~~iev~vi~~~g-~~~l~~~ei~~~~~ 237 (243)
T 1ryp_A 161 ATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTE--FSKNDLEVGVATKDK-FFTLSAENIEERLV 237 (243)
T ss_dssp EESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCC--CCTTSEEEEEEETTE-EEECCHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhccc--CCCCcEEEEEEECCC-eEECCHHHHHHHHH
Confidence 999999999999999998311 8999999999999999999998 478999999999997 99999999999999
Q ss_pred Hhhhhh
Q psy1918 240 LIEGEE 245 (251)
Q Consensus 240 ~~~~~~ 245 (251)
.+++++
T Consensus 238 ~~~~~~ 243 (243)
T 1ryp_A 238 AIAEQD 243 (243)
T ss_dssp HHTTTC
T ss_pred HhhccC
Confidence 996553
No 4
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=1.3e-63 Score=425.75 Aligned_cols=230 Identities=34% Similarity=0.523 Sum_probs=211.2
Q ss_pred ccccccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCc
Q psy1918 5 WKFRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGL 82 (251)
Q Consensus 5 ~~~~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~ 82 (251)
.|+|++||+++|+|||||||+|||||.+|+++|+|+|||+++||||||+|++.++++. ++.+||++|++|++|++||.
T Consensus 2 ~m~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~~~~~~~~~Ki~~i~~~i~~~~aG~ 81 (233)
T 1yar_A 2 QQGQMAYSRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGL 81 (233)
T ss_dssp -----------CCCCTTSCCHHHHHHHHHHTTSCCEEEEEETTEEEEEECCCCCCTTBCSTTCCSEEEEETTEEEEEEEB
T ss_pred CcccccCCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEeccCCcccccccccCeEEEecCCEEEEEeeC
Confidence 4889999999999999999999999999999999999999999999999999999875 46799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeee
Q psy1918 83 TADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVK 162 (251)
Q Consensus 83 ~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~ 162 (251)
.+|++.+.++++.+++.|++.++++++++.+++++++.++.|+++.+.|||++++||||||++||+||.+||.|++.+++
T Consensus 82 ~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~ 161 (233)
T 1yar_A 82 VADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYK 161 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCEEEEEECTTCCEEEBS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCCCCEEEEECCCCCEEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred EEEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHH
Q psy1918 163 AMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238 (251)
Q Consensus 163 ~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l 238 (251)
++|+|+|++.++++|++.|+ ++|+++||++++++||+.++++|. ++.+++|++|+++++|++++++||+++|
T Consensus 162 ~~aiG~gs~~a~~~Le~~~~--~~~s~eea~~la~~al~~~~~~d~--s~~~i~v~vi~~~~~~~~~~~~ei~~~l 233 (233)
T 1yar_A 162 ATAIGSGKDAVVSFLEREYK--ENLPEKEAVTLGIKALKSSLEEGE--ELKAPEIASITVGNKYRIYDQEEVKKFL 233 (233)
T ss_dssp EEEESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHTSCSSC--CCCCCEEEEEETTSCCEECCHHHHHTTC
T ss_pred EEEEcCCcHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHhhccC--CCCcEEEEEEECCCCEEECCHHHHHhhC
Confidence 99999999999999999998 699999999999999999999984 6889999999999779999999998764
No 5
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=3.4e-63 Score=426.41 Aligned_cols=236 Identities=34% Similarity=0.500 Sum_probs=225.0
Q ss_pred cccccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcH
Q psy1918 6 KFRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLT 83 (251)
Q Consensus 6 ~~~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~ 83 (251)
|++++||+++|+|||||||+|||||.+|+++|+|+|||+++||||||+|++.+.++. ++.+||++|+++++|+++|..
T Consensus 3 ~~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~ 82 (246)
T 1j2p_A 3 LPQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLV 82 (246)
T ss_dssp -CCTTSSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCTTBCGGGCCSEEECSSSEEEEEEECH
T ss_pred ccccCcCCCCceECCCCeehHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCccccccCccCcEEEECCCEEEEEeEcc
Confidence 668999999999999999999999999999999999999999999999999999874 578999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeE
Q psy1918 84 ADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKA 163 (251)
Q Consensus 84 ~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~ 163 (251)
+|++.+.+.++.+++.|++.++++++++.+++++++.+|.|+++.+.|||++++|||||| +||+||.+||.|++.++++
T Consensus 83 aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~ 161 (246)
T 1j2p_A 83 ADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN-EVPKLYETDPSGALLEYKA 161 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES-SSEEEEEECTTCCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC-CCCEEEEECCCceEEeeeE
Confidence 999999999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred EEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEe-cCCceEEecHHHHHHHHHHhh
Q psy1918 164 MAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVG-QNQKFKTLDERETGHYLSLIE 242 (251)
Q Consensus 164 ~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~-~~~~~~~l~~~ei~~~l~~~~ 242 (251)
+|+|+|++.++++|++.|+ ++|+++||++++++||..++++ . .++.+++|++|+ ++++|++++++||++++.++.
T Consensus 162 ~aiGsgs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~~-~-~sg~~i~v~vi~~~~~~~~~l~~~ei~~~~~~~~ 237 (246)
T 1j2p_A 162 TAIGMGRMAVTEFFEKEYR--DDLSFDDAMVLGLVAMGLSIES-E-LVPENIEVGYVKVDDRTFKEVSPEELKPYVERAN 237 (246)
T ss_dssp EEESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHHHTS-C-CCGGGEEEEEEETTTCCCEECCHHHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHhhc-c-CCCCcEEEEEEEcCCCceEECCHHHHHHHHHHHH
Confidence 9999999999999999998 6999999999999999999987 3 689999999999 766799999999999999997
Q ss_pred hhhh
Q psy1918 243 GEER 246 (251)
Q Consensus 243 ~~~~ 246 (251)
++++
T Consensus 238 ~~~~ 241 (246)
T 1j2p_A 238 ERIR 241 (246)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 6
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=4.4e-63 Score=422.47 Aligned_cols=229 Identities=31% Similarity=0.568 Sum_probs=220.6
Q ss_pred cccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHH
Q psy1918 8 RNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTAD 85 (251)
Q Consensus 8 ~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D 85 (251)
|++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.+.++. ++.+||++|++|++|++||..+|
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 81 (233)
T 1iru_B 2 ERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPD 81 (233)
T ss_dssp CCCCCSBSCCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSCEEEEEECCCCCSSBCSTTCCSSEESSSSEEEEEEECHHH
T ss_pred CCCccCCceeECCCCeEehhHhHHHHHHcCCcEEEEEeCCEEEEEEEecCCccccccccCCeEEEECCCEEEEEEEccHH
Confidence 7899999999999999999999999999999999999999999999999997764 47899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEE
Q psy1918 86 ARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMA 165 (251)
Q Consensus 86 ~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a 165 (251)
++.+.++++.+++.|++.++++++++.+++++++.+|.|+++.+.|||++++||||||++||+||.+||.|++.+++++|
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~a 161 (233)
T 1iru_B 82 YRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATA 161 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSEEEEEECTTSCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeCCCCeEEEECCCCCEEEeeEEE
Confidence 99999999999999999999999999999999999999999988999999999999998899999999999999999999
Q ss_pred EcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHh
Q psy1918 166 IGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLI 241 (251)
Q Consensus 166 ~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~ 241 (251)
+|+|++.++++|++.|+ ++|+++||++++++||+.++++| .++++++|++|+++| +++++++||++++..+
T Consensus 162 iG~gs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~~d--~sg~~i~v~vi~~~g-~~~l~~~ei~~~~~~~ 232 (233)
T 1iru_B 162 MGKNYVNGKTFLEKRYN--EDLELEDAIHTAILTLKESFEGQ--MTEDNIEVGICNEAG-FRRLTPTEVKDYLAAI 232 (233)
T ss_dssp ESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHTTCCSC--CCSSSEEEEEEETTE-EEECCHHHHHHHHTTC
T ss_pred ECCCCHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHhhcc--CCCCCEEEEEEECCC-EEECCHHHHHHHHHhc
Confidence 99999999999999999 69999999999999999999998 468899999999997 9999999999999765
No 7
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=3.4e-63 Score=425.13 Aligned_cols=233 Identities=32% Similarity=0.523 Sum_probs=218.6
Q ss_pred ccccccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCc
Q psy1918 5 WKFRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGL 82 (251)
Q Consensus 5 ~~~~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~ 82 (251)
.|+|++||+++|+|||||||+|||||.+|+++|+|+|||+++||||||+|++.++++. ++.+||++|+++++|++||+
T Consensus 2 ~m~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~ 81 (241)
T 1iru_E 2 FLTRSEYDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGL 81 (241)
T ss_dssp ------CCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBCTTSCCSEEEEETTEEEEEEEC
T ss_pred CCccCCCCCCCceECCCCccHHHHHHHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcCccccceEEEEcCCEEEEEeeC
Confidence 3789999999999999999999999999999999999999999999999999999974 57899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCC-----CCcceeeeeEEEEeCCCCeEEEECCCCC
Q psy1918 83 TADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYD-----KRPYGVGLLVAGYDDAGPHIYQTCPSSN 157 (251)
Q Consensus 83 ~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~-----~rP~~v~~iv~G~d~~gp~ly~id~~G~ 157 (251)
.+|++.+.++++.+++.|++.++++++++.+++++++.+|.|+++.+ .|||++++||||||++||+||.+||.|+
T Consensus 82 ~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~~gp~Ly~idp~G~ 161 (241)
T 1iru_E 82 IADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGT 161 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEEEEEEECTTSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeCCCCEEEEECCCCc
Confidence 99999999999999999999999999999999999999999999888 8999999999999988899999999999
Q ss_pred eeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHH
Q psy1918 158 YYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHY 237 (251)
Q Consensus 158 ~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~ 237 (251)
+.+++++|+|+|++.++++|++.|+ ++|+++||++++++||..+++++ .++.+++|++|++++.|++++++||+++
T Consensus 162 ~~~~~~~aiGsgs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~~~--~sg~~i~v~vi~~~~~~~~l~~~ei~~~ 237 (241)
T 1iru_E 162 FVQCDARAIGSASEGAQSSLQELYH--KSMTLKEAIKSSLIILKQVMEEK--LNATNIELATVQPGQNFHMFTKEELEEV 237 (241)
T ss_dssp EEEBSEEEESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHHCSSC--CCTTSEEEEEECSSSCCEECCHHHHHHH
T ss_pred EEecceEEECCCcHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHhhcc--CCCCCEEEEEEECCCCeEECCHHHHHHH
Confidence 9999999999999999999999998 69999999999999999999883 6899999999999988999999999999
Q ss_pred HHHh
Q psy1918 238 LSLI 241 (251)
Q Consensus 238 l~~~ 241 (251)
++++
T Consensus 238 ~~~~ 241 (241)
T 1iru_E 238 IKDI 241 (241)
T ss_dssp HTTC
T ss_pred HHhC
Confidence 8653
No 8
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=1.1e-62 Score=423.12 Aligned_cols=237 Identities=30% Similarity=0.515 Sum_probs=224.7
Q ss_pred ccc-ccCCCCceeecCCCcchhhchHHHHHhc-CCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeC
Q psy1918 6 KFR-NQYDSDVTVWSPQGRLHQVEYAMEAVKQ-GSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAG 81 (251)
Q Consensus 6 ~~~-~~yd~~~t~fsp~G~l~QvEya~~a~~~-G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG 81 (251)
|++ ++||+++|+|||||||+|||||++|+++ |+|+|||+++||||||+|++.+.++. ++.+||++|++|++|+++|
T Consensus 3 m~~~~~yd~~~t~fsp~Grl~QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG 82 (246)
T 1iru_A 3 RGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTG 82 (246)
T ss_dssp CSCCCTTTTTSSCCCTTSCCHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCCCSSBCGGGCCSEEESSSSCEEEEEE
T ss_pred CCccCCcCCCCccCCCCCeehHHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCCCcccCCCccCceEEECCCEEEEEec
Confidence 554 7999999999999999999999999999 99999999999999999999997664 5789999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeee
Q psy1918 82 LTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYD 160 (251)
Q Consensus 82 ~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~ 160 (251)
+.+|++.+.++++.+++.|++.++++++++.+++++++.+|.|+++.+.|||++++||||||+ +||+||.+||+|++.+
T Consensus 83 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~ 162 (246)
T 1iru_A 83 MTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCG 162 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEE
Confidence 999999999999999999999999999999999999999999999988999999999999996 7899999999999999
Q ss_pred eeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCc-eEEecHHHHHHHHH
Q psy1918 161 VKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQK-FKTLDERETGHYLS 239 (251)
Q Consensus 161 ~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~-~~~l~~~ei~~~l~ 239 (251)
++++|+|+|++.++++|++.|++.++|+++||++++++||+.+++|| .++.+++|++|+++|. |++++++||++++.
T Consensus 163 ~~~~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd--~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~ 240 (246)
T 1iru_A 163 FKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSID--FKPSEIEVGVVTVENPKFRILTEAEIDAHLV 240 (246)
T ss_dssp BSEEEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCC--CCTTSEEEEEEETTEEEEEECCHHHHHHHHH
T ss_pred eeEEEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhccc--CCCCcEEEEEEECCCCeEEECCHHHHHHHHH
Confidence 99999999999999999999983339999999999999999999998 5799999999999875 89999999999999
Q ss_pred Hhhhh
Q psy1918 240 LIEGE 244 (251)
Q Consensus 240 ~~~~~ 244 (251)
.++++
T Consensus 241 ~~~~~ 245 (246)
T 1iru_A 241 ALAER 245 (246)
T ss_dssp HHHTC
T ss_pred Hhhcc
Confidence 99654
No 9
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=8.2e-64 Score=433.93 Aligned_cols=237 Identities=31% Similarity=0.478 Sum_probs=217.1
Q ss_pred ccccccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCc
Q psy1918 5 WKFRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGL 82 (251)
Q Consensus 5 ~~~~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~ 82 (251)
+|+.++||+++|+|||+|||||||||++|+++|+|+|||+++||||||+|++.++++. ++.+||++|++|++|+++|+
T Consensus 6 ~~~~~~yd~~~t~fSp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~li~~~~~~KI~~i~d~i~~~~aG~ 85 (264)
T 3h4p_A 6 MVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGL 85 (264)
T ss_dssp ----------CCCCCSSSSCHHHHHHHHHHHHSCCEEEECCSSEEEEEEECCCCSTTBCTTTCCCEEEEETTEEEEEEEC
T ss_pred CCCccccCCCcceECCCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEecCccCCccccCccccEEEecCcEEEEeccc
Confidence 3568999999999999999999999999999999999999999999999999999874 57899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeee
Q psy1918 83 TADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVK 162 (251)
Q Consensus 83 ~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~ 162 (251)
.+|++.++++++.+++.|++.++++++++.+|++|++.+|.|+++.++|||++++||||||++||+||.+||+|++.+++
T Consensus 86 ~aD~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~~gp~Ly~iDp~G~~~~~~ 165 (264)
T 3h4p_A 86 VADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYK 165 (264)
T ss_dssp SHHHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETTEEEEEEECTTCCCEEES
T ss_pred hHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeCCcCEEEEECCCceEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred EEEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC-ceEEecHHHHHHHHHHh
Q psy1918 163 AMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ-KFKTLDERETGHYLSLI 241 (251)
Q Consensus 163 ~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~-~~~~l~~~ei~~~l~~~ 241 (251)
++|+|+|+..++++|++.|+ ++|+++||++++++||..++++ .++++++|++|++++ +|++|+++||++++..+
T Consensus 166 ~~aiGsgs~~a~~~Le~~~~--~~ms~eea~~la~~al~~a~~~---~sg~~iev~vi~~~~~~~~~l~~~ei~~~~~~~ 240 (264)
T 3h4p_A 166 ATAIGSGRPVVMELLEKEYR--DDITLDEGLELAITALTKANED---IKPENVDVCIITVKDAQFKKIPVEEIKKLIEKV 240 (264)
T ss_dssp EEEESTTHHHHTTTHHHHCC--TTCCSHHHHHHHHHHHHHHSSS---CCTTSEEEEEEETTTTEEEECCTTTTGGGTTTT
T ss_pred eEEECCCHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHhc---cCCCeEEEEEEEeCCCcEEECCHHHHHHHHHHH
Confidence 99999999999999999998 6999999999999999999975 588999999999764 69999999999999999
Q ss_pred hhhhh
Q psy1918 242 EGEER 246 (251)
Q Consensus 242 ~~~~~ 246 (251)
.++.+
T Consensus 241 ~~~~~ 245 (264)
T 3h4p_A 241 KKKLN 245 (264)
T ss_dssp TTSSS
T ss_pred HHhhh
Confidence 85433
No 10
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=2.3e-62 Score=424.59 Aligned_cols=234 Identities=31% Similarity=0.505 Sum_probs=223.5
Q ss_pred ccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHH
Q psy1918 9 NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTAD 85 (251)
Q Consensus 9 ~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D 85 (251)
++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++. .+.+||++|++|++|++||+.+|
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD 82 (261)
T 1iru_C 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSD 82 (261)
T ss_dssp TTTCCCTTCCCTTSCCHHHHHHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHH
T ss_pred CccCCCCccCCCCCeehHHHhHHHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHH
Confidence 399999999999999999999999999999999999999999999999999975 25899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEE
Q psy1918 86 ARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAM 164 (251)
Q Consensus 86 ~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~ 164 (251)
++.+.++++.+++.|++.++++++++.+++++++.++.|+++.+.|||++++||||||+ +||+||.+||+|++.+++++
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ 162 (261)
T 1iru_C 83 ANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKAT 162 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeE
Confidence 99999999999999999999999999999999999999999988999999999999995 78999999999999999999
Q ss_pred EEcCChHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCc---eEEecHHHHHHHHHH
Q psy1918 165 AIGSRSQSARTYLEKRLADFP-EASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQK---FKTLDERETGHYLSL 240 (251)
Q Consensus 165 a~G~g~~~a~~~L~~~~~~~~-~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~---~~~l~~~ei~~~l~~ 240 (251)
|+|+|+..++++|++.|+ + +||++||++++++||..++++|. .++.+++|++|+++++ |++|+++||+.++..
T Consensus 163 aiGsgs~~a~~~Le~~~~--~~~ms~eeA~~la~~al~~~~~~d~-~sg~~i~v~vi~~~~~~~~~~~l~~~ei~~~l~~ 239 (261)
T 1iru_C 163 CIGNNSAAAVSMLKQDYK--EGEMTLKSALALAIKVLNKTMDVSK-LSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKK 239 (261)
T ss_dssp EESTTTTHHHHHHHHHCC--TTCCCHHHHHHHHHHHHHHSSSCTT-CCSTTCEEEEEECCSSSCEEEECCHHHHHHHHHH
T ss_pred EeCcccHHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHhccC-CCCCcEEEEEEEcCCCeeeEEECCHHHHHHHHHH
Confidence 999999999999999998 7 99999999999999999999985 7899999999999874 899999999999999
Q ss_pred hhhhh
Q psy1918 241 IEGEE 245 (251)
Q Consensus 241 ~~~~~ 245 (251)
+.+++
T Consensus 240 ~~~~~ 244 (261)
T 1iru_C 240 HEEEE 244 (261)
T ss_dssp HHTTT
T ss_pred HHhch
Confidence 96443
No 11
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=4.5e-62 Score=418.91 Aligned_cols=231 Identities=30% Similarity=0.494 Sum_probs=222.0
Q ss_pred cCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHH
Q psy1918 10 QYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADA 86 (251)
Q Consensus 10 ~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~ 86 (251)
+||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++. ++.+||++|++|++|++||+.+|+
T Consensus 4 ~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 83 (244)
T 1ryp_C 4 RYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADA 83 (244)
T ss_dssp GGCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHH
T ss_pred ccCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHH
Confidence 89999999999999999999999999999999999999999999999999874 478999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEe-CCCCeEEEECCCCCeeeeeEEE
Q psy1918 87 RILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMA 165 (251)
Q Consensus 87 ~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d-~~gp~ly~id~~G~~~~~~~~a 165 (251)
+.+.++++.+++.|++.++++++++.+++++++.+|.|+++.++|||++++|||||| ++||+||.+||.|++.+++++|
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~a 163 (244)
T 1ryp_C 84 EILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAIS 163 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEEE
Confidence 999999999999999999999999999999999999999999999999999999999 7889999999999999999999
Q ss_pred EcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEe--cCCc---eEEecHHHHHHHHHH
Q psy1918 166 IGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVG--QNQK---FKTLDERETGHYLSL 240 (251)
Q Consensus 166 ~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~--~~~~---~~~l~~~ei~~~l~~ 240 (251)
+|+|++.++++|++.|+ ++|+++||++++++||..++++|. .++.+++|++|+ +++. |++|+++||++++..
T Consensus 164 iGsgs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~rd~-~sg~~i~v~vi~~~~~~~~~~~~~l~~~ei~~~~~~ 240 (244)
T 1ryp_C 164 VGANTSAAQTLLQMDYK--DDMKVDDAIELALKTLSKTTDSSA-LTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILVK 240 (244)
T ss_dssp ESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHHCSSSS-CCGGGEEEEEEECCSSSSSCEEEECCHHHHHHHHHH
T ss_pred ECCCcHHHHHHHHHhhh--cCCCHHHHHHHHHHHHHHHhcccc-CCCCcEEEEEEEeecCCCceeEEECCHHHHHHHHHH
Confidence 99999999999999998 699999999999999999999964 578999999999 8876 999999999999988
Q ss_pred hhh
Q psy1918 241 IEG 243 (251)
Q Consensus 241 ~~~ 243 (251)
+..
T Consensus 241 ~~~ 243 (244)
T 1ryp_C 241 TGI 243 (244)
T ss_dssp HTC
T ss_pred hhc
Confidence 764
No 12
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=4.4e-62 Score=418.23 Aligned_cols=233 Identities=37% Similarity=0.567 Sum_probs=221.5
Q ss_pred cCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHH
Q psy1918 10 QYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADA 86 (251)
Q Consensus 10 ~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~ 86 (251)
+||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++. ++.+||++|++|++|+++|+.+|+
T Consensus 1 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 80 (241)
T 1ryp_D 1 GYDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADS 80 (241)
T ss_dssp CCCCCCSCCBTTTBCHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHH
T ss_pred CCCCCceeECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHH
Confidence 69999999999999999999999999999999999999999999999999975 378999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC--CCCeEEEECCCCCeeeeeEE
Q psy1918 87 RILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD--AGPHIYQTCPSSNYYDVKAM 164 (251)
Q Consensus 87 ~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~--~gp~ly~id~~G~~~~~~~~ 164 (251)
+.+.++++.+++.|++.++++++++.+++++++.++.|+++.++|||++++||||||+ +||+||.+||.|++.+++++
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~ 160 (241)
T 1ryp_D 81 RILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQ 160 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeE
Confidence 9999999999999999999999999999999999999999989999999999999998 78999999999999999999
Q ss_pred EEcCChHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhh
Q psy1918 165 AIGSRSQSARTYLEKRLAD-FPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEG 243 (251)
Q Consensus 165 a~G~g~~~a~~~L~~~~~~-~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~ 243 (251)
|+|+|++.++++|++.|++ .++|+++||++++++||+.+++ .++++++|++|+++++|++++++||++++..+++
T Consensus 161 aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~----~sg~~i~v~vi~~~~~~~~l~~~ei~~~~~~~~~ 236 (241)
T 1ryp_D 161 TIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ----TGAKNIEITVVKPDSDIVALSSEEINQYVTQIEQ 236 (241)
T ss_dssp EESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC----SCSTTEEEEEEETTTEEEECCHHHHHHHHHHHTH
T ss_pred EECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc----CCCCcEEEEEEECCCcEEECCHHHHHHHHHHHhh
Confidence 9999999999999999931 2799999999999999999984 4788999999999878999999999999999977
Q ss_pred hhh
Q psy1918 244 EER 246 (251)
Q Consensus 244 ~~~ 246 (251)
+++
T Consensus 237 ~~~ 239 (241)
T 1ryp_D 237 EKQ 239 (241)
T ss_dssp HHH
T ss_pred hhc
Confidence 664
No 13
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=7.2e-62 Score=419.93 Aligned_cols=236 Identities=27% Similarity=0.392 Sum_probs=223.9
Q ss_pred cccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHH
Q psy1918 8 RNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTAD 85 (251)
Q Consensus 8 ~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D 85 (251)
.++||+++|+|||||||||||||++|+++|+|+|||+++||||||+|+|.++++. ++.+||++|++|++|+++|+.+|
T Consensus 4 ~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD 83 (254)
T 1iru_G 4 GTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLAD 83 (254)
T ss_dssp CSSTTSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBCTTTTCCEEEEETTEEEEEEECHHH
T ss_pred ccccCCCCccCCcCCccHHHHhHHHHHhcCCCEEEEEECCEEEEEEecccCCCCcCcCcCCcEEEECCCEEEEEecChHH
Confidence 4689999999999999999999999999999999999999999999999999875 57899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEe-CCCCeEEEECCCCCeeeeeEE
Q psy1918 86 ARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAM 164 (251)
Q Consensus 86 ~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d-~~gp~ly~id~~G~~~~~~~~ 164 (251)
++.+.++++.+++.|++.++++++++.+++++++.+|.|+++++.|||++++|||||| ++||+||.+||+|++.+++++
T Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ 163 (254)
T 1iru_G 84 ARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGC 163 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeeeE
Confidence 9999999999999999999999999999999999999999999999999999999999 778999999999999999999
Q ss_pred EEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecC--CceEEecHHHHHHHHHHhh
Q psy1918 165 AIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQN--QKFKTLDERETGHYLSLIE 242 (251)
Q Consensus 165 a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~--~~~~~l~~~ei~~~l~~~~ 242 (251)
|+|+|++.++++|++.|+ ++|+++||++++++||+.++++|. .++.+++|++|+++ |.|+++++++++.++..++
T Consensus 164 aiGsgs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~~~~-~~~~~iev~vi~~~~~g~~~~l~~~~i~~~~~~~~ 240 (254)
T 1iru_G 164 AIGKARQAAKTEIEKLQM--KEMTCRDIVKEVAKIIYIVHDEVK-DKAFELELSWVGELTNGRHEIVPKDIREEAEKYAK 240 (254)
T ss_dssp EESTTHHHHHHHHTTSCG--GGCCHHHHHHHHHHHHHHHSCSSS-SCCEEEEEEECBTTTTTCCEECCHHHHHHHHHHHH
T ss_pred EecCccHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHhhcc-CCCCcEEEEEEEcCCCCCeEECCHHHHHHHHHHHH
Confidence 999999999999999987 699999999999999999998774 57889999999987 5699999999999999887
Q ss_pred hhhh
Q psy1918 243 GEER 246 (251)
Q Consensus 243 ~~~~ 246 (251)
++.+
T Consensus 241 ~~~~ 244 (254)
T 1iru_G 241 ESLK 244 (254)
T ss_dssp HHHC
T ss_pred Hhhh
Confidence 5544
No 14
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=5.2e-62 Score=419.49 Aligned_cols=232 Identities=37% Similarity=0.592 Sum_probs=221.7
Q ss_pred CCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHHHH
Q psy1918 11 YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARI 88 (251)
Q Consensus 11 yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~ 88 (251)
||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++. ++.+||++|++|++|+++|+.+|++.
T Consensus 3 yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~ 82 (248)
T 1iru_D 3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARI 82 (248)
T ss_dssp CCCCCSCCCTTSCCHHHHHHHHHHHTSCCEEEECCSSEEEEEECCCCCCSSSCGGGGCSEEESSSSCEEEEEECHHHHHH
T ss_pred ccCCCceECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecccccCccCCCCCcEEEEcCCEEEEEeecHHHHHH
Confidence 9999999999999999999999999999999999999999999999999974 46899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEe-CCCCeEEEECCCCCeeeeeEEEEc
Q psy1918 89 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIG 167 (251)
Q Consensus 89 l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d-~~gp~ly~id~~G~~~~~~~~a~G 167 (251)
+.++++.+++.|++.++++++++.+++++++.+|.|+++.+.|||++++|||||| ++||+||.+||.|++.+++++|+|
T Consensus 83 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG 162 (248)
T 1iru_D 83 VINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIG 162 (248)
T ss_dssp HHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEES
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999 788999999999999999999999
Q ss_pred CChHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhhhh
Q psy1918 168 SRSQSARTYLEKRLADFPEA--SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEE 245 (251)
Q Consensus 168 ~g~~~a~~~L~~~~~~~~~~--s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~~~ 245 (251)
+|++.++++|++.|+ ++| +++||++++++||+.+++ .++++++|++|+++|+|++++++||++++..+.+++
T Consensus 163 ~gs~~a~~~Le~~~~--~~m~~s~eea~~la~~al~~~~~----~sg~~i~v~vi~~~g~~~~l~~~ei~~~~~~~~~~~ 236 (248)
T 1iru_D 163 RGAKSVREFLEKNYT--DEAIETDDLTIKLVIKALLEVVQ----SGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEK 236 (248)
T ss_dssp TTHHHHHHHHTTTCC--SSTTCSHHHHHHHHHHHHHTTSC----TTSTTCCEEEEESSSCEECCCHHHHHHHTTTTTTTT
T ss_pred CCcHHHHHHHHHhhc--ccccCCHHHHHHHHHHHHHHHHc----CCCCcEEEEEEECCCcEEECCHHHHHHHHHHHHhcc
Confidence 999999999999998 699 999999999999999985 368899999999998899999999999999998665
Q ss_pred hcc
Q psy1918 246 RRG 248 (251)
Q Consensus 246 ~~~ 248 (251)
+.+
T Consensus 237 ~~~ 239 (248)
T 1iru_D 237 EEN 239 (248)
T ss_dssp TTT
T ss_pred hhh
Confidence 543
No 15
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=2e-61 Score=414.40 Aligned_cols=232 Identities=32% Similarity=0.493 Sum_probs=222.5
Q ss_pred CCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHHHHH
Q psy1918 12 DSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARIL 89 (251)
Q Consensus 12 d~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l 89 (251)
|+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++. ++.+||++|++|++|++||+.+|++.+
T Consensus 1 d~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l 80 (242)
T 1ryp_E 1 DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSM 80 (242)
T ss_dssp CCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSTTBCGGGCCCEEEEETTEEEEEEESGGGHHHH
T ss_pred CCCCceECCCCcChHHHhHHHHHHcCCCEEEEEECCEEEEEEeecCCCcCccCccCCceEEEcCCEEEEEeecHHHHHHH
Confidence 789999999999999999999999999999999999999999999999974 578999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCC------CCcceeeeeEEEEe-CCCCeEEEECCCCCeeeee
Q psy1918 90 ARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYD------KRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVK 162 (251)
Q Consensus 90 ~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~------~rP~~v~~iv~G~d-~~gp~ly~id~~G~~~~~~ 162 (251)
.++++.+++.|++.++++++++.++++++++++.|+++.+ .|||++++|||||| ++||+||.+||.|++.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~ 160 (242)
T 1ryp_E 81 IEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYN 160 (242)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBS
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccC
Confidence 9999999999999999999999999999999999999988 89999999999999 6789999999999999999
Q ss_pred EEEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhh
Q psy1918 163 AMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIE 242 (251)
Q Consensus 163 ~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~ 242 (251)
++|+|+|+..++++|++.|+ ++||++||++++++||..+++|+ .++.+++|++|++++.|++++++||++++..+.
T Consensus 161 ~~aiGsgs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~~~--~sg~~i~v~vi~~~~~~~~~~~~ei~~~~~~~~ 236 (242)
T 1ryp_E 161 AKAIGSGSEGAQAELLNEWH--SSLTLKEAELLVLKILKQVMEEK--LDENNAQLSCITKQDGFKIYDNEKTAELIKELK 236 (242)
T ss_dssp EEEESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHHCSSC--CCTTSEEEEEEETTTEEEECCHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHHhhcc--CCCCcEEEEEEECCCCeEECCHHHHHHHHHHHh
Confidence 99999999999999999999 69999999999999999999883 678999999999998799999999999999998
Q ss_pred hhhhc
Q psy1918 243 GEERR 247 (251)
Q Consensus 243 ~~~~~ 247 (251)
++++.
T Consensus 237 ~~~~~ 241 (242)
T 1ryp_E 237 EKEAA 241 (242)
T ss_dssp HHHTT
T ss_pred hhhcc
Confidence 87764
No 16
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=2.3e-60 Score=408.29 Aligned_cols=231 Identities=29% Similarity=0.411 Sum_probs=217.0
Q ss_pred ccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHH
Q psy1918 9 NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADA 86 (251)
Q Consensus 9 ~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~ 86 (251)
++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++. +..+||++|++|++|++||+.+|+
T Consensus 2 ~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD~ 81 (244)
T 1ryp_G 2 TGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDG 81 (244)
T ss_dssp CCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTTSCCCEEETTTEEEEEEECHHHH
T ss_pred CCccCCcccCCcCCchHHHHhHHHHHHCCCCEEEEEECCEEEEEEecccCCCCccccccCceEEecCCEEEEEcccHHHH
Confidence 689999999999999999999999999999999999999999999999999875 446999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEE
Q psy1918 87 RILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAI 166 (251)
Q Consensus 87 ~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~ 166 (251)
+.+.++++.+++.|++.++++++++.+++++++.+|.|+++.+.|||++++||||||++||+||.+||+|++.+++++|+
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~ai 161 (244)
T 1ryp_G 82 RHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAAT 161 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCCcCEEEEECCCCCEEEeeEEEE
Confidence 99999999999999999999999999999999999999999889999999999999998999999999999999999999
Q ss_pred cCChHHHHHHHHHh---hcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEec---CCceEEecHHHHHHHHHH
Q psy1918 167 GSRSQSARTYLEKR---LADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQ---NQKFKTLDERETGHYLSL 240 (251)
Q Consensus 167 G~g~~~a~~~L~~~---~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~---~~~~~~l~~~ei~~~l~~ 240 (251)
|+|++.++++||+. |+ ++||++||++++++||+.++++|. .++.+++|++|++ +| ++++.++++.+...+
T Consensus 162 G~gs~~a~~~Le~~~~~~~--~~ms~eea~~la~~al~~~~~~d~-~s~~~iev~vi~~~~~~g-~~~~~~~~~~~~~~~ 237 (244)
T 1ryp_G 162 GKGRQSAKAELEKLVDHHP--EGLSAREAVKQAAKIIYLAHEDNK-EKDFELEISWCSLSETNG-LHKFVKGDLLQEAID 237 (244)
T ss_dssp STTHHHHHHHHHHHHHHCT--TCCCHHHHHHHHHHHHHHHGGGGT-TSCEEEEEEEEETTTTTT-SEEECCTHHHHHHHH
T ss_pred CCChHHHHHHHHHhHhhcC--CCCCHHHHHHHHHHHHHHHHhccC-CCCCeEEEEEEEecCCCC-eeeeChHHHHHHHHH
Confidence 99999999999997 87 689999999999999999999985 6888999999997 54 888888887666655
Q ss_pred hhh
Q psy1918 241 IEG 243 (251)
Q Consensus 241 ~~~ 243 (251)
..+
T Consensus 238 ~~~ 240 (244)
T 1ryp_G 238 FAQ 240 (244)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 17
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=3.6e-60 Score=408.48 Aligned_cols=229 Identities=33% Similarity=0.561 Sum_probs=216.8
Q ss_pred ccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHH
Q psy1918 9 NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADA 86 (251)
Q Consensus 9 ~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~ 86 (251)
++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.+.++. ++.+||++|+++++|++||..+|+
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 82 (250)
T 1ryp_B 3 DRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPDY 82 (250)
T ss_dssp CCCCSBSSCBCTTSCBHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCSSBCGGGCCSSEEEETTEEEEEEECHHHH
T ss_pred CcccCCceeECCCCccHHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCCccccCcccCceEEECCCEEEEeeeCHHHH
Confidence 389999999999999999999999999999999999999999999999987664 578999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEE
Q psy1918 87 RILARFMRMECLN-YKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAM 164 (251)
Q Consensus 87 ~~l~~~l~~~~~~-~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~ 164 (251)
+.+.++++.+++. |+..++.+++++.+++.++++++.|+++.+.|||++++||||||+ +||+||.+||.|++.+++++
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ 162 (250)
T 1ryp_B 83 RVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKAT 162 (250)
T ss_dssp HHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeecee
Confidence 9999999999999 999999999999999999999999999888899999999999997 68999999999999999999
Q ss_pred EEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecC---------------CceEEe
Q psy1918 165 AIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQN---------------QKFKTL 229 (251)
Q Consensus 165 a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~---------------~~~~~l 229 (251)
|+|+|++.++++|++.|+ ++|+++||++++++||+.+++++ .++++++|++|+++ ++|++|
T Consensus 163 aiGsgs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~~~--~sg~~i~v~vi~~~~~~~~~~~~~~~~~~~~~~~l 238 (250)
T 1ryp_B 163 AIGKGSVAAKTFLEKRWN--DELELEDAIHIALLTLKESVEGE--FNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKL 238 (250)
T ss_dssp EESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHHCCSC--CSTTTEEEEEECSCCGGGTSEESCSSCCCCSEEEC
T ss_pred EecCccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHhccc--cCCCCEEEEEEEccccccccccccccCCCCCeEEC
Confidence 999999999999999998 69999999999999999999875 57899999999986 249999
Q ss_pred cHHHHHHHHHHh
Q psy1918 230 DERETGHYLSLI 241 (251)
Q Consensus 230 ~~~ei~~~l~~~ 241 (251)
+++||+.++..+
T Consensus 239 ~~~ei~~~l~~~ 250 (250)
T 1ryp_B 239 TSQEINDRLEAL 250 (250)
T ss_dssp CHHHHHHHHTTC
T ss_pred CHHHHHHHHHhC
Confidence 999999998653
No 18
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=2.6e-60 Score=415.89 Aligned_cols=228 Identities=29% Similarity=0.420 Sum_probs=213.4
Q ss_pred cccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHH
Q psy1918 8 RNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTAD 85 (251)
Q Consensus 8 ~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D 85 (251)
.++||+++|+|||+|||||||||++|+++|+|+|||+++||||||+|++.++++. +..+|||+|++|++|++||+.+|
T Consensus 5 ~~~yd~~~t~fSP~Grl~QvEYA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~~~~KI~~I~d~i~~~~aG~~aD 84 (288)
T 3nzj_F 5 GTGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPD 84 (288)
T ss_dssp CCCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTTCSCCCEEETTTEEEEEEECHHH
T ss_pred cCCccCCcccCCCCCchHHHHHHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCccccccceEEEEcCCEEEEecCcHHH
Confidence 7899999999999999999999999999999999999999999999999999975 46799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEE
Q psy1918 86 ARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMA 165 (251)
Q Consensus 86 ~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a 165 (251)
++.|+++++.+++.|++.++++++++.+|+++++++|.|+++.+.|||+|++||||||++||+||.+||+|++.+++++|
T Consensus 85 ~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~a 164 (288)
T 3nzj_F 85 GRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAA 164 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCCCEEEEECCCCCEEEcCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCChHHHHHHHHHh---hcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEec--CC-ceEEecHHHHHHHH
Q psy1918 166 IGSRSQSARTYLEKR---LADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQ--NQ-KFKTLDERETGHYL 238 (251)
Q Consensus 166 ~G~g~~~a~~~L~~~---~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~--~~-~~~~l~~~ei~~~l 238 (251)
+|++++.++++|++. |+ ++|+++||++++++||..+++++. .++.+++|++|++ ++ .++.++.+++++..
T Consensus 165 iGsgs~~a~~~Lek~~~~~~--~~ms~eEAv~la~~al~~a~~~~~-~~~~~iev~vIt~~~~~~~~~~vp~~~~~~~~ 240 (288)
T 3nzj_F 165 TGKGRQSAKAELEKLVDHHP--EGLSAREAVKQAAKIIYLAHEDNK-EKDFELEISWCSLSETNGLHKFVKGDLLQEAI 240 (288)
T ss_dssp ESTTHHHHHHHHHHHHHHCT--TCCCHHHHHHHHHHHHHHHGGGGT-TSEEEEEEEEEETTTSTTCCEECCHHHHHHHH
T ss_pred EcCcHHHHHHHHHHhccccC--CCCCHHHHHHHHHHHHHHHHhccc-CCCCeEEEEEEEecCCCceEEECCHHHHHHHH
Confidence 999999999999999 77 799999999999999999999874 6788999999998 33 35556665555544
No 19
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=6.7e-52 Score=358.41 Aligned_cols=221 Identities=15% Similarity=0.213 Sum_probs=196.7
Q ss_pred ceeecCCCcch-hhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccccccCceEEEcCcEEEEEeCcHHHHHHHHHHH
Q psy1918 15 VTVWSPQGRLH-QVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILARFM 93 (251)
Q Consensus 15 ~t~fsp~G~l~-QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l 93 (251)
+..|||||++. |||||++|+++|+|+|||+++||||||+|++ .++.+|||+|++|++|+++|+.+|++.|.+.+
T Consensus 4 p~~~sPe~~~~~qvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r-----s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~ 78 (259)
T 1q5q_A 4 PYYASAEQIMRDRSELARKGIARGRSVVVLTFRDGVLFVAENP-----STALHKVSELYDRLGFAAVGKYNEFENLRRAG 78 (259)
T ss_dssp -----CHHHHHHHHHHHHHHHHTSCCEEEEECSSEEEEEECCS-----CSSSCSEEEEETTEEEEEEECHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHHHhcCCcEEEEEeCCEEEEEEecC-----CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHH
Confidence 34689999995 9999999999999999999999999999998 35789999999999999999999999999999
Q ss_pred HHHHHHHhhhcC-CCCCHHHHHHHHHH-HHHHhhhcCCCCcceeeeeEEEEe----CCCCeEEEECCCCCee-eeeEEEE
Q psy1918 94 RMECLNYKYAHK-DTLPVFRLISIVGN-KMQVCTQRYDKRPYGVGLLVAGYD----DAGPHIYQTCPSSNYY-DVKAMAI 166 (251)
Q Consensus 94 ~~~~~~~~~~~~-~~i~~~~la~~l~~-~~~~yt~~~~~rP~~v~~iv~G~d----~~gp~ly~id~~G~~~-~~~~~a~ 166 (251)
+.+++.|++.++ ++++++.+++++++ +.|.|+. +.|||+|++|||||| ++||+||.+||+|++. .++++|+
T Consensus 79 ~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~ai 156 (259)
T 1q5q_A 79 IVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTE--QPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVM 156 (259)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEE
T ss_pred HHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEE
Confidence 999999999988 49999999999999 6677884 568999999999999 7889999999999999 8899999
Q ss_pred cCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhC-----CCCCCCCCCeEEEEEEecCC---ceEEecHHHHHHHH
Q psy1918 167 GSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTL-----PNDSELTTKNVSIGLVGQNQ---KFKTLDERETGHYL 238 (251)
Q Consensus 167 G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~-----~~d~~~~~~~iei~ii~~~~---~~~~l~~~ei~~~l 238 (251)
|++++.++++|++.|+ ++|+++||++++++||+.++ +||. ++.+++|++|++++ +|++++++||+.++
T Consensus 157 G~gs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~~~~~~rd~--sg~~iev~vi~~~~~~~~~~~l~~~ei~~~~ 232 (259)
T 1q5q_A 157 GGTTEPIATAMRESYR--ADLDLEAAVGIAVNALRQGGAGEGEKRNV--DVASLEVAVLDQSRPRRAFRRIAGTALEQLV 232 (259)
T ss_dssp SSSHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHTTCC--------C--CSSCSEEEEEETTSSSCCEEECCHHHHHTTS
T ss_pred CCChHHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHhhcccccccC--CCCcEEEEEEECCCCcCCeEECCHHHHHHHH
Confidence 9999999999999999 69999999999999999999 8884 78899999999986 79999999999999
Q ss_pred HHhhhhhh
Q psy1918 239 SLIEGEER 246 (251)
Q Consensus 239 ~~~~~~~~ 246 (251)
..+.++++
T Consensus 233 ~~~~~~~~ 240 (259)
T 1q5q_A 233 PAEPAAAS 240 (259)
T ss_dssp CCC-----
T ss_pred HHhhhccc
Confidence 88875543
No 20
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=3.4e-49 Score=338.98 Aligned_cols=213 Identities=20% Similarity=0.256 Sum_probs=190.9
Q ss_pred cCCCcch-hhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccccccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHH
Q psy1918 19 SPQGRLH-QVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILARFMRMEC 97 (251)
Q Consensus 19 sp~G~l~-QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~ 97 (251)
|||.-+- ++|||++|+++|+|+|||+++||||||+|++ .++.+|||+|++|++|+++|+.+|++.|.+.++.++
T Consensus 8 ~p~~~~~~r~EYA~~av~~GtT~vgi~~kdgVVlaadkr-----~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~ 82 (248)
T 3mi0_A 8 SPEQAMRERSELARKGIARAKSVVALAYAGGVLFVAENP-----SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFA 82 (248)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCCEEEEEETTEEEEEEECC-----CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHH
T ss_pred CHHHhcccchHHHHHHHhCCCcEEEEEeCCEEEEEEeCC-----CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHH
Confidence 4554443 6899999999999999999999999999998 347899999999999999999999999999999999
Q ss_pred HHHhhhcC-CCCCHHHHHHHHH-HHHHHhhhcCCCCcceeeeeEEEEeC----CCCeEEEECCCCCeee-eeEEEEcCCh
Q psy1918 98 LNYKYAHK-DTLPVFRLISIVG-NKMQVCTQRYDKRPYGVGLLVAGYDD----AGPHIYQTCPSSNYYD-VKAMAIGSRS 170 (251)
Q Consensus 98 ~~~~~~~~-~~i~~~~la~~l~-~~~~~yt~~~~~rP~~v~~iv~G~d~----~gp~ly~id~~G~~~~-~~~~a~G~g~ 170 (251)
+.|++.++ ++++++.++++++ .+.|.|++ +.|||+|++||||||+ +||+||++||+|++.. ++++|+|+|+
T Consensus 83 ~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs 160 (248)
T 3mi0_A 83 DTRGYAYDRRDVTGRQLANVYAQTLGTIFTE--QAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTT 160 (248)
T ss_dssp HHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCH
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccH
Confidence 99999999 8999999999999 67788998 5799999999999998 7899999999999995 9999999999
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhC-------CCCCCCCCCeEEEEEEecCC---ceEEecHHHHHHHHHH
Q psy1918 171 QSARTYLEKRLADFPEASLEEIVKHGLRALRDTL-------PNDSELTTKNVSIGLVGQNQ---KFKTLDERETGHYLSL 240 (251)
Q Consensus 171 ~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~-------~~d~~~~~~~iei~ii~~~~---~~~~l~~~ei~~~l~~ 240 (251)
+.++++||++|+ ++|+++||++++++||+.++ .++ +++++++|++|+++| .|++|+++||+.+|.+
T Consensus 161 ~~a~~~Le~~y~--~~mt~eeai~la~~aL~~~~~~~~~~~~~~--~~~~~iev~vv~~~g~~~~f~~l~~~ei~~~l~~ 236 (248)
T 3mi0_A 161 EPIANALKESYA--ENASLTDALRIAVAALRAGSADTSGGDQPT--LGVASLEVAVLDANRPRRAFRRITGSALQALLVD 236 (248)
T ss_dssp HHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHC--------------CCTTEEEEEEETTSSSCCEEECCHHHHHHTC--
T ss_pred HHHHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHhhcccCcccc--cCCCcEEEEEEECCCCcccEEECCHHHHHHHHHH
Confidence 999999999999 69999999999999999999 554 678899999999986 3999999999999988
Q ss_pred hh
Q psy1918 241 IE 242 (251)
Q Consensus 241 ~~ 242 (251)
+.
T Consensus 237 ~~ 238 (248)
T 3mi0_A 237 QE 238 (248)
T ss_dssp --
T ss_pred cC
Confidence 75
No 21
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=6.4e-48 Score=325.91 Aligned_cols=205 Identities=24% Similarity=0.385 Sum_probs=188.1
Q ss_pred CCcEEEeeeCCeEEEEEeccCcccc---ccccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHH
Q psy1918 37 GSATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRL 113 (251)
Q Consensus 37 G~tvigi~~~dgVvla~d~~~~~~l---~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~l 113 (251)
|+|+|||+++||||||+|++.+++. .++.+||++|++|++|+++|+.+|++.+.++++.+++.|++.++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 7999999999999999999999874 2688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeee-EEEEcCChHHHHHHHHHhhcCCCCCCHHH
Q psy1918 114 ISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVK-AMAIGSRSQSARTYLEKRLADFPEASLEE 191 (251)
Q Consensus 114 a~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~-~~a~G~g~~~a~~~L~~~~~~~~~~s~~e 191 (251)
++++++.++.| + .|||++++||||||+ +||+||.+||+|++.+++ +.|+|+|++.++++|++.|+ ++|+++|
T Consensus 81 a~~l~~~~~~~--~--~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~--~~ms~ee 154 (219)
T 3h4p_a 81 ATLLSNILHSS--R--MFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYD--RDMSVEE 154 (219)
T ss_dssp HHHHHHHHHHT--T--TTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCC--TTCCHHH
T ss_pred HHHHHHHHHHh--c--CCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcC--CCCCHHH
Confidence 99999999766 2 479999999999998 789999999999999999 99999999999999999999 6999999
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhhhhhccC
Q psy1918 192 IVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEERRGG 249 (251)
Q Consensus 192 a~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~~~~~~~ 249 (251)
|++++++||..++++|. .++++++|++|+++| |++|+++||+++|..++.+++.++
T Consensus 155 a~~la~~al~~~~~rd~-~sg~~i~v~vi~~~g-~~~l~~~ei~~~l~~~~~~~~~~~ 210 (219)
T 3h4p_a 155 GIKLALNALKSAMERDT-FSGNGISLAVITKDG-VKIFEDEEIEKILDSMKAKPKKKT 210 (219)
T ss_dssp HHHHHHHHHHHHHTSCS-SCCSCCCEEEEETTE-EEECCHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHhhcC-CCCCcEEEEEEeCCC-eEEcCHHHHHHHHHHhhccccccc
Confidence 99999999999999996 788999999999985 999999999999999997766543
No 22
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=8.3e-47 Score=318.64 Aligned_cols=203 Identities=23% Similarity=0.401 Sum_probs=185.5
Q ss_pred HHHhcCCcEEEeeeCCeEEEEEeccCccc-cc--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCC
Q psy1918 32 EAVKQGSATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL 108 (251)
Q Consensus 32 ~a~~~G~tvigi~~~dgVvla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i 108 (251)
+++++|+|+|||+++||||||+|++.+++ +. ++.+||++|+++++|++||..+|++.+.++++.+++.|++.+++++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (217)
T 1yar_H 3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNM 82 (217)
T ss_dssp ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 46789999999999999999999999986 43 5889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCC
Q psy1918 109 PVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS 188 (251)
Q Consensus 109 ~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s 188 (251)
+++.+++++++.++.+ + .|||++++|||||| +||+||.+||+|++.+++++|+|+|++.++++||+.|+ ++||
T Consensus 83 ~v~~la~~l~~~~~~~--r--~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~~s 155 (217)
T 1yar_H 83 PIEAVATLLSNMLNQV--K--YMPYMVQLLVGGID-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYS--EKMT 155 (217)
T ss_dssp CHHHHHHHHHHHHHHT--T--TSCCCEEEEEEEES-SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCC--TTCC
T ss_pred CHHHHHHHHHHHHHhc--C--CCCceEEEEEEEEC-CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcc--cCCC
Confidence 9999999999999553 3 58999999999999 89999999999999999999999999999999999998 6999
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhh
Q psy1918 189 LEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIE 242 (251)
Q Consensus 189 ~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~ 242 (251)
++||++++++||+.+++||. .++++++|++|+++.++++++++||+.++..++
T Consensus 156 ~eea~~la~~al~~~~~rd~-~s~~~i~v~vi~~~~g~~~~~~~ei~~~~~~~~ 208 (217)
T 1yar_H 156 VDEGVDLVIRAISAAKQRDS-ASGGMIDVAVITRKDGYVQLPTDQIESRIRKLG 208 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-TCCSCCEEEEEETTTEEEECCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhccC-CCCCcEEEEEEECCCCEEEcCHHHHHHHHHHHH
Confidence 99999999999999999995 688899999999933599999999999998765
No 23
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=1.4e-46 Score=313.74 Aligned_cols=198 Identities=29% Similarity=0.423 Sum_probs=186.7
Q ss_pred CcEEEeeeCCeEEEEEeccCccc-cc--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918 38 SATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 114 (251)
Q Consensus 38 ~tvigi~~~dgVvla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la 114 (251)
+|+|||+++||||||+|++.+++ +. ++.+||++|++|++|++||+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999986 33 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeee-EEEEcCChHHHHHHHHHhhcCCCCCCHHHHH
Q psy1918 115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVK-AMAIGSRSQSARTYLEKRLADFPEASLEEIV 193 (251)
Q Consensus 115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~-~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~ 193 (251)
+++++.++.+ + .|||++++||||||++||+||.+||+|++.+++ ++|+|+|++.++++||+.|+ ++|+++||+
T Consensus 81 ~~l~~~~~~~--r--~rp~~~~~lvaG~D~~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~--~~~s~eea~ 154 (202)
T 1j2q_H 81 TLTSNLLNSY--R--YFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFT--PEIGVDEAV 154 (202)
T ss_dssp HHHHHHHHHT--T--TSCCCEEEEEEEEETTEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCC--TTCCHHHHH
T ss_pred HHHHHHHHhh--C--CCCceEEEEEEEEeCCCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcC--CCcCHHHHH
Confidence 9999999653 3 589999999999999899999999999999999 99999999999999999999 699999999
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhh
Q psy1918 194 KHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEG 243 (251)
Q Consensus 194 ~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~ 243 (251)
+++++||+.++++|. .++++++|++|+++| +++++++|+++++.+++|
T Consensus 155 ~la~~al~~~~~~d~-~s~~~i~v~vi~~~g-~~~l~~~ei~~~~~~~~~ 202 (202)
T 1j2q_H 155 ELAVRAIYSAMKRDS-ASGDGIDVVKITEDE-FYQYSPEEVEQILAKFRK 202 (202)
T ss_dssp HHHHHHHHHHHTTCT-TSCSCEEEEEECSSC-EEECHHHHHHHHGGGTTC
T ss_pred HHHHHHHHHHHhcCC-CCCCcEEEEEEeCCC-eEEeCHHHHHHHHHHhhC
Confidence 999999999999995 688999999999985 999999999999988754
No 24
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=8.3e-47 Score=330.24 Aligned_cols=220 Identities=19% Similarity=0.270 Sum_probs=190.3
Q ss_pred cCCCcchhh------chHHHHHhcCCcEEEeeeCCeEEEEEeccCcccc---ccccCceEEEcCcEEEEEeCcHHHHHHH
Q psy1918 19 SPQGRLHQV------EYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADARIL 89 (251)
Q Consensus 19 sp~G~l~Qv------Eya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l---~~~~~Ki~~i~~~i~~~~sG~~~D~~~l 89 (251)
||+.-+.+. -++..++++|+|+|||+++||||||+|+|.+++. .++.+||++|+++++|+++|..+|++.+
T Consensus 51 ~p~~~~~~~~~~~~~~~~~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l 130 (287)
T 3nzj_K 51 SPQQFLRAHTDDSRNPDCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFW 130 (287)
T ss_dssp -------------------------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHH
T ss_pred CHHHHHHHhcccccccchhhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHH
Confidence 555555443 2678899999999999999999999999999864 2688999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEe-CCCCeEEEECCCCCeeeeeEEEEcC
Q psy1918 90 ARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGS 168 (251)
Q Consensus 90 ~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d-~~gp~ly~id~~G~~~~~~~~a~G~ 168 (251)
.++++.+++.|++.++++++++.+++++++.++.|++ +||++++|||||| ++||+||.+||.|++.++++.|+|+
T Consensus 131 ~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~----~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGs 206 (287)
T 3nzj_K 131 ETWLGSQCRLHELREKERISVAAASKILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGS 206 (287)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT----SCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEEST
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEec
Confidence 9999999999999999999999999999999987765 3999999999999 5789999999999999999999999
Q ss_pred ChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhhhhh
Q psy1918 169 RSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEER 246 (251)
Q Consensus 169 g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~~~~ 246 (251)
|+..++++|++.|+ ++|+++||++++++||..+++||. .++++++|++|+++| |++++++||++++.++++++.
T Consensus 207 gs~~a~~~Le~~y~--~dms~eEAi~la~~aL~~a~~rD~-~sg~~i~V~vItkdg-~~~l~~~ev~~~l~~~~e~~~ 280 (287)
T 3nzj_K 207 GQTFAYGVLDSNYK--WDLSVEDALYLGKRSILAAAHRDA-YSGGSVNLYHVTEDG-WIYHGNHDVGELFWKVKEEEG 280 (287)
T ss_dssp THHHHHHHHHTSCC--TTCCHHHHHHHHHHHHHHHHHHBT-TCCSEEEEEEEETTE-EEEEEEEEHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHHHHhhCc-CCCCceEEEEEeCCC-EEEeCHHHHHHHHHHHHHhhc
Confidence 99999999999999 699999999999999999999996 789999999999996 999999999999999987653
No 25
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=1.8e-46 Score=329.11 Aligned_cols=216 Identities=21% Similarity=0.208 Sum_probs=193.9
Q ss_pred HHHHHhcCCcEEEeeeCCeEEEEEeccCccc-cc--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCC
Q psy1918 30 AMEAVKQGSATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKD 106 (251)
Q Consensus 30 a~~a~~~G~tvigi~~~dgVvla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~ 106 (251)
|.+|+++|+|+|||+++||||||+|++.+++ +. ++.+|||+|+++++|+++|..+|++.+.++++.+++.|++.+++
T Consensus 58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~ 137 (294)
T 1q5r_H 58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGV 137 (294)
T ss_dssp --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCC
Confidence 8889999999999999999999999999985 43 57899999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCC-C-----CeEEEECCCCCeeee--eEEEEcCChHHHHHHHH
Q psy1918 107 TLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-G-----PHIYQTCPSSNYYDV--KAMAIGSRSQSARTYLE 178 (251)
Q Consensus 107 ~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~-g-----p~ly~id~~G~~~~~--~~~a~G~g~~~a~~~L~ 178 (251)
+++++.+++.|+++++.|+++. +|||++++||||||++ | |+||.+||+|++.++ +++|+|+|+++++++|+
T Consensus 138 ~isv~~la~~la~~l~~~~~~~-~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le 216 (294)
T 1q5r_H 138 PLTFDGKANRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALK 216 (294)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH-TTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhh-cCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHH
Confidence 9999999999999999988764 7999999999999975 6 999999999999999 89999999999999999
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCC--eE-----EEEEEecCCceEEecHHHHHHHHHHhhhhhhccCC
Q psy1918 179 KRLADFPEASLEEIVKHGLRALRDTLPNDSELTTK--NV-----SIGLVGQNQKFKTLDERETGHYLSLIEGEERRGGG 250 (251)
Q Consensus 179 ~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~--~i-----ei~ii~~~~~~~~l~~~ei~~~l~~~~~~~~~~~~ 250 (251)
+.|+ ++|+++||++++++||+.++++|. .++. ++ +|++|+++| +++++++|++.+++++.++++..++
T Consensus 217 ~~y~--~~ms~eEAi~la~~aL~~a~~rD~-~sG~~~~ir~i~~ev~vI~~~g-~~~l~~~ei~~~l~~i~~~~~~~~~ 291 (294)
T 1q5r_H 217 KIYS--PDSDEETALRAAIESLYDAADDDS-ATGGPDLTRGIYPTAVTITQAG-AVHVSEETTSELARRIVAERTEQGG 291 (294)
T ss_dssp HHCC--SSCCHHHHHHHHHHHHHHHHHHCT-TTCCCBTTTTBCCEEEEEETTE-EEECCHHHHHHHHHHHCC-------
T ss_pred Hhcc--CCCCHHHHHHHHHHHHHHHHhhcc-ccCCchhhcccCCEEEEEECCC-EEEcCHHHHHHHHHHHHHHhhhCCC
Confidence 9998 699999999999999999999986 4443 25 999999986 9999999999999999888776554
No 26
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=1.7e-46 Score=328.99 Aligned_cols=233 Identities=18% Similarity=0.142 Sum_probs=173.7
Q ss_pred cccCCCCceeecCCCcc-----hh--hchHHHHHhcCCcEEEeeeCCeEEEEEeccCcccc-c--cccCceEEEcCcEEE
Q psy1918 8 RNQYDSDVTVWSPQGRL-----HQ--VEYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL-A--AHQKKIIVIDDHMGL 77 (251)
Q Consensus 8 ~~~yd~~~t~fsp~G~l-----~Q--vEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l-~--~~~~Ki~~i~~~i~~ 77 (251)
-++|+..+...+|+.-. +| +|||++ +++|+|+|||+++||||||+|++.+++. . ++.+|||+|++|++|
T Consensus 22 ~~~f~~~~~~~~~~~l~~~~~~~~~~~~ya~~-v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~ 100 (291)
T 2jay_A 22 LSSFTDFLRRQAPELLPASISGGAPLAGGDAQ-LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTAT 100 (291)
T ss_dssp -------------------------------------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEE
T ss_pred CccHHHHhhhcChhhccccccccCcCcccccc-ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEE
Confidence 47788888888887554 23 699999 9999999999999999999999999883 2 578999999999999
Q ss_pred EEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCC-C-----CeEEE
Q psy1918 78 SFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-G-----PHIYQ 151 (251)
Q Consensus 78 ~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~-g-----p~ly~ 151 (251)
+++|..+|++.+.++++.+++.|++.++++++++.+++.++++++.|++ ..+|||+|++||||||++ + |+||.
T Consensus 101 ~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~-~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~ 179 (291)
T 2jay_A 101 GIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLA-AAMQGLLALPLLAGYDIHASDPQSAGRIVS 179 (291)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHH-HHHHTCCCEEEEEEECTTCSCSTTCEEEEE
T ss_pred EEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhh-hhccccceeEEEEEEeCCCCcCCCCCEEEE
Confidence 9999999999999999999999999999999999999999999988865 357899999999999975 4 89999
Q ss_pred ECCCCCee--eeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCe--E-----EEEEEec
Q psy1918 152 TCPSSNYY--DVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKN--V-----SIGLVGQ 222 (251)
Q Consensus 152 id~~G~~~--~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~--i-----ei~ii~~ 222 (251)
+||+|++. +++++|+|+|++.++++|++.|+ ++|+++||++++++||+.++++|. .+++. + +|++|++
T Consensus 180 iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~--~~ms~eEAi~la~~aL~~a~~~D~-~sg~~e~vr~~~~~v~vi~~ 256 (291)
T 2jay_A 180 FDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYS--QVTDGDSGLRVAVEALYDAADDDS-ATGGPDLVRGIFPTAVIIDA 256 (291)
T ss_dssp ECTTSCEEECSSSEEEESTTHHHHHHHHHHHGG--GCCSHHHHHHHHHHHHHHC-----------------CCEEEEEET
T ss_pred ECCCCcEEecCCCEEEEecCHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHhhCC-CCCCcccccccCCEEEEEEC
Confidence 99999999 88999999999999999999999 699999999999999999999996 44532 1 6999999
Q ss_pred CCceEEecHHHHHHHHHHhhhhhh
Q psy1918 223 NQKFKTLDERETGHYLSLIEGEER 246 (251)
Q Consensus 223 ~~~~~~l~~~ei~~~l~~~~~~~~ 246 (251)
+| +++++++||+.++..+.+++.
T Consensus 257 dg-~~~l~~~ei~~~~~~~~~~~~ 279 (291)
T 2jay_A 257 DG-AVDVPESRIAELARAIIESRS 279 (291)
T ss_dssp TE-EEECCHHHHHHHHHHC-----
T ss_pred CC-eEEcCHHHHHHHHHHHHHhhh
Confidence 85 999999999999999976653
No 27
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=7.1e-46 Score=309.99 Aligned_cols=200 Identities=19% Similarity=0.282 Sum_probs=187.6
Q ss_pred CcEEEeeeCCeEEEEEeccCccc-cc--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918 38 SATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 114 (251)
Q Consensus 38 ~tvigi~~~dgVvla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la 114 (251)
+|+|||+++||||||+|++.+++ +. ++.+||++|++|++|++||+.+|++.+.+.++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999985 43 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHH
Q psy1918 115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK 194 (251)
Q Consensus 115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~ 194 (251)
+++++.++.|++ +||++++||||||++||+||.+||+|++.+++++|+|+|++.++++|++.|+ ++||++||++
T Consensus 81 ~~l~~~~~~~r~----~~~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~--~~~s~eea~~ 154 (204)
T 1iru_L 81 KLLANMVYQYKG----MGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYS--YDLEVEQAYD 154 (204)
T ss_dssp HHHHHHHHTTTT----SCCCBEEEEEEECSSSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCC--TTCCHHHHHH
T ss_pred HHHHHHHHHhCC----CCeeEEEEEEEEeCCCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCC--CCCCHHHHHH
Confidence 999999977653 4899999999999999999999999999999999999999999999999998 6999999999
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhhhh
Q psy1918 195 HGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEE 245 (251)
Q Consensus 195 ~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~~~ 245 (251)
++++||+.+++||. .++++++|++|+++| +++++++|+++++.++++++
T Consensus 155 l~~~al~~~~~rd~-~s~~~i~v~vi~~~g-~~~l~~~ei~~~~~~~~~~~ 203 (204)
T 1iru_L 155 LARRAIYQATYRDA-YSGGAVNLYHVREDG-WIRVSSDNVADLHEKYSGST 203 (204)
T ss_dssp HHHHHHHHHHHHBT-TCCSEEEEEEECSSC-EEEEEEEEHHHHHHHHTC--
T ss_pred HHHHHHHHHHHhCc-cCCCceEEEEEeCCc-eEEeCHHHHHHHHHHhccCC
Confidence 99999999999995 789999999999985 99999999999999997654
No 28
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=1.2e-46 Score=318.08 Aligned_cols=204 Identities=16% Similarity=0.153 Sum_probs=190.1
Q ss_pred HHHHhcCCcEEEeeeCCeEEEEEeccCcccc---ccccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhh-hcCC
Q psy1918 31 MEAVKQGSATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKY-AHKD 106 (251)
Q Consensus 31 ~~a~~~G~tvigi~~~dgVvla~d~~~~~~l---~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~-~~~~ 106 (251)
++|+++|+|+|||+++||||||+|++.+++. .++.+||++|++|++|+++|..+|++.+.++++.+++.|++ .+++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (219)
T 1iru_N 2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (219)
T ss_dssp CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3678999999999999999999999999853 26889999999999999999999999999999999999998 8999
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCC
Q psy1918 107 TLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186 (251)
Q Consensus 107 ~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~ 186 (251)
+++++.+++++++.+ |+++.+.|||++++||||||++||+||.+||.|++.+++++|+|+|++.++++|++.|++.++
T Consensus 82 ~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~ 159 (219)
T 1iru_N 82 SYSPRAIHSWLTRAM--YSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPV 159 (219)
T ss_dssp CCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEEETTEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSC
T ss_pred CCCHHHHHHHHHHHH--HHhcccCCCceEEEEEEEEECCCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCC
Confidence 999999999999998 677777899999999999998899999999999999999999999999999999999983339
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHH
Q psy1918 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238 (251)
Q Consensus 187 ~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l 238 (251)
||++||++++++||..+++||. .++++++|++|+++| +++++++||+..+
T Consensus 160 mt~eea~~l~~~al~~~~~~d~-~sg~~i~v~vi~~~g-~~~~~~~~i~~~~ 209 (219)
T 1iru_N 160 LSQTEARDLVERCMRVLYYRDA-RSYNRFQTATVTEKG-VEIEGPLSTETNW 209 (219)
T ss_dssp CCHHHHHHHHHHHHHHHHHHBT-TCCSCEEEEEEETTE-EEEEEEECCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEEcCCC-EEEcCCeeccchh
Confidence 9999999999999999999995 789999999999986 9999999987664
No 29
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=1.8e-45 Score=313.97 Aligned_cols=208 Identities=22% Similarity=0.220 Sum_probs=191.8
Q ss_pred CcEEEeeeCCeEEEEEeccCccc-cc--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918 38 SATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 114 (251)
Q Consensus 38 ~tvigi~~~dgVvla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la 114 (251)
+|+|||+++||||||+|++.+++ +. ++.+||++|+++++|++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 68999999999999999999985 43 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcceeeeeEEEEeCC-C-----CeEEEECCCCCeeee--eEEEEcCChHHHHHHHHHhhcCCCC
Q psy1918 115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-G-----PHIYQTCPSSNYYDV--KAMAIGSRSQSARTYLEKRLADFPE 186 (251)
Q Consensus 115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~-g-----p~ly~id~~G~~~~~--~~~a~G~g~~~a~~~L~~~~~~~~~ 186 (251)
+.|++.++.|+++. +|||++++||||||++ | |+||.+||+|++.++ +++|+|+|++.++++|++.|+ ++
T Consensus 81 ~~l~~~~~~~~~~~-~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~--~~ 157 (235)
T 1q5q_H 81 NRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYS--PD 157 (235)
T ss_dssp HHHHHHHHTTHHHH-TTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCC--TT
T ss_pred HHHHHHHHHHHHhh-hcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcC--CC
Confidence 99999999888764 7999999999999975 7 999999999999999 999999999999999999998 69
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCCCCC-e-E-----EEEEEecCCceEEecHHHHHHHHHHhhhhhhccCC
Q psy1918 187 ASLEEIVKHGLRALRDTLPNDSELTTK-N-V-----SIGLVGQNQKFKTLDERETGHYLSLIEGEERRGGG 250 (251)
Q Consensus 187 ~s~~ea~~~~~~al~~~~~~d~~~~~~-~-i-----ei~ii~~~~~~~~l~~~ei~~~l~~~~~~~~~~~~ 250 (251)
|+++||++++++||..++++|. .+++ . + +|++|+++| +++++++|++.++..+.++++.+|+
T Consensus 158 ms~eeA~~la~~al~~a~~~d~-~sg~~~~i~~~~~ev~vi~~~g-~~~l~~~ei~~~~~~~~~~~~~~~~ 226 (235)
T 1q5q_H 158 SDEETALRAAIESLYDAADDDS-ATGGPDLTRGIYPTAVTITQAG-AVHVSEETTSELARRIVAERTEQGG 226 (235)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCT-TTCCCBTTTTBCCEEEEEETTE-EEECCHHHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHHHHhhCc-ccCCcccccccccEEEEEeCCC-eEEeCHHHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999986 4443 2 2 999999986 9999999999999999988887775
No 30
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=2.2e-45 Score=308.83 Aligned_cols=202 Identities=18% Similarity=0.272 Sum_probs=190.2
Q ss_pred CcEEEeeeCCeEEEEEeccCccc-cc--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918 38 SATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 114 (251)
Q Consensus 38 ~tvigi~~~dgVvla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la 114 (251)
+|+|||+++||||||+|+|.+++ +. ++.+||++|++|++|++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999985 43 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcceeeeeEEEEe-CCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHH
Q psy1918 115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV 193 (251)
Q Consensus 115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d-~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~ 193 (251)
+++++.++.|+++ ||++++|||||| ++||+||.+||+|++.+++++|+|+|++.++++|++.|+ ++||++||+
T Consensus 81 ~~l~~~~~~~~~~----p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~~s~eea~ 154 (212)
T 1ryp_L 81 KILSNLVYQYKGA----GLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYK--WDLSVEDAL 154 (212)
T ss_dssp HHHHHHHHHTTTS----CCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCC--TTCCHHHHH
T ss_pred HHHHHHHHhhCCC----CceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCC--CCCCHHHHH
Confidence 9999999888763 899999999999 568999999999999999999999999999999999999 699999999
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhhhhhc
Q psy1918 194 KHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEERR 247 (251)
Q Consensus 194 ~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~~~~~ 247 (251)
+++++||+.+++||. .++.+++|++|+++| +++++++|++.++.+++++++.
T Consensus 155 ~la~~al~~~~~rd~-~s~~~i~v~vi~~~g-~~~~~~~ei~~~~~~~~~~~~~ 206 (212)
T 1ryp_L 155 YLGKRSILAAAHRDA-YSGGSVNLYHVTEDG-WIYHGNHDVGELFWKVKEEEGS 206 (212)
T ss_dssp HHHHHHHHHHHHHBT-TCCSEEEEEEEETTE-EEEEEEEEHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcc-ccCCceEEEEEcCCc-eEEECHHHHHHHHHHHHHhhhh
Confidence 999999999999995 789999999999985 9999999999999999876653
No 31
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=3e-46 Score=318.45 Aligned_cols=204 Identities=14% Similarity=0.212 Sum_probs=189.8
Q ss_pred HHHHhcCCcEEEeeeCCeEEEEEeccCcccc-c--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhh-----
Q psy1918 31 MEAVKQGSATVGLKNKTHAVIIALKRAASEL-A--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKY----- 102 (251)
Q Consensus 31 ~~a~~~G~tvigi~~~dgVvla~d~~~~~~l-~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~----- 102 (251)
++|+++|+|+|||+++||||||+|++.+++. . ++.+||++|++|++|++||..+|++.+.++++.+++.|++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (233)
T 1ryp_N 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred cccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence 3578899999999999999999999999863 2 5789999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCC-CCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhh
Q psy1918 103 AHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-GPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRL 181 (251)
Q Consensus 103 ~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~-gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~ 181 (251)
.++++++++.+++++++.+ |+++.+.|||++++||||||++ ||+||.+||.|++.++++.|+|+|++.++++|++.|
T Consensus 82 ~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~ 159 (233)
T 1ryp_N 82 DAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVV 159 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTC
T ss_pred hcCCCCCHHHHHHHHHHHH--HHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhh
Confidence 8999999999999999998 7777778999999999999975 899999999999999999999999999999999999
Q ss_pred cCCC---CCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHH
Q psy1918 182 ADFP---EASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHY 237 (251)
Q Consensus 182 ~~~~---~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~ 237 (251)
++.+ +||++||++++++||+.+++||. .++++++|++|++++++++++++||+.+
T Consensus 160 ~~~~~~~~ms~eea~~la~~al~~~~~rd~-~sg~~i~v~vi~~~~g~~~~~~~~i~~~ 217 (233)
T 1ryp_N 160 DRESDIPKTTVQVAEEAIVNAMRVLYYRDA-RSSRNFSLAIIDKNTGLTFKKNLQVENM 217 (233)
T ss_dssp SSGGGGGGCCHHHHHHHHHHHHHHHHHHBT-TCCSEEEEEEEETTTEEEEEEEEECCSC
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHhcc-cCCCcEEEEEEECCCCeEEcChHhcccc
Confidence 8311 89999999999999999999996 7899999999999844999999999877
No 32
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=8.2e-45 Score=303.78 Aligned_cols=194 Identities=14% Similarity=0.137 Sum_probs=182.9
Q ss_pred CcEEEeeeCCeEEEEEeccCccc-cc--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918 38 SATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 114 (251)
Q Consensus 38 ~tvigi~~~dgVvla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la 114 (251)
+|+|||+++||||||+|+|.+++ +. ++.+||++|++|++|++||+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999998 43 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHH
Q psy1918 115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV 193 (251)
Q Consensus 115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~ 193 (251)
+++++.++.|++ ||++++||||||+ +||+||.+||.|++.+++++++|+|++.++++||+.|+ ++|+++||+
T Consensus 81 ~~l~~~~~~~~~-----p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~--~~~s~eea~ 153 (205)
T 1iru_H 81 SLFKEMCYRYRE-----DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYR--EGMTKEECL 153 (205)
T ss_dssp HHHHHHHHHTTT-----TCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCC--TTCCHHHHH
T ss_pred HHHHHHHHhcCc-----CccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcC--CCCCHHHHH
Confidence 999999987764 9999999999997 78999999999999999999999999999999999998 699999999
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEEEEecCCc-eEEecHHHHHHHHH
Q psy1918 194 KHGLRALRDTLPNDSELTTKNVSIGLVGQNQK-FKTLDERETGHYLS 239 (251)
Q Consensus 194 ~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~-~~~l~~~ei~~~l~ 239 (251)
+++++||+.++++|. .++.+++|++|+++|. +++++++||++++.
T Consensus 154 ~l~~~al~~~~~~d~-~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~~ 199 (205)
T 1iru_H 154 QFTANALALAMERDG-SSGGVIRLAAIAESGVERQVLLGDQIPKFAV 199 (205)
T ss_dssp HHHHHHHHHHHHHBT-TCCSCEEEEEEETTEEEEEEECGGGSCCCCC
T ss_pred HHHHHHHHHHHHhcc-ccCCcEEEEEEeCCCeEEEEeChHHhhHHHh
Confidence 999999999999995 7899999999999974 78999999987764
No 33
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=6.9e-44 Score=308.10 Aligned_cols=196 Identities=20% Similarity=0.203 Sum_probs=175.6
Q ss_pred HHHHHhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCC
Q psy1918 30 AMEAVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKD 106 (251)
Q Consensus 30 a~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~ 106 (251)
+.+|+++|+|+|||+++||||||+|++.+++.. ++.+||++|++|++|++||..+|++.+.+.++.+++.|++.+++
T Consensus 22 ~~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~ 101 (261)
T 3nzj_H 22 QPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSR 101 (261)
T ss_dssp --------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCC
Confidence 367899999999999999999999999998742 58899999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCC
Q psy1918 107 TLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186 (251)
Q Consensus 107 ~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~ 186 (251)
+++++.+++++++.++.| .+||++++||||||++||+||.+||+|++.++++.|+|+|++.++++||+.|+ ++
T Consensus 102 ~~~v~~~a~~l~~~l~~~-----~~~~gv~llvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~ 174 (261)
T 3nzj_H 102 EPRVVSALQMLKQHLFKY-----QGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWK--QD 174 (261)
T ss_dssp CCCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCC--SS
T ss_pred CCCHHHHHHHHHHHHHHh-----cCcccEEEEEEEEeCCCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhc--cC
Confidence 999999999999988443 36999999999999999999999999999999999999999999999999998 69
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHH
Q psy1918 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERE 233 (251)
Q Consensus 187 ~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~e 233 (251)
|++|||++++++||..++.+|. .++++++|++|+++|.++++.+..
T Consensus 175 ms~eEA~~la~~al~~a~~rD~-~sg~~iev~vI~kdg~~~~~~~~~ 220 (261)
T 3nzj_H 175 LTKEEAIKLASDAIQAGIWNDL-GSGSNVDVCVMEIGKDAEYLRNYL 220 (261)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCT-TCCSCEEEEEEETTSCEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhhCC-CCCCcEEEEEEECCCcEEEecccc
Confidence 9999999999999999999996 789999999999998677665533
No 34
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=1.5e-45 Score=319.87 Aligned_cols=208 Identities=14% Similarity=0.206 Sum_probs=191.4
Q ss_pred hchHHHHHhcCCcEEEeeeCCeEEEEEeccCcccc-c--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhh-
Q psy1918 27 VEYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL-A--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKY- 102 (251)
Q Consensus 27 vEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l-~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~- 102 (251)
.+.+++++++|+|+|||+++||||||+|++.+++. . ++.+||++|+++++|+++|..+|++.|.++++.+++.|++
T Consensus 31 ~~~~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~ 110 (266)
T 1g0u_M 31 MVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYD 110 (266)
T ss_dssp ---CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhc
Confidence 46778899999999999999999999999999863 2 5789999999999999999999999999999999999998
Q ss_pred ----hcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCC-CCeEEEECCCCCeeeeeEEEEcCChHHHHHHH
Q psy1918 103 ----AHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-GPHIYQTCPSSNYYDVKAMAIGSRSQSARTYL 177 (251)
Q Consensus 103 ----~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~-gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L 177 (251)
.++++++++.+++++++.+ |+++.+.|||++++||||||++ ||+||.+||.|++.++++.|+|+|+..++++|
T Consensus 111 ~~~~~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~L 188 (266)
T 1g0u_M 111 NPLADAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLL 188 (266)
T ss_dssp CTTTTTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHH
T ss_pred cchhhcCCCCCHHHHHHHHHHHH--HHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHH
Confidence 8999999999999999998 7777778999999999999975 89999999999999999999999999999999
Q ss_pred HHhhcCCC---CCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHH
Q psy1918 178 EKRLADFP---EASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHY 237 (251)
Q Consensus 178 ~~~~~~~~---~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~ 237 (251)
|+.|++.+ +||++||++++++||+.+++||. .++.+++|++|++++++++++++||+.+
T Consensus 189 e~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~-~sg~~i~v~vI~k~~g~~~~~~~ei~~~ 250 (266)
T 1g0u_M 189 RKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDA-RSSRNFSLAIIDKNTGLTFKKNLQVENM 250 (266)
T ss_dssp TTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBT-TCCSEEEEEEEETTTEEEEEEEEECCCC
T ss_pred HHhhcccccCCCCCHHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEECCCCeEEcCHHHhhhh
Confidence 99998311 89999999999999999999996 7899999999999834999999998877
No 35
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=1.2e-43 Score=298.33 Aligned_cols=189 Identities=17% Similarity=0.256 Sum_probs=175.5
Q ss_pred HhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCH
Q psy1918 34 VKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPV 110 (251)
Q Consensus 34 ~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~ 110 (251)
+++|+|+|||+++||||||+|++.++++. ++.+||++|+++++|++||+.+|++.+.++++.+++.|++.+++++++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 85 (213)
T 1iru_M 6 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTT 85 (213)
T ss_dssp CCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred cCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence 57899999999999999999999999873 578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCC-CeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcC------
Q psy1918 111 FRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAG-PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLAD------ 183 (251)
Q Consensus 111 ~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~g-p~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~------ 183 (251)
+.+++++++.+ |+++ .|||++++||||||++| |+||.+||.|++.+++++|+|+|++.++++||+.|++
T Consensus 86 ~~la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~ 161 (213)
T 1iru_M 86 GAIAAMLSTIL--YSRR--FFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNV 161 (213)
T ss_dssp HHHHHHHHHHH--HHTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSC
T ss_pred HHHHHHHHHHH--HhhC--CCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhcccccccccc
Confidence 99999999999 7876 58999999999999755 9999999999999999999999999999999999432
Q ss_pred C-CCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEE
Q psy1918 184 F-PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKT 228 (251)
Q Consensus 184 ~-~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~ 228 (251)
+ ++||++||++++++||..++++|. .++.+++|++|+++| +++
T Consensus 162 ~~~~~s~eea~~l~~~al~~~~~~d~-~s~~~i~v~vi~~~g-~~~ 205 (213)
T 1iru_M 162 EHVPLSLDRAMRLVKDVFISAAERDV-YTGDALRICIVTKEG-IRE 205 (213)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHBT-TSCSEEEEEEEETTE-EEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCC-ccCCcEEEEEEcCCC-eEE
Confidence 1 699999999999999999999995 789999999999986 443
No 36
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=4.2e-44 Score=305.17 Aligned_cols=190 Identities=22% Similarity=0.251 Sum_probs=179.6
Q ss_pred CcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918 38 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 114 (251)
Q Consensus 38 ~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la 114 (251)
+|+|||+++||||||+|+|.++++. ++.+|||+|++|++|++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 6899999999999999999999873 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHH
Q psy1918 115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK 194 (251)
Q Consensus 115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~ 194 (251)
+++++.++.| .+||++++||||||++||+||.+||+|++.++++.|+|+|++.++++||+.|+ ++|+++||++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~ms~eeA~~ 153 (234)
T 3unf_H 81 RILRQTLFRY-----QGHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQ--PNMTLEAAQE 153 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCC--SSCCHHHHHH
T ss_pred HHHHHHHHhc-----CCCccEEEEEEEEeCCCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccC--CCCCHHHHHH
Confidence 9999998654 25999999999999999999999999999999999999999999999999998 6999999999
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHH
Q psy1918 195 HGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGH 236 (251)
Q Consensus 195 ~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~ 236 (251)
++++||+.++.+|. .++++++|++|+++| ++++++.++++
T Consensus 154 la~~al~~~~~~D~-~sg~~iev~vi~~dg-~~~l~~~~i~~ 193 (234)
T 3unf_H 154 LLVEAITAGILSDL-GSGGNVDACVITAGG-AKLQRALSTPT 193 (234)
T ss_dssp HHHHHHHHHHHHBT-TCCSCEEEEEEESSC-EEEEEEEECCC
T ss_pred HHHHHHHHHHhhcC-CCCCcEEEEEEECCC-EEEeCceeccc
Confidence 99999999999996 789999999999995 99999988764
No 37
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=1.4e-43 Score=294.67 Aligned_cols=188 Identities=19% Similarity=0.302 Sum_probs=176.5
Q ss_pred CcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918 38 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 114 (251)
Q Consensus 38 ~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la 114 (251)
+|+|||+++||||||+|++.++++. ++.+||++|++|++|++||+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 6899999999999999999998863 4789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcceeeeeEEEEeC--CCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHH
Q psy1918 115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDD--AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEI 192 (251)
Q Consensus 115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~--~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea 192 (251)
+++++.++.|++. ++||++++||||||+ +||+||.+||+|++.+++++|+|+|++.++++|++.|+ ++||++||
T Consensus 82 ~~l~~~l~~~~~~--r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~--~~~s~eea 157 (198)
T 1ryp_K 82 SFVRQELAKSIRS--RRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYR--PDMTTEEG 157 (198)
T ss_dssp HHHHHHHHHHTTS--SSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCC--TTCCHHHH
T ss_pred HHHHHHHHHhccc--CCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcC--CCCCHHHH
Confidence 9999999887743 249999999999995 78999999999999999999999999999999999998 69999999
Q ss_pred HHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecH
Q psy1918 193 VKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDE 231 (251)
Q Consensus 193 ~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~ 231 (251)
++++++||..+.++|. .++++++|++|+++| ++++++
T Consensus 158 ~~l~~~al~~~~~~d~-~s~~~i~v~vi~~~g-~~~~~~ 194 (198)
T 1ryp_K 158 LDLLKLCVQELEKRMP-MDFKGVIVKIVDKDG-IRQVDD 194 (198)
T ss_dssp HHHHHHHHHHHHHHCS-BCCCCEEEEEEETTE-EEEECC
T ss_pred HHHHHHHHHHHHHhCc-cCCCceEEEEEcCCC-EEEecc
Confidence 9999999999999995 789999999999985 888875
No 38
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=1.3e-43 Score=296.55 Aligned_cols=186 Identities=17% Similarity=0.175 Sum_probs=175.8
Q ss_pred HHHHhcCCcEEEeeeCCeEEEEEeccCccc-cc--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy1918 31 MEAVKQGSATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDT 107 (251)
Q Consensus 31 ~~a~~~G~tvigi~~~dgVvla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~ 107 (251)
.+++++|+|+|||+++||||||+|+|.+++ +. ++.+||++|++|++|++||..+|++.+.++++.+++.|++.+++
T Consensus 3 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~- 81 (205)
T 1ryp_H 3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT- 81 (205)
T ss_dssp TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 578999999999999999999999999998 43 57899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCC
Q psy1918 108 LPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186 (251)
Q Consensus 108 i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~ 186 (251)
++++.+++++++.++.|+++ |++++||||||+ +||+||.+||.|++.+++++|+|+|++.++++||+.|+ ++
T Consensus 82 ~~v~~la~~l~~~~~~~~~~-----~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~ 154 (205)
T 1ryp_H 82 PSTETAASVFKELCYENKDN-----LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFR--EN 154 (205)
T ss_dssp CCHHHHHHHHHHHHHHTTTT-----CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCC--TT
T ss_pred CCHHHHHHHHHHHHHhhhcC-----ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccC--CC
Confidence 99999999999999888652 899999999997 78999999999999999999999999999999999998 69
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCc
Q psy1918 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQK 225 (251)
Q Consensus 187 ~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~ 225 (251)
||++||++++++||+.+++||. .++++++|++|+++|.
T Consensus 155 ~s~eea~~l~~~al~~a~~~d~-~sg~~i~v~vi~~~g~ 192 (205)
T 1ryp_H 155 MSKEETVDFIKHSLSQAIKWDG-SSGGVIRMVVLTAAGV 192 (205)
T ss_dssp CCHHHHHHHHHHHHHHHHHHBT-TCCSCEEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHHHHhCC-ccCCeEEEEEEcCCCE
Confidence 9999999999999999999995 7899999999999873
No 39
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=8.3e-43 Score=295.14 Aligned_cols=187 Identities=19% Similarity=0.296 Sum_probs=174.9
Q ss_pred HhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcC-CCCC
Q psy1918 34 VKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHK-DTLP 109 (251)
Q Consensus 34 ~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~-~~i~ 109 (251)
+++|+|+|||+++||||||+|++.++++. ++.+||++|+++++|++||..+|++.+.++++.+++.|++.++ ++++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 85 (222)
T 1ryp_M 6 GDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLS 85 (222)
T ss_dssp CCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred ccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 57899999999999999999999999863 5789999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCC-CeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHh--------
Q psy1918 110 VFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAG-PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKR-------- 180 (251)
Q Consensus 110 ~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~g-p~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~-------- 180 (251)
++.+|+++++.+ |+++ .+||++++||||||++| |+||.+||.|++.+++++|+|+|+..++++|++.
T Consensus 86 v~~la~~l~~~l--y~~r--~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~ 161 (222)
T 1ryp_M 86 INSAARNIQHLL--YGKR--FFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYE 161 (222)
T ss_dssp HHHHHHHHHHHH--HTTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBC
T ss_pred HHHHHHHHHHHH--HhcC--CCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhcccccccccc
Confidence 999999999998 7765 47999999999999755 9999999999999999999999999999999998
Q ss_pred ---------hcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEE
Q psy1918 181 ---------LADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKT 228 (251)
Q Consensus 181 ---------~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~ 228 (251)
|+ ++|+++||++++++||..+++||. .++++++|++|+++| ++.
T Consensus 162 ~~~~~~~~~~~--~~~s~eeA~~la~~al~~a~~rd~-~sg~~i~v~vi~~~g-~~~ 214 (222)
T 1ryp_M 162 PGTNGKVKKPL--KYLSVEEVIKLVRDSFTSATERHI-QVGDGLEILIVTKDG-VRK 214 (222)
T ss_dssp TTSTTCSBCCC--CCCCHHHHHHHHHHHHHHHHHHBT-TCCSEEEEEEEETTE-EEE
T ss_pred cccccccccCC--CCCCHHHHHHHHHHHHHHHHHhcc-cCCCcEEEEEEcCCC-eEE
Confidence 55 699999999999999999999996 789999999999986 443
No 40
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=1.6e-42 Score=289.89 Aligned_cols=184 Identities=18% Similarity=0.296 Sum_probs=173.0
Q ss_pred HhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCH
Q psy1918 34 VKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPV 110 (251)
Q Consensus 34 ~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~ 110 (251)
+.+|+|+|||+++||||||+|++.++++. ++.+||++|++|++|++||..+|++.+.++++.+++.|++.+++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 84 (205)
T 1iru_J 5 SYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKP 84 (205)
T ss_dssp TSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred cCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Confidence 36899999999999999999999999874 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC--CCCeEEEECCCCCeeee-eEEEEcCChHHHHHHHHHhhcCCCCC
Q psy1918 111 FRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD--AGPHIYQTCPSSNYYDV-KAMAIGSRSQSARTYLEKRLADFPEA 187 (251)
Q Consensus 111 ~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~--~gp~ly~id~~G~~~~~-~~~a~G~g~~~a~~~L~~~~~~~~~~ 187 (251)
+.+++++++.+ |+++. .||++++||||||+ +||+||.+||.|++..+ .++|+|+|++.++++||+.|+ ++|
T Consensus 85 ~~la~~l~~~~--y~~r~--~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~--~~~ 158 (205)
T 1iru_J 85 YTLMSMVANLL--YEKRF--GPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWE--PNM 158 (205)
T ss_dssp HHHHHHHHHHH--HTTTT--SCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCC--SSC
T ss_pred HHHHHHHHHHH--HHhcC--CCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccC--CCC
Confidence 99999999999 88874 49999999999994 78999999999999655 679999999999999999998 699
Q ss_pred CHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC
Q psy1918 188 SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ 224 (251)
Q Consensus 188 s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~ 224 (251)
|++||++++++||+.++++|. .++.+++|++|+++|
T Consensus 159 s~eea~~l~~~al~~~~~~d~-~s~~~i~v~vi~~~g 194 (205)
T 1iru_J 159 DPDHLFETISQAMLNAVDRDA-VSGMGVIVHIIEKDK 194 (205)
T ss_dssp CHHHHHHHHHHHHHHHGGGBT-TSCSCEEEEEEESSB
T ss_pred CHHHHHHHHHHHHHHHHHhCc-ccCCceEEEEEcCCC
Confidence 999999999999999999995 789999999999987
No 41
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=1.3e-42 Score=293.95 Aligned_cols=188 Identities=20% Similarity=0.198 Sum_probs=175.7
Q ss_pred CcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918 38 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 114 (251)
Q Consensus 38 ~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la 114 (251)
+|+|||+++||||||+|+|.++++. ++.+||++|++|++|++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 6899999999999999999999863 4789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHH
Q psy1918 115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK 194 (251)
Q Consensus 115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~ 194 (251)
+++++.++.| .|||++++||||||++||+||.+||+|++.+++++|+|+|++.++++||+.|+ ++|+++||++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~ms~eeA~~ 153 (222)
T 1ryp_I 81 QMLKQHLFKY-----QGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWK--QDLTKEEAIK 153 (222)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCC--SSCCHHHHHH
T ss_pred HHHHHHHhhc-----CCCCCeeEEEEEEeCCCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCC--CCcCHHHHHH
Confidence 9999998554 37999999999999999999999999999999999999999999999999998 6999999999
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHH
Q psy1918 195 HGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERE 233 (251)
Q Consensus 195 ~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~e 233 (251)
++++||+.++++|. .++++++|++|+++++++++.+.+
T Consensus 154 la~~al~~~~~~d~-~sg~~i~v~vi~~~g~~~~~~~~~ 191 (222)
T 1ryp_I 154 LASDAIQAGIWNDL-GSGSNVDVCVMEIGKDAEYLRNYL 191 (222)
T ss_dssp HHHHHHHHHHHHCT-TCCSCEEEEEEETTSCEEEEEEEE
T ss_pred HHHHHHHHHHhccc-cCCCcEEEEEEECCCCEEEEecee
Confidence 99999999999995 689999999999986588775544
No 42
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=3.1e-42 Score=287.93 Aligned_cols=183 Identities=20% Similarity=0.270 Sum_probs=172.4
Q ss_pred HhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCH
Q psy1918 34 VKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPV 110 (251)
Q Consensus 34 ~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~ 110 (251)
+.+|+|+|||+++||||||+|++.++++. ++.+||++|+ |++|+++|..+|++.+.++++.+++.|++.+++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 83 (204)
T 1ryp_J 5 SINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEP 83 (204)
T ss_dssp GSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred CCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCH
Confidence 56899999999999999999999999874 4789999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC--CCCeEEEECCCCCeeee-eEEEEcCChHHHHHHHHHhhcCCCCC
Q psy1918 111 FRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD--AGPHIYQTCPSSNYYDV-KAMAIGSRSQSARTYLEKRLADFPEA 187 (251)
Q Consensus 111 ~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~--~gp~ly~id~~G~~~~~-~~~a~G~g~~~a~~~L~~~~~~~~~~ 187 (251)
+.+++++++.+ |+++.+ ||++++||||||+ +||+||.+||.|++..+ .++|+|+|++.++++||+.|+ ++|
T Consensus 84 ~~la~~l~~~~--y~~~~~--P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~--~~~ 157 (204)
T 1ryp_J 84 ETFTQLVSSSL--YERRFG--PYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYE--PNL 157 (204)
T ss_dssp HHHHHHHHHHH--HTTTTS--CCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCC--SSC
T ss_pred HHHHHHHHHHH--HHhcCC--CceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcC--CCc
Confidence 99999999999 888754 9999999999995 78999999999999655 679999999999999999998 699
Q ss_pred CHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC
Q psy1918 188 SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ 224 (251)
Q Consensus 188 s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~ 224 (251)
+++||++++++||..++++|. .++.+++|++|+++|
T Consensus 158 s~eea~~l~~~al~~~~~~d~-~s~~~i~v~vi~~~g 193 (204)
T 1ryp_J 158 EPEDLFETISQALLNAADRDA-LSGWGAVVYIIKKDE 193 (204)
T ss_dssp CHHHHHHHHHHHHHHHHTTBT-TSCSCEEEEEEESSC
T ss_pred CHHHHHHHHHHHHHHHHHhCc-ccCCcEEEEEEcCCC
Confidence 999999999999999999995 789999999999987
No 43
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=5.9e-43 Score=291.14 Aligned_cols=191 Identities=15% Similarity=0.151 Sum_probs=176.3
Q ss_pred CcEEEeeeCCeEEEEEeccCccc-cc--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918 38 SATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 114 (251)
Q Consensus 38 ~tvigi~~~dgVvla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la 114 (251)
||+|||+++||||||+|++.+++ +. ++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999988 42 6889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeee-eEEEEcCChHHHHHHHHHhhcCCCCCCHHHH
Q psy1918 115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDV-KAMAIGSRSQSARTYLEKRLADFPEASLEEI 192 (251)
Q Consensus 115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~-~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea 192 (251)
+++++.++.| +|||++++||||||+ +||+||. |+|++..+ .++++|+|++.++++||+.|+ ++|+++||
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~--~~ms~eea 151 (199)
T 3unf_N 81 NVVKNISYKY-----REDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYK--PGMTPEEC 151 (199)
T ss_dssp HHHHHHHHHT-----TTTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCC--SSCCHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcC--CCCCHHHH
Confidence 9999999654 369999999999997 6799999 99997666 566679999999999999999 79999999
Q ss_pred HHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC-ceEEecHHHHHHHH
Q psy1918 193 VKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ-KFKTLDERETGHYL 238 (251)
Q Consensus 193 ~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~-~~~~l~~~ei~~~l 238 (251)
++++++||+.++++|. .++++++|++|+++| .+++|+++||++++
T Consensus 152 ~~la~~al~~~~~~d~-~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~ 197 (199)
T 3unf_N 152 RRFTTNAITLAMNRDG-SSGGVIYLVTITAAGVDHRVILGDELPKFY 197 (199)
T ss_dssp HHHHHHHHHHHHHHCT-TCCSCEEEEEECSSCEEEEEECGGGSCCCC
T ss_pred HHHHHHHHHHHHHhcc-ccCCCeEEEEEcCCCEEEEEcCcccCcccc
Confidence 9999999999999996 788999999999997 58899999998765
No 44
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=1.1e-41 Score=283.88 Aligned_cols=188 Identities=20% Similarity=0.288 Sum_probs=172.0
Q ss_pred CcEEEeeeCCeEEEEEeccCccc-cc--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918 38 SATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 114 (251)
Q Consensus 38 ~tvigi~~~dgVvla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la 114 (251)
+|+|||+++||||||+|++.+++ +. ++.+||++|++|++|++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 81 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999986 43 5889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHH
Q psy1918 115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV 193 (251)
Q Consensus 115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~ 193 (251)
+++++.+. |..+. .|||++++||||||+ +||+||.+||.|++.+++++|+|+|++.++++||+.|+ ++||++||+
T Consensus 82 ~~~~~~l~-~~~~~-~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~~s~eea~ 157 (201)
T 1iru_K 82 NFTRRNLA-DCLRS-RTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYT--PTISRERAV 157 (201)
T ss_dssp HHHHHHHH-HHHTS-SSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCC--TTCCHHHHH
T ss_pred HHHHHHHH-HHHhc-CCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhccc--CCCCHHHHH
Confidence 99987653 22222 379999999999997 68999999999999999999999999999999999998 699999999
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecH
Q psy1918 194 KHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDE 231 (251)
Q Consensus 194 ~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~ 231 (251)
+++++||+.+.+||. .++.+++|++|+++| ++++.+
T Consensus 158 ~l~~~al~~a~~rd~-~sg~~i~v~vi~~~g-~~~~~~ 193 (201)
T 1iru_K 158 ELLRKCLEELQKRFI-LNLPTFSVRIIDKNG-IHDLDN 193 (201)
T ss_dssp HHHHHHHHHHHHTBC-BCCCCEEEEEEETTE-EECCCC
T ss_pred HHHHHHHHHHHhhcc-ccCCceEEEEEcCCC-eEEeec
Confidence 999999999999996 788999999999986 777653
No 45
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=1.8e-41 Score=289.13 Aligned_cols=187 Identities=20% Similarity=0.247 Sum_probs=174.7
Q ss_pred CcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918 38 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 114 (251)
Q Consensus 38 ~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la 114 (251)
+|+|||+++||||||+|+|.++++. ++.+||++|++|++|++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 6899999999999999999999874 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHH
Q psy1918 115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK 194 (251)
Q Consensus 115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~ 194 (251)
+++++.++.| .+||++++||||||++||+||.+||+|++.+++++|+|+|++.++++|++.|+ ++|+++||++
T Consensus 81 ~~l~~~l~~~-----~~~~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~ms~eeA~~ 153 (234)
T 1iru_I 81 RMLKQMLFRY-----RGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFR--PDMEEEEAKN 153 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEECSSCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCC--TTCCHHHHHT
T ss_pred HHHHHHHHhc-----CCCCceeEEEEEEcCCCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhcc--CCCCHHHHHH
Confidence 9999988554 25999999999999999999999999999999999999999999999999998 6999999999
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHH
Q psy1918 195 HGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERE 233 (251)
Q Consensus 195 ~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~e 233 (251)
++++||+.++.+|. .++++++|++|+++| ++++.+.+
T Consensus 154 la~~al~~a~~~d~-~sg~~i~v~vi~k~g-~~~~~~~~ 190 (234)
T 1iru_I 154 LVSEAIAAGIFNDL-GSGSNIDLCVISKNK-LDFLRPYT 190 (234)
T ss_dssp HHHHHHHHHHHHCT-TCCSCEEEEEEETTE-EECCSEEE
T ss_pred HHHHHHHHHHHhcc-cCCCCEEEEEEECCc-EEEEccee
Confidence 99999999999995 688999999999986 88776543
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=8.3e-35 Score=238.51 Aligned_cols=167 Identities=14% Similarity=0.073 Sum_probs=146.3
Q ss_pred hcCCcEEEeeeCCeEEEEEeccCccc-c-c--cccCceEEE-cCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy1918 35 KQGSATVGLKNKTHAVIIALKRAASE-L-A--AHQKKIIVI-DDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLP 109 (251)
Q Consensus 35 ~~G~tvigi~~~dgVvla~d~~~~~~-l-~--~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~ 109 (251)
.+|+|+|||+++||||||+|++.+++ + . ++.+||++| ++|++|+++|..+|++.+.++++.+++.|+ + +
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g---~ 76 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G---N 76 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T---C
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C---C
Confidence 57999999999999999999999985 4 4 578999999 999999999999999999999999999987 3 2
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeee--eeEEEEcCChHHHHHHHHHhhcCCC--
Q psy1918 110 VFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYD--VKAMAIGSRSQSARTYLEKRLADFP-- 185 (251)
Q Consensus 110 ~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~--~~~~a~G~g~~~a~~~L~~~~~~~~-- 185 (251)
+ .+.++++.+.++++...|||++++||| +||+||.+||.|++.+ +++.|+|+|++.|+++||+.|+ +
T Consensus 77 ~---~~~~~~l~~~~~~~~~~rp~~~~~lva----d~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~--~~~ 147 (180)
T 2z3b_A 77 L---KRAAVELAKEWRSDKVLRKLEAMLIVM----NQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKK--HAG 147 (180)
T ss_dssp H---HHHHHHHHHHHHHCTTGGGCCCCEEEE----CSSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHH--HHG
T ss_pred h---HHHHHHHHHHHHhhhCcCcceEEEEEE----cCCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhh--ccC
Confidence 2 222233344456677789999999999 4799999999999997 5999999999999999999998 5
Q ss_pred -CCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEE
Q psy1918 186 -EASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLV 220 (251)
Q Consensus 186 -~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii 220 (251)
+|+.||+ +++||+.+.+||. .++++++|.+|
T Consensus 148 ~~mt~eel---~~~al~~a~~rd~-~sg~~i~v~~i 179 (180)
T 2z3b_A 148 ESMSASEI---ARAALETAGEICV-YTNDQIILEEL 179 (180)
T ss_dssp GGCCHHHH---HHHHHHHHHHHCT-TCCSCCEEEEE
T ss_pred CCCCHHHH---HHHHHHHHHHhcC-ccCCeEEEEEE
Confidence 8999994 6799999999996 89999999988
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=7.7e-34 Score=230.84 Aligned_cols=165 Identities=18% Similarity=0.105 Sum_probs=142.6
Q ss_pred CcEEEeeeCCeEEEEEeccCccc-cc--cccCceEEE-cCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHH
Q psy1918 38 SATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVI-DDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRL 113 (251)
Q Consensus 38 ~tvigi~~~dgVvla~d~~~~~~-l~--~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~l 113 (251)
+|+|||+++||||||+|+|.+++ +. ++.+||++| ++|++|+++|..+|++.+.++++.+++.|+.+ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 68999999999999999999986 32 578999999 99999999999999999999999999998754 24555
Q ss_pred HHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeee--EEEEcCChHHHHHHHHHhhcCCCCCCHHH
Q psy1918 114 ISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVK--AMAIGSRSQSARTYLEKRLADFPEASLEE 191 (251)
Q Consensus 114 a~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~--~~a~G~g~~~a~~~L~~~~~~~~~~s~~e 191 (251)
+++.+ .+.++.+.|||+++++++ | ||+||.+||.|++.+++ +.|+|+|++.++++||+.|+. ++|+.
T Consensus 76 ~~l~~----~~~~~~~~~~~~~~~lv~--D--~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~-~~ms~-- 144 (171)
T 1m4y_A 76 VELAK----DWRTDRVLRRLEALLLVA--D--KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRN-TDLSA-- 144 (171)
T ss_dssp HHHHH----HHHHCTTGGGCCCEEEEE--C--SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHH-CCCCH--
T ss_pred HHHHH----HHHHhCCCCceEEEEEEE--c--CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhccc-CCCCH--
Confidence 55432 344455668999999998 5 89999999999999988 999999999999999999983 48996
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCeEEEEEE
Q psy1918 192 IVKHGLRALRDTLPNDSELTTKNVSIGLV 220 (251)
Q Consensus 192 a~~~~~~al~~~~~~d~~~~~~~iei~ii 220 (251)
++++++||+.+.+||. .++++++|.++
T Consensus 145 -~~l~~~al~~a~~rd~-~sg~~i~v~~~ 171 (171)
T 1m4y_A 145 -REIVEKAMTIAGEICI-YTNQNIVIEEV 171 (171)
T ss_dssp -HHHHHHHHHHHHHHCT-TCCSCCEEEEC
T ss_pred -HHHHHHHHHHHHHhCc-ccCCeEEEEEC
Confidence 6689999999999996 78999999864
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=1e-33 Score=230.75 Aligned_cols=166 Identities=15% Similarity=0.089 Sum_probs=143.7
Q ss_pred CcEEEeeeCCeEEEEEeccCccc-cc--cccCceEEE-cCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHH
Q psy1918 38 SATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVI-DDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRL 113 (251)
Q Consensus 38 ~tvigi~~~dgVvla~d~~~~~~-l~--~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~l 113 (251)
+|+|||+++||||||+|++.+++ +. ++.+||++| ++|++++++|..+|++.+.++++.+++.|++ ++...
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~ 74 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS 74 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence 68999999999999999999987 32 578999999 9999999999999999999999999999975 34444
Q ss_pred HHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeee---EEEEcCChHHHHHHHHHhhcCCCCCCHH
Q psy1918 114 ISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVK---AMAIGSRSQSARTYLEKRLADFPEASLE 190 (251)
Q Consensus 114 a~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~---~~a~G~g~~~a~~~L~~~~~~~~~~s~~ 190 (251)
+..|++. ++++.+.||+ +++++|+| ||+||.+||+|++.+++ +.|+|+|++.++++||+.|+. ++|+.+
T Consensus 75 ~~~l~~~---~~~~~~~r~~--~~~l~g~d--~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~-~~mt~~ 146 (174)
T 1g3k_A 75 AVELAKD---WRTDRALRKL--EAMLIVAD--EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVEN-TELSAH 146 (174)
T ss_dssp HHHHHHH---HHHSTTGGGC--CCEEEEEC--SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHH-CCCCHH
T ss_pred HHHHHHH---HHhccCcCcc--eEEEEEEC--CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhccc-CCCCHH
Confidence 4455544 4555566775 57788887 79999999999999988 999999999999999999984 489955
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCeEEEEEEe
Q psy1918 191 EIVKHGLRALRDTLPNDSELTTKNVSIGLVG 221 (251)
Q Consensus 191 ea~~~~~~al~~~~~~d~~~~~~~iei~ii~ 221 (251)
+++++||+.+.+||. .++++++|++|+
T Consensus 147 ---~l~~~al~~a~~rd~-~sg~~i~v~~i~ 173 (174)
T 1g3k_A 147 ---EIVEKSLRIAGDICV-FTNTNFTIEELP 173 (174)
T ss_dssp ---HHHHHHHHHHHHHCT-TCCSCCEEEEEC
T ss_pred ---HHHHHHHHHHHHhcc-ccCCceEEEEec
Confidence 788999999999996 789999999985
No 49
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=65.28 E-value=17 Score=25.27 Aligned_cols=54 Identities=11% Similarity=0.064 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC-ceEEecHHHHHHHHHHhhhhh
Q psy1918 185 PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ-KFKTLDERETGHYLSLIEGEE 245 (251)
Q Consensus 185 ~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~-~~~~l~~~ei~~~l~~~~~~~ 245 (251)
++++.++..+..++.++. ..+..+.+.+++++| .+.+.+.+|++..++-++..+
T Consensus 24 ~~i~~~~L~~kv~~~~~~-------~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~ 78 (89)
T 1vd2_A 24 PSISFEGLCNEVRDMCSF-------DNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNK 78 (89)
T ss_dssp TTCCHHHHHHHHHHHTTC-------CSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHhCC-------CCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccC
Confidence 578899998888876652 134579999999987 478889999999998776444
No 50
>3rj2_X ORF158L protein, putative uncharacterized protein; histone 3, protein binding; 2.20A {Singapore grouper iridovirus}
Probab=64.43 E-value=1.4 Score=32.36 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=19.0
Q ss_pred ccccc-cccCCCCceeecCCCcchh
Q psy1918 3 VYWKF-RNQYDSDVTVWSPQGRLHQ 26 (251)
Q Consensus 3 ~~~~~-~~~yd~~~t~fsp~G~l~Q 26 (251)
+||.. ..+-|..+|.|+|+||+.-
T Consensus 46 ~Y~i~ge~gm~h~vTfF~~~Grl~~ 70 (138)
T 3rj2_X 46 RYSVDGEMFMRHRVTFFNATGRYIT 70 (138)
T ss_dssp EEEEECCTTCEEEEEEECTTSCEEE
T ss_pred EEEEcCcCcceeEEEEEcCCCcEEE
Confidence 45554 7788999999999998754
No 51
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=41.28 E-value=16 Score=28.52 Aligned_cols=30 Identities=3% Similarity=-0.059 Sum_probs=27.4
Q ss_pred eeecCCCcc-hhhchHHHHHhcCCcEEEeee
Q psy1918 16 TVWSPQGRL-HQVEYAMEAVKQGSATVGLKN 45 (251)
Q Consensus 16 t~fsp~G~l-~QvEya~~a~~~G~tvigi~~ 45 (251)
-+||+.|+- .-||.|+++.++|-++|||..
T Consensus 82 ii~S~Sg~n~~~ie~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 82 LIFTPDTERSDLLASLARYDAWHTPYSIITL 112 (170)
T ss_dssp EEEESCSCCHHHHHHHHHHHHHTCCEEEEES
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 479999995 599999999999999999998
No 52
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=29.86 E-value=31 Score=27.93 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=27.8
Q ss_pred eeecCCCcchhhchHHHHHhcCCcEEEeeeCCe
Q psy1918 16 TVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTH 48 (251)
Q Consensus 16 t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dg 48 (251)
|.||++|..---|++..|.+.|-+.||++=.+-
T Consensus 8 t~~S~DG~~~~ee~v~~A~~~Gl~~iaiTDH~~ 40 (267)
T 2yxo_A 8 TPLCGHAEGHPEAYLEEARAKGLKGVVFTDHSP 40 (267)
T ss_dssp CGGGSSCCSCHHHHHHHHHHTTCSEEEEEEECC
T ss_pred cCCCCCCCCCHHHHHHHHHHcCCCEEEEcCCCC
Confidence 478999998667999999999999999876643
No 53
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=25.11 E-value=18 Score=24.30 Aligned_cols=41 Identities=20% Similarity=0.342 Sum_probs=24.7
Q ss_pred CCCCceeecCCCcchhhch-------HHHH-HhcCCcEEEeeeCCeEEEE
Q psy1918 11 YDSDVTVWSPQGRLHQVEY-------AMEA-VKQGSATVGLKNKTHAVII 52 (251)
Q Consensus 11 yd~~~t~fsp~G~l~QvEy-------a~~a-~~~G~tvigi~~~dgVvla 52 (251)
|...+.+|+|+|+++.+.- |..- ..-|..++|.+.+ |-++.
T Consensus 4 ~~~~i~v~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkVN-G~~v~ 52 (78)
T 3hvz_A 4 APEEVFVFTPKGDVISLPIGSTVIDFAYAIHSAVGNRMIGAKVD-GRIVP 52 (78)
T ss_dssp --CEEEEECTTSCEEEEETTCBHHHHHHHHCHHHHHTEEEEEET-TEEEC
T ss_pred cCceEEEECCCCCEEEecCCCCHHHHHHHhhhhhhcceEEEEEC-CEEcC
Confidence 5667899999999987554 2221 1235677887774 44433
No 54
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=24.68 E-value=1e+02 Score=19.01 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=23.8
Q ss_pred HHHHHHHhhcCCCCCCHH--HHHHHHHHHHHhhCCCC
Q psy1918 173 ARTYLEKRLADFPEASLE--EIVKHGLRALRDTLPND 207 (251)
Q Consensus 173 a~~~L~~~~~~~~~~s~~--ea~~~~~~al~~~~~~d 207 (251)
+..||...... ..++.| |.++.|++||..+++-|
T Consensus 9 Ii~FL~~~~~~-~~~s~D~~ESleVAiqCi~~aF~v~ 44 (52)
T 4gof_A 9 IIQFLHDQLRH-GGLSSDAQESLEVAIQCLETAFGVT 44 (52)
T ss_dssp HHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhccc-CCcCHhHHHHHHHHHHHHHHHcCCC
Confidence 45566665443 356654 68999999999999654
No 55
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=22.47 E-value=1.3e+02 Score=20.83 Aligned_cols=35 Identities=9% Similarity=0.200 Sum_probs=24.8
Q ss_pred HHHHHHHHhhcCCCCCCHH--HHHHHHHHHHHhhCCCC
Q psy1918 172 SARTYLEKRLADFPEASLE--EIVKHGLRALRDTLPND 207 (251)
Q Consensus 172 ~a~~~L~~~~~~~~~~s~~--ea~~~~~~al~~~~~~d 207 (251)
.+..||...... ..++.| |.++.|++||..+++-|
T Consensus 25 sIIdFL~~sv~~-~~ls~D~~ESLEVAIqCI~~AF~Vd 61 (92)
T 4asv_A 25 LIVNYFSSIVEK-KEISEDGADSLNVAMDCISEAFGFE 61 (92)
T ss_dssp HHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhccc-CCcCHHHHHHHHHHHHHHHHHhCCC
Confidence 345667666543 467754 68899999999999543
No 56
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=20.61 E-value=1.6e+02 Score=19.49 Aligned_cols=35 Identities=9% Similarity=0.200 Sum_probs=24.7
Q ss_pred HHHHHHHHhhcCCCCCCHH--HHHHHHHHHHHhhCCCC
Q psy1918 172 SARTYLEKRLADFPEASLE--EIVKHGLRALRDTLPND 207 (251)
Q Consensus 172 ~a~~~L~~~~~~~~~~s~~--ea~~~~~~al~~~~~~d 207 (251)
.+..||...... ..++.| |.++.|++||..+++-|
T Consensus 13 sIi~FL~~~~~~-~~ls~D~~ESLeVAiqCI~~aF~v~ 49 (74)
T 2lxb_A 13 LIVNYFSSIVEK-KEISEDGADSLNVAMDCISEAFGFE 49 (74)
T ss_dssp HHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhccc-CCcCHHHHHHHHHHHHHHHHHhCCC
Confidence 345667665543 467754 68899999999999644
Done!