RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1918
(251 letters)
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 238
Score = 246 bits (628), Expect = 5e-83
Identities = 155/238 (65%), Positives = 201/238 (84%)
Query: 9 NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKI 68
NQYD+DVTVWSPQGR+HQ+EYAMEAVKQGSATVGLK+KTHAV++ALKRA SELAAHQKKI
Sbjct: 1 NQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKI 60
Query: 69 IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
+ +D+H+G+S AGLTADAR+L FMR ECL+ ++ LPV RL+S++G+K Q+ TQRY
Sbjct: 61 LHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRY 120
Query: 129 DKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS 188
+RPYGVGLL+AGYDD GPHI+QTCPS+NY+D +AM+IG+RSQSARTYLE+ +++F E +
Sbjct: 121 GRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECN 180
Query: 189 LEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEER 246
L E+VKHGLRALR+TLP + +LTTKNVSIG+VG++ +F D+ + +L +E +
Sbjct: 181 LNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQ 238
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 234 bits (597), Expect = 3e-78
Identities = 110/234 (47%), Positives = 153/234 (65%), Gaps = 3/234 (1%)
Query: 7 FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
FRN YD D +SP GRL QVEYA+EA+KQGS TVGL++ THAV++ALKR A EL+++QK
Sbjct: 1 FRNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQK 60
Query: 67 KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
KII D+HMGLS AGL DAR+L+ ++R +C L V R ++ +K Q TQ
Sbjct: 61 KIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQ 120
Query: 127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADF-- 184
Y RPYGVGLL+ GYD +G H+ + PS N ++ AIG+RSQ A+TYLE+ L F
Sbjct: 121 SYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIK 180
Query: 185 PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
+ + +E++K G+ A+ +L ++S LT N+SI +VG++ F D Y+
Sbjct: 181 IDGNPDELIKAGVEAISQSLRDES-LTVDNLSIAIVGKDTPFTIYDGEAVAKYI 233
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 213 bits (543), Expect = 4e-70
Identities = 83/239 (34%), Positives = 139/239 (58%), Gaps = 7/239 (2%)
Query: 11 YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKI 68
YD +TV+SP G L QVEYA EAVK+GS VG++ + V+ K++ ++L + +KI
Sbjct: 2 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKI 61
Query: 69 IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
+DD++ ++FAGLTADARI+ R+EC +++ +D + V + + + Q TQ
Sbjct: 62 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 121
Query: 129 DKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA 187
+RP+G+ L+ G+D P +YQT PS Y+ KA AIG ++S R +LEK D
Sbjct: 122 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 181
Query: 188 SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEER 246
+ + +K ++AL + + + KN+ + ++ ++Q K L+ E Y++ IE E+
Sbjct: 182 TDDLTIKLVIKALLEVV----QSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKE 236
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 212 bits (542), Expect = 8e-70
Identities = 75/241 (31%), Positives = 128/241 (53%), Gaps = 9/241 (3%)
Query: 11 YDSDVTVWSPQGRLHQVEYAMEAVKQGSAT-VGLKNKTHAVIIALKRAASEL--AAHQKK 67
+D +T++SP+GRL+QVEYA +A+ QG T V ++ K AVI+ K+ +L ++
Sbjct: 8 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 67
Query: 68 IIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQR 127
+ I +++G G+TAD+R + R E N+KY + +PV L + + QV TQ
Sbjct: 68 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN 127
Query: 128 YDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
+ RP G +++ G D + GP +Y+ P+ Y KA A G + + ++LEK++ +
Sbjct: 128 AEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD 187
Query: 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVG-QNQKFKTLDERETGHYLSLIEGEE 245
+ E+ V+ + L L D + +G+V +N KF+ L E E +L + E
Sbjct: 188 WTFEQTVETAITCLSTVLSID--FKPSEIEVGVVTVENPKFRILTEAEIDAHLVAL--AE 243
Query: 246 R 246
R
Sbjct: 244 R 244
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 241
Score = 206 bits (525), Expect = 2e-67
Identities = 86/242 (35%), Positives = 131/242 (54%), Gaps = 10/242 (4%)
Query: 11 YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK---K 67
YD ++++SP G + QVEYA+EAVK+G+ VG+K K V+ +R+ +L + K
Sbjct: 2 YDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSK 61
Query: 68 IIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQR 127
+ ID H+ LSF+GL AD+RIL R+E +++ +D + V L V Q TQ
Sbjct: 62 VSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQS 121
Query: 128 YDKRPYGVGLLVAGYDD--AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRL-ADF 184
RP+GV L+AG+D P +YQT PS Y A IG S++ R +LEK
Sbjct: 122 GGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKE 181
Query: 185 PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGE 244
P A++EE VK +R+L + + + KN+ I +V + L E Y++ IE E
Sbjct: 182 PPATVEECVKLTVRSLLEVV----QTGAKNIEITVVKPDSDIVALSSEEINQYVTQIEQE 237
Query: 245 ER 246
++
Sbjct: 238 KQ 239
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 205 bits (523), Expect = 4e-67
Identities = 73/238 (30%), Positives = 116/238 (48%), Gaps = 11/238 (4%)
Query: 11 YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKI 68
YD V +SP+GRL QVEY +EA+K GS +G++ + KR S L +KI
Sbjct: 1 YDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKI 60
Query: 69 IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
+ ID H+G + +GL ADA+ L R+E N+ + + +T+ V + V N +
Sbjct: 61 VEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEED 120
Query: 129 DK-----RPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLAD 183
RP+GV LL G D+ GP ++ PS + A AIGS S+ A++ L++
Sbjct: 121 ADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELY-- 178
Query: 184 FPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLI 241
+L+E +K L L+ + + +L N+ + V Q F + E + I
Sbjct: 179 HKSMTLKEAIKSSLIILKQVM--EEKLNATNIELATVQPGQNFHMFTKEELEEVIKDI 234
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 204 bits (521), Expect = 1e-66
Identities = 74/240 (30%), Positives = 110/240 (45%), Gaps = 7/240 (2%)
Query: 11 YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK--KI 68
YD +V+SP GR QVEYA++AV+ G+ ++G+K V K S+L QK KI
Sbjct: 4 YDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKI 63
Query: 69 IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
V+D H+G ++GL D R L R E ++K +K +P+ +G +Q T
Sbjct: 64 QVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYN 123
Query: 129 DKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA- 187
RP+GV + G D G H+Y PS +Y+ K A G QSA+ LEK + PE
Sbjct: 124 SVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGL 183
Query: 188 SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQ---NQKFKTLDERETGHYLSLIEGE 244
S E VK + + D++ + I N K + + + E
Sbjct: 184 SAREAVKQAAKIIYLAH-EDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDFAQKE 242
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 201 bits (512), Expect = 3e-65
Identities = 73/244 (29%), Positives = 128/244 (52%), Gaps = 9/244 (3%)
Query: 11 YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL---AAHQKK 67
YDS T++SP+GRL+QVEYAMEA+ +G+ ++ A +R +L +K
Sbjct: 4 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK 63
Query: 68 IIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQR 127
I +++ M S AG+T+DA +L +R+ Y +++ +P +L++ + + Q TQ
Sbjct: 64 IYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQF 123
Query: 128 YDKRPYGVGLLVAGYDDA-GPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
KRP+GV LL G+D G +YQ+ PS NY KA IG+ S +A + L++ + E
Sbjct: 124 GGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE-GE 182
Query: 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ---KFKTLDERETGHYLSLIEG 243
+L+ + ++ L T+ +L+ + V I + + + L ++E + E
Sbjct: 183 MTLKSALALAIKVLNKTMDVS-KLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHEE 241
Query: 244 EERR 247
EE +
Sbjct: 242 EEAK 245
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 199 bits (506), Expect = 2e-64
Identities = 82/239 (34%), Positives = 127/239 (53%), Gaps = 8/239 (3%)
Query: 11 YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKI 68
YD +TV+SP GRL QVEYA EAVK+G+ +G+K K ++IA KR S+L +KI
Sbjct: 5 YDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKI 64
Query: 69 IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
ID+H+ + +GL ADAR+L R+E + + + V L + + Q TQ
Sbjct: 65 YKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYG 124
Query: 129 DKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS 188
RP+GV LL+AG ++ P +Y+T PS + KA AIG + + EK + S
Sbjct: 125 GVRPFGVSLLIAGVNE-VPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEY--RDDLS 181
Query: 189 LEEIVKHGLRALRDTLPNDSELTTKNVSIGLVG-QNQKFKTLDERETGHYLSLIEGEER 246
++ + GL A+ ++ +SEL +N+ +G V ++ FK + E Y+ R
Sbjct: 182 FDDAMVLGLVAMGLSI--ESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIR 238
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 245
Score = 197 bits (503), Expect = 5e-64
Identities = 64/226 (28%), Positives = 104/226 (46%), Gaps = 8/226 (3%)
Query: 11 YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL--AAHQKKI 68
YD + +SP GR+ QVEYAM+AV+ S +G++ K V K S+L K++
Sbjct: 7 YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRL 66
Query: 69 IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
+D H+G++ AGL ADAR LA R E N++ +P+ L V + T
Sbjct: 67 FNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYS 126
Query: 129 DKRPYGVGLLVAGYDDAG-PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA 187
RP+G ++ Y +Y PS Y AIG Q+A+T +EK E
Sbjct: 127 AVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKL--QMKEM 184
Query: 188 SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVG--QNQKFKTLDE 231
+ +IVK + + ++ + + + VG N + + + +
Sbjct: 185 TCRDIVKEVAKIIYIVH-DEVKDKAFELELSWVGELTNGRHEIVPK 229
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 242
Score = 197 bits (501), Expect = 1e-63
Identities = 75/243 (30%), Positives = 120/243 (49%), Gaps = 13/243 (5%)
Query: 12 DSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAH--QKKII 69
D V+ +SP+GRL QVEY++EA+K GS +G+ K V+ KRA S L +KI+
Sbjct: 1 DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIV 60
Query: 70 VIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ--- 126
ID H+G + +GLTADAR + R + + + + + V L V + +
Sbjct: 61 EIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGAS 120
Query: 127 ---RYDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLA 182
R RP+GV LL+AG+D D G ++ PS +Y A AIGS S+ A+ L
Sbjct: 121 GEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEW- 179
Query: 183 DFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIE 242
+L+E L+ L+ + + +L N + + + FK D +T + ++
Sbjct: 180 -HSSLTLKEAELLVLKILKQVM--EEKLDENNAQLSCITKQDGFKIYDNEKTAELIKELK 236
Query: 243 GEE 245
+E
Sbjct: 237 EKE 239
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 196 bits (498), Expect = 3e-63
Identities = 68/239 (28%), Positives = 120/239 (50%), Gaps = 12/239 (5%)
Query: 9 NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAA---HQ 65
+YDS T++SP+GRL+QVEYA+E++ +G+ V+ A ++ S L
Sbjct: 3 RRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTST 62
Query: 66 KKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCT 125
+K+ ++D + ++ AGLTADA IL R+ NY + + +PV L+ + + Q T
Sbjct: 63 EKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYT 122
Query: 126 QRYDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADF 184
Q RP+GV + AGYD G +Y + PS NY KA+++G+ + +A+T L+
Sbjct: 123 QHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMD--YK 180
Query: 185 PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQK-----FKTLDERETGHYL 238
+ +++ ++ L+ L T + + LT + + + K +E L
Sbjct: 181 DDMKVDDAIELALKTLSKTTDSSA-LTYDRLEFATIRKGANDGEVYQKIFKPQEIKDIL 238
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 250
Score = 196 bits (498), Expect = 4e-63
Identities = 77/252 (30%), Positives = 129/252 (51%), Gaps = 23/252 (9%)
Query: 9 NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--K 66
++Y +T +SP G+L Q++YA+ AVKQG ++G+K VI K+++S LA +
Sbjct: 3 DRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLS 62
Query: 67 KIIVIDDHMGLSFAGLTADARILARFMRMEC-LNYKYAHKDTLPVFRLISIVGNKMQVCT 125
K+ ++ +G ++G+ D R+L R +YK + + P L+S V MQ T
Sbjct: 63 KVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEAT 122
Query: 126 QRYDKRPYGVGLLVAGYDDA-GPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADF 184
Q RP+GV LL+AG+D+ G +YQ PS +Y+ KA AIG S +A+T+LEKR
Sbjct: 123 QSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRW--N 180
Query: 185 PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ---------------KFKTL 229
E LE+ + L L++++ + E + + ++G +F+ L
Sbjct: 181 DELELEDAIHIALLTLKESV--EGEFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKL 238
Query: 230 DERETGHYLSLI 241
+E L +
Sbjct: 239 TSQEINDRLEAL 250
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit
(non-catalytic) {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 221
Score = 192 bits (489), Expect = 3e-62
Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 6/225 (2%)
Query: 16 TVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKIIVIDD 73
TV+SP GRL QVEYA EAVK+GS +G+K ++I+ K+ S L +KI +IDD
Sbjct: 1 TVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDD 60
Query: 74 HMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPY 133
++ +GL ADAR+L F R+ K + + + L+ V ++MQ TQ RPY
Sbjct: 61 YVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPY 120
Query: 134 GVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV 193
GV L+ AG D GP ++ P+ + KA AIGS + ++LE+ +E V
Sbjct: 121 GVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREY--KENLPEKEAV 178
Query: 194 KHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
G++AL+ +L EL K I + K++ D+ E +L
Sbjct: 179 TLGIKALKSSLEEGEEL--KAPEIASITVGNKYRIYDQEEVKKFL 221
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 243
Score = 193 bits (491), Expect = 4e-62
Identities = 71/244 (29%), Positives = 113/244 (46%), Gaps = 12/244 (4%)
Query: 11 YDSDVTVWSPQGRLHQVEYAMEAVKQGSAT-VGLKNKTHAVIIALKRAASELAAH--QKK 67
YD +T++SP+GRL+QVEYA +A Q + + ++ K V+I+ K+ +L
Sbjct: 3 YDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSY 62
Query: 68 IIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQR 127
I I +G+ G DAR A + E ++Y + +P L + N Q+ TQR
Sbjct: 63 IFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQR 122
Query: 128 YDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRL----- 181
RP GV L D + GP IY+T P+ Y KA A G + Q T LE
Sbjct: 123 AYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKI 182
Query: 182 ADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLI 241
E S E++V+ + + D L + + ++ +G+ ++ KF TL L I
Sbjct: 183 DHINEESWEKVVEFAITHMIDALGTE--FSKNDLEVGVATKD-KFFTLSAENIEERLVAI 239
Query: 242 EGEE 245
++
Sbjct: 240 AEQD 243
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 233
Score = 190 bits (484), Expect = 2e-61
Identities = 71/233 (30%), Positives = 125/233 (53%), Gaps = 7/233 (3%)
Query: 11 YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKI 68
Y +T +SP G+L Q+EYA+ AV G+ +VG+K V+ K+ S L + K+
Sbjct: 5 YSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKV 64
Query: 69 IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
I H+GL ++G+ D R+L R Y +++ +P +L+ V + MQ TQ
Sbjct: 65 EPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSG 124
Query: 129 DKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS 188
RP+GV LL+ G+++ P+++Q+ PS Y+ KA A+G + +T+LEKR +
Sbjct: 125 GVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKR--YNEDLE 182
Query: 189 LEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLI 241
LE+ + + L+++ + ++T N+ +G+ + F+ L E YL+ I
Sbjct: 183 LEDAIHTAILTLKESF--EGQMTEDNIEVGICNEA-GFRRLTPTEVKDYLAAI 232
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 227
Score = 157 bits (399), Expect = 2e-48
Identities = 31/225 (13%), Positives = 77/225 (34%), Gaps = 18/225 (8%)
Query: 26 QVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTAD 85
+ E A + + +G + V L + + +A + + K+ + D +G + G +
Sbjct: 8 RSELARKGIARGRSVVVLTFRDGVLFVAENPSTA-----LHKVSELYDRLGFAAVGKYNE 62
Query: 86 ARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD-- 143
L R + Y++ R ++ + +PY V + VA
Sbjct: 63 FENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRV 122
Query: 144 --DAGPHIYQTCPSSNYYDVKAMAIG-SRSQSARTYLEKRLADFPEASLEEIVKHGLRAL 200
P +Y+ + D + + ++ T + + + LE V + AL
Sbjct: 123 GSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYR--ADLDLEAAVGIAVNAL 180
Query: 201 RDTLPNDS---ELTTKNVSIGLVGQNQ---KFKTLDERETGHYLS 239
R + + ++ + ++ Q++ F+ + +
Sbjct: 181 RQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIAGTALEQLVP 225
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 114 bits (287), Expect = 8e-32
Identities = 32/213 (15%), Positives = 78/213 (36%), Gaps = 11/213 (5%)
Query: 31 MEAVKQGSATVGLKNKTHAVIIALKRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADAR 87
+ + G++ + +K +I A L +++I + D+ + +G +D +
Sbjct: 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQ 61
Query: 88 ILARFMRMECLNYKYAHKDTLPVFRLISIVGNKM---QVCTQRYDKRPYGVGLLVAGYDD 144
+ R ++ Y + L + + +R P ++VAG
Sbjct: 62 HIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQS 121
Query: 145 AGPH-IYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRL---ADFPEASLEEIVKHGLRAL 200
G + Y +A G + A L K + +D P+ +++ + + A+
Sbjct: 122 NGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAM 181
Query: 201 RDTLPNDSELTTKNVSIGLVGQNQKFKTLDERE 233
R D+ +++N S+ ++ +N +
Sbjct: 182 RVLYYRDA-RSSRNFSLAIIDKNTGLTFKKNLQ 213
>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 113 bits (283), Expect = 2e-31
Identities = 35/209 (16%), Positives = 72/209 (34%), Gaps = 23/209 (11%)
Query: 34 VKQGSATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADARILA 90
G +G+ + AV+ R ++ + ++ K+ D++ +S G AD L
Sbjct: 6 GDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALV 65
Query: 91 RFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAGPHI 149
+ + Y + H D + +Q PY V ++AG D D +
Sbjct: 66 KRFKNSVKWYHFDHNDKKLSINSAA---RNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAV 122
Query: 150 YQTCPSSNYYDVKAMAIGSRSQSARTYLEKRL---------------ADFPEASLEEIVK 194
Y P +Y + A G+ + +L+ ++ S+EE++K
Sbjct: 123 YSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIK 182
Query: 195 HGLRALRDTLPNDSELTTKNVSIGLVGQN 223
+ + I +V ++
Sbjct: 183 LVRDSFTSATERHI-QVGDGLEILIVTKD 210
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 217
Score = 105 bits (264), Expect = 1e-28
Identities = 33/196 (16%), Positives = 72/196 (36%), Gaps = 7/196 (3%)
Query: 32 EAVKQGSATVGLKNKTHAVIIALKRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADARI 88
+ G++ +G+K + VI A LA + +I+ +++ L +G AD +
Sbjct: 3 NPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQY 62
Query: 89 LARFMRMECLNYKYA-HKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGP 147
L + + ++ + + + S + + ++R P +++ GY D
Sbjct: 63 LKQVLGQMVIDEELLGDGHSYSPRAIHSWLTR--AMYSRRSKMNPLWNTMVIGGYADGES 120
Query: 148 HIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPND 207
+ Y+ ++A G + A+ L + L P S E R +R D
Sbjct: 121 FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRD 180
Query: 208 SELTTKNVSIGLVGQN 223
+ + V +
Sbjct: 181 A-RSYNRFQTATVTEK 195
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 202
Score = 102 bits (255), Expect = 1e-27
Identities = 56/207 (27%), Positives = 88/207 (42%), Gaps = 12/207 (5%)
Query: 40 TVGLKNKTHAVIIALKRAASE---LAAHQKKIIVIDDHMGLSFAGLTADARILARFMRME 96
TVGL K V+ KRA + KKI I D M ++ AG DA+ LAR +++E
Sbjct: 3 TVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIE 62
Query: 97 CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSS 156
Y+ + V + ++ N + Y V LL+ G D G IY P
Sbjct: 63 ANLYEIRRERKPTVRAIATLTSNLLNSYRYFP----YLVQLLIGGIDSEGKSIYSIDPIG 118
Query: 157 NYYDVK-AMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNV 215
+ K +A GS S +A LE R PE ++E V+ +RA+ + DS + +
Sbjct: 119 GAIEEKDIVATGSGSLTAYGVLEDR--FTPEIGVDEAVELAVRAIYSAMKRDS-ASGDGI 175
Query: 216 SIGLVGQNQKFKTLDERETGHYLSLIE 242
+ + ++ +F E L+
Sbjct: 176 DVVKITED-EFYQYSPEEVEQILAKFR 201
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 102 bits (256), Expect = 2e-27
Identities = 38/198 (19%), Positives = 71/198 (35%), Gaps = 11/198 (5%)
Query: 40 TVGLKNKTHAVIIALKRAASELAAHQK---KIIVIDDHMGLSFAGLTADARILARFMRME 96
VG+K VI A R+ K K+ I + + AG AD + + +
Sbjct: 3 IVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSN 62
Query: 97 CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSS 156
+ V + ++ + L+VAG D G H++
Sbjct: 63 IELHSLYTSREPRVVSALQMLKQHLFKYQGHIGA-----YLIVAGVDPTGSHLFSIHAHG 117
Query: 157 NYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVS 216
+ +++GS S +A LE + + EE +K A++ + ND + NV
Sbjct: 118 STDVGYYLSLGSGSLAAMAVLESHW--KQDLTKEEAIKLASDAIQAGIWNDL-GSGSNVD 174
Query: 217 IGLVGQNQKFKTLDERET 234
+ ++ + + L T
Sbjct: 175 VCVMEIGKDAEYLRNYLT 192
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 203
Score = 102 bits (254), Expect = 3e-27
Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 11/202 (5%)
Query: 40 TVGLKNKTHAVIIALKRAASE---LAAHQKKIIVIDDHMGLSFAGLTADARILARFMRME 96
TVG+ K ++ +R E + + KK+ ID + G++ AGL DA++L R+M+ E
Sbjct: 3 TVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAE 62
Query: 97 CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSS 156
Y+ + +P+ + +++ N + PY V LLV G D PH++ +
Sbjct: 63 LELYRLQRRVNMPIEAVATLLSNMLNQVKY----MPYMVQLLVGGIDT-APHVFSIDAAG 117
Query: 157 NYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVS 216
+ + GS S LE + + +++E V +RA+ DS + +
Sbjct: 118 GSVEDIYASTGSGSPFVYGVLESQ--YSEKMTVDEGVDLVIRAISAAKQRDS-ASGGMID 174
Query: 217 IGLVGQNQKFKTLDERETGHYL 238
+ ++ + + L + +
Sbjct: 175 VAVITRKDGYVQLPTDQIESRI 196
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 201
Score = 100 bits (249), Expect = 2e-26
Identities = 35/197 (17%), Positives = 77/197 (39%), Gaps = 11/197 (5%)
Query: 40 TVGLKNKTHAVIIALKRAASELAAHQK---KIIVIDDHMGLSFAGLTADARILARFMRME 96
T+ K + ++ A RA + + K+I I+ ++ + AG AD R + +
Sbjct: 3 TLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQ 62
Query: 97 CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSS 156
C Y+ +K+ + V ++ N + +G ++ G+D GP +Y
Sbjct: 63 CRIYELRNKERISVAAASKLLANMVYQYKG----MGLSMGTMICGWDKRGPGLYYVDSEG 118
Query: 157 NYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVS 216
N ++GS S A +++ + +E+ RA+ D+ + V+
Sbjct: 119 NRISGATFSVGSGSVYAYGVMDRGY--SYDLEVEQAYDLARRAIYQATYRDA-YSGGAVN 175
Query: 217 IGLVGQNQKFKTLDERE 233
+ V ++ + +
Sbjct: 176 LYHVRED-GWIRVSSDN 191
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 198
Score = 99.8 bits (248), Expect = 2e-26
Identities = 36/199 (18%), Positives = 75/199 (37%), Gaps = 11/199 (5%)
Query: 40 TVGLKNKTHAVIIALKRAAS---ELAAHQKKIIVIDDHMGLSFAGLTADARILARFMRME 96
+G++ + ++ + K L K + H +SFAG D A +++
Sbjct: 4 ILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQAN 63
Query: 97 CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA--GPHIYQTCP 154
Y L + S V + ++ +RPY V +L+ GYD P +YQ
Sbjct: 64 IQLYSIREDYELSPQAVSSFV--RQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDY 121
Query: 155 SSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKN 214
++ A G + L+ P+ + EE + +++ + K
Sbjct: 122 LGTKVELPYGAHGYSGFYTFSLLDHH--YRPDMTTEEGLDLLKLCVQELEKRMP-MDFKG 178
Query: 215 VSIGLVGQNQKFKTLDERE 233
V + +V ++ + +D+ +
Sbjct: 179 VIVKIVDKD-GIRQVDDFQ 196
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 204
Score = 93.8 bits (232), Expect = 5e-24
Identities = 30/203 (14%), Positives = 71/203 (34%), Gaps = 14/203 (6%)
Query: 37 GSATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADARILARFM 93
G A + +K K I A +R + +KI + D + + AGL D + +A+ +
Sbjct: 7 GGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRL 66
Query: 94 RMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGP--HIYQ 151
+ Y+ + + + + PY ++AG D I
Sbjct: 67 KFRLNLYELKEGRQIKP----YTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICS 122
Query: 152 TCPSSNYYDVKAMAIG-SRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSEL 210
+ + ++ E P + + + +A+ + + D+ +
Sbjct: 123 LDLIGCPMVTDDFVVSGTCAEQMYGMCESL--WEPNMDPDHLFETISQAMLNAVDRDA-V 179
Query: 211 TTKNVSIGLVGQNQ-KFKTLDER 232
+ V + ++ +++ +TL R
Sbjct: 180 SGMGVIVHIIEKDKITTRTLKAR 202
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 220
Score = 92.5 bits (229), Expect = 1e-23
Identities = 37/187 (19%), Positives = 69/187 (36%), Gaps = 11/187 (5%)
Query: 40 TVGLKNKTHAVIIALKRAASELAAHQK---KIIVIDDHMGLSFAGLTADARILARFMRME 96
G+ K V+ A RA + K KI I ++ AG AD + + +
Sbjct: 3 IAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSN 62
Query: 97 CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSS 156
+ + V ++ + + G L++ G D GPH+Y P
Sbjct: 63 LELHSLSTGRLPRVVTANRMLKQMLFRY-----RGYIGAALVLGGVDVTGPHLYSIYPHG 117
Query: 157 NYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVS 216
+ + + +GS S +A E + P+ EE A+ + ND + N+
Sbjct: 118 STDKLPYVTMGSGSLAAMAVFEDKF--RPDMEEEEAKNLVSEAIAAGIFNDL-GSGSNID 174
Query: 217 IGLVGQN 223
+ ++ +N
Sbjct: 175 LCVISKN 181
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 91.0 bits (225), Expect = 6e-23
Identities = 36/210 (17%), Positives = 81/210 (38%), Gaps = 12/210 (5%)
Query: 40 TVGLKNKTHAVIIALKRAASELAAHQK---KIIVIDDHMGLSFAGLTADARILARFMRME 96
T+ + + ++ RA + + ++I I+ + + AG AD + ++ +
Sbjct: 3 TLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQ 62
Query: 97 CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGY-DDAGPHIYQTCPS 155
C ++ K+ + V I+ N + +Y +G ++ GY GP IY
Sbjct: 63 CRLHELREKERISVAAASKILSNLV----YQYKGAGLSMGTMICGYTRKEGPTIYYVDSD 118
Query: 156 SNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNV 215
+GS A L+ + S+E+ + G R++ D+ + +V
Sbjct: 119 GTRLKGDIFCVGSGQTFAYGVLDSNY--KWDLSVEDALYLGKRSILAAAHRDA-YSGGSV 175
Query: 216 SIGLVGQNQKFKTLDERETGHYLSLIEGEE 245
++ V ++ + + G ++ EE
Sbjct: 176 NLYHVTED-GWIYHGNHDVGELFWKVKEEE 204
>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 204
Score = 89.9 bits (222), Expect = 1e-22
Identities = 35/192 (18%), Positives = 59/192 (30%), Gaps = 12/192 (6%)
Query: 37 GSATVGLKNKTHAVIIALKRAASELAAHQK--KIIVIDDHMGLSFAGLTADARILARFMR 94
G V + K I R S+ + I H+ L GL D L R
Sbjct: 8 GGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGHVFLGITGLATDVTTLNEMFR 67
Query: 95 MECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAG--PHIYQT 152
+ YK + + + PY VG +VAG + P I
Sbjct: 68 YKTNLYKLKEERAIEPETFT----QLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGF 123
Query: 153 CPSSNYYDVKAM-AIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELT 211
+ K G+ S E P E++ + +AL + D+ L+
Sbjct: 124 DLIGCIDEAKDFIVSGTASDQLFGMCESLY--EPNLEPEDLFETISQALLNAADRDA-LS 180
Query: 212 TKNVSIGLVGQN 223
+ ++ ++
Sbjct: 181 GWGAVVYIIKKD 192
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 205
Score = 88.3 bits (218), Expect = 5e-22
Identities = 32/194 (16%), Positives = 66/194 (34%), Gaps = 13/194 (6%)
Query: 34 VKQGSATVGLKNKTHAVIIALKRAASELAAHQK---KIIVIDDHMGLSFAGLTADARILA 90
V G++ + + K ++ A R + + K+ + D + +G AD + +A
Sbjct: 6 VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIA 65
Query: 91 RFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-GPHI 149
++ Y + + + +K G++VAGYDD +
Sbjct: 66 DIVQYHLELYTSQYG------TPSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEV 119
Query: 150 YQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSE 209
Y + + + GS S Y +K S EE V +L + D
Sbjct: 120 YTIPLGGSVHKLPYAIAGSGSTFIYGYCDKN--FRENMSKEETVDFIKHSLSQAIKWDG- 176
Query: 210 LTTKNVSIGLVGQN 223
+ + + ++
Sbjct: 177 SSGGVIRMVVLTAA 190
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 202
Score = 85.9 bits (212), Expect = 3e-21
Identities = 29/204 (14%), Positives = 68/204 (33%), Gaps = 13/204 (6%)
Query: 40 TVGLKNKTHAVIIALKRAAS-ELAAHQ--KKIIVIDDHMGLSFAGLTADARILARFMRME 96
+ ++ V+ A R + A++ K+ I D + +G AD + +A + +
Sbjct: 3 IMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQ 62
Query: 97 CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-GPHIYQTCPS 155
+ + V S+ + G+++AG+D G +Y
Sbjct: 63 LGFHSIELNEPPLVHTAASLFKEMCY-----RYREDLMAGIIIAGWDPQEGGQVYSVPMG 117
Query: 156 SNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNV 215
GS S Y++ + EE ++ AL + D + +
Sbjct: 118 GMMVRQSFAIGGSGSSYIYGYVDATY--REGMTKEECLQFTANALALAMERDG-SSGGVI 174
Query: 216 SIGLVGQNQ-KFKTLDERETGHYL 238
+ + ++ + + L + +
Sbjct: 175 RLAAIAESGVERQVLLGDQIPKFA 198
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 199
Score = 85.7 bits (211), Expect = 4e-21
Identities = 39/205 (19%), Positives = 75/205 (36%), Gaps = 16/205 (7%)
Query: 31 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAH---QKKIIVIDDHMGLSFAGLTADAR 87
ME + +G++ + ++ + + AAS + K+ + + + L G D
Sbjct: 1 MEYL------IGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTV 54
Query: 88 ILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAG 146
A +++ YK + L + + + + PY V LL+AGYD G
Sbjct: 55 QFAEYIQKNVQLYKMRNGYELSPTAAANFT--RRNLADCLRSRTPYHVNLLLAGYDEHEG 112
Query: 147 PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPN 206
P +Y + A G + + L++ P S E V+ + L +
Sbjct: 113 PALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYY--TPTISRERAVELLRKCLEELQKR 170
Query: 207 DSELTTKNVSIGLVGQNQKFKTLDE 231
L S+ ++ +N LD
Sbjct: 171 FI-LNLPTFSVRIIDKN-GIHDLDN 193
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 213
Score = 86.1 bits (212), Expect = 4e-21
Identities = 28/198 (14%), Positives = 61/198 (30%), Gaps = 16/198 (8%)
Query: 37 GSATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADARILARFM 93
G + + + A++ + R + K + D + +G D L + +
Sbjct: 9 GGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKII 68
Query: 94 RMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTC 153
YK+++ + + + PY V ++ G D+ G +
Sbjct: 69 EARLKMYKHSNNKAMTTGAIA----AMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSF 124
Query: 154 P-SSNYYDVKAMAIGSRSQSARTYLEKR-------LADFPEASLEEIVKHGLRALRDTLP 205
+Y A GS S + L+ + + SL+ ++
Sbjct: 125 DPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAE 184
Query: 206 NDSELTTKNVSIGLVGQN 223
D T + I +V +
Sbjct: 185 RDV-YTGDALRICIVTKE 201
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 224
Score = 83.8 bits (206), Expect = 3e-20
Identities = 39/224 (17%), Positives = 70/224 (31%), Gaps = 19/224 (8%)
Query: 40 TVGLKNKTHAVIIALKRAASELAAHQK---KIIVIDDHMGLSFAGLTADARILARFMRME 96
V L K ++ +RA + K+ V D++ AG A L R +E
Sbjct: 3 IVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVE 62
Query: 97 CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA------GPHIY 150
+Y+ L + + + ++ + V L+ GYD I
Sbjct: 63 LEHYEKIEGVPLTFDGKANRLASMVR-GNLGAAMQGLAVVPLLVGYDLDADDESRAGRIV 121
Query: 151 QTCPSSNY--YDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRAL-----RDT 203
A+GS S A++ L+K P++ E ++ + +L D+
Sbjct: 122 SYDVVGGRYEERAGYHAVGSGSLFAKSALKKI--YSPDSDEETALRAAIESLYDAADDDS 179
Query: 204 LPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEERR 247
+LT + + E T I E
Sbjct: 180 ATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELARRIVAERTE 223
>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima
[TaxId: 2336]}
Length = 171
Score = 51.3 bits (122), Expect = 9e-09
Identities = 22/163 (13%), Positives = 44/163 (26%), Gaps = 14/163 (8%)
Query: 40 TVGLKNKTHAVIIALKRAASE---LAAHQKKIIVIDDHMGLSFAGLTADARILARFMRME 96
+ ++ V+ + L + +K+ + + L+ + +
Sbjct: 3 ILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEA 62
Query: 97 CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSS 156
L + V +++ + L+ D I
Sbjct: 63 KLREWGGNLTKAAVELAKDWRTDRV----------LRRLEALLLVADKENIFIISGNGEV 112
Query: 157 NYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRA 199
D A AIGS A K L + S EIV+ +
Sbjct: 113 IQPDDDAAAIGSGGPYALA-AAKALLRNTDLSAREIVEKAMTI 154
>d1ixsa_ a.5.1.1 (A:) DNA helicase RuvA subunit, C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 50
Score = 30.3 bits (68), Expect = 0.021
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 164 MAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALR 201
A+G + AR + LA P+A ++++K L+ LR
Sbjct: 13 AALGFKEAQARAVVLDLLAQNPKARAQDLIKEALKRLR 50
>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 252
Score = 28.4 bits (62), Expect = 0.71
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 15 VTVWSPQGRLHQVEYAMEAVKQ 36
VWS + ++ + Y +
Sbjct: 10 TLVWSEKEQVEKSAYEFSETES 31
>d1thqa_ f.4.1.2 (A:) Outer membrane enzyme PagP {Escherichia coli
[TaxId: 562]}
Length = 157
Score = 26.7 bits (59), Expect = 1.9
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 10/41 (24%)
Query: 125 TQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMA 165
T RY++RP+G G ++ +D+ G N++ + AMA
Sbjct: 37 TDRYNERPWGGGFGLSRWDEKG----------NWHGLYAMA 67
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 26.5 bits (57), Expect = 2.7
Identities = 19/142 (13%), Positives = 38/142 (26%), Gaps = 8/142 (5%)
Query: 64 HQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQV 123
H I V+ MG+S +G +A A +A + L+ + H N
Sbjct: 4 HDHHIYVL---MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDR 60
Query: 124 CTQRYDKRPYGVGLL-----VAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLE 178
+ A Y+ ++ + + + L+
Sbjct: 61 KPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLK 120
Query: 179 KRLADFPEASLEEIVKHGLRAL 200
R F + + L+
Sbjct: 121 ARKGHFFKTQMLVTQFETLQEP 142
>d1vi9a_ c.72.1.5 (A:) Pyridoxamine kinase {Escherichia coli
[TaxId: 562]}
Length = 288
Score = 25.9 bits (56), Expect = 4.5
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 66 KKIIVIDDHMGLSFAGLTADARILARF 92
K I+ I H+ AG +A + R
Sbjct: 3 KNILAIQSHVVYGHAGNSAAEFPMRRL 29
>d1nula_ c.61.1.1 (A:) Xanthine-guanine PRTase (XPRTase)
{Escherichia coli [TaxId: 562]}
Length = 150
Score = 24.6 bits (53), Expect = 8.6
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 5/81 (6%)
Query: 54 LKRAASELAA-----HQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL 108
L+ A +LA+ Q K I+ GL L A + + +Y + ++ L
Sbjct: 10 LQIHARKLASRLMPSEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQREL 69
Query: 109 PVFRLISIVGNKMQVCTQRYD 129
V + G V D
Sbjct: 70 KVLKRAEGDGEGFIVIDDLVD 90
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.392
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 923,051
Number of extensions: 41436
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 42
Length of query: 251
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,268,006
Effective search space: 213025008
Effective search space used: 213025008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)