Query psy1919
Match_columns 737
No_of_seqs 501 out of 3729
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 19:37:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1919.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1919hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1268|consensus 100.0 9E-105 2E-109 858.2 36.9 565 2-726 38-602 (670)
2 COG0449 GlmS Glucosamine 6-pho 100.0 5E-103 1E-107 880.0 43.4 499 2-727 33-532 (597)
3 PTZ00394 glucosamine-fructose- 100.0 5E-88 1.1E-92 789.1 49.7 537 12-726 61-602 (670)
4 PLN02981 glucosamine:fructose- 100.0 5.6E-84 1.2E-88 757.3 47.9 551 2-726 38-610 (680)
5 PTZ00295 glucosamine-fructose- 100.0 2.1E-77 4.6E-82 700.0 46.3 510 2-726 55-574 (640)
6 PRK00331 glucosamine--fructose 100.0 2.3E-75 4.9E-80 679.8 47.6 505 2-726 32-537 (604)
7 TIGR01135 glmS glucosamine--fr 100.0 5.9E-75 1.3E-79 676.7 47.1 508 2-726 31-539 (607)
8 PRK11382 frlB fructoselysine-6 100.0 3.5E-44 7.6E-49 390.8 29.6 273 435-726 8-285 (340)
9 TIGR02815 agaS_fam putative su 100.0 1.5E-42 3.3E-47 382.0 26.9 272 436-726 4-293 (372)
10 COG2222 AgaS Predicted phospho 100.0 3.7E-42 8E-47 371.7 25.4 282 435-736 3-292 (340)
11 KOG1268|consensus 100.0 1.9E-30 4.2E-35 282.0 14.9 391 113-609 230-654 (670)
12 COG1737 RpiR Transcriptional r 99.9 3.4E-26 7.4E-31 243.4 9.6 221 375-607 24-260 (281)
13 COG0449 GlmS Glucosamine 6-pho 99.9 2.2E-25 4.9E-30 252.4 12.6 373 120-609 174-581 (597)
14 PRK15482 transcriptional regul 99.9 5.1E-25 1.1E-29 234.6 11.7 228 375-606 22-264 (285)
15 PRK11302 DNA-binding transcrip 99.9 3.8E-24 8.1E-29 227.1 12.0 227 375-607 22-257 (284)
16 PRK11557 putative DNA-binding 99.9 2.6E-24 5.6E-29 228.1 10.3 221 375-607 18-258 (278)
17 PRK11337 DNA-binding transcrip 99.9 5.8E-24 1.2E-28 227.1 12.7 221 375-607 34-270 (292)
18 PRK06388 amidophosphoribosyltr 99.9 7.2E-23 1.6E-27 230.8 14.4 189 2-401 50-240 (474)
19 PTZ00394 glucosamine-fructose- 99.9 2.4E-22 5.1E-27 236.4 14.5 381 128-609 242-654 (670)
20 PRK07272 amidophosphoribosyltr 99.9 1.8E-22 4E-27 227.9 12.2 89 2-99 42-131 (484)
21 cd00714 GFAT Glutamine amidotr 99.9 3.3E-22 7.2E-27 205.0 12.9 184 2-395 31-214 (215)
22 PRK08341 amidophosphoribosyltr 99.9 6.4E-22 1.4E-26 221.7 13.5 192 2-406 34-226 (442)
23 PRK07631 amidophosphoribosyltr 99.9 5.6E-22 1.2E-26 223.5 11.8 88 2-99 42-130 (475)
24 PRK07349 amidophosphoribosyltr 99.9 7E-22 1.5E-26 223.7 12.0 88 2-99 65-153 (500)
25 PRK06781 amidophosphoribosyltr 99.9 7.6E-22 1.6E-26 222.7 11.5 88 2-99 42-130 (471)
26 PRK14101 bifunctional glucokin 99.9 8.6E-22 1.9E-26 231.6 11.4 220 375-607 362-597 (638)
27 cd05008 SIS_GlmS_GlmD_1 SIS (S 99.9 7.7E-21 1.7E-25 177.5 14.7 125 480-604 1-125 (126)
28 PRK08525 amidophosphoribosyltr 99.9 1.5E-21 3.3E-26 219.6 10.9 88 2-99 32-120 (445)
29 PTZ00295 glucosamine-fructose- 99.8 3.8E-21 8.1E-26 226.2 14.1 157 437-609 464-624 (640)
30 PRK07847 amidophosphoribosyltr 99.8 5.1E-21 1.1E-25 217.2 11.9 88 2-99 55-144 (510)
31 PRK05793 amidophosphoribosyltr 99.8 1.6E-20 3.5E-25 212.5 11.9 88 2-99 47-135 (469)
32 cd01907 GlxB Glutamine amidotr 99.8 4.7E-20 1E-24 193.2 12.0 87 2-99 35-128 (249)
33 PRK09123 amidophosphoribosyltr 99.8 6.2E-20 1.3E-24 207.8 12.9 89 2-99 52-141 (479)
34 PRK08674 bifunctional phosphog 99.8 3.4E-18 7.4E-23 186.6 25.6 241 436-699 3-248 (337)
35 PRK09246 amidophosphoribosyltr 99.8 1.7E-18 3.7E-23 197.6 13.8 88 2-99 32-120 (501)
36 PF01380 SIS: SIS domain SIS d 99.8 4.6E-18 1E-22 159.0 13.3 127 475-601 2-129 (131)
37 PLN02440 amidophosphoribosyltr 99.8 4.6E-18 9.9E-23 193.1 13.3 88 2-99 32-120 (479)
38 TIGR01134 purF amidophosphorib 99.8 5.1E-18 1.1E-22 191.1 13.6 88 2-99 32-119 (442)
39 cd05014 SIS_Kpsf KpsF-like pro 99.7 2.9E-17 6.4E-22 153.8 15.0 121 479-600 1-125 (128)
40 PLN02981 glucosamine:fructose- 99.7 2E-17 4.4E-22 195.4 16.0 386 128-609 239-664 (680)
41 COG0034 PurF Glutamine phospho 99.7 1.1E-17 2.4E-22 182.8 11.0 89 2-99 37-126 (470)
42 cd05005 SIS_PHI Hexulose-6-pho 99.7 1.4E-16 3E-21 158.6 17.9 140 464-608 19-167 (179)
43 cd05710 SIS_1 A subgroup of th 99.7 4.1E-17 8.9E-22 152.4 13.2 100 480-579 1-101 (120)
44 PRK10892 D-arabinose 5-phospha 99.7 4.5E-17 9.8E-22 176.7 15.1 142 467-609 35-181 (326)
45 cd00715 GPATase_N Glutamine am 99.7 3.6E-17 7.8E-22 171.7 13.2 88 2-99 31-119 (252)
46 TIGR03127 RuMP_HxlB 6-phospho 99.7 1.4E-16 3.1E-21 158.4 15.8 138 464-606 16-162 (179)
47 KOG0572|consensus 99.7 5.8E-17 1.3E-21 172.2 12.1 89 2-99 34-123 (474)
48 cd05010 SIS_AgaS_like AgaS-lik 99.7 1.9E-17 4.2E-22 160.9 7.1 73 652-725 1-76 (151)
49 COG0794 GutQ Predicted sugar p 99.7 6.2E-16 1.3E-20 155.2 15.9 140 467-607 27-171 (202)
50 PRK11543 gutQ D-arabinose 5-ph 99.7 5.2E-16 1.1E-20 167.9 16.4 141 467-608 30-175 (321)
51 TIGR02128 G6PI_arch bifunction 99.7 6.1E-15 1.3E-19 159.0 22.4 210 475-706 18-235 (308)
52 cd05013 SIS_RpiR RpiR-like pro 99.7 1.2E-15 2.5E-20 143.2 13.8 134 467-603 2-136 (139)
53 TIGR00393 kpsF KpsF/GutQ famil 99.6 4E-15 8.7E-20 156.7 16.3 130 479-609 1-134 (268)
54 PRK05441 murQ N-acetylmuramic 99.6 2.9E-15 6.3E-20 161.0 15.4 164 436-609 29-217 (299)
55 cd05007 SIS_Etherase N-acetylm 99.6 6.3E-15 1.4E-19 155.2 16.3 165 436-609 16-204 (257)
56 cd05006 SIS_GmhA Phosphoheptos 99.6 3.3E-15 7.2E-20 148.5 12.1 107 473-579 28-155 (177)
57 TIGR00441 gmhA phosphoheptose 99.6 3.8E-15 8.3E-20 145.1 11.1 110 470-580 3-134 (154)
58 cd05009 SIS_GlmS_GlmD_2 SIS (S 99.6 1.5E-14 3.3E-19 138.9 13.5 135 468-609 3-139 (153)
59 TIGR01135 glmS glucosamine--fr 99.6 1.2E-14 2.7E-19 170.4 15.5 137 468-609 453-591 (607)
60 PRK00331 glucosamine--fructose 99.6 1.7E-14 3.6E-19 169.2 16.1 136 468-609 451-588 (604)
61 PRK00414 gmhA phosphoheptose i 99.6 6.9E-15 1.5E-19 148.5 9.7 111 468-579 30-165 (192)
62 cd00352 Gn_AT_II Glutamine ami 99.6 3.2E-14 6.8E-19 144.7 13.5 87 2-99 35-121 (220)
63 TIGR00274 N-acetylmuramic acid 99.6 3.4E-14 7.3E-19 152.1 13.7 141 468-609 47-212 (291)
64 cd05017 SIS_PGI_PMI_1 The memb 99.5 4.8E-14 1E-18 131.4 12.8 112 480-600 1-116 (119)
65 PRK13937 phosphoheptose isomer 99.5 2.9E-14 6.3E-19 143.4 11.8 111 468-579 28-160 (188)
66 PRK12570 N-acetylmuramic acid- 99.5 6.9E-14 1.5E-18 150.1 15.0 164 435-608 24-212 (296)
67 PRK13938 phosphoheptose isomer 99.5 2E-13 4.3E-18 138.3 12.0 110 470-579 37-167 (196)
68 PF13522 GATase_6: Glutamine a 99.5 4.5E-14 9.7E-19 134.4 5.6 57 42-99 9-65 (133)
69 PRK02947 hypothetical protein; 99.5 2.9E-13 6.2E-18 141.9 11.8 109 470-578 32-170 (246)
70 PRK13936 phosphoheptose isomer 99.4 7.8E-13 1.7E-17 134.1 11.5 112 468-580 33-169 (197)
71 PRK10886 DnaA initiator-associ 99.4 1.6E-12 3.6E-17 131.5 13.5 110 470-579 33-166 (196)
72 cd01908 YafJ Glutamine amidotr 99.4 3.8E-13 8.2E-18 141.7 7.0 88 2-99 44-132 (257)
73 cd05009 SIS_GlmS_GlmD_2 SIS (S 99.4 9.2E-13 2E-17 126.5 8.5 89 638-727 2-93 (153)
74 cd00712 AsnB Glutamine amidotr 99.3 2.8E-11 6.2E-16 124.5 12.9 74 21-99 17-91 (220)
75 cd04795 SIS SIS domain. SIS (S 99.3 2.1E-11 4.6E-16 106.0 8.7 79 481-559 1-81 (87)
76 TIGR03442 conserved hypothetic 99.2 2E-11 4.3E-16 128.4 7.0 84 3-99 46-139 (251)
77 COG2103 Predicted sugar phosph 99.2 8.9E-11 1.9E-15 120.9 9.3 139 467-605 49-211 (298)
78 cd00713 GltS Glutamine amidotr 99.1 9.4E-11 2E-15 130.0 8.8 77 10-98 171-247 (413)
79 COG0367 AsnB Asparagine syntha 99.1 1.3E-09 2.9E-14 126.1 17.9 91 1-99 1-92 (542)
80 PTZ00077 asparagine synthetase 99.1 3.6E-10 7.9E-15 131.8 13.2 74 23-99 21-98 (586)
81 cd05015 SIS_PGI_1 Phosphogluco 99.1 4E-10 8.8E-15 110.4 11.2 103 468-571 7-127 (158)
82 COG0279 GmhA Phosphoheptose is 99.1 5.9E-10 1.3E-14 108.0 11.5 109 470-579 33-163 (176)
83 PF00310 GATase_2: Glutamine a 99.1 8.3E-11 1.8E-15 129.4 5.1 77 11-99 166-242 (361)
84 PLN02549 asparagine synthase ( 99.1 5.2E-10 1.1E-14 130.3 11.1 69 23-96 21-90 (578)
85 TIGR03104 trio_amidotrans aspa 99.1 3.6E-10 7.8E-15 132.4 9.5 75 21-99 18-93 (589)
86 TIGR03108 eps_aminotran_1 exos 99.0 5.4E-10 1.2E-14 131.9 9.6 73 22-99 20-93 (628)
87 PRK09431 asnB asparagine synth 99.0 1.5E-09 3.3E-14 126.1 12.8 73 21-99 19-92 (554)
88 TIGR01536 asn_synth_AEB aspara 98.9 1.9E-09 4.1E-14 123.0 8.9 73 23-99 18-91 (467)
89 COG4821 Uncharacterized protei 98.9 9.9E-09 2.2E-13 101.9 10.8 125 469-593 29-193 (243)
90 PF13580 SIS_2: SIS domain; PD 98.9 5.2E-09 1.1E-13 100.2 7.9 91 470-560 27-138 (138)
91 PF13537 GATase_7: Glutamine a 98.8 2E-09 4.4E-14 101.3 2.5 47 51-99 1-47 (125)
92 PF13230 GATase_4: Glutamine a 98.7 4.3E-09 9.3E-14 112.0 2.6 79 3-91 37-118 (271)
93 COG0067 GltB Glutamate synthas 98.7 1.5E-08 3.2E-13 110.7 6.1 78 10-99 172-249 (371)
94 COG0121 Predicted glutamine am 98.3 6.3E-07 1.4E-11 94.2 6.1 77 3-89 37-115 (252)
95 PRK03868 glucose-6-phosphate i 98.3 4.3E-06 9.4E-11 94.0 12.2 95 477-571 57-163 (410)
96 cd03766 Gn_AT_II_novel Gn_AT_I 98.2 1.7E-06 3.6E-11 86.9 6.1 87 1-92 1-90 (181)
97 PRK09533 bifunctional transald 98.2 1.5E-05 3.2E-10 97.0 14.8 104 467-571 442-561 (948)
98 PF01380 SIS: SIS domain SIS d 98.2 2.8E-06 6.1E-11 79.2 6.1 79 646-726 2-80 (131)
99 COG0166 Pgi Glucose-6-phosphat 98.0 0.00022 4.7E-09 80.8 17.8 202 478-695 79-307 (446)
100 PRK14095 pgi glucose-6-phospha 97.8 4.7E-05 1E-09 87.8 8.9 95 477-572 150-258 (533)
101 cd05010 SIS_AgaS_like AgaS-lik 97.8 0.00031 6.6E-09 68.6 12.4 81 481-561 1-88 (151)
102 PRK11382 frlB fructoselysine-6 97.7 0.00028 6E-09 77.7 12.9 93 468-560 198-293 (340)
103 PRK14096 pgi glucose-6-phospha 97.7 0.00018 3.8E-09 83.1 11.1 94 477-571 113-221 (528)
104 PRK00973 glucose-6-phosphate i 97.7 0.00021 4.7E-09 81.1 10.7 104 468-571 61-186 (446)
105 KOG0571|consensus 97.7 0.00015 3.3E-09 79.7 9.1 72 21-96 18-89 (543)
106 cd01909 betaLS_CarA_N Glutamin 97.6 9.1E-05 2E-09 75.5 5.5 27 73-99 49-75 (199)
107 COG2222 AgaS Predicted phospho 97.4 0.0016 3.5E-08 71.6 13.3 93 470-562 193-287 (340)
108 PRK11750 gltB glutamate syntha 97.2 0.00027 5.9E-09 88.7 5.2 78 10-99 182-259 (1485)
109 TIGR02815 agaS_fam putative su 97.1 0.005 1.1E-07 68.7 13.1 128 476-609 212-348 (372)
110 cd05013 SIS_RpiR RpiR-like pro 97.1 0.0014 3E-08 61.2 7.3 87 638-727 2-88 (139)
111 cd04795 SIS SIS domain. SIS (S 96.8 0.0018 3.8E-08 56.0 4.8 74 652-727 1-75 (87)
112 PRK14097 pgi glucose-6-phospha 96.6 0.019 4.1E-07 65.6 12.9 108 470-577 64-201 (448)
113 PF01418 HTH_6: Helix-turn-hel 96.4 2.9E-05 6.4E-10 67.1 -9.1 49 375-426 22-71 (77)
114 cd05008 SIS_GlmS_GlmD_1 SIS (S 96.0 0.018 3.9E-07 53.5 6.6 75 651-728 1-75 (126)
115 PLN02649 glucose-6-phosphate i 95.7 0.02 4.2E-07 67.0 6.8 93 477-571 146-259 (560)
116 cd01910 Wali7 This domain is p 95.6 0.041 8.8E-07 57.1 8.0 29 66-94 63-91 (224)
117 cd05710 SIS_1 A subgroup of th 95.4 0.032 6.9E-07 52.1 6.0 75 651-727 1-75 (120)
118 PF10432 bact-PGI_C: Bacterial 95.4 0.038 8.3E-07 54.3 6.8 85 636-722 5-97 (155)
119 PRK11543 gutQ D-arabinose 5-ph 95.1 0.2 4.2E-06 54.5 12.0 90 637-729 29-119 (321)
120 cd05005 SIS_PHI Hexulose-6-pho 94.7 0.25 5.5E-06 49.1 10.6 85 636-728 20-104 (179)
121 PF00342 PGI: Phosphoglucose i 94.7 0.091 2E-06 60.8 8.3 101 477-577 95-214 (486)
122 PRK00179 pgi glucose-6-phospha 94.6 0.073 1.6E-06 62.3 7.2 92 477-569 144-252 (548)
123 PRK10892 D-arabinose 5-phospha 94.2 0.39 8.3E-06 52.4 11.5 87 638-727 35-122 (326)
124 COG1737 RpiR Transcriptional r 94.0 0.33 7.1E-06 52.2 10.2 90 636-728 117-206 (281)
125 PTZ00430 glucose-6-phosphate i 93.9 0.081 1.7E-06 61.9 5.6 86 477-562 141-248 (552)
126 TIGR03127 RuMP_HxlB 6-phospho 93.4 0.64 1.4E-05 46.1 10.5 85 636-728 17-101 (179)
127 cd05014 SIS_Kpsf KpsF-like pro 92.8 0.42 9.1E-06 44.4 7.6 74 651-727 2-75 (128)
128 PRK11337 DNA-binding transcrip 92.5 0.63 1.4E-05 50.0 9.6 88 637-727 128-215 (292)
129 PRK11302 DNA-binding transcrip 92.5 0.67 1.5E-05 49.3 9.7 88 637-727 116-203 (284)
130 cd05637 SIS_PGI_PMI_2 The memb 92.5 0.57 1.2E-05 44.8 8.2 59 638-698 2-60 (132)
131 cd02767 MopB_ydeP The MopB_yde 92.4 1.9 4E-05 51.2 14.1 56 526-581 164-237 (574)
132 TIGR01701 Fdhalpha-like oxidor 92.1 3.2 7E-05 50.8 16.0 56 526-581 199-273 (743)
133 cd05006 SIS_GmhA Phosphoheptos 90.8 2.3 5E-05 42.2 10.9 89 638-728 22-130 (177)
134 PRK11557 putative DNA-binding 90.6 1.4 3E-05 46.9 9.7 85 637-727 116-203 (278)
135 PRK13937 phosphoheptose isomer 90.6 3 6.5E-05 42.1 11.6 90 637-728 26-135 (188)
136 PF10740 DUF2529: Protein of u 89.2 1.5 3.4E-05 43.7 7.9 103 472-578 32-136 (172)
137 PRK14101 bifunctional glucokin 88.9 1.8 4E-05 51.8 9.9 88 636-726 455-542 (638)
138 PRK15482 transcriptional regul 87.6 4.1 8.9E-05 43.6 10.7 84 637-726 123-209 (285)
139 PRK00414 gmhA phosphoheptose i 87.3 3.2 7E-05 42.1 9.1 86 638-727 33-139 (192)
140 PRK08674 bifunctional phosphog 87.2 2.9 6.3E-05 46.1 9.4 102 619-727 5-106 (337)
141 TIGR01591 Fdh-alpha formate de 87.2 10 0.00022 45.7 14.7 122 526-661 156-289 (671)
142 PRK09939 putative oxidoreducta 86.7 10 0.00022 46.6 14.4 57 525-581 208-283 (759)
143 PTZ00254 40S ribosomal protein 86.3 15 0.00033 39.0 13.6 96 473-577 66-164 (249)
144 PRK13936 phosphoheptose isomer 86.3 5.8 0.00013 40.4 10.4 88 637-726 31-138 (197)
145 PRK02947 hypothetical protein; 85.9 4.9 0.00011 42.5 9.9 89 637-727 28-134 (246)
146 COG0794 GutQ Predicted sugar p 85.2 14 0.0003 38.1 12.3 76 649-726 39-116 (202)
147 TIGR01012 Sa_S2_E_A ribosomal 84.9 19 0.00041 36.9 13.2 94 474-577 58-154 (196)
148 KOG0399|consensus 84.7 0.78 1.7E-05 56.8 3.5 65 11-87 255-319 (2142)
149 cd02753 MopB_Formate-Dh-H Form 84.7 19 0.00042 41.7 15.1 56 525-581 156-213 (512)
150 PRK13938 phosphoheptose isomer 84.5 6.5 0.00014 40.2 9.7 90 637-729 33-143 (196)
151 PF13580 SIS_2: SIS domain; PD 84.5 6.5 0.00014 37.5 9.2 90 637-728 23-132 (138)
152 PRK10886 DnaA initiator-associ 84.3 9.8 0.00021 38.9 10.9 87 638-726 30-136 (196)
153 cd05017 SIS_PGI_PMI_1 The memb 83.1 4 8.7E-05 37.8 6.9 71 651-727 1-71 (119)
154 cd02754 MopB_Nitrate-R-NapA-li 82.8 20 0.00044 42.1 14.3 55 526-581 158-216 (565)
155 PRK04020 rps2P 30S ribosomal p 81.5 36 0.00078 35.2 13.7 92 477-577 66-160 (204)
156 TIGR00393 kpsF KpsF/GutQ famil 79.7 4.4 9.5E-05 42.6 6.7 75 651-728 2-76 (268)
157 TIGR00441 gmhA phosphoheptose 77.7 3.5 7.6E-05 40.2 4.8 85 640-727 2-107 (154)
158 cd02766 MopB_3 The MopB_3 CD i 73.6 22 0.00047 41.4 10.8 55 526-581 158-214 (501)
159 cd02755 MopB_Thiosulfate-R-lik 73.2 63 0.0014 37.1 14.2 56 525-581 156-214 (454)
160 cd00714 GFAT Glutamine amidotr 71.3 2.2 4.7E-05 44.1 1.6 36 121-156 177-214 (215)
161 cd02750 MopB_Nitrate-R-NarG-li 69.3 64 0.0014 37.1 13.2 56 525-581 170-227 (461)
162 TIGR03479 DMSO_red_II_alp DMSO 67.8 1.2E+02 0.0027 38.1 16.2 55 526-581 225-281 (912)
163 TIGR01553 formate-DH-alph form 67.0 68 0.0015 40.9 13.6 55 526-581 222-278 (1009)
164 PRK05441 murQ N-acetylmuramic 66.8 33 0.00073 37.3 9.7 89 637-727 50-159 (299)
165 PF10432 bact-PGI_C: Bacterial 66.7 24 0.00052 34.6 7.8 100 470-570 10-120 (155)
166 COG1029 FwdB Formylmethanofura 66.4 39 0.00086 37.7 9.9 245 466-724 67-362 (429)
167 TIGR02128 G6PI_arch bifunction 65.4 31 0.00067 37.8 9.1 76 645-726 17-93 (308)
168 cd02759 MopB_Acetylene-hydrata 65.4 72 0.0016 36.8 12.7 56 525-581 160-218 (477)
169 cd01425 RPS2 Ribosomal protein 64.4 1.2E+02 0.0026 30.8 12.6 48 524-577 126-173 (193)
170 cd02752 MopB_Formate-Dh-Na-lik 63.7 77 0.0017 38.4 12.7 56 525-581 169-227 (649)
171 cd02769 MopB_DMSOR-BSOR-TMAOR 63.0 66 0.0014 38.5 12.0 106 541-660 197-318 (609)
172 cd02762 MopB_1 The MopB_1 CD i 62.9 51 0.0011 38.7 11.0 103 544-660 183-295 (539)
173 cd00368 Molybdopterin-Binding 62.3 40 0.00086 37.0 9.4 55 525-580 156-212 (374)
174 cd02770 MopB_DmsA-EC This CD ( 62.2 33 0.00072 41.0 9.4 55 526-581 167-227 (617)
175 PRK13532 nitrate reductase cat 61.6 1.6E+02 0.0034 36.8 15.3 55 526-581 207-265 (830)
176 CHL00067 rps2 ribosomal protei 60.5 44 0.00095 35.1 8.8 47 525-577 161-207 (230)
177 PRK15488 thiosulfate reductase 59.3 1.4E+02 0.003 36.7 14.2 56 525-581 196-255 (759)
178 KOG2446|consensus 59.0 16 0.00035 41.5 5.4 74 477-550 149-228 (546)
179 TIGR00509 bisC_fam molybdopter 58.1 77 0.0017 39.0 11.8 104 541-657 193-312 (770)
180 cd02751 MopB_DMSOR-like The Mo 57.6 74 0.0016 38.0 11.2 55 526-581 170-235 (609)
181 cd02765 MopB_4 The MopB_4 CD i 55.8 91 0.002 37.0 11.5 56 525-581 159-216 (567)
182 TIGR01011 rpsB_bact ribosomal 54.4 67 0.0015 33.6 8.9 47 525-577 155-201 (225)
183 PF00289 CPSase_L_chain: Carba 54.3 16 0.00035 33.8 3.9 47 530-578 5-53 (110)
184 PRK05299 rpsB 30S ribosomal pr 53.9 59 0.0013 34.8 8.5 47 525-577 157-203 (258)
185 cd02761 MopB_FmdB-FwdB The Mop 52.0 61 0.0013 36.3 8.9 31 550-581 166-196 (415)
186 cd05007 SIS_Etherase N-acetylm 51.5 75 0.0016 33.8 8.9 28 637-665 37-64 (257)
187 cd01410 SIRT7 SIRT7: Eukaryoti 50.6 37 0.00081 34.9 6.3 50 525-575 155-204 (206)
188 TIGR03129 one_C_dehyd_B formyl 49.5 72 0.0016 35.7 8.9 31 550-581 172-202 (421)
189 TIGR00315 cdhB CO dehydrogenas 49.1 77 0.0017 31.6 7.9 88 470-560 19-134 (162)
190 cd02768 MopB_NADH-Q-OR-NuoG2 M 48.0 3.6E+02 0.0077 29.8 14.1 51 525-578 148-201 (386)
191 cd02763 MopB_2 The MopB_2 CD i 47.8 79 0.0017 38.5 9.4 56 525-581 155-212 (679)
192 cd01413 SIR2_Af2 SIR2_Af2: Arc 46.8 36 0.00079 35.3 5.6 50 525-575 171-220 (222)
193 PF00318 Ribosomal_S2: Ribosom 46.7 89 0.0019 32.2 8.3 47 526-578 144-190 (211)
194 cd02757 MopB_Arsenate-R This C 46.5 2E+02 0.0044 33.7 12.3 56 525-581 162-221 (523)
195 PRK06388 amidophosphoribosyltr 45.4 12 0.00026 43.5 1.8 42 121-162 196-240 (474)
196 cd02764 MopB_PHLH The MopB_PHL 45.1 1.7E+02 0.0036 34.3 11.3 55 526-581 197-261 (524)
197 PF01053 Cys_Met_Meta_PP: Cys/ 44.5 2.3E+02 0.005 32.1 11.9 73 504-577 118-200 (386)
198 COG0052 RpsB Ribosomal protein 43.4 72 0.0016 34.0 7.0 45 527-577 158-202 (252)
199 PRK12570 N-acetylmuramic acid- 43.0 2.7E+02 0.0059 30.3 11.7 28 637-665 46-73 (296)
200 cd05015 SIS_PGI_1 Phosphogluco 42.7 66 0.0014 31.4 6.4 75 638-713 6-88 (158)
201 PRK12311 rpsB 30S ribosomal pr 42.7 1.1E+02 0.0025 33.8 8.8 47 525-577 152-198 (326)
202 cd05637 SIS_PGI_PMI_2 The memb 42.0 1.4E+02 0.003 28.5 8.3 97 472-569 7-110 (132)
203 PTZ00409 Sir2 (Silent Informat 39.1 54 0.0012 35.3 5.5 53 524-577 198-251 (271)
204 COG0279 GmhA Phosphoheptose is 38.6 4.2E+02 0.0091 26.8 11.0 87 639-727 31-137 (176)
205 TIGR01706 NAPA periplasmic nit 38.2 6.2E+02 0.013 31.6 15.3 56 525-581 206-265 (830)
206 cd01409 SIRT4 SIRT4: Eukaryoti 37.9 59 0.0013 34.7 5.6 53 525-578 204-256 (260)
207 PRK14138 NAD-dependent deacety 37.9 45 0.00097 35.2 4.6 53 525-578 178-230 (244)
208 PRK08341 amidophosphoribosyltr 36.9 20 0.00042 41.4 1.9 43 121-164 179-223 (442)
209 cd02771 MopB_NDH-1_NuoG2-N7 Mo 35.8 4E+02 0.0086 30.5 12.4 39 637-676 253-292 (472)
210 cd02760 MopB_Phenylacetyl-CoA- 35.2 4.5E+02 0.0098 32.6 13.3 55 526-581 174-231 (760)
211 PRK08166 NADH dehydrogenase su 34.9 2E+02 0.0043 36.0 10.3 38 638-676 482-520 (847)
212 PF01936 NYN: NYN domain; Int 34.6 34 0.00074 32.0 2.9 47 527-576 97-145 (146)
213 TIGR00288 conserved hypothetic 34.5 97 0.0021 30.9 6.0 49 527-578 107-157 (160)
214 TIGR02166 dmsA_ynfE anaerobic 34.1 1.9E+02 0.0042 35.6 10.0 55 526-581 215-276 (797)
215 cd01907 GlxB Glutamine amidotr 32.9 19 0.00042 38.0 1.0 34 121-154 207-246 (249)
216 PF06283 ThuA: Trehalose utili 32.9 2.6E+02 0.0056 28.5 9.2 67 492-559 20-88 (217)
217 PRK04663 murD UDP-N-acetylmura 29.4 1.9E+02 0.0041 32.9 8.3 34 475-511 4-38 (438)
218 PRK14990 anaerobic dimethyl su 29.2 2.6E+02 0.0057 34.7 10.0 55 526-581 232-293 (814)
219 TIGR00315 cdhB CO dehydrogenas 28.7 2.2E+02 0.0047 28.4 7.5 43 641-684 19-62 (162)
220 PRK07631 amidophosphoribosyltr 28.7 31 0.00066 40.2 1.7 42 121-165 188-235 (475)
221 PLN02509 cystathionine beta-ly 28.5 9.9E+02 0.021 27.8 15.4 43 533-576 228-275 (464)
222 PRK00945 acetyl-CoA decarbonyl 28.4 1.8E+02 0.004 29.2 6.9 91 469-561 25-143 (171)
223 cd06167 LabA_like LabA_like pr 27.5 68 0.0015 30.4 3.6 44 525-571 99-144 (149)
224 PF05198 IF3_N: Translation in 26.4 63 0.0014 28.1 2.8 46 527-572 13-61 (76)
225 COG0731 Fe-S oxidoreductases [ 26.1 1.7E+02 0.0038 32.0 6.7 127 529-675 82-227 (296)
226 PRK02006 murD UDP-N-acetylmura 25.4 1.6E+02 0.0035 34.2 6.9 31 478-512 7-37 (498)
227 PRK06702 O-acetylhomoserine am 25.4 3.7E+02 0.0081 30.9 9.7 54 522-576 143-205 (432)
228 TIGR01973 NuoG NADH-quinone ox 25.1 2.9E+02 0.0063 33.0 9.1 114 467-581 291-420 (603)
229 PF10087 DUF2325: Uncharacteri 24.9 2.6E+02 0.0056 24.9 6.7 81 480-563 1-86 (97)
230 PRK15102 trimethylamine N-oxid 23.9 4.8E+02 0.01 32.5 11.0 32 626-657 330-362 (825)
231 COG0626 MetC Cystathionine bet 23.6 1.1E+03 0.025 26.8 15.0 201 475-687 99-341 (396)
232 PRK07272 amidophosphoribosyltr 23.6 40 0.00086 39.4 1.4 42 121-165 189-237 (484)
233 PF00384 Molybdopterin: Molybd 23.3 3.6E+02 0.0078 30.1 9.0 56 525-581 111-169 (432)
234 TIGR02164 torA trimethylamine- 22.3 5.6E+02 0.012 31.9 11.1 32 626-657 327-359 (822)
235 COG1648 CysG Siroheme synthase 22.1 3.1E+02 0.0067 28.4 7.5 67 479-547 73-141 (210)
236 COG1435 Tdk Thymidine kinase [ 22.0 1.1E+02 0.0024 31.5 4.1 33 533-565 13-45 (201)
237 TIGR00853 pts-lac PTS system, 21.8 2E+02 0.0043 25.9 5.3 75 481-562 7-85 (95)
238 COG4015 Predicted dinucleotide 21.8 2.1E+02 0.0045 28.8 5.7 37 523-559 104-141 (217)
239 COG0290 InfC Translation initi 21.6 1.3E+02 0.0028 30.3 4.3 45 529-573 21-68 (176)
240 PRK07847 amidophosphoribosyltr 20.6 71 0.0015 37.6 2.7 45 121-165 208-255 (510)
241 PRK09004 FMN-binding protein M 20.3 2.9E+02 0.0064 26.6 6.5 30 528-557 5-35 (146)
No 1
>KOG1268|consensus
Probab=100.00 E-value=8.8e-105 Score=858.25 Aligned_cols=565 Identities=59% Similarity=0.940 Sum_probs=523.5
Q ss_pred ccEEEEcCCCceEEEEccCCchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeCCCCCEEEEEc
Q psy1919 2 KCIALDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHN 81 (737)
Q Consensus 2 ~gIa~~~~~~~~i~~~K~~G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~~~~~~avvhN 81 (737)
.|||+++++-..+.++|+.|+|+.|.+.+... ..++......|+||+||||||||.|++.|+|||.+++.+.|.||||
T Consensus 38 aGiaId~~~~~s~~~~k~~GkVkaL~e~i~~q--~~~l~~~f~sH~gIAHTRWATHGvPs~~NsHP~rSd~~n~FvVVHN 115 (670)
T KOG1268|consen 38 AGIAIDGDELESLLIYKQTGKVSSLKEEINNQ--NLNLDEKFISHCGIAHTRWATHGVPSEVNCHPHRSDPSNEFVVVHN 115 (670)
T ss_pred CceeecCCcccchhhhcccCceeehhHHHhhc--CcccceeeeeeeeeeeeehhhcCCCCccCCCCCcCCCCCcEEEEEc
Confidence 59999987777899999999999999998764 4666666789999999999999999999999999888899999999
Q ss_pred ceecchHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCccccccccccceEEeccCcccccccceEEEeecCcccccccCc
Q psy1919 82 GIVTNYKELKAFLTNKDHRPHGRSETMPMLPRNDSTSEFQPLEDKQVEYFFASDASAVIEHTNRVIFLERFDRGNCNCQS 161 (737)
Q Consensus 82 G~I~N~~~Lr~~L~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~l~~~~~~~~~~~~ 161 (737)
|+|+||++||+.|+++|| -|-||||+ |
T Consensus 116 GIITNyk~lK~~L~~kG~-------------------------------~FESdTDT------E---------------- 142 (670)
T KOG1268|consen 116 GIITNFKELKALLEKKGY-------------------------------VFESDTDT------E---------------- 142 (670)
T ss_pred CeeccHHHHHHHHHhcCc-------------------------------eeecccch------H----------------
Confidence 999999999999999999 99999999 9
Q ss_pred eeeeCcchhhhhcccchHhHHHHHHHhhcCCCCCCCCCCccccccccCCcceeeecCcceeeecccCCCCCCCcceeeee
Q psy1919 162 LTVPKSKKERRQDRNKSAVLRTNLWDILLGLSSSWAGIEPRGLIEGTDDDVAAVKDGSLSIHRLRRSLDDPHGREITILK 241 (737)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~l~i~~~~~~~~~~~~r~~~~~~ 241 (737)
+++| |..+.||.... ..+|...++. ++++
T Consensus 143 -ciaK--------------L~~~~~D~~~~------~~~F~~lv~~------------------------------v~k~ 171 (670)
T KOG1268|consen 143 -CIAK--------------LYKHIYDTSPE------DLDFHVLVEL------------------------------VLKE 171 (670)
T ss_pred -HHHH--------------HHHHHHhhCCC------cccHHHHHHH------------------------------HHHH
Confidence 9998 99999997542 4566666665 6777
Q ss_pred hhhhhhcccCceEEEEEeeccCchhhhHhhcCccccCCCceEEecccccccccccccccCCCcccccCcccccccccccc
Q psy1919 242 LEIQEIMKGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKRKIRPKCIVVKLCPNMVDRRGEEVNLLCRGSVR 321 (737)
Q Consensus 242 ~~~~~~~kg~y~~~m~keI~eqp~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (737)
+ +|.|+...... .-|..++.+++| ||+++|++.+.+++.+ .++|+|+.-..
T Consensus 172 l------EGaFalvfkS~--hfP~e~Va~Rrg-------SPlliGvKs~~kls~d--------------~~~V~y~~~~~ 222 (670)
T KOG1268|consen 172 L------EGAFGLLFKSS--HFPGEVVAARKG-------SPLLIGVKSKTKLSVD--------------FFPVEYGDTQE 222 (670)
T ss_pred h------hhHHHHHHHhh--cCCcceeeeccC-------Ccceeeeccccccccc--------------ceeeeccccce
Confidence 8 99999999998 889999999999 9999999988788766 56666665211
Q ss_pred cccccccccccccccccCCCCCCCCCCCCCCCCCCcccCCccCCCceEEEecChHHHHhccCceEEeccCcEEEEECCce
Q psy1919 322 FQSTSIDELKCVWTQHHRPHGRSETMPMLPRNDSTSEFQPLEDKQVEYFFASDASAVIEHTNRVIFLEDDDVAAVKDGSL 401 (737)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sd~~ail~~t~~vi~l~~~elA~~~~s~~ 401 (737)
.+. ..-.+.|+.+.+.+.+++|+|||+|||+.|+++||++|++|+|+|+|.+.+++.
T Consensus 223 -------------------~~~----~~~~~~d~~~~~~~~~~~~vEff~aSDasa~IEhT~rV~flEDddia~v~dG~l 279 (670)
T KOG1268|consen 223 -------------------VSY----LKLNKTDTKASLHFLAGSPVEFFTASDASALIEHTKRVLFLEDDDIAHVSDGEL 279 (670)
T ss_pred -------------------ecc----cccCCcccccccccccCCceEEEEecCcchhheecceeEEeccCcEEEEecCce
Confidence 000 001145666778888888999999999999999999999999999999999999
Q ss_pred EEEEccccCCCCCCcccEEeehhHHHHhcCCchHHHHHHHHcChHHHHHHHhccccccccccccccccchhHHHcCCCeE
Q psy1919 402 SIHRLRRSLDDPHGREITILKLEIQEIMKGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRL 481 (737)
Q Consensus 402 tI~r~ckk~g~~~~~~~~~lk~~~~~~~k~~y~~~M~kEI~EQP~~l~~~l~~~i~~~~~~i~l~~l~~~~~~L~~akrI 481 (737)
+|.|+.+..|. ..|.++++++++++++||+|+|||.|||+|||+++.+++.+|+++..+++.+++++..+..++.++|+
T Consensus 280 sihr~~~~~~~-~~R~i~tlemEl~qImKG~yd~yMqKEI~EQpeS~~ntMRGRv~~~~~~V~LGGlk~~l~~irr~rRl 358 (670)
T KOG1268|consen 280 TIHRGKRTAGP-STRSIQTLEMELQQIMKGNYDYYMQKEIYEQPESLVNTMRGRVSFPLNKVVLGGLKDYLPEIRRCRRL 358 (670)
T ss_pred EEEeeccccCC-cchHHHHHHHHHHHHcCCchHhhhhhHHhhCchHHHHhccceeccccceeeecCCcchhhhhhhcccc
Confidence 99999888777 67999999999999999999999999999999999999999999888888999999999999999999
Q ss_pred EEEecchhHHHHHHHHHHHHHhcCCcEEEeccccccccCCCCCCCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecC
Q psy1919 482 MMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNT 561 (737)
Q Consensus 482 ~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~~~~~~l~~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~ 561 (737)
+++|||+|||+|...+..|+++..+|+.++.+++|+++..++..+|+++++||||||+||+-|++.++++||-+|+|||.
T Consensus 359 i~iacgtSyhs~~A~R~ilEEL~eiPV~vElAsDflDR~~pifRdDvc~FvSqSGETaDtllaL~Yc~~~gAl~vGvtNt 438 (670)
T KOG1268|consen 359 IMVACGTSYHSALATRPILEELSEIPVSVELASDFLDRNTPIFRDDVCFFVSQSGETADTLLALRYCKERGALTVGVTNT 438 (670)
T ss_pred EEEEecchHHHHHHHHHHHHHHhcCCeeeehhhhhHhcCCCceeccEEEEEecCCchHHHHHHHHHHHhcCceEEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccceEEEcCCCCCccccchhHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Q psy1919 562 VGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTRRNEIIKGLKVIHEQIREVLQMDSEVQQ 641 (737)
Q Consensus 562 ~~S~La~~AD~~L~~~ag~E~~vasTksftsql~~L~lLal~la~~~~~~~~~~~~~~~~l~~l~~~i~~vl~~~~~~~~ 641 (737)
.+|+++|.++|.+++++|||+++|+||+||+|+.+|.|+|++++.++.+.++++.+++++|..+|++++++|+.++.+++
T Consensus 439 vGSsIsR~thCGvHiNaGpEigvAsTKaYTSQ~i~lvm~aL~~s~d~is~~~RR~eIi~gL~~l~~~ikevL~l~~~i~~ 518 (670)
T KOG1268|consen 439 VGSSISRETHCGVHINAGPEIGVASTKAYTSQYIALVMFALWMSEDRVSKQERRKEIIDGLKDLPSQIKEVLELDPKIKD 518 (670)
T ss_pred cCcccccccccceeccCCCccceeechHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999999999999999999999999999999999998888889999999999999999999999999999
Q ss_pred HHHHHcCCCeEEEEecCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCeEEEEEcCCchhHHHHHHHHH
Q psy1919 642 LAKEMYEQKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQ 721 (737)
Q Consensus 642 lA~~l~~~~~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPialid~~t~Vi~l~~~d~~~~k~~~~l~e 721 (737)
+|.++++.+.+.++|| |++|++|+|||||+||++|+|+||.-+||++|||++++|++.|+++|++.|..+.|..+.++|
T Consensus 519 la~~l~~~~slLi~GR-Gy~~at~lEGAlKiKEisymHsEgilagElkHgplAlvd~~~pi~~i~~~D~~~~K~~na~qQ 597 (670)
T KOG1268|consen 519 LAKELKDHKSLLIMGR-GYNFATALEGALKIKEISYMHSEGILAGELKHGPLALVDENLPIIMIATRDAVYPKCQNAIQQ 597 (670)
T ss_pred HHHHHhccceEEEecc-cccHHHHhhhhhhhheeeehhhchhhhcccccCceeEecCCCCEEEEEecCcccHHHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcc
Q psy1919 722 VIFTI 726 (737)
Q Consensus 722 i~aR~ 726 (737)
+.||+
T Consensus 598 v~aRk 602 (670)
T KOG1268|consen 598 VTARK 602 (670)
T ss_pred HHhcC
Confidence 99986
No 2
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.5e-103 Score=879.97 Aligned_cols=499 Identities=37% Similarity=0.625 Sum_probs=454.5
Q ss_pred ccEEEEcCCCceEEEEccCCchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeCCCCCEEEEEc
Q psy1919 2 KCIALDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHN 81 (737)
Q Consensus 2 ~gIa~~~~~~~~i~~~K~~G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~~~~~~avvhN 81 (737)
-|||+.. ++++.++|..|+|++| +.... .. ++.+++|||||||||||.|++.|||||. + ++++||||
T Consensus 33 aGiav~~--~~~l~~~k~~Gkv~~l-~~~~~------~~-~~~~~~gIgHTRWATHG~P~~~NAHPh~-~--~~~avVHN 99 (597)
T COG0449 33 AGIAVVG--DGSLNVRKQVGKISNL-EELLN------KE-PLIGGVGIAHTRWATHGGPTRANAHPHS-D--GEFAVVHN 99 (597)
T ss_pred ccEEEEe--CCeEEEEEccCCHHHH-Hhhhc------cc-ccCCceeeeeccccCCCCCCcCCCCCCC-C--CCEEEEeC
Confidence 4999984 3789999999999999 33211 11 4779999999999999999999999995 3 78999999
Q ss_pred ceecchHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCccccccccccceEEeccCcccccccceEEEeecCcccccccCc
Q psy1919 82 GIVTNYKELKAFLTNKDHRPHGRSETMPMLPRNDSTSEFQPLEDKQVEYFFASDASAVIEHTNRVIFLERFDRGNCNCQS 161 (737)
Q Consensus 82 G~I~N~~~Lr~~L~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~l~~~~~~~~~~~~ 161 (737)
|+|+||.+||++|+++|| .|.||||+ |
T Consensus 100 GIIeN~~eLr~eL~~~G~-------------------------------~F~S~TDT------E---------------- 126 (597)
T COG0449 100 GIIENFAELKEELEAKGY-------------------------------VFKSDTDT------E---------------- 126 (597)
T ss_pred chhhCHHHHHHHHHhcCC-------------------------------EEecCCch------H----------------
Confidence 999999999999999999 99999999 9
Q ss_pred eeeeCcchhhhhcccchHhHHHHHHHhhcCCCCCCCCCCccccccccCCcceeeecCcceeeecccCCCCCCCcceeeee
Q psy1919 162 LTVPKSKKERRQDRNKSAVLRTNLWDILLGLSSSWAGIEPRGLIEGTDDDVAAVKDGSLSIHRLRRSLDDPHGREITILK 241 (737)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~l~i~~~~~~~~~~~~r~~~~~~ 241 (737)
+|+| |++++|+.. +.+++.. +..+
T Consensus 127 -Vi~h--------------Li~~~~~~~-----------~~~a~~~------------------------------~l~~ 150 (597)
T COG0449 127 -VIAH--------------LLEEIYDTS-----------LLEAVKK------------------------------VLKR 150 (597)
T ss_pred -HHHH--------------HHHHHHHhH-----------HHHHHHH------------------------------HHHH
Confidence 9999 999999752 2344443 6667
Q ss_pred hhhhhhcccCceEEEEEeeccCchhhhHhhcCccccCCCceEEecccccccccccccccCCCcccccCcccccccccccc
Q psy1919 242 LEIQEIMKGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKRKIRPKCIVVKLCPNMVDRRGEEVNLLCRGSVR 321 (737)
Q Consensus 242 ~~~~~~~kg~y~~~m~keI~eqp~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (737)
+ +|.|+..++.. +.|+.|+.+++| ||+++|+++
T Consensus 151 l------~Gsyal~~~~~--~~p~~i~~ar~~-------sPL~iG~g~-------------------------------- 183 (597)
T COG0449 151 L------EGSYALLCTHS--DFPDELVAARKG-------SPLVIGVGE-------------------------------- 183 (597)
T ss_pred h------cceeEEEEEec--CCCCeEEEEcCC-------CCeEEEecC--------------------------------
Confidence 7 99999999999 999999999999 999999972
Q ss_pred cccccccccccccccccCCCCCCCCCCCCCCCCCCcccCCccCCCceEEEecChHHHHhccCceEEeccCcEEEEECCce
Q psy1919 322 FQSTSIDELKCVWTQHHRPHGRSETMPMLPRNDSTSEFQPLEDKQVEYFFASDASAVIEHTNRVIFLEDDDVAAVKDGSL 401 (737)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sd~~ail~~t~~vi~l~~~elA~~~~s~~ 401 (737)
+|+|+|||++|++++|+++++|+|+|++.++.+++
T Consensus 184 ---------------------------------------------~e~f~aSD~~a~l~~t~~~~~l~dgd~~~~~~~~v 218 (597)
T COG0449 184 ---------------------------------------------GENFLASDVSALLNFTRRFVYLEEGDIAKLTTDGV 218 (597)
T ss_pred ---------------------------------------------CcceEecChhhhhhhhceEEEeCCCCEEEEECCcE
Confidence 68999999999999999999999999999999888
Q ss_pred EEEEccccCCCCCCcccEEeehhHHHHhcCCchHHHHHHHHcChHHHHHHHhccccccccccccccccchhHHHcCCCeE
Q psy1919 402 SIHRLRRSLDDPHGREITILKLEIQEIMKGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRL 481 (737)
Q Consensus 402 tI~r~ckk~g~~~~~~~~~lk~~~~~~~k~~y~~~M~kEI~EQP~~l~~~l~~~i~~~~~~i~l~~l~~~~~~L~~akrI 481 (737)
+ ++ .|. +.|..+.+.|+...++||+|+|||+|||+|||+++++++..+++.... .. .-.+.+.++++|
T Consensus 219 ~-~~----~g~-v~r~~~~~~~~~~~a~Kg~y~hfMlKEI~EQP~~i~~tl~~~~~~~~~--~~----~~~~~~~~~~rI 286 (597)
T COG0449 219 S-IN----DGN-VLRDVPVIEWDLCAAEKGGFRHFMLKEIYEQPEALRNTLQGRLDELVQ--NE----LDLDILREVDRI 286 (597)
T ss_pred E-Ee----cCe-eeeeeEEeccChhHHhcCCCCchHHHHHHhhHHHHHHHHHhhhhhhhh--hh----hchhhhcccceE
Confidence 7 44 355 789999999999999999999999999999999999999987653110 01 111156799999
Q ss_pred EEEecchhHHHHHHHHHHHHHhcCCcEEEeccccccccCCCCCCCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecC
Q psy1919 482 MMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNT 561 (737)
Q Consensus 482 ~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~~~~~~l~~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~ 561 (737)
+|+|||||||||+.++|+|++++++|+.++.++||.|+.+.+.+++++|+|||||||.||+.|++.||++|+++++|||.
T Consensus 287 ~IvAcGTSYhAglv~ky~~E~la~ipv~Ve~aSEfry~~~~~~~~~L~I~ISQSGETaDTl~ALr~ak~~G~~tlaItNv 366 (597)
T COG0449 287 IIVACGTSYHAGLVAKYFFERLAKIPVEVEEASEFRYREPALNPNTLVIAISQSGETADTLAALRLAKEQGAKTLAITNV 366 (597)
T ss_pred EEEECcHHHHHHHHHHHHHHHHhCCCeEEEeechhhhhccCCCCCcEEEEEccCcccHHHHHHHHHHHHcCCCEEEEEec
Confidence 99999999999999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred CCCccccccceEEEcCCCCCccccchhHHHHHHHHHHHHHHHHhhhhcch-HHHHHHHHHHHHHHHHHHHHHhcccHHHH
Q psy1919 562 VGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISL-QTRRNEIIKGLKVIHEQIREVLQMDSEVQ 640 (737)
Q Consensus 562 ~~S~La~~AD~~L~~~ag~E~~vasTksftsql~~L~lLal~la~~~~~~-~~~~~~~~~~l~~l~~~i~~vl~~~~~~~ 640 (737)
++|+|+|.+|++|++.+|||+++++||+||+|+++|++|++.+++.++.. .++.+++.++|..+|+.+++++..++.++
T Consensus 367 ~gSti~Resd~~l~~~AGpEigVAsTKaftaQl~~L~lLal~~a~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~~~~i~ 446 (597)
T COG0449 367 PGSTIARESDHTLLIRAGPEIGVASTKAFTAQVLALYLLALYLAKQRGTISEEEERSLIKELQKLPNHIPKVLAAEEKIK 446 (597)
T ss_pred CCChhhcccceEEEeccCCceeeecchhHHHHHHHHHHHHHHHhHhhCccchhHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999999999999999999999999999999888755 45678889999999999999999888999
Q ss_pred HHHHHHcCCCeEEEEecCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCeEEEEEcCCchhHHHHHHHH
Q psy1919 641 QLAKEMYEQKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALL 720 (737)
Q Consensus 641 ~lA~~l~~~~~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPialid~~t~Vi~l~~~d~~~~k~~~~l~ 720 (737)
++++.|.+.++++|+|| |.+||+|+||||||||++|+|||||++|||||||++++|+++|||+|.|++..++|+.+|++
T Consensus 447 ~~a~~l~~~~~~~~lGR-G~~ypvAlEgALKlKEIsYIHAEgy~aGElKHGpiALid~~~pVi~i~p~~~~~ek~~sni~ 525 (597)
T COG0449 447 ELAKRLADAKDFFFLGR-GVLYPVALEGALKLKEISYIHAEGYAAGELKHGPIALIDENTPVIAIAPKPDLFEKTKSNIQ 525 (597)
T ss_pred HHHHHhcccCCEEEEcC-CCCcHhHhhhhhhhhhheeeccccccchhhccCceEEEcCCCcEEEEeCcchHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999998999999999
Q ss_pred Hhhhccc
Q psy1919 721 QVIFTIF 727 (737)
Q Consensus 721 ei~aR~~ 727 (737)
|+++||.
T Consensus 526 Ev~aRg~ 532 (597)
T COG0449 526 EVRARGG 532 (597)
T ss_pred HHHcCCC
Confidence 9999983
No 3
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=100.00 E-value=5e-88 Score=789.11 Aligned_cols=537 Identities=44% Similarity=0.674 Sum_probs=451.2
Q ss_pred ceEEEEccCCchhhHHHHHHhhhhcccc---cccCCCcEEEeEeeccccCCCCCCCCCCeeeCCCCCEEEEEcceecchH
Q psy1919 12 VDIAIVKKSGKVSALEDEIQTRLKELNV---EESSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHNGIVTNYK 88 (737)
Q Consensus 12 ~~i~~~K~~G~v~~l~~~~~~~~~~~~l---~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~~~~~~avvhNG~I~N~~ 88 (737)
+++.++|+.|+|++|.+.+-.......+ ...+.|++|||||||||||.++..|+|||. +++++++|||||+||||.
T Consensus 61 ~~~~~~k~~G~v~~l~~~~~~~~~~~~~~~~~~~~~g~~~igH~R~at~g~~~~~n~qP~~-~~~~~i~vvhNG~I~N~~ 139 (670)
T PTZ00394 61 PRPCVVRSVGNISQLREKVFSEAVAATLPPMDATTSHHVGIAHTRWATHGGVCERNCHPQQ-SNNGEFTIVHNGIVTNYM 139 (670)
T ss_pred CcEEEEECCccHHHHHHHHhcchhhhhccccccCCCCCEEEEEeeceecCCCCcCCCCCcC-CCCCCEEEEECeeEecHH
Confidence 4699999999999987655211001111 113578999999999999999999999996 567889999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCCCCCCCCccccccccccceEEeccCcccccccceEEEeecCcccccccCceeeeCcc
Q psy1919 89 ELKAFLTNKDHRPHGRSETMPMLPRNDSTSEFQPLEDKQVEYFFASDASAVIEHTNRVIFLERFDRGNCNCQSLTVPKSK 168 (737)
Q Consensus 89 ~Lr~~L~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~ 168 (737)
+||++|+++|+ .|.|++|+ | +|++
T Consensus 140 eLr~~L~~~g~-------------------------------~f~s~tDt------E-----------------vi~~-- 163 (670)
T PTZ00394 140 TLKELLKEEGY-------------------------------HFSSDTDT------E-----------------VISV-- 163 (670)
T ss_pred HHHHHHHHcCC-------------------------------EecCCChH------H-----------------HHHH--
Confidence 99999999999 99999999 8 7777
Q ss_pred hhhhhcccchHhHHHHHHHhhcCCCCCCCCCCccccccccCCcceeeecCcceeeecccCCCCCCCcceeeeehhhhhhc
Q psy1919 169 KERRQDRNKSAVLRTNLWDILLGLSSSWAGIEPRGLIEGTDDDVAAVKDGSLSIHRLRRSLDDPHGREITILKLEIQEIM 248 (737)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~l~i~~~~~~~~~~~~r~~~~~~~~~~~~~ 248 (737)
|+++.|...+ ..++.+++.. ...++
T Consensus 164 ------------li~~~~~~~g-------~~~~~~a~~~------------------------------~~~~l------ 188 (670)
T PTZ00394 164 ------------LSEYLYTRKG-------IHNFADLALE------------------------------VSRMV------ 188 (670)
T ss_pred ------------HHHHHHHhcC-------CCCHHHHHHH------------------------------HHHHc------
Confidence 8877775321 1134455444 55667
Q ss_pred ccCceEEEEEeeccCchhhhHhhcCccccCCCceEEecccccccccccccccCCCcccccCccccccccccccccccccc
Q psy1919 249 KGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKRKIRPKCIVVKLCPNMVDRRGEEVNLLCRGSVRFQSTSID 328 (737)
Q Consensus 249 kg~y~~~m~keI~eqp~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (737)
+|.|+..++.. ..|+.++.++++ +|+++|..+... ...+.. +.
T Consensus 189 ~G~ya~~i~~~--~~~~~l~~~Rd~-------~PL~iG~~~~~~-~~~~~~--------------~~------------- 231 (670)
T PTZ00394 189 EGSYALLVKSV--YFPGQLAASRKG-------SPLMVGIRRTDD-RGCVMK--------------LQ------------- 231 (670)
T ss_pred cCceEEEEEec--CCCCEEEEEEcC-------CceEEEeccccc-cccccc--------------cc-------------
Confidence 99999999987 789999999999 899999974211 111000 00
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCCcccCCccCCCceEEEecChHHHHhccCceEEeccCcEEEEECCceEEEEccc
Q psy1919 329 ELKCVWTQHHRPHGRSETMPMLPRNDSTSEFQPLEDKQVEYFFASDASAVIEHTNRVIFLEDDDVAAVKDGSLSIHRLRR 408 (737)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sd~~ail~~t~~vi~l~~~elA~~~~s~~tI~r~ck 408 (737)
.. +.+....++++|||||++||++||++|++|+|+|++.++.+.++|++...
T Consensus 232 --------~~--------------------~~~~~~~~~~~~~aSd~~a~~~~t~~~~~l~dg~~~~~~~~~~~~~~~~~ 283 (670)
T PTZ00394 232 --------TY--------------------DLTDLSGPLEVFFSSDVNSFAEYTREVVFLEDGDIAHYCDGALRFYNAAE 283 (670)
T ss_pred --------cc--------------------cccccCCCCcEEEEeChHHHHHhhceEEEecCCeEEEEECCEEEEEeCCC
Confidence 00 00001123689999999999999999999999999999988899998531
Q ss_pred cCCCCCCcccEEeehhHHHHhcCCchHHHHHHHHcChHHHHHHHhccccccccccccccc-cchhHHHcCCCeEEEEecc
Q psy1919 409 SLDDPHGREITILKLEIQEIMKGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGI-KDYIPEIRRCRRLMMIGCG 487 (737)
Q Consensus 409 k~g~~~~~~~~~lk~~~~~~~k~~y~~~M~kEI~EQP~~l~~~l~~~i~~~~~~i~l~~l-~~~~~~L~~akrI~ivG~G 487 (737)
..+....+..+.++|+.+.++|++|+|||+|||+|||+++++++..++......+.++.+ ...++.+.++++|+|+|||
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~k~~y~hfMlkEI~EQP~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~a~rI~ivG~G 363 (670)
T PTZ00394 284 RQRSIVKREVQHLDAKPEGLSKGNYPHFMLKEIYEQPESVISSMHGRIDFSSGTVQLSGFTQQSIRAILTSRRILFIACG 363 (670)
T ss_pred CcccccccceEEEeCCHhHhhcCCCchHHHHHHHhhHHHHHHHHHhhhhhccCcccchhhHHHHHHHHhCCCEEEEEEec
Confidence 111156788999999999999999999999999999999999998765422222323333 2345678899999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCcEEEeccccccccCCCCCCCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccc
Q psy1919 488 TSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSIS 567 (737)
Q Consensus 488 sS~~aA~~~~~~l~~~~gi~v~~~~ase~~~~~~~l~~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La 567 (737)
+|+++|+.++++|+++.++++.+..+++|.+..+.+.++|++|+|||||+|++|+++++.||++|++||+|||+++|+|+
T Consensus 364 tS~~aa~~ak~~~~kl~~i~v~v~~asef~~~~~~~~~~dlvI~ISqSGeT~dtl~Al~~Ak~~Ga~tIaITn~~~S~La 443 (670)
T PTZ00394 364 TSLNSCLAVRPLFEELVPLPISVENASDFLDRRPRIQRDDVCFFVSQSGETADTLMALQLCKEAGAMCVGITNVVGSSIS 443 (670)
T ss_pred hHHHHHHHHHHHHHHhcCCCEEEeccchhhhhccCCCCCCEEEEEECCcCcHHHHHHHHHHHHCCCcEEEEECCCCCHHH
Confidence 99999999999999999999999999999877777889999999999999999999999999999999999999999999
Q ss_pred cccceEEEcCCCCCccccchhHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHH
Q psy1919 568 RESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTRRNEIIKGLKVIHEQIREVLQM-DSEVQQLAKEM 646 (737)
Q Consensus 568 ~~AD~~L~~~ag~E~~vasTksftsql~~L~lLal~la~~~~~~~~~~~~~~~~l~~l~~~i~~vl~~-~~~~~~lA~~l 646 (737)
+.||++|++++|+|.++++||+|++|+++++++++.++..++...+.++++++.|..+|+.+++++++ +++++++|+++
T Consensus 444 ~~AD~~l~~~ag~E~~va~Tks~tsql~~l~llal~la~~~~~~~~~~~~l~~~l~~lp~~i~~~l~~~~~~~~~~a~~l 523 (670)
T PTZ00394 444 RLTHYAIHLNAGVEVGVASTKAYTSQVVVLTLVALLLSSDSVRLQERRNEIIRGLAELPAAISECLKITHDPVKALAARL 523 (670)
T ss_pred HhcCeEEEecccccccccccHhHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHh
Confidence 99999999999999999999999999999999999988765443344677888999999999999975 67899999999
Q ss_pred cCCCeEEEEecCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCeEEEEEcCCchhHHHHHHHHHhhhcc
Q psy1919 647 YEQKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIFTI 726 (737)
Q Consensus 647 ~~~~~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPialid~~t~Vi~l~~~d~~~~k~~~~l~ei~aR~ 726 (737)
.+.++++|+|+ |++||+|+||||||||++|+||++|+++||+|||++++++++|||+|.++|+.++++.++++++++|+
T Consensus 524 ~~~~~~~~lGr-G~~y~~A~EgALKlkE~syi~ae~y~~~EfkHGP~alid~~~pVi~l~~~~~~~e~~~~~~~evk~~g 602 (670)
T PTZ00394 524 KESSSILVLGR-GYDLATAMEAALKVKELSYVHTEGIHSGELKHGPLALIDETSPVLAMCTHDKHFGLSKSAVQQVKARG 602 (670)
T ss_pred hCCCcEEEEeC-CCCHHHHHHHHHHHHHHHHHHhCcCChhhccCCcHHHhcCCceEEEEEcCCchHHHHHHHHHHHHHcC
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999999986
No 4
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=100.00 E-value=5.6e-84 Score=757.33 Aligned_cols=551 Identities=47% Similarity=0.766 Sum_probs=454.1
Q ss_pred ccEEEEcCCCc-----eEEEEccCCchhhHHHHHHhhhhccccc--ccCCCcEEEeEeeccccCCCCCCCCCCeeeCCCC
Q psy1919 2 KCIALDAADGV-----DIAIVKKSGKVSALEDEIQTRLKELNVE--ESSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQ 74 (737)
Q Consensus 2 ~gIa~~~~~~~-----~i~~~K~~G~v~~l~~~~~~~~~~~~l~--~~~~~~~~IgHtR~at~g~~~~~nahP~~~~~~~ 74 (737)
-|||+.. ++ .+.++|+.|+|++|.+.+....+..++. ..+.|++|||||||||||.++..|+|||.....+
T Consensus 38 aGia~~~--~~~~~~~~~~~~k~~G~~~~l~~~~~~~~~~~~l~~~~~~~g~~~IGH~R~at~g~~~~~n~qP~~~~~~~ 115 (680)
T PLN02981 38 AGIAIDN--DPSLESSSPLVFREEGKIESLVRSVYEEVAETDLNLDLVFENHAGIAHTRWATHGPPAPRNSHPQSSGPGN 115 (680)
T ss_pred ceEEEEc--CCcccccceEEEEcCCCHHHHHHHHhhhccccccccccCCCCcEEEEEcccccCCCCCcCCCCCcccCCCC
Confidence 4999973 33 4899999999999987764210112221 1367899999999999999889999999754457
Q ss_pred CEEEEEcceecchHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCccccccccccceEEeccCcccccccceEEEeecCcc
Q psy1919 75 TFCVVHNGIVTNYKELKAFLTNKDHRPHGRSETMPMLPRNDSTSEFQPLEDKQVEYFFASDASAVIEHTNRVIFLERFDR 154 (737)
Q Consensus 75 ~~avvhNG~I~N~~~Lr~~L~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~l~~~~~ 154 (737)
.++|||||+|+||.+||++|+++|| .|.|++|+ |
T Consensus 116 ~ialvhNG~I~N~~eLr~~L~~~G~-------------------------------~f~s~tDt------E--------- 149 (680)
T PLN02981 116 EFLVVHNGIITNYEVLKETLLRHGF-------------------------------TFESDTDT------E--------- 149 (680)
T ss_pred cEEEEECceEecHHHHHHHHHhCCC-------------------------------eeccCCHH------H---------
Confidence 8999999999999999999999999 99999999 8
Q ss_pred cccccCceeeeCcchhhhhcccchHhHHHHHHHhhcCCCCCCCC-CCccccccccCCcceeeecCcceeeecccCCCCCC
Q psy1919 155 GNCNCQSLTVPKSKKERRQDRNKSAVLRTNLWDILLGLSSSWAG-IEPRGLIEGTDDDVAAVKDGSLSIHRLRRSLDDPH 233 (737)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~~~~~~l~i~~~~~~~~~~~ 233 (737)
+|++ |+.+.|+..+. ..+ .++.+++..
T Consensus 150 --------vi~~--------------li~~~~~~~~~----~~~~~~~~~a~~~-------------------------- 177 (680)
T PLN02981 150 --------VIPK--------------LAKFVFDKLNE----EEGDVTFSQVVME-------------------------- 177 (680)
T ss_pred --------HHHH--------------HHHHHHHhccc----ccCCCCHHHHHHH--------------------------
Confidence 7777 77776654221 001 134444443
Q ss_pred CcceeeeehhhhhhcccCceEEEEEeeccCchhhhHhhcCccccCCCceEEecccccccccccccccCCCcccccCcccc
Q psy1919 234 GREITILKLEIQEIMKGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKRKIRPKCIVVKLCPNMVDRRGEEVN 313 (737)
Q Consensus 234 ~r~~~~~~~~~~~~~kg~y~~~m~keI~eqp~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (737)
...++ +|.|+..|+.. ..|+.++.+++| +|+++|..+.. ...+++.
T Consensus 178 ----~~~~l------~G~ya~~i~~~--~~~~~i~~~r~~-------~PL~iG~~~~~-~~~~~~~-------------- 223 (680)
T PLN02981 178 ----VMRQL------EGAYALIFKSP--HYPNELVACKRG-------SPLLLGVKELP-EEKNSSA-------------- 223 (680)
T ss_pred ----HHHhc------cCccceEEEec--CCCCeEEEEecC-------CceEEEecCcc-ccccccc--------------
Confidence 55667 99999999988 889999999998 89999986210 0000000
Q ss_pred cccccccccccccccccccccccccCCCCCCCCCCCCCCCCCCcccCCc-cCCCceEEEecChHHHHhccCceEEeccCc
Q psy1919 314 LLCRGSVRFQSTSIDELKCVWTQHHRPHGRSETMPMLPRNDSTSEFQPL-EDKQVEYFFASDASAVIEHTNRVIFLEDDD 392 (737)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sd~~ail~~t~~vi~l~~~e 392 (737)
+.. + . .+... .+.++++|||||..||..++++|.+++++|
T Consensus 224 ~~~--~-----~--------------------------------~~~~~~~~~~~~~~~aSe~~al~~~~~~~~~l~~ge 264 (680)
T PLN02981 224 VFT--S-----E--------------------------------GFLTKNRDKPKEFFLASDASAVVEHTKRVLVIEDNE 264 (680)
T ss_pred ccc--c-----c--------------------------------cccccccccCCcEEEEeCHHHHHHhcCEEEEECCCe
Confidence 000 0 0 00000 012257999999999999999999999999
Q ss_pred EEEEECCceEEEEccc--cCC-------CCCCcccEEeehhHHHHhcCCchHHHHHHHHcChHHHHHHHhccccccc---
Q psy1919 393 VAAVKDGSLSIHRLRR--SLD-------DPHGREITILKLEIQEIMKGNYSYFMQKEIFEQPESVVNTMRGRINFET--- 460 (737)
Q Consensus 393 lA~~~~s~~tI~r~ck--k~g-------~~~~~~~~~lk~~~~~~~k~~y~~~M~kEI~EQP~~l~~~l~~~i~~~~--- 460 (737)
++.++.+++.++++.. ..| ....+.++.+.|+.+.+.|++|+|||+|||+|||++|++++..++....
T Consensus 265 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~y~~~m~kEI~EQP~~l~~~l~~r~~~~~~~~ 344 (680)
T PLN02981 265 VVHLKDGGVGIYKFENEKGRGGGGLSRPASVERALSTLEMEVEQIMKGNYDHYMQKEIHEQPESLTTTMRGRLIRGGSGK 344 (680)
T ss_pred EEEEECCeEEEEeCCCCccccccccccccccccceEEeeCCHHHhccCCCCchHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 9999998899988642 000 3456888999999999999999999999999999999999977642111
Q ss_pred -cccccccccchhHHHcCCCeEEEEecchhHHHHHHHHHHHHHhcCCcEEEeccccccccCCCCCCCCeEEEEcCCCCcH
Q psy1919 461 -NSVILGGIKDYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETA 539 (737)
Q Consensus 461 -~~i~l~~l~~~~~~L~~akrI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~~~~~~l~~~dlvI~ISqSGeT~ 539 (737)
....++.+.++++.|.++++|+|+|||+|+++|+.+++++++++++++.+..+++|.+......+++++|+|||||+|+
T Consensus 345 ~~~~~l~~l~~~~~~l~~~~~I~~~G~GsS~~aa~~a~~~l~kl~~i~v~~~~~sef~~~~~~~~~~~lvI~ISqSGeT~ 424 (680)
T PLN02981 345 AKRVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSGVPVTMELASDLLDRQGPIYREDTAVFVSQSGETA 424 (680)
T ss_pred ccccchHHHHHHHHHHhcCCEEEEEEecHHHHHHHHHHHHHHHHhCCCEEEecchHHHhccccCCCCCeEEEEeCCcCCH
Confidence 0233455667777889999999999999999999999999999999999988999977655567789999999999999
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCCCCccccchhHHHHHHHHHHHHHHHHhhhhcchHHHHHHHH
Q psy1919 540 DSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTRRNEII 619 (737)
Q Consensus 540 etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E~~vasTksftsql~~L~lLal~la~~~~~~~~~~~~~~ 619 (737)
+++++++.||++|++||+|||+++|+|++.||++|++++|+|.++++|++|++|+++++++++.++..+....+.+++++
T Consensus 425 eti~Al~~Ak~~Ga~~IaITn~~~S~La~~ad~~i~~~~g~E~~~a~Tksfts~~~~l~llal~l~~~~~~~~~~~~~~~ 504 (680)
T PLN02981 425 DTLRALEYAKENGALCVGITNTVGSAISRGTHCGVHINAGAEIGVASTKAYTSQIVAMTMLALALGEDSISSRSRREAII 504 (680)
T ss_pred HHHHHHHHHHHCCCcEEEEECCCCChhHhccCeeEEecCcccccccccccHHHHHHHHHHHHHHHHhhhcChhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998764432233346788
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHcCCCeEEEEecCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCC
Q psy1919 620 KGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNS 699 (737)
Q Consensus 620 ~~l~~l~~~i~~vl~~~~~~~~lA~~l~~~~~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPialid~~ 699 (737)
++|..+|+.++++++..++++++|+++.+.++++|+|+ |++||+|+||||||+|++|+||++|+++||+|||+++++++
T Consensus 505 ~~l~~lp~~l~~vl~~~~~~~~~a~~l~~~~~~~~lG~-G~~yg~A~EgALKlkE~s~i~a~gy~~~Ef~HGP~ali~~~ 583 (680)
T PLN02981 505 DGLFDLPNKVREVLKLDQEMKELAELLIDEQSLLVFGR-GYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDET 583 (680)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHhhCCCcEEEEeC-CCCHHHHHHHHHHHHHHHHhhhccEEhhhcccChHHhccCC
Confidence 89999999999999766789999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCchhHHHHHHHHHhhhcc
Q psy1919 700 MPVIMILTRDPVYVKCMNALLQVIFTI 726 (737)
Q Consensus 700 t~Vi~l~~~d~~~~k~~~~l~ei~aR~ 726 (737)
+|||+|.++|+.++++.++++++++|+
T Consensus 584 t~vi~l~~~~~~~~~~~~~~~el~~~g 610 (680)
T PLN02981 584 LPIIVIATRDACFSKQQSVIQQLRARK 610 (680)
T ss_pred ceEEEEEcCCchHHHHHHHHHHHHHcC
Confidence 999999999998899999999998876
No 5
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=100.00 E-value=2.1e-77 Score=700.05 Aligned_cols=510 Identities=34% Similarity=0.512 Sum_probs=432.6
Q ss_pred ccEEEEcCCCceEEEEc--cCCchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeCCCCCEEEE
Q psy1919 2 KCIALDAADGVDIAIVK--KSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVV 79 (737)
Q Consensus 2 ~gIa~~~~~~~~i~~~K--~~G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~~~~~~avv 79 (737)
-||++.. +++.+.++| +.|+|+++++.+.... .-. .+.++++||||||||+|.++..|+|||. ++.+++++|
T Consensus 55 ~Gia~~~-~~~~~~~~k~~g~g~v~~~~~~~~~~~---~~~-~~~~~~~igH~R~at~g~~~~~n~qP~~-~~~~~~~~v 128 (640)
T PTZ00295 55 CGISTIS-SGGELKTTKYASDGTTSDSIEILKEKL---LDS-HKNSTIGIAHTRWATHGGKTDENAHPHC-DYKKRIALV 128 (640)
T ss_pred eEEEEEe-CCCcEEEEEeCCCCchHHHHHHHHHHh---hcC-CCCCcEEEEEeccccCCCCCcCCCCCCC-CCCCCEEEE
Confidence 4899973 335688888 6778888887764421 001 3578999999999999998899999996 456789999
Q ss_pred EcceecchHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCccccccccccceEEeccCcccccccceEEEeecCccccccc
Q psy1919 80 HNGIVTNYKELKAFLTNKDHRPHGRSETMPMLPRNDSTSEFQPLEDKQVEYFFASDASAVIEHTNRVIFLERFDRGNCNC 159 (737)
Q Consensus 80 hNG~I~N~~~Lr~~L~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~l~~~~~~~~~~ 159 (737)
|||+|+||.+||++|+++|+ .|.|++|+ |
T Consensus 129 hNG~I~N~~~Lr~~L~~~g~-------------------------------~f~s~tDs------E-------------- 157 (640)
T PTZ00295 129 HNGTIENYVELKSELIAKGI-------------------------------KFRSETDS------E-------------- 157 (640)
T ss_pred EEEEEcCHHHHHHHHHHCCC-------------------------------cccCCChH------H--------------
Confidence 99999999999999999999 88999999 8
Q ss_pred CceeeeCcchhhhhcccchHhHHHHHHHhhcCCCCCCCCCCccccccccCCcceeeecCcceeeecccCCCCCCCcceee
Q psy1919 160 QSLTVPKSKKERRQDRNKSAVLRTNLWDILLGLSSSWAGIEPRGLIEGTDDDVAAVKDGSLSIHRLRRSLDDPHGREITI 239 (737)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~l~i~~~~~~~~~~~~r~~~~ 239 (737)
+|++ |+.+.++. +.++.+++.. ..
T Consensus 158 ---vi~~--------------li~~~~~~---------g~~~~~a~~~------------------------------~~ 181 (640)
T PTZ00295 158 ---VIAN--------------LIGLELDQ---------GEDFQEAVKS------------------------------AI 181 (640)
T ss_pred ---HHHH--------------HHHHHHhc---------CCCHHHHHHH------------------------------HH
Confidence 6665 65554432 1133344443 45
Q ss_pred eehhhhhhcccCceEEEEEeeccCchhhhHhhcCccccCCCceEEecccccccccccccccCCCcccccCcccccccccc
Q psy1919 240 LKLEIQEIMKGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKRKIRPKCIVVKLCPNMVDRRGEEVNLLCRGS 319 (737)
Q Consensus 240 ~~~~~~~~~kg~y~~~m~keI~eqp~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (737)
..+ +|.|+..+..+ .+|+.+..++++ +|+..|..+
T Consensus 182 ~~l------~G~~a~~~~~~--~~~~~l~~~Rd~-------~PL~~g~~~------------------------------ 216 (640)
T PTZ00295 182 SRL------QGTWGLCIIHK--DNPDSLIVARNG-------SPLLVGIGD------------------------------ 216 (640)
T ss_pred HHh------hhhceEEEEEe--CCCCEEEEEECC-------CceEEEEcC------------------------------
Confidence 556 99999999887 779999988877 788888641
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCCCCCCCcccCCccCCCceEEEecChHHHHhccCceEEeccCcEEEEECC
Q psy1919 320 VRFQSTSIDELKCVWTQHHRPHGRSETMPMLPRNDSTSEFQPLEDKQVEYFFASDASAVIEHTNRVIFLEDDDVAAVKDG 399 (737)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sd~~ail~~t~~vi~l~~~elA~~~~s 399 (737)
+++|||||..||..++.+++.+.+||++.++.+
T Consensus 217 -----------------------------------------------~~~~~aSE~~al~~~~~~~~~l~pGei~~i~~~ 249 (640)
T PTZ00295 217 -----------------------------------------------DSIYVASEPSAFAKYTNEYISLKDGEIAELSLE 249 (640)
T ss_pred -----------------------------------------------ceEEEEechHHHHhhCcEEEEeCCCeEEEEECC
Confidence 479999999999999999999999999999988
Q ss_pred ceEEEEccccCCCCCCcccEEeehhHHHHhcCCchHHHHHHHHcChHHHHHHHh--ccccccccccccccccchhHHHcC
Q psy1919 400 SLSIHRLRRSLDDPHGREITILKLEIQEIMKGNYSYFMQKEIFEQPESVVNTMR--GRINFETNSVILGGIKDYIPEIRR 477 (737)
Q Consensus 400 ~~tI~r~ckk~g~~~~~~~~~lk~~~~~~~k~~y~~~M~kEI~EQP~~l~~~l~--~~i~~~~~~i~l~~l~~~~~~L~~ 477 (737)
++.+++ ..+.++.+.|+...+.|++|+|||+|||+|||+++++++. .++......+.++.++++++.+.+
T Consensus 250 ~~~~~~--------~~~~~~~~~~~~~~~~k~~~~~~m~kEI~EqP~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 321 (640)
T PTZ00295 250 NVNDLY--------TQRRVEKIPEEVIEKSPEPYPHWTLKEIFEQPIALSRALNNGGRLSGYNNRVKLGGLDQYLEELLN 321 (640)
T ss_pred eEEEEe--------cCCceEEecCChhhhcCCCchHHHHHHHHHHHHHHHHHhhcccceeccCCccchhhhHHHHHHHhc
Confidence 888777 2357789999999999999999999999999999999994 322211122333445566677899
Q ss_pred CCeEEEEecchhHHHHHHHHHHHHHhcCC-cEEEeccccccccCCCCCCCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEE
Q psy1919 478 CRRLMMIGCGTSYHSAVATRQLLEELTEL-PVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIV 556 (737)
Q Consensus 478 akrI~ivG~GsS~~aA~~~~~~l~~~~gi-~v~~~~ase~~~~~~~l~~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tI 556 (737)
+++|+|+|||+|+++|+.++++|++++++ ++.+..++++.+.. ...++|++|+|||||+|++++++++.||++|++||
T Consensus 322 ~~~I~i~g~GsS~~aa~~~~~~l~~~~~~~~v~~~~~s~~~~~~-~~~~~~lvI~ISqSGeT~d~i~al~~ak~~Ga~~I 400 (640)
T PTZ00295 322 IKNLILVGCGTSYYAALFAASIMQKLKCFNTVQVIDASELTLYR-LPDEDAGVIFISQSGETLDVVRALNLADELNLPKI 400 (640)
T ss_pred CCEEEEEEeehHHHHHHHHHHHHHHhCCCCceEEechHHhhhhc-cCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCCEE
Confidence 99999999999999999999999999887 47677778876544 34688999999999999999999999999999999
Q ss_pred EEecCCCCccccccceEEEcCCCCCccccchhHHHHHHHHHHHHHHHHhhhhcc--hHHHHHHHHHHHHHHHHHHHHHhc
Q psy1919 557 GVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRIS--LQTRRNEIIKGLKVIHEQIREVLQ 634 (737)
Q Consensus 557 aITn~~~S~La~~AD~~L~~~ag~E~~vasTksftsql~~L~lLal~la~~~~~--~~~~~~~~~~~l~~l~~~i~~vl~ 634 (737)
+|||+++|+|+++||++|++.+|+|.++++||+|++|+++++++++.++..++. ..+++++++++|..+|+.++++++
T Consensus 401 aITn~~~S~La~~ad~~l~~~ag~E~~v~~Tk~~ts~l~~l~lla~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~l~ 480 (640)
T PTZ00295 401 SVVNTVGSLIARSTDCGVYLNAGREVAVASTKAFTSQVTVLSLIALWFAQNKEYSCSNYKCSSLINSLHRLPTYIGMTLK 480 (640)
T ss_pred EEECCCCChhHHhcCEEEEeCCcCcccccccccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888776541 234567889999999999999997
Q ss_pred -ccHHHHHHHHHHcCCCeEEEEecCCCCHHHHHHHHHHHHHhcccccccccccccccccccccc--CCCeEEEEEcCCch
Q psy1919 635 -MDSEVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALID--NSMPVIMILTRDPV 711 (737)
Q Consensus 635 -~~~~~~~lA~~l~~~~~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPialid--~~t~Vi~l~~~d~~ 711 (737)
.+++++++++.+.+.++++|+|+ |.+|++|+||||||+|++|+||++|+++||+|||+++++ +++|||+|.+.+..
T Consensus 481 ~~~~~~~~~a~~l~~a~~i~~lGr-G~~~~iA~E~ALKLkEi~~i~ae~~~~~E~~HGp~ali~~~~~~~VI~i~~~~~~ 559 (640)
T PTZ00295 481 SCEEQCKRIAEKLKNAKSMFILGK-GLGYPIALEGALKIKEITYIHAEGFSGGALKHGPFALIDKEKNTPVILIILDDEH 559 (640)
T ss_pred HhHHHHHHHHHHHhCCCcEEEEEC-CCCHHHHHHHHHHHHHHhhhhhhhcChHHhhhhHHHHhcCCCCCeEEEEEcCCcc
Confidence 56789999999999999999999 999999999999999999999999999999999999999 88999999999987
Q ss_pred hHHHHHHHHHhhhcc
Q psy1919 712 YVKCMNALLQVIFTI 726 (737)
Q Consensus 712 ~~k~~~~l~ei~aR~ 726 (737)
.++++++++++++|+
T Consensus 560 ~~~~~~~~~~lk~rg 574 (640)
T PTZ00295 560 KELMINAAEQVKARG 574 (640)
T ss_pred HHHHHHHHHHHHHcC
Confidence 788888898888876
No 6
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=100.00 E-value=2.3e-75 Score=679.77 Aligned_cols=505 Identities=38% Similarity=0.631 Sum_probs=437.0
Q ss_pred ccEEEEcCCCceEEEEccCCchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeCCCCCEEEEEc
Q psy1919 2 KCIALDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHN 81 (737)
Q Consensus 2 ~gIa~~~~~~~~i~~~K~~G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~~~~~~avvhN 81 (737)
-||++. +++++.++|+.|+++++++... +. .+.++++||||||||+|.++..|+|||. ++.+++++|||
T Consensus 32 ~Gi~~~--~~~~~~~~k~~g~~~~~~~~~~-------~~-~~~g~~~igH~R~at~g~~~~~n~qP~~-~~~~~~~~vhN 100 (604)
T PRK00331 32 AGIAVL--DDGGLEVRKAVGKVANLEAKLE-------EE-PLPGTTGIGHTRWATHGKPTERNAHPHT-DCSGRIAVVHN 100 (604)
T ss_pred ceEEEE--eCCEEEEEECCcCHHHHHhhhc-------cc-cCCCcEEEEEEecCCCCCCccccCCccc-cCCCCEEEEEe
Confidence 388887 3467999999999999986431 12 4678999999999999988889999995 45688999999
Q ss_pred ceecchHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCccccccccccceEEeccCcccccccceEEEeecCcccccccCc
Q psy1919 82 GIVTNYKELKAFLTNKDHRPHGRSETMPMLPRNDSTSEFQPLEDKQVEYFFASDASAVIEHTNRVIFLERFDRGNCNCQS 161 (737)
Q Consensus 82 G~I~N~~~Lr~~L~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~l~~~~~~~~~~~~ 161 (737)
|+|+||.+||++|.++|+ .|.|++|+ |
T Consensus 101 G~I~N~~~Lr~~l~~~g~-------------------------------~~~~~sDs------E---------------- 127 (604)
T PRK00331 101 GIIENYAELKEELLAKGH-------------------------------VFKSETDT------E---------------- 127 (604)
T ss_pred EEEcCHHHHHHHHHhCCC-------------------------------cccCCCHH------H----------------
Confidence 999999999999999999 88999999 8
Q ss_pred eeeeCcchhhhhcccchHhHHHHHHHhhcCCCCCCCCCCccccccccCCcceeeecCcceeeecccCCCCCCCcceeeee
Q psy1919 162 LTVPKSKKERRQDRNKSAVLRTNLWDILLGLSSSWAGIEPRGLIEGTDDDVAAVKDGSLSIHRLRRSLDDPHGREITILK 241 (737)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~l~i~~~~~~~~~~~~r~~~~~~ 241 (737)
++++ |+.+.++. +.++.+++.. ...+
T Consensus 128 -vi~~--------------l~~~~~~~---------g~~~~~a~~~------------------------------~~~~ 153 (604)
T PRK00331 128 -VIAH--------------LIEEELKE---------GGDLLEAVRK------------------------------ALKR 153 (604)
T ss_pred -HHHH--------------HHHHHHhh---------CCCHHHHHHH------------------------------HHHh
Confidence 5554 55554432 1234444443 4556
Q ss_pred hhhhhhcccCceEEEEEeeccCchhhhHhhcCccccCCCceEEecccccccccccccccCCCcccccCcccccccccccc
Q psy1919 242 LEIQEIMKGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKRKIRPKCIVVKLCPNMVDRRGEEVNLLCRGSVR 321 (737)
Q Consensus 242 ~~~~~~~kg~y~~~m~keI~eqp~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (737)
+ +|.|+..+... +.|+.+..++++ +|+..|..+
T Consensus 154 l------~G~~a~~~~d~--~~~~~l~~~Rd~-------~PL~~g~~~-------------------------------- 186 (604)
T PRK00331 154 L------EGAYALAVIDK--DEPDTIVAARNG-------SPLVIGLGE-------------------------------- 186 (604)
T ss_pred c------cCeeEEEEEec--CCCCEEEEEECC-------CceEEEEcC--------------------------------
Confidence 6 99999999887 778899988776 788887641
Q ss_pred cccccccccccccccccCCCCCCCCCCCCCCCCCCcccCCccCCCceEEEecChHHHHhccCceEEeccCcEEEEECCce
Q psy1919 322 FQSTSIDELKCVWTQHHRPHGRSETMPMLPRNDSTSEFQPLEDKQVEYFFASDASAVIEHTNRVIFLEDDDVAAVKDGSL 401 (737)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sd~~ail~~t~~vi~l~~~elA~~~~s~~ 401 (737)
+.+||||+..+|+.+++++..++++|++.++.+++
T Consensus 187 ---------------------------------------------~~~~~aSE~~al~~~~~~~~~l~pg~~~~i~~~~~ 221 (604)
T PRK00331 187 ---------------------------------------------GENFLASDALALLPYTRRVIYLEDGEIAVLTRDGV 221 (604)
T ss_pred ---------------------------------------------CeEEEEECHHHHHHhcCEEEEECCCeEEEEECCeE
Confidence 47999999999999999999999999999998888
Q ss_pred EEEEccccCCCCCCcccEEeehhHHHHhcCCchHHHHHHHHcChHHHHHHHhccccccccccccccccchhHHHcCCCeE
Q psy1919 402 SIHRLRRSLDDPHGREITILKLEIQEIMKGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRL 481 (737)
Q Consensus 402 tI~r~ckk~g~~~~~~~~~lk~~~~~~~k~~y~~~M~kEI~EQP~~l~~~l~~~i~~~~~~i~l~~l~~~~~~L~~akrI 481 (737)
.++++. |....+..+.++++...+.|++|+|+|++||+|||+++++++..+... .+.+...++.+.++++|
T Consensus 222 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~m~~eI~eqP~~l~~~~~~~~~~------~~~~~~~~~~l~~a~~I 292 (604)
T PRK00331 222 EIFDFD---GNPVEREVYTVDWDASAAEKGGYRHFMLKEIYEQPEAIRDTLEGRLDE------LGEGELADEDLKKIDRI 292 (604)
T ss_pred EEEeCC---CCcccCceEEEeCCHHHhccCCCchHHHHHHHHHHHHHHHHHHhhhcc------ccchhhhHHHHhcCCEE
Confidence 888852 444467888999999999999999999999999999999999754321 12344456778899999
Q ss_pred EEEecchhHHHHHHHHHHHHHhcCCcEEEeccccccccCCCCCCCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecC
Q psy1919 482 MMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNT 561 (737)
Q Consensus 482 ~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~~~~~~l~~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~ 561 (737)
+|+|||+|+++|+.++++++++.++++.+..++++.+....+.++|++|+|||||+|++++++++.||++|++||+||++
T Consensus 293 ~~~G~GsS~~aa~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvI~iS~SG~T~e~i~a~~~ak~~ga~~IaIT~~ 372 (604)
T PRK00331 293 YIVACGTSYHAGLVAKYLIESLAGIPVEVEIASEFRYRDPVLSPKTLVIAISQSGETADTLAALRLAKELGAKTLAICNV 372 (604)
T ss_pred EEEEeecHHHHHHHHHHHHHHHcCCCEEEEehhhhhccCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHCCCCEEEEECC
Confidence 99999999999999999999998999888878888665566788999999999999999999999999999999999999
Q ss_pred CCCccccccceEEEcCCCCCccccchhHHHHHHHHHHHHHHHHhhhhcch-HHHHHHHHHHHHHHHHHHHHHhcccHHHH
Q psy1919 562 VGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISL-QTRRNEIIKGLKVIHEQIREVLQMDSEVQ 640 (737)
Q Consensus 562 ~~S~La~~AD~~L~~~ag~E~~vasTksftsql~~L~lLal~la~~~~~~-~~~~~~~~~~l~~l~~~i~~vl~~~~~~~ 640 (737)
++|||++.||++|++.+++|.++++|++|+++++++++|++.++..++.. .+.++++.++|+.+|+.++.+++.+++++
T Consensus 373 ~~S~La~~aD~~l~~~~~~e~~~~~tks~~s~l~~l~lL~~~~~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 452 (604)
T PRK00331 373 PGSTIARESDAVLYTHAGPEIGVASTKAFTAQLAVLYLLALALAKARGTLSAEEEADLVHELRELPALIEQVLDLKEQIE 452 (604)
T ss_pred CCChhHHhcCcEEEecCcCccchhhhHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 99999999999999999999999999999999999999999887765533 34567888999999999999997677899
Q ss_pred HHHHHHcCCCeEEEEecCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCeEEEEEcCCchhHHHHHHHH
Q psy1919 641 QLAKEMYEQKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALL 720 (737)
Q Consensus 641 ~lA~~l~~~~~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPialid~~t~Vi~l~~~d~~~~k~~~~l~ 720 (737)
++|+++.+.+.++++|+ |++||+|+||||||+|++|+||++|+++||+|||++++++++|||+|.++|...+++.++++
T Consensus 453 ~~a~~~~~~~~~~~lG~-G~~~~~A~E~aLKl~E~~~i~a~~~~~~Ef~HGP~~~i~~~~~vi~l~~~~~~~~~~~~~~~ 531 (604)
T PRK00331 453 ELAEDFADARNALFLGR-GVDYPVALEGALKLKEISYIHAEGYAAGELKHGPIALIDEGMPVVAIAPNDELYEKTKSNIQ 531 (604)
T ss_pred HHHHHHhCCCcEEEEeC-CCCHHHHHHHHHHHHHHhhhcccccchhhhccCcHhhhcCCceEEEEEcCchHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999988889999999
Q ss_pred Hhhhcc
Q psy1919 721 QVIFTI 726 (737)
Q Consensus 721 ei~aR~ 726 (737)
++++||
T Consensus 532 ~~~~~g 537 (604)
T PRK00331 532 EVKARG 537 (604)
T ss_pred HHHhCC
Confidence 998664
No 7
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=100.00 E-value=5.9e-75 Score=676.68 Aligned_cols=508 Identities=37% Similarity=0.626 Sum_probs=433.9
Q ss_pred ccEEEEcCCCceEEEEccCCchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeCCCCCEEEEEc
Q psy1919 2 KCIALDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHN 81 (737)
Q Consensus 2 ~gIa~~~~~~~~i~~~K~~G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~~~~~~avvhN 81 (737)
-||++. +++++.++|+.|+|.++++... +. .+.++++||||||||+|.++..|+|||. .+++++++|||
T Consensus 31 ~Gi~~~--~~~~~~~~k~~g~~~~~~~~~~-------~~-~~~~~~~igH~R~at~g~~~~~n~qP~~-~~~~~~~~vhN 99 (607)
T TIGR01135 31 AGIAVV--DEGKLFVRKAVGKVQELANKLG-------EK-PLPGGVGIGHTRWATHGKPTEENAHPHT-DEGGRIAVVHN 99 (607)
T ss_pred ceEEEE--eCCEEEEEECCcCHHHHHhhhh-------cc-cCCccEEEEEeeccCCCCCCccCCCCcC-cCCCCEEEEEe
Confidence 378876 3457999999999999986432 12 4678999999999999988889999995 55678999999
Q ss_pred ceecchHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCccccccccccceEEeccCcccccccceEEEeecCcccccccCc
Q psy1919 82 GIVTNYKELKAFLTNKDHRPHGRSETMPMLPRNDSTSEFQPLEDKQVEYFFASDASAVIEHTNRVIFLERFDRGNCNCQS 161 (737)
Q Consensus 82 G~I~N~~~Lr~~L~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~l~~~~~~~~~~~~ 161 (737)
|+|+||.+||++|..+|+ .|.|++|+ |
T Consensus 100 G~I~N~~~Lr~~L~~~g~-------------------------------~~~~~tDs------E---------------- 126 (607)
T TIGR01135 100 GIIENYAELREELEARGH-------------------------------VFVSDTDT------E---------------- 126 (607)
T ss_pred cccCCHHHHHHHHHhCCC-------------------------------ccccCCHH------H----------------
Confidence 999999999999999999 89999999 8
Q ss_pred eeeeCcchhhhhcccchHhHHHHHHHhhcCCCCCCCCCCccccccccCCcceeeecCcceeeecccCCCCCCCcceeeee
Q psy1919 162 LTVPKSKKERRQDRNKSAVLRTNLWDILLGLSSSWAGIEPRGLIEGTDDDVAAVKDGSLSIHRLRRSLDDPHGREITILK 241 (737)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~l~i~~~~~~~~~~~~r~~~~~~ 241 (737)
++++ |+...++. +-++.+++.. ...+
T Consensus 127 -vi~~--------------l~~~~~~~---------~~~~~~ai~~------------------------------~~~~ 152 (607)
T TIGR01135 127 -VIAH--------------LIEEYLRE---------GGDLLEAVQK------------------------------ALKQ 152 (607)
T ss_pred -HHHH--------------HHHHHHhc---------CCCHHHHHHH------------------------------HHHH
Confidence 5554 55554431 1134444443 4556
Q ss_pred hhhhhhcccCceEEEEEeeccCchhhhHhhcCccccCCCceEEecccccccccccccccCCCcccccCcccccccccccc
Q psy1919 242 LEIQEIMKGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKRKIRPKCIVVKLCPNMVDRRGEEVNLLCRGSVR 321 (737)
Q Consensus 242 ~~~~~~~kg~y~~~m~keI~eqp~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (737)
+ +|.|+..+... ..|+.+..++.+ +|+..|..+
T Consensus 153 l------~G~~a~~i~~~--~~~~~l~~~Rd~-------~PL~~~~~~-------------------------------- 185 (607)
T TIGR01135 153 L------RGAYALAVLHA--DHPETLVAARSG-------SPLIVGLGD-------------------------------- 185 (607)
T ss_pred h------cCceEEEEEec--CCCCEEEEEECC-------CceEEEECC--------------------------------
Confidence 6 99999999887 778888887776 788777531
Q ss_pred cccccccccccccccccCCCCCCCCCCCCCCCCCCcccCCccCCCceEEEecChHHHHhccCceEEeccCcEEEEECCce
Q psy1919 322 FQSTSIDELKCVWTQHHRPHGRSETMPMLPRNDSTSEFQPLEDKQVEYFFASDASAVIEHTNRVIFLEDDDVAAVKDGSL 401 (737)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sd~~ail~~t~~vi~l~~~elA~~~~s~~ 401 (737)
+.+||||+..+|+.+..+++.+.+||++.++.+++
T Consensus 186 ---------------------------------------------~~~~~aSE~~al~~~~~~~~~l~pg~~~~~~~~~~ 220 (607)
T TIGR01135 186 ---------------------------------------------GENFVASDVTALLPVTRRVIYLEDGDIAILTRDGV 220 (607)
T ss_pred ---------------------------------------------CeEEEEEChHHHHhhCCEEEEeCCCeEEEEECCee
Confidence 47999999999999999999999999999988888
Q ss_pred EEEEccccCCCCCCcccEEeehhHHHHhcCCchHHHHHHHHcChHHHHHHHhccccccccccccccccchhHHHcCCCeE
Q psy1919 402 SIHRLRRSLDDPHGREITILKLEIQEIMKGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRL 481 (737)
Q Consensus 402 tI~r~ckk~g~~~~~~~~~lk~~~~~~~k~~y~~~M~kEI~EQP~~l~~~l~~~i~~~~~~i~l~~l~~~~~~L~~akrI 481 (737)
.++++. |.+..+..+.++|+...+.|++|+|+|++||+|||+.+++++..+...... .++.+. ..+.+.++++|
T Consensus 221 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~m~~eI~eqP~~l~~~l~~~~~~~~~--~~~~~~-~~~~l~~~~~I 294 (607)
T TIGR01135 221 RIYNFE---GAPVSREVRTIDWDLDAAEKGGYRHFMLKEIYEQPRALRDTLEGRISEAGV--VLEELG-AEELLKNVDRI 294 (607)
T ss_pred EEEeCC---CCccccceEEEeCCHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhccc--chhhcc-chhHhccCCEE
Confidence 888863 444567889999999999999999999999999999999999764321111 111121 12457899999
Q ss_pred EEEecchhHHHHHHHHHHHHHhcCCcEEEeccccccccCCCCCCCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecC
Q psy1919 482 MMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNT 561 (737)
Q Consensus 482 ~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~~~~~~l~~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~ 561 (737)
+|+|||+|+++++.+++++.++.++++.+..++++.+....+.++|++|+|||||+|++++++++.||++|++||+|||+
T Consensus 295 ~~~G~GsS~~aa~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dlvI~iS~SG~T~e~v~a~~~ak~~ga~~IaIT~~ 374 (607)
T TIGR01135 295 QIVACGTSYHAGLVAKYLIERLAGIPVEVEIASEFRYRKPVVDKDTLVIAISQSGETADTLAALRLAKELGAKTLGICNV 374 (607)
T ss_pred EEEEeechHHHHHHHHHHHHHhcCCCEEEecHHHHhhcCCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECC
Confidence 99999999999999999999998999988888888666566788999999999999999999999999999999999999
Q ss_pred CCCccccccceEEEcCCCCCccccchhHHHHHHHHHHHHHHHHhhhhcch-HHHHHHHHHHHHHHHHHHHHHhcccHHHH
Q psy1919 562 VGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISL-QTRRNEIIKGLKVIHEQIREVLQMDSEVQ 640 (737)
Q Consensus 562 ~~S~La~~AD~~L~~~ag~E~~vasTksftsql~~L~lLal~la~~~~~~-~~~~~~~~~~l~~l~~~i~~vl~~~~~~~ 640 (737)
++|||++.||++|.+++++|.++++|++|++|++++++|++.++..++.. .+.++++.+++..+|+.++++++.+++++
T Consensus 375 ~~S~La~~ad~~l~~~~~~e~~~~~tks~~s~l~~l~lL~~~l~~~~g~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 454 (607)
T TIGR01135 375 PGSTLVRESDHTLYTRAGPEIGVASTKAFTTQLTVLYLLALKLAKARGTLSAEEEAELVDGLRRLPALVEQVLKLEESIA 454 (607)
T ss_pred CCChHHhhcCceEEecCCCccchhhhHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 99999999999999999999899999999999999999998887665432 34567888899999999999997668899
Q ss_pred HHHHHHcCCCeEEEEecCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCeEEEEEcCCchhHHHHHHHH
Q psy1919 641 QLAKEMYEQKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALL 720 (737)
Q Consensus 641 ~lA~~l~~~~~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPialid~~t~Vi~l~~~d~~~~k~~~~l~ 720 (737)
++++.+.+.++++++|+ |++||+|+||||||+|++|+||++|+++||+|||++++++++|||++.++|+.++++.+.++
T Consensus 455 ~~a~~l~~~~~~~~lG~-G~~~g~A~E~aLKl~E~~~~~a~~~~~~Ef~HGP~~~i~~~~~vi~l~~~~~~~~~~~~~~~ 533 (607)
T TIGR01135 455 ELAERYADKHNFLFLGR-GLGYPIALEGALKLKEISYIHAEGYPAGELKHGPIALIDEGLPVVAIAPKDSLFEKTKSNVE 533 (607)
T ss_pred HHHHHhhCCCcEEEEeC-CCCHHHHHHHHHHHHHHHHHhccccchhhhccCcHhhhCCCCCEEEEEeCchHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999988888888888
Q ss_pred Hhhhcc
Q psy1919 721 QVIFTI 726 (737)
Q Consensus 721 ei~aR~ 726 (737)
++++++
T Consensus 534 ~~~~~g 539 (607)
T TIGR01135 534 EVKARG 539 (607)
T ss_pred HHHHcC
Confidence 887765
No 8
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=100.00 E-value=3.5e-44 Score=390.79 Aligned_cols=273 Identities=18% Similarity=0.257 Sum_probs=230.0
Q ss_pred HHHHHHHHcChHHHHHHHhccccccccccccccccchhHHHc--CCCeEEEEecchhHHHHHHHHHHHHHhcCCcEEEec
Q psy1919 435 YFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIR--RCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVEL 512 (737)
Q Consensus 435 ~~M~kEI~EQP~~l~~~l~~~i~~~~~~i~l~~l~~~~~~L~--~akrI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ 512 (737)
..|..|+.++|+.+++.+..+. +.++++++.+. ++++|+|+|||+|+++|+.++++|.+++++++.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~l~~~~---------~~l~~~~~~l~~~~~~~I~~~g~GsS~~aa~~~~~~~~k~~~i~v~~~~ 78 (340)
T PRK11382 8 TVDFLVTENMVQEVEKVLSHDV---------PLVHAIVEEMVKRDIDRIYFVACGSPLNAAQTAKHLADRFSDLQVYAIS 78 (340)
T ss_pred HHHHHHHhhchHHHHHHHHhhh---------HHHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHHcCCCeEEec
Confidence 3589999999999999987542 23566777775 499999999999999999999999999888999888
Q ss_pred cccccccCC-CCCCCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCCCCccccchhHHH
Q psy1919 513 ASDFLDRNT-PVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYT 591 (737)
Q Consensus 513 ase~~~~~~-~l~~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E~~vasTksft 591 (737)
+++|.+... .++++|++|+|||||+|+|++++++.||++|++||+|||+++|||++.||++|.+.+|+ +++
T Consensus 79 ~~~~~~~~~~~~~~~~lvI~iS~SGeT~e~i~al~~ak~~Ga~~I~IT~~~~S~L~~~ad~~l~~~ag~--------~~~ 150 (340)
T PRK11382 79 GWEFCDNTPYRLDDRCAVIGVSDYGKTEEVIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQADC--------IWE 150 (340)
T ss_pred cHHHHhcCCcCCCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEeCCCc--------hHH
Confidence 999876544 46789999999999999999999999999999999999999999999999999998775 233
Q ss_pred HHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHcCCCeEEEEecCCCCHHHH-HHHH
Q psy1919 592 SQFISLVMFALVMCEDRISLQTRRNEIIKGLKVIHEQIREVLQ-MDSEVQQLAKEMYEQKSMLLMGRGGYNYATC-MEGA 669 (737)
Q Consensus 592 sql~~L~lLal~la~~~~~~~~~~~~~~~~l~~l~~~i~~vl~-~~~~~~~lA~~l~~~~~~~~lG~GG~~y~~A-~EgA 669 (737)
.+++.++++++.+..... ....++++.+.++.+|+.++++++ +.+.++++++.+.+.+.++++|+ |++||+| +|||
T Consensus 151 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~~~a~~~~~~~~~~~lG~-G~~y~~A~~E~a 228 (340)
T PRK11382 151 IHLLLCYSVVLEMITRLA-PNAEIGKIKNDLKQLPNALGHLVRTWEEKGRQLGELASQWPMIYTVAA-GPLRPLGYKEGI 228 (340)
T ss_pred HHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeC-CCCHHHHHHHHH
Confidence 344444444444332222 123567888899999999998886 56778889998888899999999 9999997 8999
Q ss_pred HHHHHhccccccccccccccccccccccCCCeEEEEEcCCchhHHHHHHHHHhhhcc
Q psy1919 670 LKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIFTI 726 (737)
Q Consensus 670 LKlkE~s~i~Ae~~~a~Ef~HGPialid~~t~Vi~l~~~d~~~~k~~~~l~ei~aR~ 726 (737)
|||+|++|+||++|+++||+|||++++++++|||++.++|+.+++..+.++++++|+
T Consensus 229 lKl~E~~~i~a~~~~~~Ef~HGP~~li~~~~~vi~l~~~~~~~~~~~~~~~~l~~~~ 285 (340)
T PRK11382 229 VTLMEFTWTHGCVIESGEFRHGPLEIVEPGVPFLFLLGNDESRHTTERAINFVKQRT 285 (340)
T ss_pred HHHHHHhhhhcccccHHHhccChHHHhcCCceEEEEEcCcchHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999987766666666655554
No 9
>TIGR02815 agaS_fam putative sugar isomerase, AgaS family. Some members of this protein family are found in regions associated with N-acetyl-galactosamine and galactosamine untilization and are suggested to be isomerases.
Probab=100.00 E-value=1.5e-42 Score=381.98 Aligned_cols=272 Identities=17% Similarity=0.192 Sum_probs=213.8
Q ss_pred HHHHHHHcChHHHHHHHhccccccccccccccccchhHHH--cCCCeEEEEecchhHHHHHHHHHHHHHhcCCcEEEecc
Q psy1919 436 FMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEI--RRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELA 513 (737)
Q Consensus 436 ~M~kEI~EQP~~l~~~l~~~i~~~~~~i~l~~l~~~~~~L--~~akrI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~a 513 (737)
+..+||+|||+.|++++.. +.. . .+.++++++.+ +..++|+|+|||+||++|+.++++|++++++++.+..+
T Consensus 4 ~t~~EI~eqP~~l~~~~~~-~~~--~---~~~~~~~~~~~~~~~~~~i~~~g~GsS~~a~~~~~~~~~~~~~i~v~~~~~ 77 (372)
T TIGR02815 4 HTAREIRQQPALWRRLLTI-IQA--L---RPALNAFLEPLLARENLRIVLTGAGTSAFIGDALAPWLASHTGLNVSAVPT 77 (372)
T ss_pred hHHHHHHHChHHHHHHHHH-HHH--h---HHHHHHHHHHHHhCCCCEEEEEechHHHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 5789999999999875421 110 0 12244455544 45789999999999999999999999999999999999
Q ss_pred ccccccCCCC---CCCCeEEEEcCCCCcHHHHHHHHHHHHc--CCeEEEEecCCCCccccccc-----eEEEcCCC-CCc
Q psy1919 514 SDFLDRNTPV---FRDDVCFFISQSGETADSLMALRYCKAR--GALIVGVTNTVGSSISRESH-----CGIHINAG-PEI 582 (737)
Q Consensus 514 se~~~~~~~l---~~~dlvI~ISqSGeT~etl~al~~AKe~--Ga~tIaITn~~~S~La~~AD-----~~L~~~ag-~E~ 582 (737)
++|.+..... .+++|+|++||||+|+||++|++.||++ |+++|+|||+++|+|++.|| +++++++| +|.
T Consensus 78 ~e~~~~~~~~~~~~~~~lvi~iSqSGeT~etv~a~~~ak~~~~g~~~i~it~~~~s~la~~ad~~~~~~~i~~~ag~~e~ 157 (372)
T TIGR02815 78 TDLVSNPRQYLDPTRPTLLVSFARSGNSPESVAAVELADQLLPECYHLVLTCNEEGALYRNAINRSNAFALLMPAESNDR 157 (372)
T ss_pred cccccccccccCCCCCeEEEEEeCCcCcHHHHHHHHHHHHhCCCCcEEEEEcCCCCHHHHhhcccCceeEEEccCCCccc
Confidence 9985543322 3468999999999999999999999998 89999999999999999999 88999988 899
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH--cCCCeEEEEecCCC
Q psy1919 583 GVASTKAYTSQFISLVMFALVMCEDRISLQTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEM--YEQKSMLLMGRGGY 660 (737)
Q Consensus 583 ~vasTksftsql~~L~lLal~la~~~~~~~~~~~~~~~~l~~l~~~i~~vl~~~~~~~~lA~~l--~~~~~~~~lG~GG~ 660 (737)
++++||+|+++++++.++.. ... .. .+ .+..+++.+..+++.. .+..+++.+ .+.++++|+|+ |+
T Consensus 158 gva~Tksft~~l~al~~l~~---~~~--~~---~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lGr-G~ 224 (372)
T TIGR02815 158 SFAMTSSFSCMTLATLAVLG---PET--IE---SQ---TEERFADAALCILESG-QWDFSEGVLGYAPWERIVYLGS-GG 224 (372)
T ss_pred eeeeHHHHHHHHHHHHHHHc---ccc--CC---HH---HHHHHHHHHHHHHhhh-HHHHHHHHHhhcCCCeEEEEeC-CC
Confidence 99999999999877766521 111 11 11 2233444455555332 344445554 48899999999 99
Q ss_pred CHHHHHHHHHHHHHhcccc--ccccccccccccccccccCCCeEEEEEcCCch-hHHHHHHHHHhhhcc
Q psy1919 661 NYATCMEGALKIKELTYMH--SEGIMAGELKHGPLALIDNSMPVIMILTRDPV-YVKCMNALLQVIFTI 726 (737)
Q Consensus 661 ~y~~A~EgALKlkE~s~i~--Ae~~~a~Ef~HGPialid~~t~Vi~l~~~d~~-~~k~~~~l~ei~aR~ 726 (737)
+||+|+||||||||++|+| +.++.++||+|||++++++++|||+|.++|.. +....+.++++++||
T Consensus 225 ~y~~A~E~ALKlkE~~~~~~~~~~~~~~Ef~HGP~alv~~~~~vi~l~~~d~~~~~~~~~~l~e~~~~g 293 (372)
T TIGR02815 225 LQGLARESALKVLELTAGKVMAFYDSSLGFRHGPKSLVDDETLVVVYVSSDPYTRQYDLDLLAELRRDN 293 (372)
T ss_pred ChHHHHHHHHHHHHHHHHHHheeeccccccccChHHHhcCCCeEEEEEcCchhhhhhhHHHHHHHHhcC
Confidence 9999999999999999966 55667899999999999999999999998873 323358899999774
No 10
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.7e-42 Score=371.73 Aligned_cols=282 Identities=27% Similarity=0.448 Sum_probs=231.5
Q ss_pred HHHHHHHHcChHHHHHHHhccccccccccccccccchhHHHcC--CCeEEEEecchhHHHHHHHHHHHHHhcCCcEEEec
Q psy1919 435 YFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRR--CRRLMMIGCGTSYHSAVATRQLLEELTELPVMVEL 512 (737)
Q Consensus 435 ~~M~kEI~EQP~~l~~~l~~~i~~~~~~i~l~~l~~~~~~L~~--akrI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ 512 (737)
..|.+||.+||..+++.+...- ..+.++.+.+++ ..+|+++|||+|+++++.+++++++.++.++....
T Consensus 3 ~~m~~e~~~~p~~~~~~~~~~~---------~~~~~l~~~l~~~~~~~I~~~g~GsS~~~~~~~~~~~~~~~~~~~~~~~ 73 (340)
T COG2222 3 TLMLREIEQQPAVVARLLEANR---------AVLAELADFLRKRGIDRILFVGCGSSLHAATPAKYLLERELGLLVAAIP 73 (340)
T ss_pred chhHHHHHhhHHHHHHHHHhhh---------hHHHHHHHHHHhCCCcEEEEEecCchHHHHHHHHHHHHHhhCceeeeec
Confidence 4699999999999999886421 123344445543 47999999999999999999999988888888889
Q ss_pred cccccccCC-CCCCCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCCCCccccchhHHH
Q psy1919 513 ASDFLDRNT-PVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYT 591 (737)
Q Consensus 513 ase~~~~~~-~l~~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E~~vasTksft 591 (737)
++++..+.+ ...++.++|++||||+|+|++.+++.||+.||.||+|||..+|||++.||++|.+.+++|.+++.|++|+
T Consensus 74 ~se~~~~~~~~~~~~~lvi~~S~SG~TpE~vaa~~~a~~~ga~~i~lT~~~dSpLa~~ad~~i~~~~~~e~~~a~T~s~~ 153 (340)
T COG2222 74 ASEFLTNGAKYLGEDSLVIAFSQSGNTPESVAAAELAKEGGALTIALTNEEDSPLARAADYVIPYLAGEEASVAATKSFT 153 (340)
T ss_pred hhHHhccCccccCCCeEEEEEeCCCCCHHHHHHHHHhccCCCeEEEEecCCCChhhhcCCeeeeccCCchHHHHHHHHHH
Confidence 999976655 4566779999999999999999999999999999999999999999999999999999998899999999
Q ss_pred HHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCCCeEEEEecCCCCHHHHHHHHHH
Q psy1919 592 SQFISLVMFALVMCEDRISLQTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALK 671 (737)
Q Consensus 592 sql~~L~lLal~la~~~~~~~~~~~~~~~~l~~l~~~i~~vl~~~~~~~~lA~~l~~~~~~~~lG~GG~~y~~A~EgALK 671 (737)
++++.+..+...... .......+..++..+.+. .++.+++++..+.+.+++|++|+ |++||+|+|+|||
T Consensus 154 ~~~~a~l~~~a~~~~--------~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~lGs-G~~~g~A~e~aLk 222 (340)
T COG2222 154 ASLLALLALLAEYDG--------DAQLLAALPDLPLEAAKA--LEEDAQEFAEEYADEDRIYTLGS-GPLYGAAYEAALK 222 (340)
T ss_pred HHHHHHHHHHhhhcc--------cchhhhhhhcchHHHHHH--hhHHHHHHHHHhcCCCEEEEECC-cccHHHHHHHHHH
Confidence 987765544322211 112223344444443333 34567779999999999999999 9999999999999
Q ss_pred HHHhccccccccccccccccccccccCCCeEEEEEcCCchh---HHHHHHHHHhhhcc--cccccccccC
Q psy1919 672 IKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVY---VKCMNALLQVIFTI--FNLKSFFFRS 736 (737)
Q Consensus 672 lkE~s~i~Ae~~~a~Ef~HGPialid~~t~Vi~l~~~d~~~---~k~~~~l~ei~aR~--~~~~~~~~~~ 736 (737)
++||+|+|+++++++||+|||++++++++|||++.++|.++ +++++++++++++. ++-+|+.+..
T Consensus 223 l~E~~~~~s~a~~s~E~~HGp~elv~~~~pvi~~~~~d~tr~~~~r~~~~~~~~ga~v~vi~a~~~~~~~ 292 (340)
T COG2222 223 LKEMQWIHSEAISSGEFRHGPKELVEEGTPVLLFVSEDETRELDERALKFLKNYGAKVLVIDAKDAALDL 292 (340)
T ss_pred HHHHccccceeeeccccccCcHHHcCCCceEEEEecCCcchhHHHHHHHHHHhcCCeEEEEcCcccccCC
Confidence 99999999999999999999999999999999999988875 57888888888886 4445555443
No 11
>KOG1268|consensus
Probab=99.97 E-value=1.9e-30 Score=282.03 Aligned_cols=391 Identities=28% Similarity=0.396 Sum_probs=255.4
Q ss_pred CCCCCCccccccccccceEEeccCcccccccceEEEeecCcccccccCceeeeCcchhhhhcccchHhHHHHHHHhhcCC
Q psy1919 113 RNDSTSEFQPLEDKQVEYFFASDASAVIEHTNRVIFLERFDRGNCNCQSLTVPKSKKERRQDRNKSAVLRTNLWDILLGL 192 (737)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (737)
+.|+.++++|+..+..||||+||+.+++|||++++|||
T Consensus 230 ~~d~~~~~~~~~~~~vEff~aSDasa~IEhT~rV~flE------------------------------------------ 267 (670)
T KOG1268|consen 230 KTDTKASLHFLAGSPVEFFTASDASALIEHTKRVLFLE------------------------------------------ 267 (670)
T ss_pred CcccccccccccCCceEEEEecCcchhheecceeEEec------------------------------------------
Confidence 67899999999888999999999999999999999998
Q ss_pred CCCCCCCCccccccccCCcceeeecCcceeeecccCCCCCCCcceeeeehhhhhhcccCceEEEEEeeccCchhhhHhhc
Q psy1919 193 SSSWAGIEPRGLIEGTDDDVAAVKDGSLSIHRLRRSLDDPHGREITILKLEIQEIMKGNYSYFMQKEIFEQPESVVNTMR 272 (737)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~d~a~~~~~~l~i~~~~~~~~~~~~r~~~~~~~~~~~~~kg~y~~~m~keI~eqp~~~~~~~~ 272 (737)
||||||++||+|+||+.+....+ ..|+++++++++|+++||+|+||||||||||||+++||||
T Consensus 268 ----------------Dddia~v~dG~lsihr~~~~~~~-~~R~i~tlemEl~qImKG~yd~yMqKEI~EQpeS~~ntMR 330 (670)
T KOG1268|consen 268 ----------------DDDIAHVSDGELTIHRGKRTAGP-STRSIQTLEMELQQIMKGNYDYYMQKEIYEQPESLVNTMR 330 (670)
T ss_pred ----------------cCcEEEEecCceEEEeeccccCC-cchHHHHHHHHHHHHcCCchHhhhhhHHhhCchHHHHhcc
Confidence 88999999999999999987766 7899999999999999999999999999999999999999
Q ss_pred CccccCCCceEEecccccccccccccccCCCcccccCcc-ccccccccccccc---cc---ccccccccccccCCCCCCC
Q psy1919 273 GRINFETNSVILGGIKRKIRPKCIVVKLCPNMVDRRGEE-VNLLCRGSVRFQS---TS---IDELKCVWTQHHRPHGRSE 345 (737)
Q Consensus 273 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~ 345 (737)
||+++.++.+.|+|++++-.-. ||-.+ |-|-|++|.|+.. +. ++++|-.+.+--.
T Consensus 331 GRv~~~~~~V~LGGlk~~l~~i------------rr~rRli~iacgtSyhs~~A~R~ilEEL~eiPV~vElAsD------ 392 (670)
T KOG1268|consen 331 GRVSFPLNKVVLGGLKDYLPEI------------RRCRRLIMVACGTSYHSALATRPILEELSEIPVSVELASD------ 392 (670)
T ss_pred ceeccccceeeecCCcchhhhh------------hhccccEEEEecchHHHHHHHHHHHHHHhcCCeeeehhhh------
Confidence 9999999999999998542111 11223 3344999998522 22 3443322221000
Q ss_pred CCCCCCCCCCCcccCCccCCCceEEE-----ecChHHHHhccCceEEeccCcEEEEEC-CceEEEEccccCCCCC----C
Q psy1919 346 TMPMLPRNDSTSEFQPLEDKQVEYFF-----ASDASAVIEHTNRVIFLEDDDVAAVKD-GSLSIHRLRRSLDDPH----G 415 (737)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~sd~~ail~~t~~vi~l~~~elA~~~~-s~~tI~r~ckk~g~~~----~ 415 (737)
|+.++. ..|+ ++ +-+|+ ..|..--|.|+++---|..| ++. -+.+|.|.. ..|.-. +
T Consensus 393 ---flDR~~--pifR--dD--vc~FvSqSGETaDtllaL~Yc~~~gAl~vG----vtNtvGSsIsR~t-hCGvHiNaGpE 458 (670)
T KOG1268|consen 393 ---FLDRNT--PIFR--DD--VCFFVSQSGETADTLLALRYCKERGALTVG----VTNTVGSSISRET-HCGVHINAGPE 458 (670)
T ss_pred ---hHhcCC--Ccee--cc--EEEEEecCCchHHHHHHHHHHHhcCceEEE----eecccCccccccc-ccceeccCCCc
Confidence 000000 0000 00 22222 23555556787754333322 232 344455531 122210 1
Q ss_pred cccEEeehhHHH--------H-hcCCchH--HHHHHHH----cChHHHHHHHhccccccccccccccccchhHHHcCCCe
Q psy1919 416 REITILKLEIQE--------I-MKGNYSY--FMQKEIF----EQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRR 480 (737)
Q Consensus 416 ~~~~~lk~~~~~--------~-~k~~y~~--~M~kEI~----EQP~~l~~~l~~~i~~~~~~i~l~~l~~~~~~L~~akr 480 (737)
-++-.-|-..++ + +..+--. --.+||. +-|+.+++.|.- .+.+.+++..|..-+.
T Consensus 459 igvAsTKaYTSQ~i~lvm~aL~~s~d~is~~~RR~eIi~gL~~l~~~ikevL~l----------~~~i~~la~~l~~~~s 528 (670)
T KOG1268|consen 459 IGVASTKAYTSQYIALVMFALWMSEDRVSKQERRKEIIDGLKDLPSQIKEVLEL----------DPKIKDLAKELKDHKS 528 (670)
T ss_pred cceeechHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhc----------cHHHHHHHHHHhccce
Confidence 122111111111 0 1111000 0123443 345555554421 1346677788999999
Q ss_pred EEEEecchhHHHHHHHHHHHHHhcCCcEEEeccccccccCCCC-CCCC-eEEEEcCCCCcHHHHHHHHHHHHcCCeEEEE
Q psy1919 481 LMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPV-FRDD-VCFFISQSGETADSLMALRYCKARGALIVGV 558 (737)
Q Consensus 481 I~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~~~~~~l-~~~d-lvI~ISqSGeT~etl~al~~AKe~Ga~tIaI 558 (737)
++++|.|--|..|+.++.++.+++..+..-..+.|+.+.+..+ +++- ++.++...---+-...|++...+++-.-|.|
T Consensus 529 lLi~GRGy~~at~lEGAlKiKEisymHsEgilagElkHgplAlvd~~~pi~~i~~~D~~~~K~~na~qQv~aRkG~pIii 608 (670)
T KOG1268|consen 529 LLIMGRGYNFATALEGALKIKEISYMHSEGILAGELKHGPLALVDENLPIIMIATRDAVYPKCQNAIQQVTARKGRPIII 608 (670)
T ss_pred EEEecccccHHHHhhhhhhhheeeehhhchhhhcccccCceeEecCCCCEEEEEecCcccHHHHHHHHHHHhcCCCeEEE
Confidence 9999999999999999999999988887777788887776544 3333 3445566666788999999988887777888
Q ss_pred ecCCCCccccccceEEEcCCCCCccccchhHHHHHHHHHHHHHHHHhhhhc
Q psy1919 559 TNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRI 609 (737)
Q Consensus 559 Tn~~~S~La~~AD~~L~~~ag~E~~vasTksftsql~~L~lLal~la~~~~ 609 (737)
++..+..-.+..+.+|.+|-.. ... .+ +-.+.-|.+|+.+++..++
T Consensus 609 c~~~~~~~~~~~~~~~~vP~tv-DCl---Qg-il~viPlQLlsyhlav~rg 654 (670)
T KOG1268|consen 609 CDKGDKEEQKAGNKTLEVPQTV-DCL---QG-ILNVIPLQLLSYHLAVLRG 654 (670)
T ss_pred ecCCCchhhcccceEEeCCchh-hhh---hh-hhhhhhHHHHHHHHHHHcC
Confidence 8887776445556667665321 111 11 1234457777888776554
No 12
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=99.93 E-value=3.4e-26 Score=243.43 Aligned_cols=221 Identities=17% Similarity=0.192 Sum_probs=171.7
Q ss_pred hHHHHhccCceEEeccCcEEEEEC-CceEEEEccccCCCCCCcccEEeehhHHHHhcC-------------CchHHHHHH
Q psy1919 375 ASAVIEHTNRVIFLEDDDVAAVKD-GSLSIHRLRRSLDDPHGREITILKLEIQEIMKG-------------NYSYFMQKE 440 (737)
Q Consensus 375 ~~ail~~t~~vi~l~~~elA~~~~-s~~tI~r~ckk~g~~~~~~~~~lk~~~~~~~k~-------------~y~~~M~kE 440 (737)
+.+|++||+++.++++.|||..++ |++||.||||++|++ +|.+||..+.+.... +......+-
T Consensus 24 A~yil~~~~~~~~~si~elA~~a~VS~aTv~Rf~~kLGf~---Gf~efk~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (281)
T COG1737 24 ADYILANPDEVALLSIAELAERAGVSPATVVRFARKLGFE---GFSEFKLALAQELAEGRAQLLREIAEDDGPESILEKL 100 (281)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCC---CHHHHHHHHHHHHhhccchhhcccCCCCCHHHHHHHH
Confidence 578999999999999999999998 999999999999997 566666666643211 111111111
Q ss_pred HHcChHHHHHHHhccccccccccccccccchhHHHcCCCeEEEEecchhHHHHHHHHHHHHHhcCCcEEEecccccc-cc
Q psy1919 441 IFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFL-DR 519 (737)
Q Consensus 441 I~EQP~~l~~~l~~~i~~~~~~i~l~~l~~~~~~L~~akrI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~-~~ 519 (737)
+.+....+.++. +.++.+.++++++.|.++++|+|+|.|.|+.+|.+++++|.++ |+++.+.....+. ..
T Consensus 101 ~~~~~~~l~~t~--------~~l~~~~l~~av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~i-g~~~~~~~d~~~~~~~ 171 (281)
T COG1737 101 LAANIAALERTL--------NLLDEEALERAVELLAKARRIYFFGLGSSGLVASDLAYKLMRI-GLNVVALSDTHGQLMQ 171 (281)
T ss_pred HHHHHHHHHHHH--------HhcCHHHHHHHHHHHHcCCeEEEEEechhHHHHHHHHHHHHHc-CCceeEecchHHHHHH
Confidence 222222333322 2345577899999999999999999999999999999999999 6888877665543 23
Q ss_pred CCCCCCCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCCCCcccc-chhHHHHHHHHHH
Q psy1919 520 NTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVA-STKAYTSQFISLV 598 (737)
Q Consensus 520 ~~~l~~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E~~va-sTksftsql~~L~ 598 (737)
...++++|++|+||+||+|.+++++++.||++|++||+||+..+|||++.||++|+++..++.... .+.+.+++++++.
T Consensus 172 ~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~~~~~~~~~~~~~~s~~a~l~l~d 251 (281)
T COG1737 172 LALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLVPVAEESFFRSPISSRIAQLALID 251 (281)
T ss_pred HHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEeccCccccchhhhHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999765443322 3446777777777
Q ss_pred HHHHHHhhh
Q psy1919 599 MFALVMCED 607 (737)
Q Consensus 599 lLal~la~~ 607 (737)
+|...+...
T Consensus 252 ~L~~~~~~~ 260 (281)
T COG1737 252 ALITAVAQR 260 (281)
T ss_pred HHHHHHHHH
Confidence 777766554
No 13
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=2.2e-25 Score=252.42 Aligned_cols=373 Identities=18% Similarity=0.230 Sum_probs=248.5
Q ss_pred cccc--cccccceEEeccCcccccccceEEEeecCcccccccCceeeeCcchhhhhcccchHhHHHHHHHhhcCCCCCCC
Q psy1919 120 FQPL--EDKQVEYFFASDASAVIEHTNRVIFLERFDRGNCNCQSLTVPKSKKERRQDRNKSAVLRTNLWDILLGLSSSWA 197 (737)
Q Consensus 120 ~~~~--~~~~~~~~~~s~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (737)
.+|| |.|++|+|++||..|++++|++++||+|||++.++++++.+. .+
T Consensus 174 ~sPL~iG~g~~e~f~aSD~~a~l~~t~~~~~l~dgd~~~~~~~~v~~~-----------------------~g------- 223 (597)
T COG0449 174 GSPLVIGVGEGENFLASDVSALLNFTRRFVYLEEGDIAKLTTDGVSIN-----------------------DG------- 223 (597)
T ss_pred CCCeEEEecCCcceEecChhhhhhhhceEEEeCCCCEEEEECCcEEEe-----------------------cC-------
Confidence 4899 999999999999999999999999999999998888888631 00
Q ss_pred CCCccccccccCCcceeeecCcceeeecccCCCCCCCcceeeeehhhhhhcccCceEEEEEeeccCchhhhHhhcCcccc
Q psy1919 198 GIEPRGLIEGTDDDVAAVKDGSLSIHRLRRSLDDPHGREITILKLEIQEIMKGNYSYFMQKEIFEQPESVVNTMRGRINF 277 (737)
Q Consensus 198 ~~~~~~~~~~~~~d~a~~~~~~l~i~~~~~~~~~~~~r~~~~~~~~~~~~~kg~y~~~m~keI~eqp~~~~~~~~g~~~~ 277 (737)
. ..|++...+++...++||+|+|||+|||||||+.+.++++||+++
T Consensus 224 ---------------------------------~-v~r~~~~~~~~~~~a~Kg~y~hfMlKEI~EQP~~i~~tl~~~~~~ 269 (597)
T COG0449 224 ---------------------------------N-VLRDVPVIEWDLCAAEKGGFRHFMLKEIYEQPEALRNTLQGRLDE 269 (597)
T ss_pred ---------------------------------e-eeeeeEEeccChhHHhcCCCCchHHHHHHhhHHHHHHHHHhhhhh
Confidence 0 237889999999999999999999999999999999999999875
Q ss_pred CCCceEEecccccccccccccccCCCcccccCcccccc-ccccccc-----cc-ccccccccccc----cccCCCCCCCC
Q psy1919 278 ETNSVILGGIKRKIRPKCIVVKLCPNMVDRRGEEVNLL-CRGSVRF-----QS-TSIDELKCVWT----QHHRPHGRSET 346 (737)
Q Consensus 278 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~-~~~~~~~~~~~----~~~~~~~~~~~ 346 (737)
..+...++. +-+...+|.+. |++|.|. +| ..+..+|+.+. -.++..--++.
T Consensus 270 --~~~~~~~~~----------------~~~~~~rI~IvAcGTSYhAglv~ky~~E~la~ipv~Ve~aSEfry~~~~~~~~ 331 (597)
T COG0449 270 --LVQNELDLD----------------ILREVDRIIIVACGTSYHAGLVAKYFFERLAKIPVEVEEASEFRYREPALNPN 331 (597)
T ss_pred --hhhhhhchh----------------hhcccceEEEEECcHHHHHHHHHHHHHHHHhCCCeEEEeechhhhhccCCCCC
Confidence 223333332 01122367777 9999884 33 22344444422 11111100111
Q ss_pred CCCCCCCCCCcccCCccCCCceEEEecChHHHHhccCceEEeccCcEEEEEC-CceEEEEccc-----cCCCC----CCc
Q psy1919 347 MPMLPRNDSTSEFQPLEDKQVEYFFASDASAVIEHTNRVIFLEDDDVAAVKD-GSLSIHRLRR-----SLDDP----HGR 416 (737)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~sd~~ail~~t~~vi~l~~~elA~~~~-s~~tI~r~ck-----k~g~~----~~~ 416 (737)
-.++.++|| +| ..|..+-++++++-- .-...+|. -+.++.|... ..|.+ ..+
T Consensus 332 ~L~I~ISQS-----------GE---TaDTl~ALr~ak~~G----~~tlaItNv~gSti~Resd~~l~~~AGpEigVAsTK 393 (597)
T COG0449 332 TLVIAISQS-----------GE---TADTLAALRLAKEQG----AKTLAITNVPGSTIARESDHTLLIRAGPEIGVASTK 393 (597)
T ss_pred cEEEEEccC-----------cc---cHHHHHHHHHHHHcC----CCEEEEEecCCChhhcccceEEEeccCCceeeecch
Confidence 245556666 44 566666667776532 22233333 2333333211 12332 133
Q ss_pred ccEE-ee-hhHHHH----hcC----CchHHHHHHHHcChHHHHHHHhccccccccccccccccchhHHHcCCCeEEEEec
Q psy1919 417 EITI-LK-LEIQEI----MKG----NYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGC 486 (737)
Q Consensus 417 ~~~~-lk-~~~~~~----~k~----~y~~~M~kEI~EQP~~l~~~l~~~i~~~~~~i~l~~l~~~~~~L~~akrI~ivG~ 486 (737)
.|.. +. +.+-.+ ..+ .-..-..+++.+.|..+++.+.. .+.+.++.+.+...++++++|.
T Consensus 394 aftaQl~~L~lLal~~a~~~g~i~~~~~~~~~~~L~~lp~~i~~~l~~----------~~~i~~~a~~l~~~~~~~~lGR 463 (597)
T COG0449 394 AFTAQVLALYLLALYLAKQRGTISEEEERSLIKELQKLPNHIPKVLAA----------EEKIKELAKRLADAKDFFFLGR 463 (597)
T ss_pred hHHHHHHHHHHHHHHHhHhhCccchhHHHHHHHHHHHHHHHHHHHHhc----------CHHHHHHHHHhcccCCEEEEcC
Confidence 3321 00 000011 111 11112334555666666666641 1245666777899999999999
Q ss_pred chhHHHHHHHHHHHHHhcCCcEEEeccccccccCC-CCCCCCeEEEEcCCCC-cHHHHHHHHHHHHcCCeEEEEecCCCC
Q psy1919 487 GTSYHSAVATRQLLEELTELPVMVELASDFLDRNT-PVFRDDVCFFISQSGE-TADSLMALRYCKARGALIVGVTNTVGS 564 (737)
Q Consensus 487 GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~~~~~-~l~~~dlvI~ISqSGe-T~etl~al~~AKe~Ga~tIaITn~~~S 564 (737)
|..|.+|+.++.+|.++..+++....+.|+.|.+. .++++..||+|.-.+. -..+...++..+.+|++++.|+....
T Consensus 464 G~~ypvAlEgALKlKEIsYIHAEgy~aGElKHGpiALid~~~pVi~i~p~~~~~ek~~sni~Ev~aRg~~~i~i~~~~~- 542 (597)
T COG0449 464 GVLYPVALEGALKLKEISYIHAEGYAAGELKHGPIALIDENTPVIAIAPKPDLFEKTKSNIQEVRARGGKIIVIADEGD- 542 (597)
T ss_pred CCCcHhHhhhhhhhhhheeeccccccchhhccCceEEEcCCCcEEEEeCcchHHHHHHHHHHHHHcCCCeEEEEecCCc-
Confidence 99999999999999999999999999999988764 4578889999999996 57899999999999999999998766
Q ss_pred ccccccceEEEcCCCCCccccchhHHHHHHHHHHHHHHHHhhhhc
Q psy1919 565 SISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRI 609 (737)
Q Consensus 565 ~La~~AD~~L~~~ag~E~~vasTksftsql~~L~lLal~la~~~~ 609 (737)
.+...|..+.++...|... .+.. +..+.+||.+++..++
T Consensus 543 -~~~~~~~~i~~p~~~e~la----Pi~~-~iPlQLLAY~iA~~kG 581 (597)
T COG0449 543 -VAEDGDDLILLPEVDELLA----PLLY-TIPLQLLAYHIALAKG 581 (597)
T ss_pred -ccccCceEEecCCCcchhh----hHHH-HHHHHHHHHHHHHHcC
Confidence 5566677777765544322 2332 3347788888776655
No 14
>PRK15482 transcriptional regulator MurR; Provisional
Probab=99.92 E-value=5.1e-25 Score=234.60 Aligned_cols=228 Identities=14% Similarity=0.164 Sum_probs=164.0
Q ss_pred hHHHHhccCceEEeccCcEEEEEC-CceEEEEccccCCCCCCcccEEeehhHHHHh---cCCch-H--HHHHHHH--cCh
Q psy1919 375 ASAVIEHTNRVIFLEDDDVAAVKD-GSLSIHRLRRSLDDPHGREITILKLEIQEIM---KGNYS-Y--FMQKEIF--EQP 445 (737)
Q Consensus 375 ~~ail~~t~~vi~l~~~elA~~~~-s~~tI~r~ckk~g~~~~~~~~~lk~~~~~~~---k~~y~-~--~M~kEI~--EQP 445 (737)
+.+|++||+++..|++.|||..++ |.+||.|||||+|++ +|.+|+..+.... ..... . .....+. +..
T Consensus 22 a~yIl~n~~~v~~~si~elA~~~~vS~aTv~Rf~kkLGf~---Gf~efk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (285)
T PRK15482 22 ADFLRANVSELKSVSSRKMAKQLGISQSSIVKFAQKLGAQ---GFTELRMALIGEYSASREKTNATALHLHSSITSDDSL 98 (285)
T ss_pred HHHHHhCHHHHHhcCHHHHHHHhCCCHHHHHHHHHHhCCC---CHHHHHHHHHHHHhhhccccccccccccCCCCCCCCH
Confidence 578999999999999999999998 999999999999997 4555555554211 00000 0 0000000 001
Q ss_pred HHHHHHHh----ccccccccccccccccchhHHHcCCCeEEEEecchhHHHHHHHHHHHHHhcCCcEEEecccccc-ccC
Q psy1919 446 ESVVNTMR----GRINFETNSVILGGIKDYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFL-DRN 520 (737)
Q Consensus 446 ~~l~~~l~----~~i~~~~~~i~l~~l~~~~~~L~~akrI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~-~~~ 520 (737)
..+.+.+. ..++.+...++.+.++++++.|.++++|+|+|+|.|+.+|..+.++|.++ |.++.+..+.+.. ...
T Consensus 99 ~~i~~~~~~~~~~~i~~t~~~id~~~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~-g~~~~~~~d~~~~~~~~ 177 (285)
T PRK15482 99 EVIARKLNREKELALEQTCALFDYARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKI-GYRVACEADTHVQATVS 177 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCeeEEEEeChhHHHHHHHHHHHHhC-CCeeEEeccHhHHHHHH
Confidence 11111110 01111112345567889999999999999999999999999999999987 6777775543332 223
Q ss_pred CCCCCCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCCCCc-cccchhHHHHHHHHHHH
Q psy1919 521 TPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEI-GVASTKAYTSQFISLVM 599 (737)
Q Consensus 521 ~~l~~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E~-~vasTksftsql~~L~l 599 (737)
..+.++|++|+||+||+|++++++++.||++|+++|+||+..+|||++.||++|.++.++.. ....+.+.++++.++.+
T Consensus 178 ~~~~~~Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~~~~~~~~~~~~~ss~~~~~~~id~ 257 (285)
T PRK15482 178 QALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTVSGETEWRSSSMSTRTAQNSVTDL 257 (285)
T ss_pred hcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEcCCCccchhHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999875431 12345677777777777
Q ss_pred HHHHHhh
Q psy1919 600 FALVMCE 606 (737)
Q Consensus 600 Lal~la~ 606 (737)
|...+..
T Consensus 258 L~~~~~~ 264 (285)
T PRK15482 258 LFVGLVQ 264 (285)
T ss_pred HHHHHHH
Confidence 6555543
No 15
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=99.90 E-value=3.8e-24 Score=227.13 Aligned_cols=227 Identities=15% Similarity=0.238 Sum_probs=161.5
Q ss_pred hHHHHhccCceEEeccCcEEEEEC-CceEEEEccccCCCCCCcccEEeehhHHHHhcCCchHHHHHHH--HcChHHHH-H
Q psy1919 375 ASAVIEHTNRVIFLEDDDVAAVKD-GSLSIHRLRRSLDDPHGREITILKLEIQEIMKGNYSYFMQKEI--FEQPESVV-N 450 (737)
Q Consensus 375 ~~ail~~t~~vi~l~~~elA~~~~-s~~tI~r~ckk~g~~~~~~~~~lk~~~~~~~k~~y~~~M~kEI--~EQP~~l~-~ 450 (737)
+.+|++||+++..|++.|||..++ |.+||.|||||+|+++ |.+|+..+........ .+..+.+ .+.+..+. +
T Consensus 22 a~yil~n~~~v~~~si~~lA~~~~vS~aTv~Rf~kklG~~g---f~e~k~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 97 (284)
T PRK11302 22 AEVILASPQTAIHSSIATLAKMANVSEPTVNRFCRSLDTKG---FPDFKLHLAQSLANGT-PYVNRNVEEDDSVEAYTGK 97 (284)
T ss_pred HHHHHhCHHHHHhcCHHHHHHHhCCCHHHHHHHHHHcCCCC---HHHHHHHHHHHhhccc-cccccCCCCCCCHHHHHHH
Confidence 578999999999999999999998 9999999999999974 4555555543211000 0000000 01111111 1
Q ss_pred HHh---ccccccccccccccccchhHHHcCCCeEEEEecchhHHHHHHHHHHHHHhcCCcEEEecccccc-ccCCCCCCC
Q psy1919 451 TMR---GRINFETNSVILGGIKDYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFL-DRNTPVFRD 526 (737)
Q Consensus 451 ~l~---~~i~~~~~~i~l~~l~~~~~~L~~akrI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~-~~~~~l~~~ 526 (737)
.+. ..+......++.+.++++++.|.++++|+|+|+|+|+.+|..++++|.++ |+++.......+. .....+.++
T Consensus 98 ~~~~~~~~l~~t~~~id~~~i~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~ 176 (284)
T PRK11302 98 IFESAMASLDHARQSLDPSAINRAVDLLTQAKKISFFGLGASAAVAHDAQNKFFRF-NVPVVYFDDIVMQRMSCMNSSDG 176 (284)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCeEEEEEcchHHHHHHHHHHHHHhc-CCceEecCCHHHHHHHHHhCCCC
Confidence 110 01111112345567889999999999999999999999999999999886 6887765432221 112346789
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCCCCcc-ccchhHHHHHHHHHHHHHHHHh
Q psy1919 527 DVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIG-VASTKAYTSQFISLVMFALVMC 605 (737)
Q Consensus 527 dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E~~-vasTksftsql~~L~lLal~la 605 (737)
|++|++|+||+|++++++++.||++|++||+||+ .+|||++.||++|.++..++.. .....+.++++.++.+|...+.
T Consensus 177 D~vI~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~-~~s~l~~~ad~~l~~~~~~~~~~~~~~~s~~~~~~l~d~L~~~l~ 255 (284)
T PRK11302 177 DVVVLISHTGRTKSLVELAQLARENGATVIAITS-AGSPLAREATLALTLDVPEDTDIYMPMVSRIAQLTVIDVLATGFT 255 (284)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEECC-CCChhHHhCCEEEecCCCccchhcchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 8999999999999987543321 2235567777777777766655
Q ss_pred hh
Q psy1919 606 ED 607 (737)
Q Consensus 606 ~~ 607 (737)
..
T Consensus 256 ~~ 257 (284)
T PRK11302 256 LR 257 (284)
T ss_pred HH
Confidence 44
No 16
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=99.90 E-value=2.6e-24 Score=228.09 Aligned_cols=221 Identities=17% Similarity=0.185 Sum_probs=164.4
Q ss_pred hHHHHhccCceEEeccCcEEEEEC-CceEEEEccccCCCCCCcccEEeehhHHHHhcC---CchHHHHHHH---------
Q psy1919 375 ASAVIEHTNRVIFLEDDDVAAVKD-GSLSIHRLRRSLDDPHGREITILKLEIQEIMKG---NYSYFMQKEI--------- 441 (737)
Q Consensus 375 ~~ail~~t~~vi~l~~~elA~~~~-s~~tI~r~ckk~g~~~~~~~~~lk~~~~~~~k~---~y~~~M~kEI--------- 441 (737)
+.+|++||+++..|++.|||..++ |.+||.|||||+|++ +|.+|+..+...... .+......++
T Consensus 18 a~yil~n~~~v~~~si~elA~~~~vS~aTv~Rf~kklG~~---Gf~efk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (278)
T PRK11557 18 ADYLLLQPDTARHLSSQQLANEAGVSQSSVVKFAQKLGYK---GFPALKLALSEALASQPEPPSVPVHNQIRGDDPLRLV 94 (278)
T ss_pred HHHHHhCHHHHHhcCHHHHHHHhCCCHHHHHHHHHHcCCC---CHHHHHHHHHHHhhcccccccccccCCCCCCCCHHHH
Confidence 568999999999999999999998 999999999999997 555556565532110 0000001111
Q ss_pred -----HcChHHHHHHHhccccccccccccccccchhHHHcCCCeEEEEecchhHHHHHHHHHHHHHhcCCcEEEeccccc
Q psy1919 442 -----FEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDF 516 (737)
Q Consensus 442 -----~EQP~~l~~~l~~~i~~~~~~i~l~~l~~~~~~L~~akrI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~ 516 (737)
...-+.+.+++ ..++.+.++++++.|.++++|+|+|+|+|+..|.++.++|.++ |+++......+.
T Consensus 95 ~~~~~~~~~~~l~~t~--------~~~~~~~l~~~~~~i~~a~~I~i~G~G~s~~~A~~~~~~l~~~-g~~~~~~~d~~~ 165 (278)
T PRK11557 95 GEKLIKENTAAMRATL--------DVNSEEKLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKI-GINAVAERDMHA 165 (278)
T ss_pred HHHHHHHHHHHHHHHH--------HhcCHHHHHHHHHHHhcCCeEEEEecChhHHHHHHHHHHHhhC-CCeEEEcCChHH
Confidence 11112222222 2234567888999999999999999999999999999999987 677766433222
Q ss_pred -cccCCCCCCCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCC-CCccccchhHHHHHH
Q psy1919 517 -LDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAG-PEIGVASTKAYTSQF 594 (737)
Q Consensus 517 -~~~~~~l~~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag-~E~~vasTksftsql 594 (737)
......+.++|++|+||+||+|++++++++.||++|++||+||+..+||++++||++|++... +......+.++++++
T Consensus 166 ~~~~~~~~~~~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~s~~~~~ 245 (278)
T PRK11557 166 LLATVQALSPDDLLLAISYSGERRELNLAADEALRVGAKVLAITGFTPNALQQRASHCLYTIAEEQATRSAAISSTHAQG 245 (278)
T ss_pred HHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEEeCCCCcccchHHHHHHHHHH
Confidence 222335688999999999999999999999999999999999999999999999999987653 222234567888888
Q ss_pred HHHHHHHHHHhhh
Q psy1919 595 ISLVMFALVMCED 607 (737)
Q Consensus 595 ~~L~lLal~la~~ 607 (737)
+++.+|...+...
T Consensus 246 ~l~d~L~~~~~~~ 258 (278)
T PRK11557 246 MLTDLLFMALIQQ 258 (278)
T ss_pred HHHHHHHHHHHHh
Confidence 8777776665543
No 17
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=99.90 E-value=5.8e-24 Score=227.09 Aligned_cols=221 Identities=15% Similarity=0.134 Sum_probs=166.3
Q ss_pred hHHHHhccCceEEeccCcEEEEEC-CceEEEEccccCCCCCCcccEEeehhHHHHhcCC-------------chHHHHHH
Q psy1919 375 ASAVIEHTNRVIFLEDDDVAAVKD-GSLSIHRLRRSLDDPHGREITILKLEIQEIMKGN-------------YSYFMQKE 440 (737)
Q Consensus 375 ~~ail~~t~~vi~l~~~elA~~~~-s~~tI~r~ckk~g~~~~~~~~~lk~~~~~~~k~~-------------y~~~M~kE 440 (737)
+.+|++|++++..|++.|||..++ |.+||.|||||+|++ +|.+|+..+....... ....+.+.
T Consensus 34 a~yil~~~~~v~~~si~~lA~~~~vS~aTi~Rf~kkLGf~---gf~efk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (292)
T PRK11337 34 VEWLLKPGDLSEATALKDIAEALAVSEAMIVKVAKKLGFS---GFRNLRSALEDYFSQSEQVLHSELSFDDAPQDVVNKV 110 (292)
T ss_pred HHHHHhCHHHHHhcCHHHHHHHhCCChHHHHHHHHHcCCC---CHHHHHHHHHHHhccccccccCCCCCCCCHHHHHHHH
Confidence 578999999999999999999998 999999999999997 5556666655322110 01111111
Q ss_pred HHcChHHHHHHHhccccccccccccccccchhHHHcCCCeEEEEecchhHHHHHHHHHHHHHhcCCcEEEecccccc-cc
Q psy1919 441 IFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFL-DR 519 (737)
Q Consensus 441 I~EQP~~l~~~l~~~i~~~~~~i~l~~l~~~~~~L~~akrI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~-~~ 519 (737)
+...-+.+.+++ ..++.+.++++++.|.++++|+|+|+|+|+.+|..+.++|.++ |+++.+....+.. ..
T Consensus 111 ~~~~~~~i~~t~--------~~l~~~~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~-g~~~~~~~d~~~~~~~ 181 (292)
T PRK11337 111 FNTSLQAIEETQ--------SILDVDEFHRAARFFYQARQRDLYGAGGSAAIARDVQHKFLRI-GVRCQAYDDAHIMLMS 181 (292)
T ss_pred HHHHHHHHHHHH--------HhcCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHHHHHHHhhC-CCeEEEcCCHHHHHHH
Confidence 111122222222 2244567889999999999999999999999999999999987 6887766544332 22
Q ss_pred CCCCCCCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCCCC-ccccchhHHHHHHHHHH
Q psy1919 520 NTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE-IGVASTKAYTSQFISLV 598 (737)
Q Consensus 520 ~~~l~~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E-~~vasTksftsql~~L~ 598 (737)
...++++|++|+||+||+|++++++++.||++|+++|+||++.+|||++.||++|+++.... .....+.++++++.++.
T Consensus 182 ~~~~~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~s~~~~~~i~d 261 (292)
T PRK11337 182 AALLQEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVICSTAQGSPLLGENAAARIAQLNILD 261 (292)
T ss_pred HhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEcCCCCcccccchHHHHHHHHHHHH
Confidence 34568899999999999999999999999999999999999999999999999999876432 11223567777877777
Q ss_pred HHHHHHhhh
Q psy1919 599 MFALVMCED 607 (737)
Q Consensus 599 lLal~la~~ 607 (737)
+|...+...
T Consensus 262 ~L~~~l~~~ 270 (292)
T PRK11337 262 AFFVSVAQL 270 (292)
T ss_pred HHHHHHHHH
Confidence 776666543
No 18
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.89 E-value=7.2e-23 Score=230.84 Aligned_cols=189 Identities=20% Similarity=0.244 Sum_probs=147.9
Q ss_pred ccEEEEcCCCceEEEEccCCchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeC-CCCCEEEEE
Q psy1919 2 KCIALDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSD-IDQTFCVVH 80 (737)
Q Consensus 2 ~gIa~~~~~~~~i~~~K~~G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~-~~~~~avvh 80 (737)
-||++. ++.++.++|+.|+|+++++... . .+.|++|||||||||+|.++..|+|||..+ ..++++|||
T Consensus 50 aGIa~~--d~~~i~~~K~~Glv~~vf~~~~--------~-~l~G~~gIGH~RyaT~G~~~~~naqP~~~~~~~g~ialvh 118 (474)
T PRK06388 50 AGMAVF--DGRKIHLKKGMGLVTDVFNPAT--------D-PIKGIVGVGHTRYSTAGSKGVENAGPFVINSSLGYIGISH 118 (474)
T ss_pred ceEEEE--cCCEEEEEecCcchHHHhhhhh--------h-cCCCcEEEeeeeeeecCCCCccCCCCeEeecCCCCEEEEE
Confidence 489997 5567999999999999997531 1 578999999999999999889999999754 568899999
Q ss_pred cceecchHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCccccccccccceEEeccCcccccccceEEEeecCcccccccC
Q psy1919 81 NGIVTNYKELKAFLTNKDHRPHGRSETMPMLPRNDSTSEFQPLEDKQVEYFFASDASAVIEHTNRVIFLERFDRGNCNCQ 160 (737)
Q Consensus 81 NG~I~N~~~Lr~~L~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~l~~~~~~~~~~~ 160 (737)
||+|+||.+||++|+++|+ .|.|++|+ |
T Consensus 119 NG~I~N~~eLr~~L~~~G~-------------------------------~F~s~sDt------E--------------- 146 (474)
T PRK06388 119 NGEIVNADELREEMKKEGY-------------------------------IFQSDSDT------E--------------- 146 (474)
T ss_pred CceECCHHHHHHHHHHCCC-------------------------------cccCCCHH------H---------------
Confidence 9999999999999999999 89999999 8
Q ss_pred ceeeeCcchhhhhcccchHhHHHHHHHhhcCCCCCCCCCCccccccccCCcceeeecCcceeeecccCCCCCCCcceeee
Q psy1919 161 SLTVPKSKKERRQDRNKSAVLRTNLWDILLGLSSSWAGIEPRGLIEGTDDDVAAVKDGSLSIHRLRRSLDDPHGREITIL 240 (737)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~l~i~~~~~~~~~~~~r~~~~~ 240 (737)
++++ |+...+.. . ++.+++.. ...
T Consensus 147 --Vi~~--------------li~~~~~~-~---------~~~eai~~------------------------------~~~ 170 (474)
T PRK06388 147 --VMLA--------------ELSRNISK-Y---------GLKEGFER------------------------------SME 170 (474)
T ss_pred --HHHH--------------HHHHHHhc-C---------CHHHHHHH------------------------------HHH
Confidence 6655 55444321 0 12233332 445
Q ss_pred ehhhhhhcccCceEEEEEeeccCchhhhHhhcCccccCCCceEEecccccccccccccccCCCcccccCccccccccccc
Q psy1919 241 KLEIQEIMKGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKRKIRPKCIVVKLCPNMVDRRGEEVNLLCRGSV 320 (737)
Q Consensus 241 ~~~~~~~~kg~y~~~m~keI~eqp~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (737)
++ +|.|+..++.. +.++.++. +.+..|+.+|..+
T Consensus 171 ~l------~G~ya~vi~~~-----~~l~a~RD----p~GiRPL~~G~~~------------------------------- 204 (474)
T PRK06388 171 RL------RGAYACALMIN-----DRLYAIRD----PNGIRPLVLGKNF------------------------------- 204 (474)
T ss_pred hc------cCceeEEEEEC-----CEEEEEEC----CCCCCceEEEecC-------------------------------
Confidence 56 99999998754 45555544 3456788777631
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCCCCCCcccCCccCCCceEEEecChHHHHhccC-ceEEeccCcEEEEECC
Q psy1919 321 RFQSTSIDELKCVWTQHHRPHGRSETMPMLPRNDSTSEFQPLEDKQVEYFFASDASAVIEHTN-RVIFLEDDDVAAVKDG 399 (737)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sd~~ail~~t~-~vi~l~~~elA~~~~s 399 (737)
+.++||||..||..+.. .+..++.||++.++.+
T Consensus 205 ----------------------------------------------~~~~~ASE~~Al~~~~~~~i~~l~PGeiv~i~~~ 238 (474)
T PRK06388 205 ----------------------------------------------DGYIIASESCAIDALSGTTIKNVEPGEVVEVFDN 238 (474)
T ss_pred ----------------------------------------------CEEEEEEChHHHHhccCcEEEEeCCCEEEEEECC
Confidence 46999999999999877 6778999999999986
Q ss_pred ce
Q psy1919 400 SL 401 (737)
Q Consensus 400 ~~ 401 (737)
+.
T Consensus 239 g~ 240 (474)
T PRK06388 239 GY 240 (474)
T ss_pred ce
Confidence 65
No 19
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.88 E-value=2.4e-22 Score=236.41 Aligned_cols=381 Identities=20% Similarity=0.260 Sum_probs=217.1
Q ss_pred cceEEeccCcccccccceEEEeecCcccccccCceeeeCcchhhhhcccchHhHHHHHHHhhcCCCCCCCCCCccccccc
Q psy1919 128 VEYFFASDASAVIEHTNRVIFLERFDRGNCNCQSLTVPKSKKERRQDRNKSAVLRTNLWDILLGLSSSWAGIEPRGLIEG 207 (737)
Q Consensus 128 ~~~~~~s~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (737)
+|+|||||..|+++||++++||+|||
T Consensus 242 ~~~~~aSd~~a~~~~t~~~~~l~dg~------------------------------------------------------ 267 (670)
T PTZ00394 242 LEVFFSSDVNSFAEYTREVVFLEDGD------------------------------------------------------ 267 (670)
T ss_pred CcEEEEeChHHHHHhhceEEEecCCe------------------------------------------------------
Confidence 58999999999999999999998544
Q ss_pred cCCcceeeecCcceeeecccCCCCCCCcceeeeehhhhhhcccCceEEEEEeeccCchhhhHhhcCccccCCCceEEecc
Q psy1919 208 TDDDVAAVKDGSLSIHRLRRSLDDPHGREITILKLEIQEIMKGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGI 287 (737)
Q Consensus 208 ~~~d~a~~~~~~l~i~~~~~~~~~~~~r~~~~~~~~~~~~~kg~y~~~m~keI~eqp~~~~~~~~g~~~~~~~~~~~~g~ 287 (737)
+|++++|++.||+..........|++...+++.+.++||+|+|||+|||||||+++.++++||++.....+.+.++
T Consensus 268 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~y~hfMlkEI~EQP~~l~~~l~~~~~~~~~~~~l~~~ 343 (670)
T PTZ00394 268 ----IAHYCDGALRFYNAAERQRSIVKREVQHLDAKPEGLSKGNYPHFMLKEIYEQPESVISSMHGRIDFSSGTVQLSGF 343 (670)
T ss_pred ----EEEEECCEEEEEeCCCCcccccccceEEEeCCHhHhhcCCCchHHHHHHHhhHHHHHHHHHhhhhhccCcccchhh
Confidence 5555556666666332111235578899999999999999999999999999999999999987533222222223
Q ss_pred cccccccccccccCCCcccccCcccccc-cccccccccc------cccccccccc----cccCCCCCCCCCCCCCCCCCC
Q psy1919 288 KRKIRPKCIVVKLCPNMVDRRGEEVNLL-CRGSVRFQST------SIDELKCVWT----QHHRPHGRSETMPMLPRNDST 356 (737)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 356 (737)
... . +. .+ +.-.+|-+. |++|.+.... .+..++..+. ..+....-.+....+-+++|
T Consensus 344 ~~~--~----~~----~l-~~a~rI~ivG~GtS~~aa~~ak~~~~kl~~i~v~v~~asef~~~~~~~~~~dlvI~ISqS- 411 (670)
T PTZ00394 344 TQQ--S----IR----AI-LTSRRILFIACGTSLNSCLAVRPLFEELVPLPISVENASDFLDRRPRIQRDDVCFFVSQS- 411 (670)
T ss_pred HHH--H----HH----HH-hCCCEEEEEEechHHHHHHHHHHHHHHhcCCCEEEeccchhhhhccCCCCCCEEEEEECC-
Confidence 100 0 00 00 011244444 6666542110 0111110000 00000000000011111222
Q ss_pred cccCCccCCCceEEEecChHHHHhccCceEEeccCcEEEEEC-CceEEEEccc-----cCCCC----CCcccEE--eehh
Q psy1919 357 SEFQPLEDKQVEYFFASDASAVIEHTNRVIFLEDDDVAAVKD-GSLSIHRLRR-----SLDDP----HGREITI--LKLE 424 (737)
Q Consensus 357 ~~~~~~~~~~~~~~~~sd~~ail~~t~~vi~l~~~elA~~~~-s~~tI~r~ck-----k~g~~----~~~~~~~--lk~~ 424 (737)
++ +.|+...++..++- .. -...+|. .+.++.+.|. ..|.+ ..+.|.. .-+.
T Consensus 412 ----------Ge---T~dtl~Al~~Ak~~---Ga-~tIaITn~~~S~La~~AD~~l~~~ag~E~~va~Tks~tsql~~l~ 474 (670)
T PTZ00394 412 ----------GE---TADTLMALQLCKEA---GA-MCVGITNVVGSSISRLTHYAIHLNAGVEVGVASTKAYTSQVVVLT 474 (670)
T ss_pred ----------cC---cHHHHHHHHHHHHC---CC-cEEEEECCCCCHHHHhcCeEEEecccccccccccHhHHHHHHHHH
Confidence 11 34555555554432 11 1112221 1111111110 01111 0111110 0000
Q ss_pred HHHH---h-cCCc---hHHHHHHHHcChHHHHHHHhccccccccccccccccchhHHHcCCCeEEEEecchhHHHHHHHH
Q psy1919 425 IQEI---M-KGNY---SYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGCGTSYHSAVATR 497 (737)
Q Consensus 425 ~~~~---~-k~~y---~~~M~kEI~EQP~~l~~~l~~~i~~~~~~i~l~~l~~~~~~L~~akrI~ivG~GsS~~aA~~~~ 497 (737)
+..+ . .+.. ..-+.+++...|+.+.+.+... .+.++++++.+...++++++|.|.+|.+|+.++
T Consensus 475 llal~la~~~~~~~~~~~~l~~~l~~lp~~i~~~l~~~---------~~~~~~~a~~l~~~~~~~~lGrG~~y~~A~EgA 545 (670)
T PTZ00394 475 LVALLLSSDSVRLQERRNEIIRGLAELPAAISECLKIT---------HDPVKALAARLKESSSILVLGRGYDLATAMEAA 545 (670)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHhhc---------hHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHH
Confidence 0000 1 1110 0123345555666666655320 023556777888999999999999999999999
Q ss_pred HHHHHhcCCcEEEeccccccccCC-CCCCCCeEEEEcCCCCcH-HHHHHHHHHHHcCCeEEEEecCCCCccccccceEEE
Q psy1919 498 QLLEELTELPVMVELASDFLDRNT-PVFRDDVCFFISQSGETA-DSLMALRYCKARGALIVGVTNTVGSSISRESHCGIH 575 (737)
Q Consensus 498 ~~l~~~~gi~v~~~~ase~~~~~~-~l~~~dlvI~ISqSGeT~-etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~ 575 (737)
.+|+++..+++..+.+.||.|.+. .++++..+|++.-.|++. .+..+++..+++|+++++||+..+..+...++.++.
T Consensus 546 LKlkE~syi~ae~y~~~EfkHGP~alid~~~pVi~l~~~~~~~e~~~~~~~evk~~g~~vi~I~~~~~~~~~~~~~~~i~ 625 (670)
T PTZ00394 546 LKVKELSYVHTEGIHSGELKHGPLALIDETSPVLAMCTHDKHFGLSKSAVQQVKARGGAVVVFATEVDAELKAAASEIVL 625 (670)
T ss_pred HHHHHHHHHHhCcCChhhccCCcHHHhcCCceEEEEEcCCchHHHHHHHHHHHHHcCCeEEEEECCCcchhcccCCcEEE
Confidence 999999999998888899988764 356777888887777765 477899999999999999998654455566677777
Q ss_pred cCCCCCccccchhHHHHHHHHHHHHHHHHhhhhc
Q psy1919 576 INAGPEIGVASTKAYTSQFISLVMFALVMCEDRI 609 (737)
Q Consensus 576 ~~ag~E~~vasTksftsql~~L~lLal~la~~~~ 609 (737)
++...+. ...+. .++.+.+||.+++..++
T Consensus 626 vp~~~~~----l~pll-~~iplQllAy~~A~~rG 654 (670)
T PTZ00394 626 VPKTVDC----LQCVV-NVIPFQLLAYYMALLRG 654 (670)
T ss_pred CCCCchh----HhHHH-HHHHHHHHHHHHHHHcC
Confidence 7753332 12222 33456677777766554
No 20
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.87 E-value=1.8e-22 Score=227.88 Aligned_cols=89 Identities=25% Similarity=0.304 Sum_probs=77.5
Q ss_pred ccEEEEcCCCceEEEEccCCchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeC-CCCCEEEEE
Q psy1919 2 KCIALDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSD-IDQTFCVVH 80 (737)
Q Consensus 2 ~gIa~~~~~~~~i~~~K~~G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~-~~~~~avvh 80 (737)
-||++. ++.++.++|+.|+|.++++.+. .+. .+.|+++||||||||+|.++..|+|||... .+++++|||
T Consensus 42 aGIa~~--d~~~i~~~K~~Glv~~vf~~~~------~l~-~l~G~~~IGH~RysT~G~~~~~naqP~~~~~~~g~ialvh 112 (484)
T PRK07272 42 AGIVSN--DNGKLKGHRDLGLLSEVFKDPA------DLD-KLTGQAAIGHVRYATAGSASIENIQPFLFHFHDMQFGLAH 112 (484)
T ss_pred ceEEEE--eCCeeEEEecCCcccchhcchh------hHh-cCCCcEEEEEeeccccCCCCcCCCCCEEeecCCCCEEEEE
Confidence 489997 5667999999999999996422 223 578999999999999999889999999754 568899999
Q ss_pred cceecchHHHHHHHhcCCC
Q psy1919 81 NGIVTNYKELKAFLTNKDH 99 (737)
Q Consensus 81 NG~I~N~~~Lr~~L~~~G~ 99 (737)
||+|+||.+||++|+++|+
T Consensus 113 NG~I~N~~eLr~~L~~~G~ 131 (484)
T PRK07272 113 NGNLTNAVSLRKELEKQGA 131 (484)
T ss_pred EEEEeCHHHHHHHHHhCCC
Confidence 9999999999999999999
No 21
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=99.87 E-value=3.3e-22 Score=204.97 Aligned_cols=184 Identities=40% Similarity=0.666 Sum_probs=143.5
Q ss_pred ccEEEEcCCCceEEEEccCCchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeCCCCCEEEEEc
Q psy1919 2 KCIALDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHN 81 (737)
Q Consensus 2 ~gIa~~~~~~~~i~~~K~~G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~~~~~~avvhN 81 (737)
-||++. ++.++.++|+.|.++++++.... . .+.++++|||+||||+|.++..|+|||.. .++++++|||
T Consensus 31 ~Gi~~~--~~~~~~~~k~~g~~~~~~~~~~~-------~-~~~~~~~igH~R~at~g~~~~~n~qPf~~-~~~~~~~vhN 99 (215)
T cd00714 31 AGIAVI--GDGSLEVVKAVGKVANLEEKLAE-------K-PLSGHVGIGHTRWATHGEPTDVNAHPHRS-CDGEIAVVHN 99 (215)
T ss_pred ceEEEE--eCCEEEEEEcCccHHHHHHHhhh-------c-cCCccEEEEEEEccCCCCCCccCCCCCCc-CCCCEEEEEe
Confidence 378887 44679999999999999875322 1 35689999999999999877899999964 4578999999
Q ss_pred ceecchHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCccccccccccceEEeccCcccccccceEEEeecCcccccccCc
Q psy1919 82 GIVTNYKELKAFLTNKDHRPHGRSETMPMLPRNDSTSEFQPLEDKQVEYFFASDASAVIEHTNRVIFLERFDRGNCNCQS 161 (737)
Q Consensus 82 G~I~N~~~Lr~~L~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~l~~~~~~~~~~~~ 161 (737)
|+|+||.+||++|+++|+ .|.+++|+ |
T Consensus 100 G~I~N~~~Lr~~L~~~g~-------------------------------~~~~~sDs------E---------------- 126 (215)
T cd00714 100 GIIENYAELKEELEAKGY-------------------------------KFESETDT------E---------------- 126 (215)
T ss_pred EEEcCHHHHHHHHHhcCC-------------------------------cccCCCHH------H----------------
Confidence 999999999999999999 78889999 7
Q ss_pred eeeeCcchhhhhcccchHhHHHHHHHhhcCCCCCCCCCCccccccccCCcceeeecCcceeeecccCCCCCCCcceeeee
Q psy1919 162 LTVPKSKKERRQDRNKSAVLRTNLWDILLGLSSSWAGIEPRGLIEGTDDDVAAVKDGSLSIHRLRRSLDDPHGREITILK 241 (737)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~l~i~~~~~~~~~~~~r~~~~~~ 241 (737)
++++ |+...+.. +.++.+++.. ...+
T Consensus 127 -vi~~--------------l~~~~~~~---------~~~~~~ai~~------------------------------~~~~ 152 (215)
T cd00714 127 -VIAH--------------LIEYYYDG---------GLDLLEAVKK------------------------------ALKR 152 (215)
T ss_pred -HHHH--------------HHHHHHhc---------CCCHHHHHHH------------------------------HHHH
Confidence 4443 44443321 1123333332 4445
Q ss_pred hhhhhhcccCceEEEEEeeccCchhhhHhhcCccccCCCceEEecccccccccccccccCCCcccccCcccccccccccc
Q psy1919 242 LEIQEIMKGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKRKIRPKCIVVKLCPNMVDRRGEEVNLLCRGSVR 321 (737)
Q Consensus 242 ~~~~~~~kg~y~~~m~keI~eqp~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (737)
+ +|.|+..+..+ +.|+.+..++.+ .|+..|..+
T Consensus 153 l------~G~fa~~~~d~--~~~~~l~~~RD~-------~PL~~~~~~-------------------------------- 185 (215)
T cd00714 153 L------EGAYALAVISK--DEPDEIVAARNG-------SPLVIGIGD-------------------------------- 185 (215)
T ss_pred h------ccceEEEEEEe--CCCCEEEEEECC-------CCcEEEEcC--------------------------------
Confidence 6 99999999987 777778777664 677766531
Q ss_pred cccccccccccccccccCCCCCCCCCCCCCCCCCCcccCCccCCCceEEEecChHHHHhccCceEEeccCcEEE
Q psy1919 322 FQSTSIDELKCVWTQHHRPHGRSETMPMLPRNDSTSEFQPLEDKQVEYFFASDASAVIEHTNRVIFLEDDDVAA 395 (737)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sd~~ail~~t~~vi~l~~~elA~ 395 (737)
+.++|||+..||..++.+++.|+|+|++.
T Consensus 186 ---------------------------------------------~~~~~aSE~~al~~~~~~~~~~~~~~~~~ 214 (215)
T cd00714 186 ---------------------------------------------GENFVASDAPALLEHTRRVIYLEDGDIAV 214 (215)
T ss_pred ---------------------------------------------CeEEEEECHHHHHHhcCEEEEECCCCEEe
Confidence 47999999999999999999999999975
No 22
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.87 E-value=6.4e-22 Score=221.69 Aligned_cols=192 Identities=19% Similarity=0.191 Sum_probs=146.8
Q ss_pred ccEEEEcCCCceEEEEccCCchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeC-CCCCEEEEE
Q psy1919 2 KCIALDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSD-IDQTFCVVH 80 (737)
Q Consensus 2 ~gIa~~~~~~~~i~~~K~~G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~-~~~~~avvh 80 (737)
-||++. ++. +.++|+.|+|+++++.. .+. .+.|+++||||||||+|. ..|+|||... ++++++|||
T Consensus 34 aGIa~~--~~~-~~~~K~~Glv~~vf~~~-------~~~-~l~g~~~IGH~R~sT~G~--~~~~QP~~~~~~~g~ialvh 100 (442)
T PRK08341 34 AGISVW--RHR-IRTVKGHGLVSEVFKGG-------SLS-RLKSNLAIGHVRYSTSGS--LSEVQPLEVECCGYKIAIAH 100 (442)
T ss_pred ceEEEE--CCc-EEEEecCCchhhhhccc-------ccc-cCCCCEEEEEeeccccCC--CcCcCCEEeecCCCCEEEEE
Confidence 489997 343 99999999999999642 233 578999999999999995 4689999754 568899999
Q ss_pred cceecchHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCccccccccccceEEeccCcccccccceEEEeecCcccccccC
Q psy1919 81 NGIVTNYKELKAFLTNKDHRPHGRSETMPMLPRNDSTSEFQPLEDKQVEYFFASDASAVIEHTNRVIFLERFDRGNCNCQ 160 (737)
Q Consensus 81 NG~I~N~~~Lr~~L~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~l~~~~~~~~~~~ 160 (737)
||+|+||.+||++|+++|+ -|.|++|+ |
T Consensus 101 NG~I~N~~eLr~~L~~~G~-------------------------------~F~s~sDt------E--------------- 128 (442)
T PRK08341 101 NGTLTNFLPLRRKYESRGV-------------------------------KFRSSVDT------E--------------- 128 (442)
T ss_pred EEEEECHHHHHHHHHHcCC-------------------------------ccCCCCHH------H---------------
Confidence 9999999999999999999 89999999 8
Q ss_pred ceeeeCcchhhhhcccchHhHHHHHHHhhcCCCCCCCCCCccccccccCCcceeeecCcceeeecccCCCCCCCcceeee
Q psy1919 161 SLTVPKSKKERRQDRNKSAVLRTNLWDILLGLSSSWAGIEPRGLIEGTDDDVAAVKDGSLSIHRLRRSLDDPHGREITIL 240 (737)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~l~i~~~~~~~~~~~~r~~~~~ 240 (737)
+|++ |+.+.+...+ +..+++.. +..
T Consensus 129 --VI~~--------------li~~~~~~~~---------~~~~ai~~------------------------------~~~ 153 (442)
T PRK08341 129 --LIGI--------------SFLWHYSETG---------DEFEAMRE------------------------------VFN 153 (442)
T ss_pred --HHHH--------------HHHHHHHhcC---------CHHHHHHH------------------------------HHH
Confidence 6655 5555443211 11122222 444
Q ss_pred ehhhhhhcccCceEEEEEeeccCchhhhHhhcCccccCCCceEEecccccccccccccccCCCcccccCccccccccccc
Q psy1919 241 KLEIQEIMKGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKRKIRPKCIVVKLCPNMVDRRGEEVNLLCRGSV 320 (737)
Q Consensus 241 ~~~~~~~~kg~y~~~m~keI~eqp~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (737)
++ +|.|+..++.. +.++.+++ +.+.+|+.+|.+
T Consensus 154 ~l------~G~yal~i~~~-----~~l~a~RD----~~GirPL~~G~~-------------------------------- 186 (442)
T PRK08341 154 EV------KGAYSVAILFD-----GKIIVARD----PVGFRPLSYGEG-------------------------------- 186 (442)
T ss_pred hc------cCceEEEEEEC-----CEEEEEEc----CCCceEEEEEEC--------------------------------
Confidence 56 99999998754 45555444 345677777752
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCCCCCCcccCCccCCCceEEEecChHHHHhccCceEEeccCcEEEEECCc
Q psy1919 321 RFQSTSIDELKCVWTQHHRPHGRSETMPMLPRNDSTSEFQPLEDKQVEYFFASDASAVIEHTNRVIFLEDDDVAAVKDGS 400 (737)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sd~~ail~~t~~vi~l~~~elA~~~~s~ 400 (737)
+.+||||+..||....+.+..+..||++.++.++
T Consensus 187 ----------------------------------------------~~~~~ASE~~Al~~~~~~v~~l~PGeiv~i~~~g 220 (442)
T PRK08341 187 ----------------------------------------------DGHYFASEDSALRMFVNEIRDVFPGEVFVVSEGE 220 (442)
T ss_pred ----------------------------------------------CEEEEEeCcHHHHhhCCeEEEeCCCEEEEEECCc
Confidence 2489999999999999999999999999999876
Q ss_pred eEEEEc
Q psy1919 401 LSIHRL 406 (737)
Q Consensus 401 ~tI~r~ 406 (737)
+...++
T Consensus 221 ~~~~~~ 226 (442)
T PRK08341 221 VESKVL 226 (442)
T ss_pred eEEEee
Confidence 665554
No 23
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.86 E-value=5.6e-22 Score=223.51 Aligned_cols=88 Identities=25% Similarity=0.329 Sum_probs=76.5
Q ss_pred ccEEEEcCCCceEEEEccCCchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeee-CCCCCEEEEE
Q psy1919 2 KCIALDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRS-DIDQTFCVVH 80 (737)
Q Consensus 2 ~gIa~~~~~~~~i~~~K~~G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~-~~~~~~avvh 80 (737)
-||++. ++..+.++|+.|.|+++++. ..+. .+.|++|||||||||+|.++..|+|||.. +.+++++|||
T Consensus 42 aGia~~--~~~~~~~~k~~Glv~~vf~~-------~~l~-~l~G~~gIGH~RysT~G~~~~~n~QP~~~~~~~g~ialvh 111 (475)
T PRK07631 42 AGIVVT--DGGKLSAHKGLGLVTEVFQN-------GELD-ALKGKAAIGHVRYATAGGGGYENVQPLLFRSQTGSLALAH 111 (475)
T ss_pred CeEEEE--cCCEEEEEEcccccchhhch-------hhhh-ccCCCEEEEEeeccccCCCCcCCcCCeEeEcCCCCEEEEE
Confidence 489986 45679999999999999853 2233 57899999999999999999999999964 3678899999
Q ss_pred cceecchHHHHHHHhcCCC
Q psy1919 81 NGIVTNYKELKAFLTNKDH 99 (737)
Q Consensus 81 NG~I~N~~~Lr~~L~~~G~ 99 (737)
||+|+||.+||++|+++|+
T Consensus 112 NG~I~N~~eLr~~L~~~G~ 130 (475)
T PRK07631 112 NGNLVNATQLKLQLENQGS 130 (475)
T ss_pred EEEEECHHHHHHHHHhCCC
Confidence 9999999999999999999
No 24
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.86 E-value=7e-22 Score=223.75 Aligned_cols=88 Identities=27% Similarity=0.356 Sum_probs=76.8
Q ss_pred ccEEEEcCCCceEEEEccCCchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeC-CCCCEEEEE
Q psy1919 2 KCIALDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSD-IDQTFCVVH 80 (737)
Q Consensus 2 ~gIa~~~~~~~~i~~~K~~G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~-~~~~~avvh 80 (737)
-||++. ++.++.++|++|+|+++++. ..+. .+.|+++||||||||+|.++..|+|||..+ ..++++|||
T Consensus 65 aGIa~~--~~~~~~~~K~~Glv~~vf~~-------~~l~-~l~G~i~IGHvRysT~G~~~~~naQP~~~~~~~g~ialvh 134 (500)
T PRK07349 65 AGIATF--EGDKVHLHKDMGLVSQVFDE-------DILE-ELPGDLAVGHTRYSTTGSSRKANAQPAVLETRLGPLALAH 134 (500)
T ss_pred ceEEEE--eCCEEEEEecCcchhhhcch-------hhhh-cCCCCEEEEEeecccCCCCCccCCCCeEeecCCCCEEEEE
Confidence 489997 56679999999999999853 1233 578999999999999999888999999754 467899999
Q ss_pred cceecchHHHHHHHhcCCC
Q psy1919 81 NGIVTNYKELKAFLTNKDH 99 (737)
Q Consensus 81 NG~I~N~~~Lr~~L~~~G~ 99 (737)
||+|+||.+||++|+++|+
T Consensus 135 NG~I~N~~eLr~~L~~~G~ 153 (500)
T PRK07349 135 NGNLVNTVELREELLARGC 153 (500)
T ss_pred EEEEeCHHHHHHHHHhCCC
Confidence 9999999999999999999
No 25
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.86 E-value=7.6e-22 Score=222.66 Aligned_cols=88 Identities=26% Similarity=0.328 Sum_probs=76.1
Q ss_pred ccEEEEcCCCceEEEEccCCchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeC-CCCCEEEEE
Q psy1919 2 KCIALDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSD-IDQTFCVVH 80 (737)
Q Consensus 2 ~gIa~~~~~~~~i~~~K~~G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~-~~~~~avvh 80 (737)
-||++. ++..+.++|+.|+|+++++. ..+. .+.|++|||||||||+|.++..|+|||... ..++++|||
T Consensus 42 aGia~~--d~~~~~~~k~~GlV~~vf~~-------~~l~-~l~g~~~IGHvRyaT~G~~~~~naqP~~~~~~~g~~alvh 111 (471)
T PRK06781 42 AGIVVN--NGEKIVGHKGLGLISEVFSR-------GELE-GLNGKSAIGHVRYATAGGSEVANVQPLLFRFSDHSMALAH 111 (471)
T ss_pred ceEEEE--eCCEEEEEecCcchhhhcch-------hhHh-cCCCCEEEEEeEcccCCCCCcCCCCCeEEecCCCCEEEEE
Confidence 489986 45679999999999999863 2233 578999999999999999888999999653 467899999
Q ss_pred cceecchHHHHHHHhcCCC
Q psy1919 81 NGIVTNYKELKAFLTNKDH 99 (737)
Q Consensus 81 NG~I~N~~~Lr~~L~~~G~ 99 (737)
||+|+||.+||++|+++|+
T Consensus 112 NG~I~N~~eLr~~L~~~G~ 130 (471)
T PRK06781 112 NGNLINAKMLRRELEAEGS 130 (471)
T ss_pred EEEEcCHHHHHHHHHhCCC
Confidence 9999999999999999999
No 26
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=99.86 E-value=8.6e-22 Score=231.63 Aligned_cols=220 Identities=16% Similarity=0.194 Sum_probs=163.1
Q ss_pred hHHHHhccCceEEeccCcEEEEEC-CceEEEEccccCCCCCCcccEEeehhHHHHhcC--Cc-----------hHHHHHH
Q psy1919 375 ASAVIEHTNRVIFLEDDDVAAVKD-GSLSIHRLRRSLDDPHGREITILKLEIQEIMKG--NY-----------SYFMQKE 440 (737)
Q Consensus 375 ~~ail~~t~~vi~l~~~elA~~~~-s~~tI~r~ckk~g~~~~~~~~~lk~~~~~~~k~--~y-----------~~~M~kE 440 (737)
+.+|++|++++..|++.|||..++ |++||.|||||+|++ +|.+||..+...... .. ...+.+.
T Consensus 362 A~yIl~n~~~v~~~si~eLA~~~~vS~aTV~Rf~kkLGf~---Gf~efK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (638)
T PRK14101 362 ADLALNHPRSIINDPIVDIARKADVSQPTVIRFCRSLGCQ---GLSDFKLKLATGLTGTIPMSHSQVHLGDTATDFGAKV 438 (638)
T ss_pred HHHHHhCHHHHHhccHHHHHHHhCCCHHHHHHHHHHhCCC---CHHHHHHHHHHHhhhccccccccCCCCCCHHHHHHHH
Confidence 678999999999999999999998 999999999999997 555666555532110 00 1111122
Q ss_pred HHcChHHHHHHHhccccccccccccccccchhHHHcCCCeEEEEecchhHHHHHHHHHHHHHhcCCcEEEecccccc-cc
Q psy1919 441 IFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFL-DR 519 (737)
Q Consensus 441 I~EQP~~l~~~l~~~i~~~~~~i~l~~l~~~~~~L~~akrI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~-~~ 519 (737)
+....+.+.+++ ..++.+.++++++.|.++++|+|+|+|+|+.+|..++++|.++ ++++.......+. ..
T Consensus 439 ~~~~~~~i~~t~--------~~id~~~l~~aa~~L~~a~rI~i~G~G~S~~~A~~~~~~l~~l-g~~~~~~~d~~~~~~~ 509 (638)
T PRK14101 439 LDNTVSAILQLR--------EHLNFEHVEQAIDILNNARRIEFYGLGNSNIVAQDAHYKFFRF-GIPTIAYGDLYMQAAS 509 (638)
T ss_pred HHHHHHHHHHHH--------HhcCHHHHHHHHHHHhcCCEEEEEEccHHHHHHHHHHHHHhcC-CceEEEcCCHHHHHHH
Confidence 222222333322 2344567888999999999999999999999999999999987 6777765443332 22
Q ss_pred CCCCCCCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCCCC-ccccchhHHHHHHHHHH
Q psy1919 520 NTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE-IGVASTKAYTSQFISLV 598 (737)
Q Consensus 520 ~~~l~~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E-~~vasTksftsql~~L~ 598 (737)
...++++|++|+||+||+|++++++++.||++|++||+||+ .+|||+++||++|.+..... .+..++.+..+|++++.
T Consensus 510 ~~~l~~~DvvI~iS~sG~t~e~i~~~~~Ak~~Ga~vIaIT~-~~spLa~~aD~~L~~~~~~~~~s~~~~~s~~~~l~lid 588 (638)
T PRK14101 510 AALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITS-SNTPLAKRATVALETDHIEMRESQLSMISRILHLVMID 588 (638)
T ss_pred HhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEcC-CCChhHhhCCEEEEcCCccchhccccHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999999999 48999999999998865322 22334455666776666
Q ss_pred HHHHHHhhh
Q psy1919 599 MFALVMCED 607 (737)
Q Consensus 599 lLal~la~~ 607 (737)
+|...+...
T Consensus 589 ~L~~~l~~~ 597 (638)
T PRK14101 589 ILAVGVAIR 597 (638)
T ss_pred HHHHHHHHh
Confidence 666655544
No 27
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=99.85 E-value=7.7e-21 Score=177.51 Aligned_cols=125 Identities=50% Similarity=0.780 Sum_probs=114.7
Q ss_pred eEEEEecchhHHHHHHHHHHHHHhcCCcEEEeccccccccCCCCCCCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEe
Q psy1919 480 RLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVT 559 (737)
Q Consensus 480 rI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~~~~~~l~~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaIT 559 (737)
+|+|+|+|+|+++|..++++|.+++++++.+..+.++.+....++++|++|++|+||+|++++++++.||++|+++|+||
T Consensus 1 ~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT 80 (126)
T cd05008 1 RILIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPLLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAIT 80 (126)
T ss_pred CEEEEEccHHHHHHHHHHHHHHHhcCCceEEEehhHhhhcCCCCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEE
Confidence 59999999999999999999999977888887777776666668899999999999999999999999999999999999
Q ss_pred cCCCCccccccceEEEcCCCCCccccchhHHHHHHHHHHHHHHHH
Q psy1919 560 NTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVM 604 (737)
Q Consensus 560 n~~~S~La~~AD~~L~~~ag~E~~vasTksftsql~~L~lLal~l 604 (737)
++++|||++.||++|.++.++|.....|++|++++..++++++.+
T Consensus 81 ~~~~s~la~~ad~~l~~~~~~e~~~~~~~~~~~~~~~l~l~~~~~ 125 (126)
T cd05008 81 NVVGSTLAREADYVLYLRAGPEISVAATKAFTSQLLALLLLALAL 125 (126)
T ss_pred CCCCChHHHhCCEEEEecCCCcceechhhhHHHHHHHHHHHHHHh
Confidence 999999999999999999888887788899999999999988764
No 28
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.85 E-value=1.5e-21 Score=219.57 Aligned_cols=88 Identities=26% Similarity=0.402 Sum_probs=76.1
Q ss_pred ccEEEEcCCCceEEEEccCCchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeC-CCCCEEEEE
Q psy1919 2 KCIALDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSD-IDQTFCVVH 80 (737)
Q Consensus 2 ~gIa~~~~~~~~i~~~K~~G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~-~~~~~avvh 80 (737)
-||++. ++.++.++|+.|+|+++++. ..+. .+.+++|||||||||+|.++..|+|||..+ +.++++|||
T Consensus 32 aGia~~--~~~~~~~~k~~G~v~~~f~~-------~~~~-~~~g~~~iGH~R~at~g~~~~~naqP~~~~~~~g~~~lvh 101 (445)
T PRK08525 32 SGISVS--NGKKIKTIKGRGLVTQVFNE-------DNLK-TLKGEIAIGHNRYSTAGNDSILDAQPVFARYDLGEIAIVH 101 (445)
T ss_pred ceEEEE--eCCEEEEEEcCcchhhccch-------hhhh-ccCCcEEEeecccccCCCCCCCCCCCeEeecCCCCEEEEE
Confidence 489997 45679999999999999743 1222 478899999999999999888999999753 578899999
Q ss_pred cceecchHHHHHHHhcCCC
Q psy1919 81 NGIVTNYKELKAFLTNKDH 99 (737)
Q Consensus 81 NG~I~N~~~Lr~~L~~~G~ 99 (737)
||+|+||.+||++|.++|+
T Consensus 102 NG~I~N~~eLr~~L~~~G~ 120 (445)
T PRK08525 102 NGNLVNKKEVRSRLIQDGA 120 (445)
T ss_pred EEEEECHHHHHHHHHhcCC
Confidence 9999999999999999999
No 29
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.85 E-value=3.8e-21 Score=226.18 Aligned_cols=157 Identities=17% Similarity=0.149 Sum_probs=120.4
Q ss_pred HHHHHHcChHHHHHHHhccccccccccccccccchhHHHcCCCeEEEEecchhHHHHHHHHHHHHHhcCCcEEEeccccc
Q psy1919 437 MQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDF 516 (737)
Q Consensus 437 M~kEI~EQP~~l~~~l~~~i~~~~~~i~l~~l~~~~~~L~~akrI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~ 516 (737)
+.+++.+-|+.+.+++... .+.++++++.+.++++|+|+|.|.++.+|+.++.+|.+++.+++....+.||
T Consensus 464 ~~~~l~~lp~~~~~~l~~~---------~~~~~~~a~~l~~a~~i~~lGrG~~~~iA~E~ALKLkEi~~i~ae~~~~~E~ 534 (640)
T PTZ00295 464 LINSLHRLPTYIGMTLKSC---------EEQCKRIAEKLKNAKSMFILGKGLGYPIALEGALKIKEITYIHAEGFSGGAL 534 (640)
T ss_pred HHHHHHHHHHHHHHHHHHh---------HHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHHHhhhhhhhcChHHh
Confidence 3345555666666665421 1245677888999999999999999999999999999998889888888888
Q ss_pred cccCC-CCC--CCCeEEEEcCCCC-cHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCCCCccccchhHHHH
Q psy1919 517 LDRNT-PVF--RDDVCFFISQSGE-TADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTS 592 (737)
Q Consensus 517 ~~~~~-~l~--~~dlvI~ISqSGe-T~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E~~vasTksfts 592 (737)
.|.+. .++ +++++|+++.+|+ +..++.+++.+|++|+++|+||+.. +++.+.+|.++.++.. +.. ..+ .
T Consensus 535 ~HGp~ali~~~~~~~VI~i~~~~~~~~~~~~~~~~lk~rga~vi~It~~~-~~l~~~ad~~i~ip~~-~~l----~p~-~ 607 (640)
T PTZ00295 535 KHGPFALIDKEKNTPVILIILDDEHKELMINAAEQVKARGAYIIVITDDE-DLVKDFADEIILIPSN-GPL----TAL-L 607 (640)
T ss_pred hhhHHHHhcCCCCCeEEEEEcCCccHHHHHHHHHHHHHcCCEEEEEecCC-ccccccCCeEEEeCCc-ccc----hHH-H
Confidence 77643 344 6789999999998 6789999999999999999999985 5688999998888753 211 122 3
Q ss_pred HHHHHHHHHHHHhhhhc
Q psy1919 593 QFISLVMFALVMCEDRI 609 (737)
Q Consensus 593 ql~~L~lLal~la~~~~ 609 (737)
.+..+.+|+..++..++
T Consensus 608 ~~ip~Qllay~la~~~G 624 (640)
T PTZ00295 608 AVIPLQLLAYEIAILRG 624 (640)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 34556777777776554
No 30
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.84 E-value=5.1e-21 Score=217.24 Aligned_cols=88 Identities=33% Similarity=0.413 Sum_probs=76.2
Q ss_pred ccEEEEcCCCceEEEEccCCchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeC--CCCCEEEE
Q psy1919 2 KCIALDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSD--IDQTFCVV 79 (737)
Q Consensus 2 ~gIa~~~~~~~~i~~~K~~G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~--~~~~~avv 79 (737)
-||++. ++.++.++|+.|+|+++++. .++. .+.++++|||+||||+|.++..|+|||... +.++++||
T Consensus 55 aGIa~~--d~~~i~~~K~~Glv~~vf~d-------~~l~-~l~G~i~IGHvR~sT~G~~~~~naQP~~~~~~~~g~ialv 124 (510)
T PRK07847 55 AGIAVS--DGSQILVFKDLGLVSQVFDE-------QTLA-SLQGHVAIGHCRYSTTGASTWENAQPTFRATAAGGGVALG 124 (510)
T ss_pred ccEEEE--eCCEEEEEecCccHHHhhch-------hhhh-hcCCcEEEEeccCCcCCCCcccCCCCcCcccCCCCCEEEE
Confidence 489997 45679999999999999863 2333 578999999999999999888999999654 36889999
Q ss_pred EcceecchHHHHHHHhcCCC
Q psy1919 80 HNGIVTNYKELKAFLTNKDH 99 (737)
Q Consensus 80 hNG~I~N~~~Lr~~L~~~G~ 99 (737)
|||+|+||.+||++|+++|+
T Consensus 125 HNG~I~N~~eLr~~L~~~G~ 144 (510)
T PRK07847 125 HNGNLVNTAELAARARDRGL 144 (510)
T ss_pred EEEEEeCHHHHHHHHHhcCC
Confidence 99999999999999999987
No 31
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.83 E-value=1.6e-20 Score=212.46 Aligned_cols=88 Identities=25% Similarity=0.372 Sum_probs=76.8
Q ss_pred ccEEEEcCCCceEEEEccCCchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeC-CCCCEEEEE
Q psy1919 2 KCIALDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSD-IDQTFCVVH 80 (737)
Q Consensus 2 ~gIa~~~~~~~~i~~~K~~G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~-~~~~~avvh 80 (737)
.||++. ++..+.++|+.|+|+++++. .++. .+.|+++|||+||||+|.++..|+|||..+ ..++++++|
T Consensus 47 aGIa~~--~~~~~~~~k~~G~v~~~f~~-------~~l~-~l~g~~~iGHvR~sT~G~~~~~n~qPf~~~~~~g~~alvh 116 (469)
T PRK05793 47 AGIAVS--DGEKIKVHKGMGLVSEVFSK-------EKLK-GLKGNSAIGHVRYSTTGASDLDNAQPLVANYKLGSIAIAH 116 (469)
T ss_pred ceEEEE--eCCEEEEEecccccccccch-------hhHh-ccCCcEEEEEeecccCCCCCCCCCCCeEeecCCCCEEEEE
Confidence 489987 56679999999999999853 2333 578999999999999999889999999764 467899999
Q ss_pred cceecchHHHHHHHhcCCC
Q psy1919 81 NGIVTNYKELKAFLTNKDH 99 (737)
Q Consensus 81 NG~I~N~~~Lr~~L~~~G~ 99 (737)
||+|+||.+||++|+.+|+
T Consensus 117 NG~I~N~~eLr~~L~~~g~ 135 (469)
T PRK05793 117 NGNLVNADVIRELLEDGGR 135 (469)
T ss_pred EEEEeCHHHHHHHHHhcCC
Confidence 9999999999999999999
No 32
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.82 E-value=4.7e-20 Score=193.17 Aligned_cols=87 Identities=28% Similarity=0.323 Sum_probs=73.5
Q ss_pred ccEEEEcC-------CCceEEEEccCCchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeCCCC
Q psy1919 2 KCIALDAA-------DGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQ 74 (737)
Q Consensus 2 ~gIa~~~~-------~~~~i~~~K~~G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~~~~ 74 (737)
-||++... .+.++.++|+.|++.++++.. ++. .+.++++|||+||||+|.++..|+|||.. +
T Consensus 35 aGia~~~~~~~~~~s~~~~~~~~K~~G~~~~v~~~~-------~~~-~~~~~~~igH~R~aT~g~~~~~n~qP~~~---~ 103 (249)
T cd01907 35 AGFALYGDPDAFVYSSGKDMEVFKGVGYPEDIARRY-------DLE-EYKGYHWIAHTRQPTNSAVWWYGAHPFSI---G 103 (249)
T ss_pred ceEEEEcCCCeEEEecCCCeEEEeeccCHHHHHhhc-------Cch-heEEEEEEEEEeccCCCCCCccCCCCeec---C
Confidence 37888632 245799999999999998642 233 56789999999999999888889999963 3
Q ss_pred CEEEEEcceecchHHHHHHHhcCCC
Q psy1919 75 TFCVVHNGIVTNYKELKAFLTNKDH 99 (737)
Q Consensus 75 ~~avvhNG~I~N~~~Lr~~L~~~G~ 99 (737)
++++||||+|+||.+||++|+++|+
T Consensus 104 ~~~lvhNG~I~N~~~lr~~L~~~g~ 128 (249)
T cd01907 104 DIAVVHNGEISNYGSNREYLERFGY 128 (249)
T ss_pred CEEEEeCCeecCHHHHHHHHHhcCC
Confidence 7999999999999999999999999
No 33
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.81 E-value=6.2e-20 Score=207.78 Aligned_cols=89 Identities=21% Similarity=0.234 Sum_probs=77.1
Q ss_pred ccEEEEcCCCceEEEEccCCchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeC-CCCCEEEEE
Q psy1919 2 KCIALDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSD-IDQTFCVVH 80 (737)
Q Consensus 2 ~gIa~~~~~~~~i~~~K~~G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~-~~~~~avvh 80 (737)
-||++. ++.++.++|+.|+|+++++.+. .+. .+.|+++||||||||+|.++..|+|||..+ ..++++|||
T Consensus 52 aGia~~--~~~~~~~~k~~Glv~~vf~~~~------~l~-~l~G~~~IGH~R~sT~G~~~~~n~QP~~~~~~~g~~alvh 122 (479)
T PRK09123 52 AGIVSF--DGERFHSERRMGLVGDHFTDAD------VIA-RLPGNRAIGHVRYSTTGETILRNVQPLFAELEFGGLAIAH 122 (479)
T ss_pred CEEEEE--ECCEEEEEecCcchhhhhhhhh------hhh-ccCCCEEEEEEecccCCCCCcCCCCCceeecCCCCEEEEE
Confidence 489986 4567999999999999996432 123 578999999999999999889999999754 578899999
Q ss_pred cceecchHHHHHHHhcCCC
Q psy1919 81 NGIVTNYKELKAFLTNKDH 99 (737)
Q Consensus 81 NG~I~N~~~Lr~~L~~~G~ 99 (737)
||+|+||.+||++|.++|+
T Consensus 123 NG~I~N~~eLr~~L~~~G~ 141 (479)
T PRK09123 123 NGNLTNALTLRRELIRRGA 141 (479)
T ss_pred EEEEeCHHHHHHHHHhCCC
Confidence 9999999999999999999
No 34
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=99.81 E-value=3.4e-18 Score=186.64 Aligned_cols=241 Identities=20% Similarity=0.211 Sum_probs=173.8
Q ss_pred HHHHHHHcChHHHHHHHhccccccccccccccccchhHHHcCCCeEEEEecchhHHHHHHHHHHHHHhcCCcEEEecccc
Q psy1919 436 FMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASD 515 (737)
Q Consensus 436 ~M~kEI~EQP~~l~~~l~~~i~~~~~~i~l~~l~~~~~~L~~akrI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase 515 (737)
.|++++.+.|+.+++.+..... ..+...+.++++|+++|+|+|+.+|..+++++....++++.......
T Consensus 3 ~m~~~~~~~~~q~~~a~~~~~~-----------~~~~~~~~~~~~I~i~G~GgS~~~a~~~~~~l~~~~~~~~~~~~~~~ 71 (337)
T PRK08674 3 GMLEEYLNWPEQFEEALEIAIS-----------LDLEEDLEKIDNIVISGMGGSGIGGDLLRILLFDELKVPVFVNRDYT 71 (337)
T ss_pred hHHHHHHhHHHHHHHHHHhhhc-----------cchhhhhcCCCEEEEEECcHHHHHHHHHHHHHHhcCCCcEEEeCccc
Confidence 4888889999999987743111 11223456899999999999999999999988665578877654321
Q ss_pred ccccCCCCCCCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccce----EEEcCCCCCccccchhHHH
Q psy1919 516 FLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHC----GIHINAGPEIGVASTKAYT 591 (737)
Q Consensus 516 ~~~~~~~l~~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~----~L~~~ag~E~~vasTksft 591 (737)
.+...+++|++|++|+||+|.+++++++.|+++|+++|+||+ +++|++.||. ++.++.+. +...++.
T Consensus 72 ---~~~~~~~~dlvI~iS~SG~T~e~~~a~~~a~~~ga~vIaIT~--~~~L~~~a~~~~~~~i~ip~~~----~~r~s~~ 142 (337)
T PRK08674 72 ---LPAFVDEKTLVIAVSYSGNTEETLSAVEQALKRGAKIIAITS--GGKLKEMAKEHGLPVIIVPGGY----QPRAALG 142 (337)
T ss_pred ---hhhcCCCCcEEEEEcCCCCCHHHHHHHHHHHHCCCeEEEECC--CchHHHHHHhcCCeEEEeCCCC----cchhhHH
Confidence 233457899999999999999999999999999999999997 5689999887 77776432 1222222
Q ss_pred HHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHcCCCeEEEEecCCCCHHHHHHHHH
Q psy1919 592 SQFISLVMFALVMCEDRISLQTRRNEIIKGLKVIHEQIREVL-QMDSEVQQLAKEMYEQKSMLLMGRGGYNYATCMEGAL 670 (737)
Q Consensus 592 sql~~L~lLal~la~~~~~~~~~~~~~~~~l~~l~~~i~~vl-~~~~~~~~lA~~l~~~~~~~~lG~GG~~y~~A~EgAL 670 (737)
..+..++.+.-.++.-. ....+++++++.++.+++.+.... ...+.++++|.++.....+++ |. |..++.|..++.
T Consensus 143 ~ll~~l~~~l~~~Gl~~-~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~A~~lA~~~~~~~pv~~-gs-~~~~~~a~~~~~ 219 (337)
T PRK08674 143 YLFTPLLKILEKLGLIP-DKSAEVLETKIVLSELAEGLKEKVPTLKNLAKRLAGKLYGRIPVIY-GS-GLTLAVAYRWKT 219 (337)
T ss_pred HHHHHHHHHHHHcCCCc-cchhhHHHHHHHHHHHHHhhCcCCCcccCHHHHHHHHHhCCCCEEE-eC-cccHHHHHHHHH
Confidence 22222221111111100 011256667777777766543322 235678899999887555555 77 999999999999
Q ss_pred HHHHhccccccccccccccccccccccCC
Q psy1919 671 KIKELTYMHSEGIMAGELKHGPLALIDNS 699 (737)
Q Consensus 671 KlkE~s~i~Ae~~~a~Ef~HGPialid~~ 699 (737)
.|.|.+++++..-...|..|+-+.+++.+
T Consensus 220 ~~~Ena~~~~~~~~~pe~~H~~~~~~~~~ 248 (337)
T PRK08674 220 QINENAKYPAFYNEIPELNHNEIVGYERP 248 (337)
T ss_pred HHHHhcCCccccccCCcccccceeeccCc
Confidence 99999999999999999999999988764
No 35
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.77 E-value=1.7e-18 Score=197.64 Aligned_cols=88 Identities=26% Similarity=0.348 Sum_probs=75.5
Q ss_pred ccEEEEcCCCceEEEEccCCchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeCCCCCEEEEEc
Q psy1919 2 KCIALDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHN 81 (737)
Q Consensus 2 ~gIa~~~~~~~~i~~~K~~G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~~~~~~avvhN 81 (737)
-||++. +++++.++|++|+|.++++. .++. .+.++++|||+||||+|.++..|+|||..+..+.++||||
T Consensus 32 aGi~~~--~~~~~~~~k~~Glv~~vf~~-------~~l~-~l~g~~~IGHvRysT~G~~~~~n~QP~~~~~~~g~alahN 101 (501)
T PRK09246 32 AGIVTI--DGNRFRLRKANGLVRDVFRT-------RHMR-RLQGNMGIGHVRYPTAGSSSSAEAQPFYVNSPYGITLAHN 101 (501)
T ss_pred eEEEEE--eCCEEEEEccCCccccccCc-------chHh-hCCCCEEEEEEcCCcCCCCCcccCCCEEEeCCCCEEEEEe
Confidence 489987 56789999999999999853 2344 5789999999999999998889999997665555999999
Q ss_pred ceecchHHHHHHHhcC-CC
Q psy1919 82 GIVTNYKELKAFLTNK-DH 99 (737)
Q Consensus 82 G~I~N~~~Lr~~L~~~-G~ 99 (737)
|+|+||.+||++|+++ |+
T Consensus 102 G~I~N~~eLr~~L~~~~~~ 120 (501)
T PRK09246 102 GNLTNAEELRKELFEKDRR 120 (501)
T ss_pred EEEcCHHHHHHHHHhcCCC
Confidence 9999999999999987 66
No 36
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=99.76 E-value=4.6e-18 Score=158.96 Aligned_cols=127 Identities=29% Similarity=0.404 Sum_probs=113.4
Q ss_pred HcCCCeEEEEecchhHHHHHHHHHHHHHhcCCcEEEecccccccc-CCCCCCCCeEEEEcCCCCcHHHHHHHHHHHHcCC
Q psy1919 475 IRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDR-NTPVFRDDVCFFISQSGETADSLMALRYCKARGA 553 (737)
Q Consensus 475 L~~akrI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~~~-~~~l~~~dlvI~ISqSGeT~etl~al~~AKe~Ga 553 (737)
|.++++|+|+|+|+|+.+|+.++++|.++++..+......++.+. ...++++|++|++|+||+|.+++++++.||++|+
T Consensus 2 i~~~~~i~i~G~G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~g~ 81 (131)
T PF01380_consen 2 IAKAKRIYIYGSGSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSGETRELIELLRFAKERGA 81 (131)
T ss_dssp HTTSSEEEEEESTHHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSSTTHHHHHHHHHHHHTTS
T ss_pred CCCCCEEEEEEcchHHHHHHHHHHHHHHhcCcceeccchHHHhhhhcccccccceeEeeeccccchhhhhhhHHHHhcCC
Confidence 578999999999999999999999999998777777777776554 4567899999999999999999999999999999
Q ss_pred eEEEEecCCCCccccccceEEEcCCCCCccccchhHHHHHHHHHHHHH
Q psy1919 554 LIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFA 601 (737)
Q Consensus 554 ~tIaITn~~~S~La~~AD~~L~~~ag~E~~vasTksftsql~~L~lLa 601 (737)
++|+||+..+|++++.||++|.++.+++...+.+.++++++.++.++.
T Consensus 82 ~vi~iT~~~~~~l~~~ad~~l~~~~~~~~~~~~~~s~~~~~~~~~~l~ 129 (131)
T PF01380_consen 82 PVILITSNSESPLARLADIVLYIPTGEESQSASTSSFSAQLSLLDALF 129 (131)
T ss_dssp EEEEEESSTTSHHHHHSSEEEEEESSCGSSSSHSHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCchhhhCCEEEEecCCCccccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888776678899999988777654
No 37
>PLN02440 amidophosphoribosyltransferase
Probab=99.75 E-value=4.6e-18 Score=193.07 Aligned_cols=88 Identities=31% Similarity=0.415 Sum_probs=76.0
Q ss_pred ccEEEEcCCCceEEEEccCCchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeC-CCCCEEEEE
Q psy1919 2 KCIALDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSD-IDQTFCVVH 80 (737)
Q Consensus 2 ~gIa~~~~~~~~i~~~K~~G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~-~~~~~avvh 80 (737)
.||++. ++..+..+|+.|.++++++. .++. .+.++++|||+||||+|.++..|+|||..+ ..++++++|
T Consensus 32 ~Gi~~~--d~~~~~~~k~~Glv~~vf~~-------~~l~-~l~g~~~IGHvRysT~G~~~~~n~QPf~~~~~~g~~~lah 101 (479)
T PLN02440 32 AGIVTV--DGNRLQSITGNGLVSDVFDE-------SKLD-QLPGDIAIGHVRYSTAGASSLKNVQPFVANYRFGSIGVAH 101 (479)
T ss_pred ceEEEE--cCCEEEEEecCCchhhhcch-------hhhh-ccCCcEEEEEEeccccCCCCccCCCCceeecCCCCEEEEE
Confidence 488887 55679999999999999843 2344 578999999999999998889999999754 457899999
Q ss_pred cceecchHHHHHHHhcCCC
Q psy1919 81 NGIVTNYKELKAFLTNKDH 99 (737)
Q Consensus 81 NG~I~N~~~Lr~~L~~~G~ 99 (737)
||+|+|+.+||++|+.+|+
T Consensus 102 NG~I~N~~eLr~~L~~~g~ 120 (479)
T PLN02440 102 NGNLVNYEELRAKLEENGS 120 (479)
T ss_pred EEEEeCHHHHHHHHHhcCC
Confidence 9999999999999999999
No 38
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.75 E-value=5.1e-18 Score=191.12 Aligned_cols=88 Identities=33% Similarity=0.442 Sum_probs=75.9
Q ss_pred ccEEEEcCCCceEEEEccCCchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeCCCCCEEEEEc
Q psy1919 2 KCIALDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHN 81 (737)
Q Consensus 2 ~gIa~~~~~~~~i~~~K~~G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~~~~~~avvhN 81 (737)
-||++. ++.++.++|++|+++++++. .++. .+.++++|||+||||+|..+..|+|||..+..+.+++|||
T Consensus 32 ~Gia~~--d~~~~~~~k~~glv~~v~~~-------~~l~-~l~g~~~IgHvR~aT~G~~~~~n~QPf~~~~~~g~alahN 101 (442)
T TIGR01134 32 AGIAVS--DGNKIRTHKGNGLVSDVFDE-------RHLE-RLKGNVGIGHVRYSTAGSSSLSNAQPFVVNSPGGIALAHN 101 (442)
T ss_pred eEEEEE--eCCEEEEEEcCCchhhhcch-------hhhh-cccCcEEEEEEEecCCCCCCccCCCCEEEeCCCCEEEEEE
Confidence 489987 56789999999999999843 2333 5788999999999999998899999997654445999999
Q ss_pred ceecchHHHHHHHhcCCC
Q psy1919 82 GIVTNYKELKAFLTNKDH 99 (737)
Q Consensus 82 G~I~N~~~Lr~~L~~~G~ 99 (737)
|+|+|+.+||++|..+|+
T Consensus 102 G~I~N~~eLr~~L~~~g~ 119 (442)
T TIGR01134 102 GNLVNAEELREELEEEGR 119 (442)
T ss_pred EEEcCHHHHHHHHHhcCC
Confidence 999999999999999998
No 39
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=99.74 E-value=2.9e-17 Score=153.75 Aligned_cols=121 Identities=26% Similarity=0.285 Sum_probs=102.3
Q ss_pred CeEEEEecchhHHHHHHHHHHHHHhcCCcEEEeccccccc-cCCCCCCCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEE
Q psy1919 479 RRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLD-RNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVG 557 (737)
Q Consensus 479 krI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~~-~~~~l~~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIa 557 (737)
.+|+++|+|+|+++|+.++++|.++ ++++....+.+... ....++++|++|++|+||+|++++++++.||++|+++|+
T Consensus 1 ~~I~i~G~G~S~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 1 GKVVVTGVGKSGHIARKIAATLSST-GTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred CeEEEEeCcHhHHHHHHHHHHhhcC-CCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 4799999999999999999999886 68877766555433 234568899999999999999999999999999999999
Q ss_pred EecCCCCccccccceEEEcCCCCCc---cccchhHHHHHHHHHHHH
Q psy1919 558 VTNTVGSSISRESHCGIHINAGPEI---GVASTKAYTSQFISLVMF 600 (737)
Q Consensus 558 ITn~~~S~La~~AD~~L~~~ag~E~---~vasTksftsql~~L~lL 600 (737)
||+.++|||++.||++|.++.+++. ....+.++++++.++.+|
T Consensus 80 iT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~~s~~~~~~~~d~l 125 (128)
T cd05014 80 ITGNPNSTLAKLSDVVLDLPVEEEACPLGLAPTTSTTAMLALGDAL 125 (128)
T ss_pred EeCCCCCchhhhCCEEEECCCCcccccCCCCchHHHHHHHHHHHHH
Confidence 9999999999999999999876652 445677888777766655
No 40
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=99.74 E-value=2e-17 Score=195.44 Aligned_cols=386 Identities=22% Similarity=0.269 Sum_probs=211.9
Q ss_pred cceEEeccCcccccccceEEEeecCcccccccCceeeeCcc--hhhhhcccchHhHHHHHHHhhcCCCCCCCCCCccccc
Q psy1919 128 VEYFFASDASAVIEHTNRVIFLERFDRGNCNCQSLTVPKSK--KERRQDRNKSAVLRTNLWDILLGLSSSWAGIEPRGLI 205 (737)
Q Consensus 128 ~~~~~~s~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (737)
+++|||||+.||..+|+++.+|++|++..++.+.+.+.+.+ |.|+++- .
T Consensus 239 ~~~~~aSe~~al~~~~~~~~~l~~gei~~i~~~~~~~~~~~~~~~~~~~~-----------------------~------ 289 (680)
T PLN02981 239 KEFFLASDASAVVEHTKRVLVIEDNEVVHLKDGGVGIYKFENEKGRGGGG-----------------------L------ 289 (680)
T ss_pred CcEEEEeCHHHHHHhcCEEEEECCCeEEEEECCeEEEEeCCCCccccccc-----------------------c------
Confidence 48999999999999999999999888887777776664300 0000000 0
Q ss_pred cccCCcceeeecCcceeeecccCCCCCCCcceeeeehhhhhhcccCceEEEEEeeccCchhhhHhhcCccccCCC----c
Q psy1919 206 EGTDDDVAAVKDGSLSIHRLRRSLDDPHGREITILKLEIQEIMKGNYSYFMQKEIFEQPESVVNTMRGRINFETN----S 281 (737)
Q Consensus 206 ~~~~~d~a~~~~~~l~i~~~~~~~~~~~~r~~~~~~~~~~~~~kg~y~~~m~keI~eqp~~~~~~~~g~~~~~~~----~ 281 (737)
.......|++...+++.+.+.||+|+|||+|||||||+.+.+++++|+...+. .
T Consensus 290 ----------------------~~~~~~~~~~~~~~~~~~~~~k~~y~~~m~kEI~EQP~~l~~~l~~r~~~~~~~~~~~ 347 (680)
T PLN02981 290 ----------------------SRPASVERALSTLEMEVEQIMKGNYDHYMQKEIHEQPESLTTTMRGRLIRGGSGKAKR 347 (680)
T ss_pred ----------------------ccccccccceEEeeCCHHHhccCCCCchHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 00012346778899999999999999999999999999999999988642211 2
Q ss_pred eEEecccccccccccccccCCCcccccCcccccc-ccccccccc------ccccccccccc----cccCCCCCCCCCCCC
Q psy1919 282 VILGGIKRKIRPKCIVVKLCPNMVDRRGEEVNLL-CRGSVRFQS------TSIDELKCVWT----QHHRPHGRSETMPML 350 (737)
Q Consensus 282 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~----~~~~~~~~~~~~~~~ 350 (737)
+.+..+.+. ++ .+ ..-.+|-+. |++|..... ..+..+++.+. ....+.-..+....+
T Consensus 348 ~~l~~l~~~-------~~----~l-~~~~~I~~~G~GsS~~aa~~a~~~l~kl~~i~v~~~~~sef~~~~~~~~~~~lvI 415 (680)
T PLN02981 348 VLLGGLKDH-------LK----TI-RRSRRIVFIGCGTSYNAALAARPILEELSGVPVTMELASDLLDRQGPIYREDTAV 415 (680)
T ss_pred cchHHHHHH-------HH----HH-hcCCEEEEEEecHHHHHHHHHHHHHHHHhCCCEEEecchHHHhccccCCCCCeEE
Confidence 222222210 00 00 001244444 666554210 00111111100 000000000000112
Q ss_pred CCCCCCcccCCccCCCceEEEecChHHHHhccCceEEeccCcEEEEEC-CceEEEEcccc-----CCCC----CCcccEE
Q psy1919 351 PRNDSTSEFQPLEDKQVEYFFASDASAVIEHTNRVIFLEDDDVAAVKD-GSLSIHRLRRS-----LDDP----HGREITI 420 (737)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~sd~~ail~~t~~vi~l~~~elA~~~~-s~~tI~r~ckk-----~g~~----~~~~~~~ 420 (737)
-+++| ++ +.|+...++..++.- -.+..+|. .+..+.+.|.. .|.+ ..+.|..
T Consensus 416 ~ISqS-----------Ge---T~eti~Al~~Ak~~G----a~~IaITn~~~S~La~~ad~~i~~~~g~E~~~a~Tksfts 477 (680)
T PLN02981 416 FVSQS-----------GE---TADTLRALEYAKENG----ALCVGITNTVGSAISRGTHCGVHINAGAEIGVASTKAYTS 477 (680)
T ss_pred EEeCC-----------cC---CHHHHHHHHHHHHCC----CcEEEEECCCCChhHhccCeeEEecCcccccccccccHHH
Confidence 22222 12 334555555544320 11122221 11222221110 0111 1111111
Q ss_pred e--ehhHHH--HhcC--C-ch--HHHHHHHHcChHHHHHHHhccccccccccccccccchhHHHcCCCeEEEEecchhHH
Q psy1919 421 L--KLEIQE--IMKG--N-YS--YFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGCGTSYH 491 (737)
Q Consensus 421 l--k~~~~~--~~k~--~-y~--~~M~kEI~EQP~~l~~~l~~~i~~~~~~i~l~~l~~~~~~L~~akrI~ivG~GsS~~ 491 (737)
. -+.+-. +... . .. .-..+++...|+.+.+.+... +.+.++++.+...++++++|.|..|.
T Consensus 478 ~~~~l~llal~l~~~~~~~~~~~~~~~~~l~~lp~~l~~vl~~~----------~~~~~~a~~l~~~~~~~~lG~G~~yg 547 (680)
T PLN02981 478 QIVAMTMLALALGEDSISSRSRREAIIDGLFDLPNKVREVLKLD----------QEMKELAELLIDEQSLLVFGRGYNYA 547 (680)
T ss_pred HHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhcc----------HHHHHHHHHhhCCCcEEEEeCCCCHH
Confidence 0 000000 1110 0 11 122345555566666555310 23556777788999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEeccccccccCC-CCCCCCeEEEEcCCCCc-HHHHHHHHHHHHcCCeEEEEecCCCCcc--c
Q psy1919 492 SAVATRQLLEELTELPVMVELASDFLDRNT-PVFRDDVCFFISQSGET-ADSLMALRYCKARGALIVGVTNTVGSSI--S 567 (737)
Q Consensus 492 aA~~~~~~l~~~~gi~v~~~~ase~~~~~~-~l~~~dlvI~ISqSGeT-~etl~al~~AKe~Ga~tIaITn~~~S~L--a 567 (737)
+|+.++.+|+++..+++....+.||.|.+. .+++++.+|++.-.+++ ..+.+.++.++++|+++++|++..+... .
T Consensus 548 ~A~EgALKlkE~s~i~a~gy~~~Ef~HGP~ali~~~t~vi~l~~~~~~~~~~~~~~~el~~~g~~vi~I~~~~~~~~~~~ 627 (680)
T PLN02981 548 TALEGALKVKEVALMHSEGILAGEMKHGPLALVDETLPIIVIATRDACFSKQQSVIQQLRARKGRLIVICSKGDASSVCP 627 (680)
T ss_pred HHHHHHHHHHHHHHhhhccEEhhhcccChHHhccCCceEEEEEcCCchHHHHHHHHHHHHHcCCEEEEEEcCCcchhccc
Confidence 999999999999999999888899988864 46778888877766664 5577999999999999999998644211 1
Q ss_pred cccceEEEcCCCCCccccchhHHHHHHHHHHHHHHHHhhhhc
Q psy1919 568 RESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRI 609 (737)
Q Consensus 568 ~~AD~~L~~~ag~E~~vasTksftsql~~L~lLal~la~~~~ 609 (737)
...|.++.++..++. ...+. .++.+.+||..++..++
T Consensus 628 ~~~~~~i~~p~~~~~----l~pll-~iiplQllAy~~A~~~G 664 (680)
T PLN02981 628 SGGCRVIEVPQVEDC----LQPVI-NIVPLQLLAYHLTVLRG 664 (680)
T ss_pred cCCCeEEEEeccchH----HhHHH-HHHHHHHHHHHHHHHhC
Confidence 233555655543321 12232 23345677777665544
No 41
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.73 E-value=1.1e-17 Score=182.78 Aligned_cols=89 Identities=29% Similarity=0.377 Sum_probs=77.8
Q ss_pred ccEEEEcCCCceEEEEccCCchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeC-CCCCEEEEE
Q psy1919 2 KCIALDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSD-IDQTFCVVH 80 (737)
Q Consensus 2 ~gIa~~~~~~~~i~~~K~~G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~-~~~~~avvh 80 (737)
-||++. ++.++..+|+.|+|.++|+. .++...+.|++||||+||+|.|..+..|+|||..+ ..+.++|+|
T Consensus 37 AGI~~~--dg~~~~~~K~~GLV~dvF~~-------~~~~~~l~G~~~IGHvRYsTaG~s~~~naQP~~~~~~~g~ialaH 107 (470)
T COG0034 37 AGIAVA--DGKRFHTHKGMGLVSDVFNE-------RDLLRKLQGNVGIGHVRYSTAGSSSIENAQPFYVNSPGGGIALAH 107 (470)
T ss_pred ccEEEE--cCceEEEEecCccchhhcCc-------hhhhhhccCcceeeEeeecCCCCcccccccceEEecCCCcEEEEe
Confidence 489998 77789999999999999953 22221366789999999999999999999999877 566899999
Q ss_pred cceecchHHHHHHHhcCCC
Q psy1919 81 NGIVTNYKELKAFLTNKDH 99 (737)
Q Consensus 81 NG~I~N~~~Lr~~L~~~G~ 99 (737)
||+|.|..+||++|.++|+
T Consensus 108 NGnl~N~~~Lr~~l~~~g~ 126 (470)
T COG0034 108 NGNLVNAEELRRELEEEGA 126 (470)
T ss_pred cCcccCHHHHHHHHHhcCc
Confidence 9999999999999999999
No 42
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=99.73 E-value=1.4e-16 Score=158.61 Aligned_cols=140 Identities=24% Similarity=0.195 Sum_probs=113.2
Q ss_pred ccccccchhHHHcCCCeEEEEecchhHHHHHHHHHHHHHhcCCcEEEeccccccccCCCCCCCCeEEEEcCCCCcHHHHH
Q psy1919 464 ILGGIKDYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLM 543 (737)
Q Consensus 464 ~l~~l~~~~~~L~~akrI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~~~~~~l~~~dlvI~ISqSGeT~etl~ 543 (737)
+.+.++++++.|.++++|+++|+|+|+.+|..+.++|.++ |+++...... ....++++|++|+||+||+|+++++
T Consensus 19 ~~~~l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~-g~~~~~~~~~----~~~~~~~~D~vI~iS~sG~t~~~i~ 93 (179)
T cd05005 19 DEEELDKLISAILNAKRIFVYGAGRSGLVAKAFAMRLMHL-GLNVYVVGET----TTPAIGPGDLLIAISGSGETSSVVN 93 (179)
T ss_pred CHHHHHHHHHHHHhCCeEEEEecChhHHHHHHHHHHHHhC-CCeEEEeCCC----CCCCCCCCCEEEEEcCCCCcHHHHH
Confidence 4466788999999999999999999999999999999887 6777765332 1345678999999999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCccccccceEEEcCCCCCcc--------cc-chhHHHHHHHHHHHHHHHHhhhh
Q psy1919 544 ALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIG--------VA-STKAYTSQFISLVMFALVMCEDR 608 (737)
Q Consensus 544 al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E~~--------va-sTksftsql~~L~lLal~la~~~ 608 (737)
+++.||++|+++|+||+..+|||++.||++|.++.+++.. .+ .+..+++++.++.+|...+....
T Consensus 94 ~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ld~l~~~~~~~~ 167 (179)
T cd05005 94 AAEKAKKAGAKVVLITSNPDSPLAKLADVVVVIPAATKDDHGGEHKSIQPLGTLFEQSALVFLDAVIAKLMEEL 167 (179)
T ss_pred HHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCCcccccCCCCccccccCccHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998754321 11 22224667777777766665443
No 43
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=99.72 E-value=4.1e-17 Score=152.38 Aligned_cols=100 Identities=25% Similarity=0.481 Sum_probs=92.4
Q ss_pred eEEEEecchhHHHHHHHHHHHHHhcCCcEEEeccccccccC-CCCCCCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEE
Q psy1919 480 RLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRN-TPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGV 558 (737)
Q Consensus 480 rI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~~~~-~~l~~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaI 558 (737)
+|+++|+|+|+++|..++++|.+++++++.+..++++.+.. ..++++|++|+||+||+|++++++++.||++|+++|+|
T Consensus 1 ~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~i 80 (120)
T cd05710 1 NVFFVGCGGSLADMYPAKYFLKKESKLPVFVYNAAEFLHTGPKRLTEKSVVILASHSGNTKETVAAAKFAKEKGATVIGL 80 (120)
T ss_pred CEEEEEecHHHHHHhHHHHHHHHhcCCceEEEcHHHHhhcCcccCCCCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEE
Confidence 59999999999999999999999888999888887775443 45788999999999999999999999999999999999
Q ss_pred ecCCCCccccccceEEEcCCC
Q psy1919 559 TNTVGSSISRESHCGIHINAG 579 (737)
Q Consensus 559 Tn~~~S~La~~AD~~L~~~ag 579 (737)
|+.++|||++.||++|.++++
T Consensus 81 T~~~~s~la~~ad~~l~~~~~ 101 (120)
T cd05710 81 TDDEDSPLAKLADYVIVYGFE 101 (120)
T ss_pred ECCCCCcHHHhCCEEEEccCC
Confidence 999999999999999999877
No 44
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.72 E-value=4.5e-17 Score=176.72 Aligned_cols=142 Identities=19% Similarity=0.233 Sum_probs=119.2
Q ss_pred cccchhHHHcCC-CeEEEEecchhHHHHHHHHHHHHHhcCCcEEEeccccccc-cCCCCCCCCeEEEEcCCCCcHHHHHH
Q psy1919 467 GIKDYIPEIRRC-RRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLD-RNTPVFRDDVCFFISQSGETADSLMA 544 (737)
Q Consensus 467 ~l~~~~~~L~~a-krI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~~-~~~~l~~~dlvI~ISqSGeT~etl~a 544 (737)
.++++++.|.++ ++|+|+|+|+|+++|.+++++|.++ |+++....+.++.+ ....+.++|++|+||+||+|++++++
T Consensus 35 ~l~~~~~~l~~a~~~I~i~G~G~S~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t~~~~~~ 113 (326)
T PRK10892 35 DFTLACEKMFWCKGKVVVMGMGKSGHIGRKMAATFAST-GTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEILAL 113 (326)
T ss_pred HHHHHHHHHHhcCCeEEEEeCcHhHHHHHHHHHHHhcC-CceeEEeChHHhhccccccCCCCCEEEEEeCCCCCHHHHHH
Confidence 477888888777 7999999999999999999999986 68887765544432 23457789999999999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCccccccceEEEcCCCCC---ccccchhHHHHHHHHHHHHHHHHhhhhc
Q psy1919 545 LRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE---IGVASTKAYTSQFISLVMFALVMCEDRI 609 (737)
Q Consensus 545 l~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E---~~vasTksftsql~~L~lLal~la~~~~ 609 (737)
++.||++|++||+||++++|||+++||++|.+.+++| .....+.+++++++.+..|...+...++
T Consensus 114 ~~~ak~~g~~vi~iT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~~s~ia~~~~~dsL~~~~l~~~g 181 (326)
T PRK10892 114 IPVLKRLHVPLICITGRPESSMARAADIHLCVKVPKEACPLGLAPTSSTTATLVMGDALAVALLKARG 181 (326)
T ss_pred HHHHHHCCCcEEEEECCCCCcccccCCEEEEeCCCcccCCCCCCchHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999987775 2345788899988888877666555443
No 45
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=99.72 E-value=3.6e-17 Score=171.69 Aligned_cols=88 Identities=30% Similarity=0.360 Sum_probs=73.7
Q ss_pred ccEEEEcCCCceEEEEccCCchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeC-CCCCEEEEE
Q psy1919 2 KCIALDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSD-IDQTFCVVH 80 (737)
Q Consensus 2 ~gIa~~~~~~~~i~~~K~~G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~-~~~~~avvh 80 (737)
-||++. ++..+.++|.+|.+.++++.. ++. .+.+.++|||+||||+|.++..|+|||... .+++++++|
T Consensus 31 ~Gi~~~--d~~~~~~~k~~g~~~~~~~~~-------~~~-~~~~~~~lgH~R~at~g~~~~~n~qPf~~~~~~~~~~~~h 100 (252)
T cd00715 31 AGIATS--DGKRFHTHKGMGLVSDVFDEE-------KLR-RLPGNIAIGHVRYSTAGSSSLENAQPFVVNSPLGGIALAH 100 (252)
T ss_pred eEEEEE--eCCEEEEEecCCcHHHhhccc-------chh-hCCCcEEEEEEEcccCCCCCccCCCCcEEecCCCcEEEEE
Confidence 488887 556788999999988876431 223 467889999999999999889999999753 467899999
Q ss_pred cceecchHHHHHHHhcCCC
Q psy1919 81 NGIVTNYKELKAFLTNKDH 99 (737)
Q Consensus 81 NG~I~N~~~Lr~~L~~~G~ 99 (737)
||+|+||.+||++|...|+
T Consensus 101 NG~I~n~~~L~~~l~~~g~ 119 (252)
T cd00715 101 NGNLVNAKELREELEEEGR 119 (252)
T ss_pred EEEECCHHHHHHHHHHCCC
Confidence 9999999999999999888
No 46
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=99.71 E-value=1.4e-16 Score=158.37 Aligned_cols=138 Identities=20% Similarity=0.214 Sum_probs=109.4
Q ss_pred ccccccchhHHHcCCCeEEEEecchhHHHHHHHHHHHHHhcCCcEEEeccccccccCCCCCCCCeEEEEcCCCCcHHHHH
Q psy1919 464 ILGGIKDYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLM 543 (737)
Q Consensus 464 ~l~~l~~~~~~L~~akrI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~~~~~~l~~~dlvI~ISqSGeT~etl~ 543 (737)
+.+.++++++.|.++++|+++|+|.|+.+|..+.++|.++ |+.+...... . ...++++|++|++|+||+|+++++
T Consensus 16 ~~~~~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~~-g~~~~~~~~~--~--~~~~~~~Dv~I~iS~sG~t~~~i~ 90 (179)
T TIGR03127 16 DEEELDKLADKIIKAKRIFVAGAGRSGLVGKAFAMRLMHL-GFNVYVVGET--T--TPSIKKGDLLIAISGSGETESLVT 90 (179)
T ss_pred CHHHHHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHHhC-CCeEEEeCCc--c--cCCCCCCCEEEEEeCCCCcHHHHH
Confidence 3456788899999999999999999999999999999887 6777665332 1 245778999999999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCccccccceEEEcCCCCCcc-------ccchhH--HHHHHHHHHHHHHHHhh
Q psy1919 544 ALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIG-------VASTKA--YTSQFISLVMFALVMCE 606 (737)
Q Consensus 544 al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E~~-------vasTks--ftsql~~L~lLal~la~ 606 (737)
+++.||++|++||+||++++|||+++||++|.++..++.. ...+.+ +++++.++.+|...+..
T Consensus 91 ~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~ild~l~~~~~~ 162 (179)
T TIGR03127 91 VAKKAKEIGATVAAITTNPESTLGKLADVVVEIPAATKKDSEGNYKSIQPLGSLFEQSLLLFLDAVILKLMK 162 (179)
T ss_pred HHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCCccccCCCCCccccCcCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988654321 111112 23556666666555443
No 47
>KOG0572|consensus
Probab=99.70 E-value=5.8e-17 Score=172.17 Aligned_cols=89 Identities=27% Similarity=0.356 Sum_probs=78.8
Q ss_pred ccEEEEcCCCceEEEEccCCchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeC-CCCCEEEEE
Q psy1919 2 KCIALDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSD-IDQTFCVVH 80 (737)
Q Consensus 2 ~gIa~~~~~~~~i~~~K~~G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~-~~~~~avvh 80 (737)
.||.-.++ .+++.++|+.|.|+++|. +.++. .+.+++||||+||+|.|..-..|+|||+.+ ..|.++|+|
T Consensus 34 AGIvts~~-~~~~~~~kG~Gmv~dVFt-------e~~l~-~L~g~~gIGH~RYsTaG~s~~~n~QPFvv~t~~G~lavAH 104 (474)
T KOG0572|consen 34 AGIVTSGG-RGRLYQIKGMGLVSDVFT-------EDKLS-QLPGSIGIGHTRYSTAGSSALSNVQPFVVNTPHGSLAVAH 104 (474)
T ss_pred cceEeecC-CCceEEEeccchhhhhhc-------HHHHh-hCccceeeeeeecccccccccccccceEeeccCceEEEec
Confidence 47888743 568999999999999994 34455 688999999999999999889999999887 677899999
Q ss_pred cceecchHHHHHHHhcCCC
Q psy1919 81 NGIVTNYKELKAFLTNKDH 99 (737)
Q Consensus 81 NG~I~N~~~Lr~~L~~~G~ 99 (737)
||++.|+++||++|.++|+
T Consensus 105 NGnLVN~~~Lrr~l~~~g~ 123 (474)
T KOG0572|consen 105 NGNLVNYKSLRRELLEEGV 123 (474)
T ss_pred cCcccchHHHHHHHHhcCc
Confidence 9999999999999999999
No 48
>cd05010 SIS_AgaS_like AgaS-like protein. AgaS contains a SIS (Sugar ISomerase) domain which is found in many phosphosugar isomerases and phosphosugar binding proteins. AgaS is a putative isomerase in Escherichia coli. It is similar to the glucosamine-6-phosphate synthases (GlmS) which catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source.
Probab=99.70 E-value=1.9e-17 Score=160.90 Aligned_cols=73 Identities=25% Similarity=0.345 Sum_probs=68.2
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHhcc--ccccccccccccccccccccCCCeEEEEEcCCchhHH-HHHHHHHhhhc
Q psy1919 652 MLLMGRGGYNYATCMEGALKIKELTY--MHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVK-CMNALLQVIFT 725 (737)
Q Consensus 652 ~~~lG~GG~~y~~A~EgALKlkE~s~--i~Ae~~~a~Ef~HGPialid~~t~Vi~l~~~d~~~~k-~~~~l~ei~aR 725 (737)
++|+|| |++|++|+||||||||++| +||++|+++||+|||++++++++|||+|+++|+..++ ..++++|+++|
T Consensus 1 ~~~lGr-G~~y~~A~E~ALKlkE~s~~~~~ae~~s~~Ef~HGP~alv~~~~~vi~l~~~d~~~~~~~~~~~~ei~~~ 76 (151)
T cd05010 1 VVYLGS-GPLAGLAREAALKVLELTAGKVATVYDSPLGFRHGPKSLVDDDTLVVVFVSNDPYTRQYDLDLLKELRRD 76 (151)
T ss_pred CEEEec-CCcHHHHHHHHHHHHHHhccchhhccccccccccCcHHHccCCceEEEEEcCCchHHHHHHHHHHHHHhc
Confidence 479999 9999999999999999998 9999999999999999999999999999999987655 66889999988
No 49
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=6.2e-16 Score=155.24 Aligned_cols=140 Identities=21% Similarity=0.169 Sum_probs=114.2
Q ss_pred cccchhHHH-cCCCeEEEEecchhHHHHHHHHHHHHHhcCCcEEEeccccccccC-CCCCCCCeEEEEcCCCCcHHHHHH
Q psy1919 467 GIKDYIPEI-RRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRN-TPVFRDDVCFFISQSGETADSLMA 544 (737)
Q Consensus 467 ~l~~~~~~L-~~akrI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~~~~-~~l~~~dlvI~ISqSGeT~etl~a 544 (737)
.+.++++.| ....+|+++|+|.|.++|..++..|..+ |.++++..+.|..+.. +.+.++|++|+||.||||.+++.+
T Consensus 27 ~~~~a~~~i~~~~gkv~V~G~GkSG~Igkk~Aa~L~s~-G~~a~fv~p~ea~hgdlg~i~~~DvviaiS~SGeT~el~~~ 105 (202)
T COG0794 27 DFVRAVELILECKGKVFVTGVGKSGLIGKKFAARLAST-GTPAFFVGPAEALHGDLGMITPGDVVIAISGSGETKELLNL 105 (202)
T ss_pred HHHHHHHHHHhcCCcEEEEcCChhHHHHHHHHHHHHcc-CCceEEecCchhccCCccCCCCCCEEEEEeCCCcHHHHHHH
Confidence 344555544 4588999999999999999999999998 7999998888876554 567899999999999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCccccccceEEEcCCCCCcc---ccchhHHHHHHHHHHHHHHHHhhh
Q psy1919 545 LRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIG---VASTKAYTSQFISLVMFALVMCED 607 (737)
Q Consensus 545 l~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E~~---vasTksftsql~~L~lLal~la~~ 607 (737)
++.+|+.|+++|+||.+++|+|++.||++|.++..+|.. .+.|.+-+.++..-..++..+-+.
T Consensus 106 ~~~aK~~g~~liaiT~~~~SsLak~aDvvl~ip~~~e~~p~~l~pt~st~~~l~~gdal~~~L~e~ 171 (202)
T COG0794 106 APKAKRLGAKLIAITSNPDSSLAKAADVVLVIPVKTEACPLGLAPTTSTTLTLALGDALAGTLFEA 171 (202)
T ss_pred HHHHHHcCCcEEEEeCCCCChHHHhcCeEEEccCccccCcccCCcchhhHHHHhhccHHHHHHHHH
Confidence 999999999999999999999999999999999877644 345555555555444444444333
No 50
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.68 E-value=5.2e-16 Score=167.92 Aligned_cols=141 Identities=17% Similarity=0.209 Sum_probs=112.4
Q ss_pred cccchhHHHcCC-CeEEEEecchhHHHHHHHHHHHHHhcCCcEEEecccccc-ccCCCCCCCCeEEEEcCCCCcHHHHHH
Q psy1919 467 GIKDYIPEIRRC-RRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFL-DRNTPVFRDDVCFFISQSGETADSLMA 544 (737)
Q Consensus 467 ~l~~~~~~L~~a-krI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~-~~~~~l~~~dlvI~ISqSGeT~etl~a 544 (737)
.+.++++.|..+ ++|+|+|+|.|+.+|++++++|.++ |+++....+.+.. .....+.++|++|+||+||+|++++++
T Consensus 30 ~~~~~~~~l~~~~~~I~i~G~G~S~~~A~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~~ 108 (321)
T PRK11543 30 DFVRAANIILHCEGKVVVSGIGKSGHIGKKIAATLAST-GTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKELDLI 108 (321)
T ss_pred HHHHHHHHHHhcCCcEEEEecChhHHHHHHHHHHHHcC-CCceeecChHHHhhCCcCccCCCCEEEEEeCCCCcHHHHHH
Confidence 355677777666 5999999999999999999999997 6888776555443 333567899999999999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCccccccceEEEcCCCCCc---cccchhHHHHHHHHHHHHHHHHhhhh
Q psy1919 545 LRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEI---GVASTKAYTSQFISLVMFALVMCEDR 608 (737)
Q Consensus 545 l~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E~---~vasTksftsql~~L~lLal~la~~~ 608 (737)
++.||++|+++|+||+.++|||+++||++|.+....|. ....+.+++++++.+..|...+...+
T Consensus 109 ~~~ak~~g~~vI~iT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~ss~~~~~~~~dsL~~~~l~~~ 175 (321)
T PRK11543 109 IPRLEDKSIALLAMTGKPTSPLGLAAKAVLDISVEREACPMHLAPTSSTVNTLMMGDALAMAVMQAR 175 (321)
T ss_pred HHHHHHcCCeEEEEECCCCChhHHhCCEEEEcCCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999998765432 23345666667666665555544433
No 51
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=99.67 E-value=6.1e-15 Score=159.04 Aligned_cols=210 Identities=17% Similarity=0.183 Sum_probs=149.2
Q ss_pred HcCCCeEEEEecchhHHHHHHHHHHHHHhc-CCcEEEeccccccccCCCCCCCCeEEEEcCCCCcHHHHHHHHHHHHcCC
Q psy1919 475 IRRCRRLMMIGCGTSYHSAVATRQLLEELT-ELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGA 553 (737)
Q Consensus 475 L~~akrI~ivG~GsS~~aA~~~~~~l~~~~-gi~v~~~~ase~~~~~~~l~~~dlvI~ISqSGeT~etl~al~~AKe~Ga 553 (737)
++.+++|+|+|+|+|+.+|..++++|...+ ++++..... + .....++++|++|++|+||+|.+++.+++.|+++|+
T Consensus 18 ~~~~~~I~i~G~G~S~~~a~~l~~~l~~~~~~~~v~~~~d--~-~l~~~~~~~dlvI~iS~SG~t~e~~~a~~~A~~~g~ 94 (308)
T TIGR02128 18 LKIYDEIVICGMGGSGIAGRIISILLLEKSFQGPVFVVKD--Y-RLPRFVDGKTLLIAVSYSGNTEETLSAVEEAKKKGA 94 (308)
T ss_pred HhcCCEEEEEEecHHHHHHHHHHHHHHHhCCCccEEEEcC--c-cccccCCCCeEEEEEcCCCCCHHHHHHHHHHHHcCC
Confidence 444799999999999999999999999886 477765433 2 123456789999999999999999999999999999
Q ss_pred eEEEEecCCCCcccccc----ceEEEcCCCCCccccchhHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHH
Q psy1919 554 LIVGVTNTVGSSISRES----HCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTRRNEIIKGLKVIHEQI 629 (737)
Q Consensus 554 ~tIaITn~~~S~La~~A----D~~L~~~ag~E~~vasTksftsql~~L~lLal~la~~~~~~~~~~~~~~~~l~~l~~~i 629 (737)
++|+||+ +++|++.| +.++.++.+.. ...++...++.+..+... ..+. +.++..+.+. .|
T Consensus 95 ~ii~iT~--~g~L~~~a~~~~~~~i~vP~~~~----~R~s~~~~~~~~l~~l~~---~~g~---d~~~~~~~l~-~~--- 158 (308)
T TIGR02128 95 KVIAITS--GGRLEEMAKERGLDVIKIPKGLQ----PRAAFPYLLTPLILMLIK---PLGI---DIEEAELLEG-GL--- 158 (308)
T ss_pred EEEEECC--CcHHHHHHHhcCCeEEEcCCCCC----CeeeHHHHHHHHHHHHHH---HcCC---ChHHHHHHhc-CC---
Confidence 9999996 56899998 77787775422 223333222222221111 1110 1111111111 01
Q ss_pred HHHhcccHHHHHHHHHHcCCCeEEEEecCCCCHHHHHHHHHHHHHhcccccccccccccccccccccc---CCCeEEEEE
Q psy1919 630 REVLQMDSEVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALID---NSMPVIMIL 706 (737)
Q Consensus 630 ~~vl~~~~~~~~lA~~l~~~~~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPialid---~~t~Vi~l~ 706 (737)
..-...+.++++|.++.+. ..++.|. ++..++|+.++-.|.|+++++|..-...|..|.-+...+ ....++++.
T Consensus 159 -~~~~~~n~Ak~LA~~l~~~-~pvi~~~-~~~~~~A~R~k~~l~enak~~a~~~~lpe~~hn~i~~~~~~~~~~~~~~~~ 235 (308)
T TIGR02128 159 -DTPKLKALAKRLAEEIYNR-IPVIYSS-SPTRPIAERWKNEINENAKSPAYYNILPELNHNEIEGLEDPYGLYEIVFMS 235 (308)
T ss_pred -ccccccCHHHHHHHHhhCC-CCEEEeC-CccHHHHHHHHHHHHhhcCCccccccCCcccccceeeeccccccceEEEee
Confidence 1111357899999999875 4556677 558888999999999999999999999999999998887 344555555
No 52
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=99.66 E-value=1.2e-15 Score=143.19 Aligned_cols=134 Identities=21% Similarity=0.293 Sum_probs=109.6
Q ss_pred cccchhHHHcCCCeEEEEecchhHHHHHHHHHHHHHhcCCcEEEecccccccc-CCCCCCCCeEEEEcCCCCcHHHHHHH
Q psy1919 467 GIKDYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDR-NTPVFRDDVCFFISQSGETADSLMAL 545 (737)
Q Consensus 467 ~l~~~~~~L~~akrI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~~~-~~~l~~~dlvI~ISqSGeT~etl~al 545 (737)
.++++++.|.++++|+++|+|.|+.+|..+++.|.++ +.++......+.... ...+.++|++|++|++|+|+++++++
T Consensus 2 ~i~~~~~~i~~~~~i~i~g~g~s~~~a~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~~~ 80 (139)
T cd05013 2 ALEKAVDLLAKARRIYIFGVGSSGLVAEYLAYKLLRL-GKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEAA 80 (139)
T ss_pred HHHHHHHHHHhCCEEEEEEcCchHHHHHHHHHHHHHc-CCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHHH
Confidence 3567888899999999999999999999999999987 567766654444222 23457899999999999999999999
Q ss_pred HHHHHcCCeEEEEecCCCCccccccceEEEcCCCCCccccchhHHHHHHHHHHHHHHH
Q psy1919 546 RYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALV 603 (737)
Q Consensus 546 ~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E~~vasTksftsql~~L~lLal~ 603 (737)
+.|+++|+++|+||++.++++++++|++|.++...+. .....+.+++.+++++.+.
T Consensus 81 ~~a~~~g~~iv~iT~~~~~~l~~~~d~~i~~~~~~~~--~~~~~~~~~~~~~~~~d~l 136 (139)
T cd05013 81 EIAKERGAKVIAITDSANSPLAKLADIVLLVSSEEGD--FRSSAFSSRIAQLALIDAL 136 (139)
T ss_pred HHHHHcCCeEEEEcCCCCChhHHhcCEEEEcCCCccc--cccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999876543 2234566666666665443
No 53
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.63 E-value=4e-15 Score=156.69 Aligned_cols=130 Identities=22% Similarity=0.223 Sum_probs=107.9
Q ss_pred CeEEEEecchhHHHHHHHHHHHHHhcCCcEEEeccccccc-cCCCCCCCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEE
Q psy1919 479 RRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLD-RNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVG 557 (737)
Q Consensus 479 krI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~~-~~~~l~~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIa 557 (737)
.+|+|+|+|+|+.+|.+++++|.++ |+++....+.+... ....+.++|++|+||+||+|++++++++.||++|+++|+
T Consensus 1 ~rI~i~G~G~S~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~ 79 (268)
T TIGR00393 1 GKLVIVGIGKSGLIGKKIVATFAST-GTPSFFLHPTEAMHGDLGMVEPNDVVLMISYSGESLELLNLIPHLKRLSHKIIA 79 (268)
T ss_pred CcEEEEecChHHHHHHHHHHHHHhc-CCceEEeCHhHHhhcccCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEE
Confidence 3799999999999999999999987 68877766655533 224578899999999999999999999999999999999
Q ss_pred EecCCCCccccccceEEEcCCCCC---ccccchhHHHHHHHHHHHHHHHHhhhhc
Q psy1919 558 VTNTVGSSISRESHCGIHINAGPE---IGVASTKAYTSQFISLVMFALVMCEDRI 609 (737)
Q Consensus 558 ITn~~~S~La~~AD~~L~~~ag~E---~~vasTksftsql~~L~lLal~la~~~~ 609 (737)
||+..+|+|+++||++|.++.+.+ .....+.++.+++.++.+|...+...++
T Consensus 80 iT~~~~s~l~~~~d~~l~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~ 134 (268)
T TIGR00393 80 FTGSPNSSLARAADYVLDIKVEKEACPINLAPTTSTTLTLALGDALAVALMRARN 134 (268)
T ss_pred EECCCCCcccccCCEEEEcCCCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999977654 2345677788888777777766664443
No 54
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=99.63 E-value=2.9e-15 Score=160.96 Aligned_cols=164 Identities=27% Similarity=0.306 Sum_probs=122.6
Q ss_pred HHHHHHHcChHHHHHHHhccccccccccccccccchhHHHcCCCeEEEEecchhHHHH-HHHHHHHHHhcCCcE---EEe
Q psy1919 436 FMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGCGTSYHSA-VATRQLLEELTELPV---MVE 511 (737)
Q Consensus 436 ~M~kEI~EQP~~l~~~l~~~i~~~~~~i~l~~l~~~~~~L~~akrI~ivG~GsS~~aA-~~~~~~l~~~~gi~v---~~~ 511 (737)
.|.+|..+.++++...+.. +. ..++.+++.|.+.+||+++|+|+|+..| +++..++-+++ .+. ...
T Consensus 29 ~~~~ed~~~~~av~~~l~~-I~--------~av~~~~~~l~~ggrI~~~GaGtSg~la~~da~e~~~tfg-~~~~~v~~i 98 (299)
T PRK05441 29 LINEEDKKVALAVEKALPQ-IA--------AAVDAAAAALRQGGRLIYIGAGTSGRLGVLDASECPPTFG-VPPELVVGL 98 (299)
T ss_pred HHHHhhHHHHHHHHHhHHH-HH--------HHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhCcCccC-CCchhceee
Confidence 4556655666666655532 11 2356778889999999999999999988 77776666653 321 110
Q ss_pred -------------ccccc------cccCCCCCCCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccce
Q psy1919 512 -------------LASDF------LDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHC 572 (737)
Q Consensus 512 -------------~ase~------~~~~~~l~~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~ 572 (737)
...+. ......+.++|++|+||+||+|++++.+++.||++|++||+||++++|||++.+|+
T Consensus 99 iagG~~a~~~a~e~~ed~~~~~~~~l~~~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~La~~aD~ 178 (299)
T PRK05441 99 IAGGEKALTKAVEGAEDDAELGAADLKAINLTAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGSPLSKEADI 178 (299)
T ss_pred ecCCcHHHHhcccccCChHHHHHHHHHhcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHhCCE
Confidence 01111 01123467899999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCccccch--hHHHHHHHHHHHHHHHHhhhhc
Q psy1919 573 GIHINAGPEIGVAST--KAYTSQFISLVMFALVMCEDRI 609 (737)
Q Consensus 573 ~L~~~ag~E~~vasT--ksftsql~~L~lLal~la~~~~ 609 (737)
.|.++.|+|....+| ++.++|.+++.+|...+....+
T Consensus 179 ~I~~~~g~E~~~~st~~~s~taqk~iLn~lst~~~~~~g 217 (299)
T PRK05441 179 AIEVVVGPEVLTGSTRMKAGTAQKLVLNMISTGVMIRLG 217 (299)
T ss_pred EEEcCCCCccccccccccchhHHHHHHHHHHHHHHHHcc
Confidence 999999998754444 6788999999988877665444
No 55
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=99.62 E-value=6.3e-15 Score=155.22 Aligned_cols=165 Identities=25% Similarity=0.310 Sum_probs=121.1
Q ss_pred HHHHHHHcChHHHHHHHhccccccccccccccccchhHHHcCCCeEEEEecchhHHHH-HHHHHHHHHhcCCc----EEE
Q psy1919 436 FMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGCGTSYHSA-VATRQLLEELTELP----VMV 510 (737)
Q Consensus 436 ~M~kEI~EQP~~l~~~l~~~i~~~~~~i~l~~l~~~~~~L~~akrI~ivG~GsS~~aA-~~~~~~l~~~~gi~----v~~ 510 (737)
.|.+|-.+.++++.+.+.. + .+.++.+++.|.+..||+++|+|+|...| +++..++-+++.-+ ...
T Consensus 16 ~~~~~~~~~~~av~~~l~~-I--------~~av~~~~~~l~~ggrl~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~i 86 (257)
T cd05007 16 LLNEEDKKVAAAVEAALPQ-I--------ARAVDAAAERLRAGGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLI 86 (257)
T ss_pred HHHHHHHHHHHHHHHhHHH-H--------HHHHHHHHHHHHcCCEEEEEcCcHHHHHHHHHHHhccccccCCcccceEEE
Confidence 4566666666666554432 1 12355677889999999999999999877 66767666654211 110
Q ss_pred --------------eccccc---cccCCCCCCCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceE
Q psy1919 511 --------------ELASDF---LDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCG 573 (737)
Q Consensus 511 --------------~~ase~---~~~~~~l~~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~ 573 (737)
+...+. ......+.++|++|+||+||+|++++.+++.||++|++||+||++++|+|++.||++
T Consensus 87 agg~~a~~~a~~~~edd~~~~~~~l~a~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~~aD~~ 166 (257)
T cd05007 87 AGGEPALTRAVEGAEDDEEAGAADLQAINLTERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLADIA 166 (257)
T ss_pred eCCHHHHHhhccccCChHHHHHHHHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEE
Confidence 000010 111244578999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCcccc--chhHHHHHHHHHHHHHHHHhhhhc
Q psy1919 574 IHINAGPEIGVA--STKAYTSQFISLVMFALVMCEDRI 609 (737)
Q Consensus 574 L~~~ag~E~~va--sTksftsql~~L~lLal~la~~~~ 609 (737)
|.+..++|.... .+++.++|.++|.+|...+....+
T Consensus 167 I~~~~g~E~~~~st~~~s~~aqk~vLn~L~t~~~~~~g 204 (257)
T cd05007 167 IALITGPEVVAGSTRLKAGTAQKLALNMLSTAVMIRLG 204 (257)
T ss_pred EEcCCCCccccCccccccHHHHHHHHHHHHHHHHHHcc
Confidence 999988886433 346789999999988777655443
No 56
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=99.61 E-value=3.3e-15 Score=148.48 Aligned_cols=107 Identities=22% Similarity=0.230 Sum_probs=87.9
Q ss_pred HHHcCCCeEEEEecchhHHHHHHHHHHHHHhc-----CCcEEEec--cccccc--------------cCCCCCCCCeEEE
Q psy1919 473 PEIRRCRRLMMIGCGTSYHSAVATRQLLEELT-----ELPVMVEL--ASDFLD--------------RNTPVFRDDVCFF 531 (737)
Q Consensus 473 ~~L~~akrI~ivG~GsS~~aA~~~~~~l~~~~-----gi~v~~~~--ase~~~--------------~~~~l~~~dlvI~ 531 (737)
+.+.++++|+++|+|+|+.+|+.+++.|.... ++++.... +.++.. ....+.++|++|+
T Consensus 28 ~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~I~ 107 (177)
T cd05006 28 EALLNGGKILICGNGGSAADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIANDYGYEEVFSRQVEALGQPGDVLIG 107 (177)
T ss_pred HHHHCCCEEEEEeCcHHHHHHHHHHHHHhchhccCCCCCceEeccCCHHHHHHHhccCCHHHHHHHHHHHhCCCCCEEEE
Confidence 34456899999999999999999999886432 57776544 222111 0124688999999
Q ss_pred EcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCC
Q psy1919 532 ISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAG 579 (737)
Q Consensus 532 ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag 579 (737)
+|+||+|++++++++.||++|++||+||+..+|||+++||++|.++..
T Consensus 108 iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~~~ 155 (177)
T cd05006 108 ISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVPSD 155 (177)
T ss_pred EeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeCCC
Confidence 999999999999999999999999999999999999999999998754
No 57
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=99.60 E-value=3.8e-15 Score=145.14 Aligned_cols=110 Identities=17% Similarity=0.165 Sum_probs=90.8
Q ss_pred chhHHHcCCCeEEEEecchhHHHHHHH------HHHHHHhcCCcEEEec-cc--------cccc-------cCCCCCCCC
Q psy1919 470 DYIPEIRRCRRLMMIGCGTSYHSAVAT------RQLLEELTELPVMVEL-AS--------DFLD-------RNTPVFRDD 527 (737)
Q Consensus 470 ~~~~~L~~akrI~ivG~GsS~~aA~~~------~~~l~~~~gi~v~~~~-as--------e~~~-------~~~~l~~~d 527 (737)
.+++.|.++++|+++|+|+|+..|+.+ ++++.+. |+++.... .. +..+ ....+.++|
T Consensus 3 ~~~~~l~~a~rI~~~G~G~S~~~A~~~a~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 81 (154)
T TIGR00441 3 LLADSFKAGGKVLICGNGGSACDAQHFAAELTGRYRENRP-GLPAIALSADVSHLTCVSNDYGYEDVFSRQVEALGQKGD 81 (154)
T ss_pred HHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhhcccccCCC-CceEEecCCcHHHHHHhhccCCHHHHHHHHHHHhCCCCC
Confidence 567788999999999999999999998 4556666 67776654 21 1100 012357899
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCCC
Q psy1919 528 VCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGP 580 (737)
Q Consensus 528 lvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~ 580 (737)
++|+||+||+|++++++++.||++|+++|+||++++|||+++||++|.++..+
T Consensus 82 ~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~~~~~~ 134 (154)
T TIGR00441 82 VLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELRVPHFY 134 (154)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeCCCC
Confidence 99999999999999999999999999999999999999999999999987643
No 58
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=99.59 E-value=1.5e-14 Score=138.92 Aligned_cols=135 Identities=18% Similarity=0.231 Sum_probs=115.1
Q ss_pred ccchhHHHcCCCeEEEEecchhHHHHHHHHHHHHHhcCCcEEEeccccccccCCC-CCCCCeEEEEcCCCCcHH-HHHHH
Q psy1919 468 IKDYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTP-VFRDDVCFFISQSGETAD-SLMAL 545 (737)
Q Consensus 468 l~~~~~~L~~akrI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~~~~~~-l~~~dlvI~ISqSGeT~e-tl~al 545 (737)
++++++.+..+++|+++|+|.|+.+|+.++++|.+++++++....+.||.+.+.. +++++++|++|++|+|.+ +++++
T Consensus 3 ~~~~a~~~~~~~~i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~~~~~e~~hg~~~~~~~~~~vi~is~~g~t~~~~~~~~ 82 (153)
T cd05009 3 IKELAEKLKEAKSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIALVDEGTPVIFLAPEDRLEEKLESLI 82 (153)
T ss_pred HHHHHHHHhccCcEEEEcCCCCHHHHHHHHHHHHHHHhhcceeccHHHhccChhhhccCCCcEEEEecCChhHHHHHHHH
Confidence 4567788899999999999999999999999999998799999999999877644 688999999999999876 88999
Q ss_pred HHHHHcCCeEEEEecCCCCccccccceEEEcCCCCCccccchhHHHHHHHHHHHHHHHHhhhhc
Q psy1919 546 RYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRI 609 (737)
Q Consensus 546 ~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E~~vasTksftsql~~L~lLal~la~~~~ 609 (737)
+.+|++|+++|+||+..+| ++.+|+.+.++...+. -+...+++.+.+++..++..++
T Consensus 83 ~~~~~~~~~vi~it~~~~s--~~~~d~~i~~~~~~~~-----~~~~~~~~~~q~la~~~a~~~g 139 (153)
T cd05009 83 KEVKARGAKVIVITDDGDA--KDLADVVIRVPATVEE-----LSPLLYIVPLQLLAYHLAVARG 139 (153)
T ss_pred HHHHHcCCEEEEEecCCcc--cccCCeEEECCCCchh-----HHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999988 9999999988764432 2345566777888887776544
No 59
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=99.58 E-value=1.2e-14 Score=170.39 Aligned_cols=137 Identities=13% Similarity=0.115 Sum_probs=104.0
Q ss_pred ccchhHHHcCCCeEEEEecchhHHHHHHHHHHHHHhcCCcEEEeccccccccCC-CCCCCCeEEEEcCCCCc-HHHHHHH
Q psy1919 468 IKDYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNT-PVFRDDVCFFISQSGET-ADSLMAL 545 (737)
Q Consensus 468 l~~~~~~L~~akrI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~~~~~-~l~~~dlvI~ISqSGeT-~etl~al 545 (737)
++++++.+...++++++|.|..|.+|+.++.+|+++..+++......||.|.+. .+++++.+|++.-.|++ ..+.+.+
T Consensus 453 ~~~~a~~l~~~~~~~~lG~G~~~g~A~E~aLKl~E~~~~~a~~~~~~Ef~HGP~~~i~~~~~vi~l~~~~~~~~~~~~~~ 532 (607)
T TIGR01135 453 IAELAERYADKHNFLFLGRGLGYPIALEGALKLKEISYIHAEGYPAGELKHGPIALIDEGLPVVAIAPKDSLFEKTKSNV 532 (607)
T ss_pred HHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHhccccchhhhccCcHhhhCCCCCEEEEEeCchHHHHHHHHH
Confidence 456677788999999999999999999999999999999999998899988764 35677788888878875 4567889
Q ss_pred HHHHHcCCeEEEEecCCCCccccccceEEEcCCCCCccccchhHHHHHHHHHHHHHHHHhhhhc
Q psy1919 546 RYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRI 609 (737)
Q Consensus 546 ~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E~~vasTksftsql~~L~lLal~la~~~~ 609 (737)
+.++++|++++.|++.........+|..+.++..++. ...+. .++.+.+|+..++..++
T Consensus 533 ~~~~~~g~~v~~I~~~~~~~~~~~~~~~i~~p~~~~~----l~pl~-~~~p~Qlla~~~A~~~G 591 (607)
T TIGR01135 533 EEVKARGARVIVFADEDDEFLESVADDVIKLPEVEEL----LAPIV-YTVPLQLLAYHIALAKG 591 (607)
T ss_pred HHHHHcCCeEEEEECCCcccccccCCcEEECCCCCcc----chHHH-HHHHHHHHHHHHHHHcC
Confidence 9999999999999986432233456677777654332 12232 34556777777776554
No 60
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=99.58 E-value=1.7e-14 Score=169.21 Aligned_cols=136 Identities=16% Similarity=0.200 Sum_probs=101.8
Q ss_pred ccchhHHHcCCCeEEEEecchhHHHHHHHHHHHHHhcCCcEEEeccccccccCC-CCCCCCeEEEEcCCCCcHH-HHHHH
Q psy1919 468 IKDYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNT-PVFRDDVCFFISQSGETAD-SLMAL 545 (737)
Q Consensus 468 l~~~~~~L~~akrI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~~~~~-~l~~~dlvI~ISqSGeT~e-tl~al 545 (737)
++++++.+...++++++|.|.+|.+|+.++.+|+++..+++......||.|.+. .+++++.+|++.-.|++.+ +.+++
T Consensus 451 ~~~~a~~~~~~~~~~~lG~G~~~~~A~E~aLKl~E~~~i~a~~~~~~Ef~HGP~~~i~~~~~vi~l~~~~~~~~~~~~~~ 530 (604)
T PRK00331 451 IEELAEDFADARNALFLGRGVDYPVALEGALKLKEISYIHAEGYAAGELKHGPIALIDEGMPVVAIAPNDELYEKTKSNI 530 (604)
T ss_pred HHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHHHhhhcccccchhhhccCcHhhhcCCceEEEEEcCchHHHHHHHHH
Confidence 456677788999999999999999999999999999999999998999988764 3567778888877787544 56888
Q ss_pred HHHHHcCCeEEEEecCCCCccccccceEEEcCCCCCccccchhHHHHHHHHHHHHHHHHhhhhc
Q psy1919 546 RYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRI 609 (737)
Q Consensus 546 ~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E~~vasTksftsql~~L~lLal~la~~~~ 609 (737)
+..+++|++++.||+... .+...+|..+.++..++. ...+ ..++.+.+|+.+++..++
T Consensus 531 ~~~~~~g~~v~~I~~~~~-~~~~~~~~~~~~~~~~~~----~~pl-~~~ip~Qlla~~~A~~~G 588 (604)
T PRK00331 531 QEVKARGARVIVIADEGD-EVAEEADDVIEVPEVHEL----LAPL-LYVVPLQLLAYHVALARG 588 (604)
T ss_pred HHHHhCCCEEEEEEcCCc-cccccCCceEECCCCccc----hhHH-HHHHHHHHHHHHHHHHcC
Confidence 899999999999997543 334455677776643321 1122 233456777777766554
No 61
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=99.57 E-value=6.9e-15 Score=148.54 Aligned_cols=111 Identities=18% Similarity=0.184 Sum_probs=87.9
Q ss_pred ccchhHHH----cCCCeEEEEecchhHHHHHHHHH------HHHHhcCCcEEEecccccc---------------ccCCC
Q psy1919 468 IKDYIPEI----RRCRRLMMIGCGTSYHSAVATRQ------LLEELTELPVMVELASDFL---------------DRNTP 522 (737)
Q Consensus 468 l~~~~~~L----~~akrI~ivG~GsS~~aA~~~~~------~l~~~~gi~v~~~~ase~~---------------~~~~~ 522 (737)
++++++.| .+.++|+++|+|+|+..|+.++. ++.+. ++++......... .....
T Consensus 30 i~~a~~~i~~al~~~~rI~i~G~G~S~~~A~~~a~~l~~~~~~~r~-g~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~ 108 (192)
T PRK00414 30 IQRAAVLIADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRP-GYPAIAISDVSHLSCVSNDFGYDYVFSRYVEAV 108 (192)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhcccccCCCC-CceEEecCcHHHHhhhhccCCHHHHHHHHHHHh
Confidence 44455544 45599999999999999999884 34444 5776654322111 11223
Q ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCC
Q psy1919 523 VFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAG 579 (737)
Q Consensus 523 l~~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag 579 (737)
..++|++|+||+||+|++++++++.||++|++||+||+..+|||++.||++|.++..
T Consensus 109 ~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l~~~~~ 165 (192)
T PRK00414 109 GREGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAGLADIEIRVPHF 165 (192)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCCC
Confidence 578999999999999999999999999999999999999999999999999999863
No 62
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=99.56 E-value=3.2e-14 Score=144.70 Aligned_cols=87 Identities=36% Similarity=0.531 Sum_probs=69.0
Q ss_pred ccEEEEcCCCceEEEEccCCchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeCCCCCEEEEEc
Q psy1919 2 KCIALDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHN 81 (737)
Q Consensus 2 ~gIa~~~~~~~~i~~~K~~G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~~~~~~avvhN 81 (737)
-||++.. .......|..+.++++.... ... ...++++|||+||||+|.++..|+|||... .+.++++||
T Consensus 35 ~Gi~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~i~H~R~at~g~~~~~n~hPf~~~-~~~~~~~hN 103 (220)
T cd00352 35 AGIAVYD--GDGLFVEKRAGPVSDVALDL-------LDE-PLKSGVALGHVRLATNGLPSEANAQPFRSE-DGRIALVHN 103 (220)
T ss_pred CCeEEEC--CCceEEEEeccchhhhhhhh-------hhh-ccCCCEEEEEeEeeecCCCCCCCCCCcCcC-CCCEEEEEC
Confidence 3788873 34566777777776654321 112 467899999999999999899999999643 368999999
Q ss_pred ceecchHHHHHHHhcCCC
Q psy1919 82 GIVTNYKELKAFLTNKDH 99 (737)
Q Consensus 82 G~I~N~~~Lr~~L~~~G~ 99 (737)
|+|+|+.+||++|...|+
T Consensus 104 G~i~n~~~l~~~l~~~~~ 121 (220)
T cd00352 104 GEIYNYRELREELEARGY 121 (220)
T ss_pred cEEEcHHHHHHHHHHCCC
Confidence 999999999999999888
No 63
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=99.55 E-value=3.4e-14 Score=152.06 Aligned_cols=141 Identities=25% Similarity=0.276 Sum_probs=108.6
Q ss_pred ccchhHHHcCCCeEEEEecchhHHH-HHHHHHHHHHhcCCcEEE----------------ecc---ccc---cccCCCCC
Q psy1919 468 IKDYIPEIRRCRRLMMIGCGTSYHS-AVATRQLLEELTELPVMV----------------ELA---SDF---LDRNTPVF 524 (737)
Q Consensus 468 l~~~~~~L~~akrI~ivG~GsS~~a-A~~~~~~l~~~~gi~v~~----------------~~a---se~---~~~~~~l~ 524 (737)
++.+++.|.+..+|+++|+|+|... ++++..++-+++ .+... +.. .+. ......+.
T Consensus 47 v~~~~~~l~~gGrl~~~G~G~Sg~l~~~DA~e~~~t~g-~~~~~~~~~iaGg~~a~~~~~e~~Ed~~~~~~~dl~~~~l~ 125 (291)
T TIGR00274 47 VEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFG-VSPELVKGIIAGGECAILHAVEGAEDSTEAGANDLQNIHLT 125 (291)
T ss_pred HHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhhhcC-CCHHHhhHHhcCChHHHhccchhhhcchHHHHHHHHhcCCC
Confidence 4456677889999999999999985 667766665542 32210 000 000 01123467
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCCCCccccc--hhHHHHHHHHHHHHHH
Q psy1919 525 RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVAS--TKAYTSQFISLVMFAL 602 (737)
Q Consensus 525 ~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E~~vas--Tksftsql~~L~lLal 602 (737)
++|++|+||+||+|++++.+++.||++|+++|+||++++|+|++.||+.|.+..++|....+ +++.++|+.+|.+|..
T Consensus 126 ~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~La~~aD~~I~~~~g~E~~~~st~~~s~~aqk~iLd~L~t 205 (291)
T TIGR00274 126 KNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAASEIADIAIETIVGPEILTGSSRLKAGTAQKMVLNMLST 205 (291)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEecCCCCccccccchhhHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999998888865444 4889999999999877
Q ss_pred HHhhhhc
Q psy1919 603 VMCEDRI 609 (737)
Q Consensus 603 ~la~~~~ 609 (737)
.+....+
T Consensus 206 ~~~~~~g 212 (291)
T TIGR00274 206 ASMIKLG 212 (291)
T ss_pred HHHHhcc
Confidence 6654433
No 64
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=99.55 E-value=4.8e-14 Score=131.39 Aligned_cols=112 Identities=27% Similarity=0.349 Sum_probs=89.8
Q ss_pred eEEEEecchhHHHHHHHHHHHHHhcCCcEEEeccccccccCCCCCCCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEe
Q psy1919 480 RLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVT 559 (737)
Q Consensus 480 rI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~~~~~~l~~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaIT 559 (737)
+|+++|+|+|+++|+.++++|.+..++++....+.++ ...+.++|++|++|+||+|++++++++.||++|+++|+||
T Consensus 1 ~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT 77 (119)
T cd05017 1 NIVILGMGGSGIGGDLLESLLLDEAKIPVYVVKDYTL---PAFVDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAIT 77 (119)
T ss_pred CEEEEEcCHHHHHHHHHHHHHHhccCCCEEEecCccC---cCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 5899999999999999999999866788877655433 2256789999999999999999999999999999999999
Q ss_pred cCCCCccccccc----eEEEcCCCCCccccchhHHHHHHHHHHHH
Q psy1919 560 NTVGSSISRESH----CGIHINAGPEIGVASTKAYTSQFISLVMF 600 (737)
Q Consensus 560 n~~~S~La~~AD----~~L~~~ag~E~~vasTksftsql~~L~lL 600 (737)
+ +++|+++|| ..+.++.+.. ...+|++.+..+.+|
T Consensus 78 ~--~~~l~~~~~~~~~~~~~~p~~~~----~r~s~~~~~~~~~~~ 116 (119)
T cd05017 78 S--GGKLLEMAREHGVPVIIIPKGLQ----PRAAFPYLFTALLNI 116 (119)
T ss_pred C--CchHHHHHHHcCCcEEECCCCCC----CceeHHHHHHHHHHH
Confidence 7 457999999 6677665322 235677766554443
No 65
>PRK13937 phosphoheptose isomerase; Provisional
Probab=99.54 E-value=2.9e-14 Score=143.44 Aligned_cols=111 Identities=20% Similarity=0.226 Sum_probs=88.2
Q ss_pred ccchhHHHcCCCeEEEEecchhHHHHHHHH------HHHHHhcCCcEEEec-c--------cccc-------ccCCCCCC
Q psy1919 468 IKDYIPEIRRCRRLMMIGCGTSYHSAVATR------QLLEELTELPVMVEL-A--------SDFL-------DRNTPVFR 525 (737)
Q Consensus 468 l~~~~~~L~~akrI~ivG~GsS~~aA~~~~------~~l~~~~gi~v~~~~-a--------se~~-------~~~~~l~~ 525 (737)
.+++++.|.++++|+++|+|+|+..|+.+. +++.+. ++++.... . .+.. .....+.+
T Consensus 28 a~~i~~~l~~a~rI~i~G~G~S~~~A~~~a~~~~~~~~~~r~-g~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~~ 106 (188)
T PRK13937 28 AEALIEALANGGKILLCGNGGSAADAQHIAAELVGRFKKERP-ALPAIALTTDTSALTAIGNDYGFERVFSRQVEALGRP 106 (188)
T ss_pred HHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhhccccCCCC-CcceEeccCcHHHHHHHhccCCHHHHHHHHHHhhCCC
Confidence 456778889999999999999998776642 333344 57766532 1 1110 11124678
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCC
Q psy1919 526 DDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAG 579 (737)
Q Consensus 526 ~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag 579 (737)
+|++|+||+||+|++++++++.||++|++||+||+.++|||++.||++|.++..
T Consensus 107 ~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~~~~ 160 (188)
T PRK13937 107 GDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLIVPSD 160 (188)
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999998764
No 66
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=99.54 E-value=6.9e-14 Score=150.06 Aligned_cols=164 Identities=23% Similarity=0.254 Sum_probs=120.1
Q ss_pred HHHHHHHHcChHHHHHHHhccccccccccccccccchhHHHcCCCeEEEEecchhHHH-HHHHHHHHHHhcCCcEEE---
Q psy1919 435 YFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGCGTSYHS-AVATRQLLEELTELPVMV--- 510 (737)
Q Consensus 435 ~~M~kEI~EQP~~l~~~l~~~i~~~~~~i~l~~l~~~~~~L~~akrI~ivG~GsS~~a-A~~~~~~l~~~~gi~v~~--- 510 (737)
..|.+|..+.++++...+.. + .+.++.+++.|.+..||+++|+|+|+.. ++++..++-.+ +++...
T Consensus 24 ~~~~~~d~~~~~av~~~~~~-I--------~~a~~~~~~~l~~ggrl~~~GaG~Sg~la~~dA~e~~~tf-~~~~~~~~~ 93 (296)
T PRK12570 24 TLINQEDKKVPLAVEKVLPQ-I--------AQAVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTF-SVSPEMVIG 93 (296)
T ss_pred HHHHHHHHHHHHHHHHhHHH-H--------HHHHHHHHHHHHcCCeEEEECCchhHHHHHHHHHhCcchh-cCCccccee
Confidence 35788888888887665532 1 1234566778899999999999999986 44444443333 222110
Q ss_pred -------------eccccc----c--ccCCCCCCCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccc
Q psy1919 511 -------------ELASDF----L--DRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESH 571 (737)
Q Consensus 511 -------------~~ase~----~--~~~~~l~~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD 571 (737)
..+.+. . .....+.++|++|+||+||+|++++.+++.||++|++||+||++++|+|++.+|
T Consensus 94 ~iagg~~a~~~a~~~~ed~~~~~~~~l~a~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~La~~aD 173 (296)
T PRK12570 94 LIAGGPEAMFTAVEGAEDDPELGAQDLKAIGLTADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSPIAKIAD 173 (296)
T ss_pred eeecCchHhhhcccccCCcHHHHHHHHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCC
Confidence 000011 0 012345789999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCCCCccccc--hhHHHHHHHHHHHHHHHHhhhh
Q psy1919 572 CGIHINAGPEIGVAS--TKAYTSQFISLVMFALVMCEDR 608 (737)
Q Consensus 572 ~~L~~~ag~E~~vas--Tksftsql~~L~lLal~la~~~ 608 (737)
+.|.+..++|....+ +++.++|.++|.+|...+....
T Consensus 174 ~~I~~~~g~E~~~~st~~~s~taqk~vLd~L~t~~~~r~ 212 (296)
T PRK12570 174 IAISPVVGPEVLTGSTRLKSGTAQKMVLNMLSTASMIRL 212 (296)
T ss_pred EEEeeCcCCccccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 999887888865444 4789999999998877665443
No 67
>PRK13938 phosphoheptose isomerase; Provisional
Probab=99.48 E-value=2e-13 Score=138.27 Aligned_cols=110 Identities=22% Similarity=0.215 Sum_probs=88.1
Q ss_pred chhHHHcCCCeEEEEecchhHHHHHHHHHHHHHh-----cCCcEEEeccc--cc--------------cccCCCCCCCCe
Q psy1919 470 DYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEEL-----TELPVMVELAS--DF--------------LDRNTPVFRDDV 528 (737)
Q Consensus 470 ~~~~~L~~akrI~ivG~GsS~~aA~~~~~~l~~~-----~gi~v~~~~as--e~--------------~~~~~~l~~~dl 528 (737)
.+++.+.+.++|+++|.|+|+..|+.+...|... .+++..+.... .+ ........++|+
T Consensus 37 ~~~~~l~~g~rI~i~G~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l~~~~~~~~a~~nd~~~~~~~~~~~~~~~~~~Dl 116 (196)
T PRK13938 37 RLIAGYRAGARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHANSSHLTAVANDYDYDTVFARALEGSARPGDT 116 (196)
T ss_pred HHHHHHHCCCEEEEEeCcHHHHHHHHHHHHcCCCccCCcCccceEEEeCChHHHHHhhccccHHHHHHHHHHhcCCCCCE
Confidence 3455578999999999999999999999988621 12333332221 11 111245788999
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCC
Q psy1919 529 CFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAG 579 (737)
Q Consensus 529 vI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag 579 (737)
+|++|+||+|++++++++.||++|++||+||++++|||+++||++|.++..
T Consensus 117 lI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~v~~~ 167 (196)
T PRK13938 117 LFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLINVPSR 167 (196)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEEeCCC
Confidence 999999999999999999999999999999999999999999999998764
No 68
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=99.46 E-value=4.5e-14 Score=134.43 Aligned_cols=57 Identities=42% Similarity=0.654 Sum_probs=51.7
Q ss_pred cCCCcEEEeEeeccccCCCCCCCCCCeeeCCCCCEEEEEcceecchHHHHHHHhcCCC
Q psy1919 42 SSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHNGIVTNYKELKAFLTNKDH 99 (737)
Q Consensus 42 ~~~~~~~IgHtR~at~g~~~~~nahP~~~~~~~~~avvhNG~I~N~~~Lr~~L~~~G~ 99 (737)
.+.+.++||||||||+|.+...|+||| .+..++++++|||+|+||.+||++|..+|+
T Consensus 9 ~~~~~~~lgH~R~AT~G~~~~~~~hPf-~~~~g~~~~~HNG~i~n~~~L~~~l~~~g~ 65 (133)
T PF13522_consen 9 WLDGEAALGHTRYATVGSPTEENNHPF-SNRDGRIALAHNGNIDNYKELREELGEKGH 65 (133)
T ss_pred hcCCCEEEEEeecCCCCCCCCcCCCCC-cCCCCCEEEEECCeecCHHHHHHHHHHCCC
Confidence 356889999999999999977777999 567788999999999999999999999998
No 69
>PRK02947 hypothetical protein; Provisional
Probab=99.46 E-value=2.9e-13 Score=141.85 Aligned_cols=109 Identities=19% Similarity=0.153 Sum_probs=84.6
Q ss_pred chhHHHcCCCeEEEEecchhHHHHHHHHHHHHHhc-----CCcEEE-----------eccc---cccccCCCCCCCCeEE
Q psy1919 470 DYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEELT-----ELPVMV-----------ELAS---DFLDRNTPVFRDDVCF 530 (737)
Q Consensus 470 ~~~~~L~~akrI~ivG~GsS~~aA~~~~~~l~~~~-----gi~v~~-----------~~as---e~~~~~~~l~~~dlvI 530 (737)
.+++.|.++++|+++|.|.|..+|..+.++|..+. +.+... .... ........+.++|++|
T Consensus 32 lla~~i~~a~~I~i~G~G~S~~vA~~~~~rlg~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~i 111 (246)
T PRK02947 32 LIADSIRNGGLIYVFGTGHSHILAEEVFYRAGGLAPVNPILEPSLMLHEGAVASSYLERVEGYAKAILDRYDIRPGDVLI 111 (246)
T ss_pred HHHHHHHCCCEEEEEcCcHHHHHHHHhccccccCcccCCCCCHHHhccccHHHHHHhhhcccHHHHHHHHcCCCCCCEEE
Confidence 44556788999999999999999999988874221 111110 0000 1111234568899999
Q ss_pred EEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCC-----------CccccccceEEEcCC
Q psy1919 531 FISQSGETADSLMALRYCKARGALIVGVTNTVG-----------SSISRESHCGIHINA 578 (737)
Q Consensus 531 ~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~-----------S~La~~AD~~L~~~a 578 (737)
+||+||+|.+++++++.||++|+++|+||+..+ |+|++.||++|.+..
T Consensus 112 ~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~~~ad~~l~~~~ 170 (246)
T PRK02947 112 VVSNSGRNPVPIEMALEAKERGAKVIAVTSLAYSASVASRHSSGKRLAEVADVVLDNGA 170 (246)
T ss_pred EEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCcccccccccCCCcCchhHhCCEEEEcCC
Confidence 999999999999999999999999999999984 799999999998875
No 70
>PRK13936 phosphoheptose isomerase; Provisional
Probab=99.42 E-value=7.8e-13 Score=134.13 Aligned_cols=112 Identities=21% Similarity=0.242 Sum_probs=90.1
Q ss_pred ccchhHHHcCCCeEEEEecchhHHHHHHHHHHHH------HhcCCcEEEec---------ccccccc-------CCCCCC
Q psy1919 468 IKDYIPEIRRCRRLMMIGCGTSYHSAVATRQLLE------ELTELPVMVEL---------ASDFLDR-------NTPVFR 525 (737)
Q Consensus 468 l~~~~~~L~~akrI~ivG~GsS~~aA~~~~~~l~------~~~gi~v~~~~---------ase~~~~-------~~~l~~ 525 (737)
++.+++.+.++++|+++|.|.|+..|..++..|. +. ++++.... ..+.... .....+
T Consensus 33 ~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~r~~~~r~-g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~~ 111 (197)
T PRK13936 33 VELMVQALLNEGKILACGNGGSAADAQHFSAELLNRFERERP-SLPAIALTTDTSTLTAIANDYSYNEVFSKQVRALGQP 111 (197)
T ss_pred HHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHccCccCCCCc-cceeEecCCcHHHHHHHhhcCCHHHHHHHHHHHhCCC
Confidence 4566778899999999999999999999998887 44 45654321 0111000 123468
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccc---cceEEEcCCCC
Q psy1919 526 DDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRE---SHCGIHINAGP 580 (737)
Q Consensus 526 ~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~---AD~~L~~~ag~ 580 (737)
+|++|+||+||+|++++++++.||++|+++|+||+..+|+|+++ ||++|.++..+
T Consensus 112 ~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v~~~~ 169 (197)
T PRK13936 112 GDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVPAER 169 (197)
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEeCCCc
Confidence 99999999999999999999999999999999999999999995 99999987643
No 71
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=99.42 E-value=1.6e-12 Score=131.55 Aligned_cols=110 Identities=20% Similarity=0.217 Sum_probs=89.5
Q ss_pred chhHHHcCCCeEEEEecchhHHHHHHHHHHHHH-----hcCCcEEEecc-ccccc-c--------------CCCCCCCCe
Q psy1919 470 DYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEE-----LTELPVMVELA-SDFLD-R--------------NTPVFRDDV 528 (737)
Q Consensus 470 ~~~~~L~~akrI~ivG~GsS~~aA~~~~~~l~~-----~~gi~v~~~~a-se~~~-~--------------~~~l~~~dl 528 (737)
.+++.+.+.++|+++|.|.|...|+.++..|.. ..++++..... ..... . .....++|+
T Consensus 33 ~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~and~~~~~~f~~ql~~~~~~gDv 112 (196)
T PRK10886 33 TLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHAGDV 112 (196)
T ss_pred HHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhccccHHHHHHHHHHHcCCCCCE
Confidence 345566889999999999999999999998852 23677775421 11110 0 123678999
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccc---cceEEEcCCC
Q psy1919 529 CFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRE---SHCGIHINAG 579 (737)
Q Consensus 529 vI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~---AD~~L~~~ag 579 (737)
+|+||.||+|++++++++.||++|++||+||+.++|+|+++ +|..|.++..
T Consensus 113 li~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l~~~~D~~i~ip~~ 166 (196)
T PRK10886 113 LLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSH 166 (196)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhccccCCEEEEcCCC
Confidence 99999999999999999999999999999999999999997 7999999864
No 72
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.39 E-value=3.8e-13 Score=141.74 Aligned_cols=88 Identities=19% Similarity=0.113 Sum_probs=69.0
Q ss_pred ccEEEEcCCCceEEEEccCCchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeCCCCCEEEEEc
Q psy1919 2 KCIALDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHN 81 (737)
Q Consensus 2 ~gIa~~~~~~~~i~~~K~~G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~~~~~~avvhN 81 (737)
-||++..+++..+.++|++|.+.+....... +. .+.++++|||+||||+|..+..|+|||.. ++++++||
T Consensus 44 wGia~~~~~~~~~~~~k~~~~~~~~~~~~~~------~~-~~~~~~~l~H~R~At~G~~~~~n~hPf~~---~~~~~~HN 113 (257)
T cd01908 44 WGIGWYEGKGGRPFRYRSPLPAWSDINLESL------AR-PIKSPLVLAHVRAATVGPVSLENCHPFTR---GRWLFAHN 113 (257)
T ss_pred cEEEEecCCCCeeeeeCCCCCCcCCcchHHh------hc-cccccEEEEEEecCCCCCCccccCCCccc---CCEEEEeC
Confidence 3899984335679999999544333222111 11 46789999999999999888999999963 47999999
Q ss_pred ceecchHHHHHHHhcCC-C
Q psy1919 82 GIVTNYKELKAFLTNKD-H 99 (737)
Q Consensus 82 G~I~N~~~Lr~~L~~~G-~ 99 (737)
|+|+|+.+||..|..+| +
T Consensus 114 G~i~n~~~l~~~l~~~~~~ 132 (257)
T cd01908 114 GQLDGFRLLRRRLLRLLPR 132 (257)
T ss_pred CccCCcchhhHHHHhcCcc
Confidence 99999999999999988 5
No 73
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=99.38 E-value=9.2e-13 Score=126.55 Aligned_cols=89 Identities=42% Similarity=0.724 Sum_probs=77.2
Q ss_pred HHHHHHHHHcCCCeEEEEecCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCeEEEEEcCCchhHHHHH
Q psy1919 638 EVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMN 717 (737)
Q Consensus 638 ~~~~lA~~l~~~~~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPialid~~t~Vi~l~~~d~~~~k~~~ 717 (737)
+++++++.+.+.++++++|+ |.+|++|+|+++||+|+.++++.+++.+||+|||...+++++++|++.+.+++.+++..
T Consensus 2 ~~~~~a~~~~~~~~i~~~G~-G~s~~~a~e~~~kl~e~~~i~~~~~~~~e~~hg~~~~~~~~~~vi~is~~g~t~~~~~~ 80 (153)
T cd05009 2 DIKELAEKLKEAKSFYVLGR-GPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIALVDEGTPVIFLAPEDRLEEKLES 80 (153)
T ss_pred hHHHHHHHHhccCcEEEEcC-CCCHHHHHHHHHHHHHHHhhcceeccHHHhccChhhhccCCCcEEEEecCChhHHHHHH
Confidence 45678888999999999999 99999999999999999999999999999999999999999999999988877665554
Q ss_pred HHHHh---hhccc
Q psy1919 718 ALLQV---IFTIF 727 (737)
Q Consensus 718 ~l~ei---~aR~~ 727 (737)
.++.. +++.+
T Consensus 81 ~~~~~~~~~~~vi 93 (153)
T cd05009 81 LIKEVKARGAKVI 93 (153)
T ss_pred HHHHHHHcCCEEE
Confidence 44444 45543
No 74
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=99.28 E-value=2.8e-11 Score=124.49 Aligned_cols=74 Identities=24% Similarity=0.320 Sum_probs=59.9
Q ss_pred CchhhHHHHHHhhh-hcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeCCCCCEEEEEcceecchHHHHHHHhcCCC
Q psy1919 21 GKVSALEDEIQTRL-KELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHNGIVTNYKELKAFLTNKDH 99 (737)
Q Consensus 21 G~v~~l~~~~~~~~-~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~~~~~~avvhNG~I~N~~~Lr~~L~~~G~ 99 (737)
..+..+...++.|| +..... ..++++|||+||+|+|.. .+.||+.. .++.++++|||+|+|+.+|+++|..+|+
T Consensus 17 ~~~~~~~~~l~hRGpd~~~~~--~~~~~~lgh~rl~~~~~~--~~~qP~~~-~~~~~~~~~nG~i~N~~~L~~~l~~~~~ 91 (220)
T cd00712 17 ATLERMLDALAHRGPDGSGIW--IDEGVALGHRRLSIIDLS--GGAQPMVS-EDGRLVLVFNGEIYNYRELRAELEALGH 91 (220)
T ss_pred HHHHHHHHHHhccCCCCCCEE--EECCEEEEEEeeeecCcc--cCCCCeEe-CCCCEEEEEEEEEeCHHHHHHHHHhcCC
Confidence 44567778888887 322222 346899999999999964 79999964 4578999999999999999999999998
No 75
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=99.25 E-value=2.1e-11 Score=105.99 Aligned_cols=79 Identities=29% Similarity=0.355 Sum_probs=71.3
Q ss_pred EEEEecchhHHHHHHHHHHHHHhcCCcEEEeccccccccC--CCCCCCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEE
Q psy1919 481 LMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRN--TPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGV 558 (737)
Q Consensus 481 I~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~~~~--~~l~~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaI 558 (737)
|+++|+|+|+.+|+.++++|.++.+.++....+.++.+.. ..++++|++|++|+||+|++++++++.+|++|+++|+|
T Consensus 1 i~i~g~G~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~i 80 (87)
T cd04795 1 IFVIGIGGSGAIAAYFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRTEELLAALEIAKELGIPVIAI 80 (87)
T ss_pred CEEEEcCHHHHHHHHHHHHHhcccCCceEEeCCcHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEE
Confidence 6899999999999999999999867888887777765443 45688999999999999999999999999999999999
Q ss_pred e
Q psy1919 559 T 559 (737)
Q Consensus 559 T 559 (737)
|
T Consensus 81 t 81 (87)
T cd04795 81 T 81 (87)
T ss_pred e
Confidence 9
No 76
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=99.20 E-value=2e-11 Score=128.38 Aligned_cols=84 Identities=18% Similarity=0.180 Sum_probs=64.0
Q ss_pred cEEEEcCC-CceEEEEccCCchhh---HHHHHHhhhhcccccccCCCcEEEeEeeccccCC-CCCCCCCCeeeCCCCCEE
Q psy1919 3 CIALDAAD-GVDIAIVKKSGKVSA---LEDEIQTRLKELNVEESSATHVGIAHTRWATHGA-PSEVNSHPQRSDIDQTFC 77 (737)
Q Consensus 3 gIa~~~~~-~~~i~~~K~~G~v~~---l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~-~~~~nahP~~~~~~~~~a 77 (737)
||++..+. +..+.++|+++.+.+ +.. +.. .+.+.++|||+||||.|. .+..|+|||. .+.++
T Consensus 46 Gia~~~~~~~~~~~~~k~~~pa~~d~~l~~-l~~---------~~~s~~~i~HvR~AT~G~~~~~~N~hPf~---~g~~~ 112 (251)
T TIGR03442 46 GVGWYDSGKDTVPFRYRSTQPIWNDINFAS-LAR---------YVESGCVLAAVRSATVGMAIDESACAPFS---DGRWL 112 (251)
T ss_pred eEEEecCCCCCCceEEeCCCccccChhHHH-HHh---------hcccceEEEEeeeCCCCCCcchhcCCCCC---cCCEE
Confidence 89998432 236899999998754 322 211 357889999999999996 4668999996 36899
Q ss_pred EEEcceecchH-----HHHHHHhcCCC
Q psy1919 78 VVHNGIVTNYK-----ELKAFLTNKDH 99 (737)
Q Consensus 78 vvhNG~I~N~~-----~Lr~~L~~~G~ 99 (737)
++|||+|.||. +||++|..+|+
T Consensus 113 ~aHNG~i~n~~~~~r~~L~~~l~~~~~ 139 (251)
T TIGR03442 113 FSHNGFVDNFRQTLYRPLRDRLPDIFY 139 (251)
T ss_pred EEeCCccCCchhhhhHHHHhcCChhhc
Confidence 99999999997 56677766663
No 77
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=99.16 E-value=8.9e-11 Score=120.86 Aligned_cols=139 Identities=30% Similarity=0.352 Sum_probs=104.0
Q ss_pred cccchhHHHcCCCeEEEEecchhHHHHHHHHHHHHHhcCCc---EE----------------Eeccccc---cccCCCCC
Q psy1919 467 GIKDYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEELTELP---VM----------------VELASDF---LDRNTPVF 524 (737)
Q Consensus 467 ~l~~~~~~L~~akrI~ivG~GsS~~aA~~~~~~l~~~~gi~---v~----------------~~~ase~---~~~~~~l~ 524 (737)
.++.+++.+++..|++.+|.|+|...+..=+.-.--..|++ +. ++...+. ......++
T Consensus 49 Av~~~~~~l~~GGRLiY~GAGTSGRLGvlDAsEcPPTfgv~~e~ViglIAGG~~A~~~avEGaED~~~~g~~dl~~~~lt 128 (298)
T COG2103 49 AVDIIAAALKQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVIGLIAGGEEAILKAVEGAEDDEELGEADLKNIGLT 128 (298)
T ss_pred HHHHHHHHHHcCCeEEEEcCCcccchhccchhhCCCCcCCChhHeeeeecCCHHHHHHhhcCccccHHHHHHHHHHcCCC
Confidence 35567778899999999999999876653221000000111 00 0111111 11224567
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCCCCccccch--hHHHHHHHHHHHHHH
Q psy1919 525 RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVAST--KAYTSQFISLVMFAL 602 (737)
Q Consensus 525 ~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E~~vasT--ksftsql~~L~lLal 602 (737)
++|++|.|+-||.|+-++.+++.||+.||.||+|+|+++|++++.||+.|..-.|||....+| |+-|+|-++|.||.-
T Consensus 129 ~~DvvvgIaASGrTPYvigal~yAr~~Ga~Ti~iacNp~s~i~~~Ad~~I~~~vGPEvltGSTRlKaGTAQKlvLNMlST 208 (298)
T COG2103 129 AKDVVVGIAASGRTPYVIGALEYARQRGATTIGIACNPGSAISRIADIAIEPVVGPEVLTGSTRLKAGTAQKLVLNMLST 208 (298)
T ss_pred cCCEEEEEecCCCCchhhHHHHHHHhcCCeEEEeecCCCchhhhhcCcceeeccCccccccccccccchHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999776665 889999999999865
Q ss_pred HHh
Q psy1919 603 VMC 605 (737)
Q Consensus 603 ~la 605 (737)
...
T Consensus 209 ~~M 211 (298)
T COG2103 209 GVM 211 (298)
T ss_pred HHH
Confidence 443
No 78
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=99.14 E-value=9.4e-11 Score=130.05 Aligned_cols=77 Identities=17% Similarity=0.222 Sum_probs=64.0
Q ss_pred CCceEEEEccCCchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeCCCCCEEEEEcceecchHH
Q psy1919 10 DGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHNGIVTNYKE 89 (737)
Q Consensus 10 ~~~~i~~~K~~G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~~~~~~avvhNG~I~N~~~ 89 (737)
-+.+..|+|++|...+|.+.... ...+ .+.+.++|||+|+||++.|++.++|||. .|+|||+|.|+..
T Consensus 171 ls~~~iVyKGm~~~~~v~~~Y~D----L~~~-~~~s~~al~H~RfSTNT~p~W~~AqPfr-------~laHNGEInT~~g 238 (413)
T cd00713 171 LSSRTIVYKGMLLPEQLGQFYPD----LQDP-RFESAFALVHSRFSTNTFPSWPLAQPFR-------YLAHNGEINTIRG 238 (413)
T ss_pred cccceEEEeccccHHHHHHhccc----cCcc-cceEEEEEEEEecCCCCCCCcccCCcce-------eEEEcccccCHHH
Confidence 35689999999997777654321 2233 5789999999999999999999999994 5999999999999
Q ss_pred HHHHHhcCC
Q psy1919 90 LKAFLTNKD 98 (737)
Q Consensus 90 Lr~~L~~~G 98 (737)
+|+++.++.
T Consensus 239 nr~~m~are 247 (413)
T cd00713 239 NRNWMRARE 247 (413)
T ss_pred HHHHHHHhh
Confidence 999998764
No 79
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=99.12 E-value=1.3e-09 Score=126.12 Aligned_cols=91 Identities=16% Similarity=0.153 Sum_probs=67.9
Q ss_pred CccEEEEcCCCceEEEEccCCchhhHHHHHHhhh-hcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeCCCCCEEEE
Q psy1919 1 MKCIALDAADGVDIAIVKKSGKVSALEDEIQTRL-KELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVV 79 (737)
Q Consensus 1 ~~gIa~~~~~~~~i~~~K~~G~v~~l~~~~~~~~-~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~~~~~~avv 79 (737)
|.||+-.-..+ +.. -..-.+..+.+.+.+|| +....- ...++++||+|+++.|... ..||+.. .+++++||
T Consensus 1 MCGI~g~~~~~-~~~--~~~~~~~~m~~~l~hRGPD~~g~~--~~~~~~~gh~rL~i~d~~~--g~QP~~~-~~~~~~l~ 72 (542)
T COG0367 1 MCGIAGILNFK-NLI--DAKSIIEEMTKLLRHRGPDDSGVW--ISLNALLGHRRLSIVDLSG--GRQPMIK-EGGKYAIV 72 (542)
T ss_pred CCceeeeeccc-ccc--cchHHHHHHHHHhhccCCCccccE--ecCCceeeeeEEEEecccc--CCCCccc-CCCcEEEE
Confidence 77887653211 110 11344667778888998 433332 3578999999999999764 7899963 56779999
Q ss_pred EcceecchHHHHHHHhcCCC
Q psy1919 80 HNGIVTNYKELKAFLTNKDH 99 (737)
Q Consensus 80 hNG~I~N~~~Lr~~L~~~G~ 99 (737)
+||+||||.+||++|..+||
T Consensus 73 ~NGEIYN~~elr~~l~~~g~ 92 (542)
T COG0367 73 YNGEIYNVEELRKELREAGY 92 (542)
T ss_pred ECCEeeeHHHHHHHHHhcCc
Confidence 99999999999999999999
No 80
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=99.12 E-value=3.6e-10 Score=131.83 Aligned_cols=74 Identities=22% Similarity=0.186 Sum_probs=57.6
Q ss_pred hhhHHHHHHhhh-hccccccc---CCCcEEEeEeeccccCCCCCCCCCCeeeCCCCCEEEEEcceecchHHHHHHHhcCC
Q psy1919 23 VSALEDEIQTRL-KELNVEES---SATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHNGIVTNYKELKAFLTNKD 98 (737)
Q Consensus 23 v~~l~~~~~~~~-~~~~l~~~---~~~~~~IgHtR~at~g~~~~~nahP~~~~~~~~~avvhNG~I~N~~~Lr~~L~~~G 98 (737)
+..+.+.+++|| +....-.. -.+.+++||+|+|+.+.. .+.||+. +.++++++||||+||||.+||++|..+|
T Consensus 21 ~~~m~~~l~HRGPD~~g~~~~~~~~~~~~~lgh~RLsIvd~~--~g~QP~~-~~d~~~~lv~NGEIYN~~eLr~~L~~~g 97 (586)
T PTZ00077 21 ALELSKRLRHRGPDWSGIIVLENSPGTYNILAHERLAIVDLS--DGKQPLL-DDDETVALMQNGEIYNHWEIRPELEKEG 97 (586)
T ss_pred HHHHHHHHhCCCCCcCCEEEeccCCCCcEEEEeccceecCCC--CCCCCcC-CCCCCEEEEEEEEEcCHHHHHHHHHhcC
Confidence 345567888898 33332200 014689999999999974 3889995 5678899999999999999999999999
Q ss_pred C
Q psy1919 99 H 99 (737)
Q Consensus 99 ~ 99 (737)
|
T Consensus 98 ~ 98 (586)
T PTZ00077 98 Y 98 (586)
T ss_pred C
Confidence 9
No 81
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=99.11 E-value=4e-10 Score=110.44 Aligned_cols=103 Identities=22% Similarity=0.311 Sum_probs=79.2
Q ss_pred ccchhHHHc---CCCeEEEEecchhHHHHHHHHHHHHHhc--CCcEEEecc--cccccc-CCCC-CCCCeEEEEcCCCCc
Q psy1919 468 IKDYIPEIR---RCRRLMMIGCGTSYHSAVATRQLLEELT--ELPVMVELA--SDFLDR-NTPV-FRDDVCFFISQSGET 538 (737)
Q Consensus 468 l~~~~~~L~---~akrI~ivG~GsS~~aA~~~~~~l~~~~--gi~v~~~~a--se~~~~-~~~l-~~~dlvI~ISqSGeT 538 (737)
++++++.+. ++++|+++|+|+|+..++.+.+.+.+.. +.++.+... .++... ...+ .+++++|++|.||+|
T Consensus 7 i~~~~~~i~~~~~~~~iv~~GiGGS~lg~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~~tlvi~iSkSG~T 86 (158)
T cd05015 7 IKEFAEKVRSGKKITDVVVIGIGGSDLGPRAVYEALKPYFKGGLRLHFVSNVDPDDLAELLKKLDPETTLFIVISKSGTT 86 (158)
T ss_pred HHHHHHHHhcCCCCCEEEEEecCccHHHHHHHHHHHHhhccCCceEEEEeCCCHHHHHHHHHhCCcccEEEEEEECCcCC
Confidence 445555553 4899999999999998888777777654 566555544 333222 2233 478999999999999
Q ss_pred HHHHHHHHHHHH---------cCCeEEEEecCCCCccccccc
Q psy1919 539 ADSLMALRYCKA---------RGALIVGVTNTVGSSISRESH 571 (737)
Q Consensus 539 ~etl~al~~AKe---------~Ga~tIaITn~~~S~La~~AD 571 (737)
.||+.+++.+++ .++++|+||+ +++++.+.|+
T Consensus 87 ~Et~~~~~~a~~~l~~~~~~~~~~~~vaiT~-~~s~l~~~a~ 127 (158)
T cd05015 87 LETLANARLAREWLEEAGGDDLAKHFVAITD-NGSGLLKKAG 127 (158)
T ss_pred HHHHHHHHHHHHHHHHhccccccceEEEEcC-CChHHHHHcC
Confidence 999999999999 8999999999 7889987665
No 82
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=99.10 E-value=5.9e-10 Score=107.99 Aligned_cols=109 Identities=20% Similarity=0.218 Sum_probs=86.9
Q ss_pred chhHHHcCCCeEEEEecchhHHHHHHHH------HHHHHhcCCcEEEec---------ccccccc-------CCCCCCCC
Q psy1919 470 DYIPEIRRCRRLMMIGCGTSYHSAVATR------QLLEELTELPVMVEL---------ASDFLDR-------NTPVFRDD 527 (737)
Q Consensus 470 ~~~~~L~~akrI~ivG~GsS~~aA~~~~------~~l~~~~gi~v~~~~---------ase~~~~-------~~~l~~~d 527 (737)
.+++.+.+.++|+++|.|+|+.-|+.+. |.++|- ++|+.+.+ +.||-|. ...-.++|
T Consensus 33 ~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~-~lpaIaLt~dsS~lTai~NDy~yd~vFsRqveA~g~~GD 111 (176)
T COG0279 33 LLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERP-SLPAIALSTDSSVLTAIANDYGYDEVFSRQVEALGQPGD 111 (176)
T ss_pred HHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCC-CCCeeEeecccHHHhhhhccccHHHHHHHHHHhcCCCCC
Confidence 4566788999999999999988887664 334443 57766543 1233221 12335799
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCC
Q psy1919 528 VCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAG 579 (737)
Q Consensus 528 lvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag 579 (737)
++|+||-||+++.+++|++.||++|++||++|...+..++.++|+.|.+|..
T Consensus 112 vLigISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~~~~D~~i~VPs~ 163 (176)
T COG0279 112 VLIGISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLAGLLDVEIRVPST 163 (176)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCcccccccceEEecCCC
Confidence 9999999999999999999999999999999999999999999999999864
No 83
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=99.08 E-value=8.3e-11 Score=129.37 Aligned_cols=77 Identities=25% Similarity=0.388 Sum_probs=64.9
Q ss_pred CceEEEEccCCchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeCCCCCEEEEEcceecchHHH
Q psy1919 11 GVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHNGIVTNYKEL 90 (737)
Q Consensus 11 ~~~i~~~K~~G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~~~~~~avvhNG~I~N~~~L 90 (737)
+.+..|+|+.|...+|.+... .+... .+.++++|||+||+|+|.|+..|||||. +++|||+|.|+..+
T Consensus 166 S~~tivYKg~~~~~~l~~~y~----Dl~~~-~~~s~~~i~H~RysTnt~p~w~~AqPf~-------~laHNGeInt~~~n 233 (361)
T PF00310_consen 166 SSRTIVYKGMGTPEQLAEFYP----DLQDE-DFKSHFAIGHQRYSTNTFPSWENAQPFR-------ALAHNGEINTIRGN 233 (361)
T ss_dssp ESSEEEEEECC-GGGHHHHCC----GGGCT-TEEBSEEEEEEEE-SSSSCSGGGSSSEE-------EEEEEEEETTHHHH
T ss_pred CcchhhhhhccCHHHHHHHHH----hhccc-cccceEEEEEEecCCCCCCcchhcChHH-------HhhhccccccHHHH
Confidence 467899999999999986532 12333 5789999999999999999999999994 89999999999999
Q ss_pred HHHHhcCCC
Q psy1919 91 KAFLTNKDH 99 (737)
Q Consensus 91 r~~L~~~G~ 99 (737)
|++|.++|.
T Consensus 234 ~~~l~~r~~ 242 (361)
T PF00310_consen 234 RNWLEARGY 242 (361)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHhhcc
Confidence 999999887
No 84
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=99.06 E-value=5.2e-10 Score=130.25 Aligned_cols=69 Identities=28% Similarity=0.284 Sum_probs=55.2
Q ss_pred hhhHHHHHHhhh-hcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeCCCCCEEEEEcceecchHHHHHHHhc
Q psy1919 23 VSALEDEIQTRL-KELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHNGIVTNYKELKAFLTN 96 (737)
Q Consensus 23 v~~l~~~~~~~~-~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~~~~~~avvhNG~I~N~~~Lr~~L~~ 96 (737)
+.++.+.+++|| +....- ..+++++||+|+|+.|. ..+.||+. +.++++++||||+||||.+||++|..
T Consensus 21 ~~~m~~~l~hRGPD~~g~~--~~~~~~Lgh~RLsI~d~--~~g~QP~~-~~~~~~~lv~NGEIyN~~eLr~~L~~ 90 (578)
T PLN02549 21 VLELSRRLRHRGPDWSGLY--GNEDCYLAHERLAIMDP--ESGDQPLY-NEDKTIVVTANGEIYNHKELREKLKL 90 (578)
T ss_pred HHHHHHHhcCcCCCccCEE--EeCCeEEEEeeeeEeCC--CCCCCCcC-cCCCCEEEEEEEEEEcHHHHHHHHHh
Confidence 456777888888 333322 24678999999999995 46899995 45778999999999999999999975
No 85
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=99.06 E-value=3.6e-10 Score=132.37 Aligned_cols=75 Identities=25% Similarity=0.317 Sum_probs=60.9
Q ss_pred CchhhHHHHHHhhh-hcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeCCCCCEEEEEcceecchHHHHHHHhcCCC
Q psy1919 21 GKVSALEDEIQTRL-KELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHNGIVTNYKELKAFLTNKDH 99 (737)
Q Consensus 21 G~v~~l~~~~~~~~-~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~~~~~~avvhNG~I~N~~~Lr~~L~~~G~ 99 (737)
..+..+.+.+.+|| +.... -..+++++||+||++.+. +..+.||+. +.++++++||||+||||.+||++|...|+
T Consensus 18 ~~~~~m~~~l~hRGPD~~g~--~~~~~~~lgh~rl~i~~~-~~~~~QP~~-~~~~~~~~v~nGeiyN~~eL~~~l~~~g~ 93 (589)
T TIGR03104 18 AAVVRMLAVLAPRGPDAGGV--HAQGPVALGHRRLKIIDL-SEASQQPMV-DAELGLALVFNGCIYNYRELRAELEALGY 93 (589)
T ss_pred HHHHHHHHhhcCCCCCcCCc--EecCCEEEEEEeeEecCC-CcCCCCCeE-CCCCCEEEEECCEecCHHHHHHHHHhcCC
Confidence 44667778888887 33322 135789999999999985 456899995 66778999999999999999999999999
No 86
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=99.03 E-value=5.4e-10 Score=131.94 Aligned_cols=73 Identities=25% Similarity=0.304 Sum_probs=59.4
Q ss_pred chhhHHHHHHhhh-hcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeCCCCCEEEEEcceecchHHHHHHHhcCCC
Q psy1919 22 KVSALEDEIQTRL-KELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHNGIVTNYKELKAFLTNKDH 99 (737)
Q Consensus 22 ~v~~l~~~~~~~~-~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~~~~~~avvhNG~I~N~~~Lr~~L~~~G~ 99 (737)
.+..+.+.+.+|| +.... -..++++|||+|+++.+. ..+.||+. ++++++++||||+||||.+||++|...|+
T Consensus 20 ~~~~m~~~l~hRGpD~~g~--~~~~~~~lgh~rl~i~d~--~~~~qP~~-~~~~~~~lv~nGei~N~~eL~~~l~~~g~ 93 (628)
T TIGR03108 20 LLRRMNDAQAHRGPDGGGV--HVEPGIGLGHRRLSIIDL--SGGQQPLF-NEDGSVVVVFNGEIYNFQELVAELQALGH 93 (628)
T ss_pred HHHHHHHHhcCCCCCccCe--EeeCCEEEEEEeeeecCC--CCCCCCcC-cCCCCEEEEECCeECCHHHHHHHHHhcCC
Confidence 3566777788887 33222 135789999999999985 36889995 66788999999999999999999999999
No 87
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=99.02 E-value=1.5e-09 Score=126.06 Aligned_cols=73 Identities=21% Similarity=0.215 Sum_probs=58.5
Q ss_pred CchhhHHHHHHhhh-hcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeCCCCCEEEEEcceecchHHHHHHHhcCCC
Q psy1919 21 GKVSALEDEIQTRL-KELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHNGIVTNYKELKAFLTNKDH 99 (737)
Q Consensus 21 G~v~~l~~~~~~~~-~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~~~~~~avvhNG~I~N~~~Lr~~L~~~G~ 99 (737)
..+..+.+.+++|| +....- ..+++++||+|+|+.+. ..+.||+. +.++.++||+||+||||.+||++|... +
T Consensus 19 ~~~~~m~~~l~hRGPD~~g~~--~~~~~~lgh~RLsIid~--~~g~QP~~-~~~~~~~lv~NGEIyN~~eLr~~L~~~-~ 92 (554)
T PRK09431 19 KKALEMSRLMRHRGPDWSGIY--ASDNAILGHERLSIVDV--NGGAQPLY-NEDGTHVLAVNGEIYNHQELRAELGDK-Y 92 (554)
T ss_pred HHHHHHHHHhhCCCCCcCCEE--EeCCeEEEEEEeeecCC--CCCCCCCC-cCCCCEEEEEEEEEecHHHHHHHHhcc-C
Confidence 34667788889998 333322 34678999999999996 35889995 567889999999999999999999875 7
No 88
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=98.93 E-value=1.9e-09 Score=123.04 Aligned_cols=73 Identities=23% Similarity=0.306 Sum_probs=58.6
Q ss_pred hhhHHHHHHhhh-hcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeCCCCCEEEEEcceecchHHHHHHHhcCCC
Q psy1919 23 VSALEDEIQTRL-KELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHNGIVTNYKELKAFLTNKDH 99 (737)
Q Consensus 23 v~~l~~~~~~~~-~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~~~~~~avvhNG~I~N~~~Lr~~L~~~G~ 99 (737)
+..+.+.+.+|| +....- ...+++++||+|+++.+.. .+.||+. +.++++++|+||+||||.+||++|..+|+
T Consensus 18 ~~~m~~~l~hRGPD~~g~~-~~~~~~~lgh~rl~i~d~~--~~~qP~~-~~~~~~~lv~nGeiyN~~eL~~~l~~~g~ 91 (467)
T TIGR01536 18 ILRMSDTIAHRGPDASGIE-YKDGNAILGHRRLAIIDLS--GGAQPMS-NEGKTYVIVFNGEIYNHEELREELEAKGY 91 (467)
T ss_pred HHHHHHHhhCcCCCcCCcE-EccCCEEEEEEEeEEeCCC--CCCCeeE-CCCCCEEEEEeeEEcCHHHHHHHHHhcCC
Confidence 556677888888 333221 0357899999999999974 3489995 56778999999999999999999999999
No 89
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=98.89 E-value=9.9e-09 Score=101.94 Aligned_cols=125 Identities=24% Similarity=0.265 Sum_probs=87.9
Q ss_pred cchhHHHcCCCeEEEEecchhHHHHHHHHHHHHHhcC-CcEEEec--------cccccc----------cCCCCCCCCeE
Q psy1919 469 KDYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEELTE-LPVMVEL--------ASDFLD----------RNTPVFRDDVC 529 (737)
Q Consensus 469 ~~~~~~L~~akrI~ivG~GsS~~aA~~~~~~l~~~~g-i~v~~~~--------ase~~~----------~~~~l~~~dlv 529 (737)
+.+++.+.+..+|++||||.|+..|....|+---+.- .|+.+.. ++.++. ....+.++|++
T Consensus 29 ~lVAesi~n~g~i~~FG~GHShm~aeEv~yRAGGLa~~~pIL~~plMLhega~ass~lErieg~~~~~l~~~~i~~~DVl 108 (243)
T COG4821 29 KLVAESIMNDGRIYVFGSGHSHMLAEEVFYRAGGLAPIKPILMEPLMLHEGAVASSYLERIEGYAKLFLHRLQIRPNDVL 108 (243)
T ss_pred HHHHHHHhcCCEEEEecCchHHHHHHHHHhhcCCccccccccCChhhhcccccccchhHhhhhHHHHHHHHhcCCCCCEE
Confidence 4566778899999999999999999887664322211 1111111 111110 11245679999
Q ss_pred EEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCC-----------ccccccceEEEcCCC----------CCccccchh
Q psy1919 530 FFISQSGETADSLMALRYCKARGALIVGVTNTVGS-----------SISRESHCGIHINAG----------PEIGVASTK 588 (737)
Q Consensus 530 I~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S-----------~La~~AD~~L~~~ag----------~E~~vasTk 588 (737)
|+||.||.++--+++++++|++||++|++|+..-| .|...+|++|.-.+. -|..++.|.
T Consensus 109 iviSnSGrNpvpie~A~~~rekGa~vI~vTSl~ySq~~~SRh~SGK~Ly~~aDvVlDN~av~GDAvl~~a~~ei~~~ptS 188 (243)
T COG4821 109 IVISNSGRNPVPIEVAEYAREKGAKVIAVTSLDYSQSQASRHKSGKLLYEFADVVLDNGAVKGDAVLEIAGSEIKVGPTS 188 (243)
T ss_pred EEEeCCCCCCcchHHHHHHHhcCCeEEEEehhhhhhhchhcccchhHHhhhcceeeeCCCcccchheeecCccccccCcc
Confidence 99999999999999999999999999999997666 477789998876541 233455666
Q ss_pred HHHHH
Q psy1919 589 AYTSQ 593 (737)
Q Consensus 589 sftsq 593 (737)
+++.-
T Consensus 189 t~~g~ 193 (243)
T COG4821 189 TVSGV 193 (243)
T ss_pred hhHHH
Confidence 66543
No 90
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=98.86 E-value=5.2e-09 Score=100.24 Aligned_cols=91 Identities=25% Similarity=0.268 Sum_probs=63.8
Q ss_pred chhHHHcCCCeEEEEecchhHHHHHHHHHHHHHhcC-----CcEEEeccc-------cc---------cccCCCCCCCCe
Q psy1919 470 DYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEELTE-----LPVMVELAS-------DF---------LDRNTPVFRDDV 528 (737)
Q Consensus 470 ~~~~~L~~akrI~ivG~GsS~~aA~~~~~~l~~~~g-----i~v~~~~as-------e~---------~~~~~~l~~~dl 528 (737)
.+++.+.+-++|+++|+|+|...|+.+.+.+..... .+....... ++ ......+.++|+
T Consensus 27 ~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gDv 106 (138)
T PF13580_consen 27 LIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLALYDIRPGDV 106 (138)
T ss_dssp HHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHHTT--TT-E
T ss_pred HHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHHHcCCCCCCE
Confidence 456678899999999999999999998888876532 233332110 11 001123678999
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHcCCeEEEEec
Q psy1919 529 CFFISQSGETADSLMALRYCKARGALIVGVTN 560 (737)
Q Consensus 529 vI~ISqSGeT~etl~al~~AKe~Ga~tIaITn 560 (737)
+|+||.||+|+.++++++.||++|++||+||+
T Consensus 107 li~iS~SG~s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 107 LIVISNSGNSPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp EEEEESSS-SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 99999999999999999999999999999995
No 91
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=98.80 E-value=2e-09 Score=101.29 Aligned_cols=47 Identities=32% Similarity=0.462 Sum_probs=19.7
Q ss_pred EeeccccCCCCCCCCCCeeeCCCCCEEEEEcceecchHHHHHHHhcCCC
Q psy1919 51 HTRWATHGAPSEVNSHPQRSDIDQTFCVVHNGIVTNYKELKAFLTNKDH 99 (737)
Q Consensus 51 HtR~at~g~~~~~nahP~~~~~~~~~avvhNG~I~N~~~Lr~~L~~~G~ 99 (737)
|+||+|.+ +..+.||+..+.+++++++|||+|||+++|+++|..+|+
T Consensus 1 h~rl~~~~--~~~~~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l~~~g~ 47 (125)
T PF13537_consen 1 HVRLSTDD--SDEGAQPFVSSEDGELVLVFNGEIYNREELRRELEERGH 47 (125)
T ss_dssp --------------------------EEEEEEEES-HHHHHHTSSSS--
T ss_pred Cccccccc--ccccccccccccccCEEEEEEEEEEChHHHHHHhhhccc
Confidence 99999954 467899996446788999999999999999999999998
No 92
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=98.73 E-value=4.3e-09 Score=111.99 Aligned_cols=79 Identities=24% Similarity=0.268 Sum_probs=44.6
Q ss_pred cEEEEcCCCceEEEEccCC--chhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeC-CCCCEEEE
Q psy1919 3 CIALDAADGVDIAIVKKSG--KVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSD-IDQTFCVV 79 (737)
Q Consensus 3 gIa~~~~~~~~i~~~K~~G--~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~-~~~~~avv 79 (737)
||+++. +....++|.+. .-+.+...+... .+.+.+.|+|+|.||.|..+..|+|||... .++.++++
T Consensus 37 Giawy~--~~~~~~~k~~~pa~~~~~~~~l~~~--------~i~S~~~laHvR~AT~G~v~~~N~HPF~~~~~g~~w~Fa 106 (271)
T PF13230_consen 37 GIAWYD--GGGPRVFKSPRPAWNSPNLRLLADY--------KIRSRLFLAHVRAATQGAVSLENCHPFSRELWGRRWLFA 106 (271)
T ss_dssp EEEEES--SSS-EEEEESS-CCC-HHHHHHHH---------H-EEEEEEEEE------------SS-EE----ETTEEEE
T ss_pred EEEEEe--CCeEEEEECCCCCcCCchHHHHhhC--------CccCCEEEEEecccCCCCCCcccCCCceeccCCCcEEEE
Confidence 899994 55677777653 445555544332 256788999999999999999999999753 34679999
Q ss_pred EcceecchHHHH
Q psy1919 80 HNGIVTNYKELK 91 (737)
Q Consensus 80 hNG~I~N~~~Lr 91 (737)
|||.|.++..++
T Consensus 107 HNG~i~~f~~~~ 118 (271)
T PF13230_consen 107 HNGTIPGFEDIL 118 (271)
T ss_dssp EEEEETTGGGGH
T ss_pred eCCccccccccC
Confidence 999999998776
No 93
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=98.71 E-value=1.5e-08 Score=110.71 Aligned_cols=78 Identities=24% Similarity=0.342 Sum_probs=67.2
Q ss_pred CCceEEEEccCCchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeCCCCCEEEEEcceecchHH
Q psy1919 10 DGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHNGIVTNYKE 89 (737)
Q Consensus 10 ~~~~i~~~K~~G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~~~~~~avvhNG~I~N~~~ 89 (737)
-+.+..|+|++|...+|.+.... ++.+ .+.+.++|+|+|++|+.-|+...||||. .+||||+|.++.-
T Consensus 172 ~s~~t~VYKG~~~p~~V~~~y~d----l~~~-~~~s~~~l~HsRFSTNT~p~W~~AHPfr-------~lvHNGEInT~~g 239 (371)
T COG0067 172 LSSRTIVYKGVGLPEDVAEFYLD----LDDE-RYKSAIALVHTRFSTNTFPSWPLAHPFR-------LLVHNGEINTYGG 239 (371)
T ss_pred cCCCeEEEecccCHHHHHHHHhh----ccch-hhceeEEEEEeccCCCCCCCCCccCcce-------eeeecceeccccc
Confidence 46689999999999999874322 2222 5789999999999999999999999995 4699999999999
Q ss_pred HHHHHhcCCC
Q psy1919 90 LKAFLTNKDH 99 (737)
Q Consensus 90 Lr~~L~~~G~ 99 (737)
.|+.++++|+
T Consensus 240 N~nwm~ar~~ 249 (371)
T COG0067 240 NRNWLEARGY 249 (371)
T ss_pred HHHHHHHhhc
Confidence 9999999999
No 94
>COG0121 Predicted glutamine amidotransferase [General function prediction only]
Probab=98.33 E-value=6.3e-07 Score=94.22 Aligned_cols=77 Identities=26% Similarity=0.268 Sum_probs=58.6
Q ss_pred cEEEEcCCCceEEEEccCCc-hhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeC-CCCCEEEEE
Q psy1919 3 CIALDAADGVDIAIVKKSGK-VSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSD-IDQTFCVVH 80 (737)
Q Consensus 3 gIa~~~~~~~~i~~~K~~G~-v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~-~~~~~avvh 80 (737)
||++. +++.+.++|+.=- .++ ... ..+...+++.+.|+|+|.||-|..+..|+|||+.. .+..+.++|
T Consensus 37 Gia~y--~~~~~~~yk~~~P~~~d-~~~-------~~~~~~i~S~~viaHvR~At~G~vs~~ntHPF~~~~~~~~~~FaH 106 (252)
T COG0121 37 GIAFY--EGRGPRLYKSPLPAWED-IAL-------LVLAYPIKSELVIAHVRKATQGEVSLSNTHPFTRELWGYIWLFAH 106 (252)
T ss_pred eEEEE--cCCccEEEeCCCccccc-hhh-------hhcccccCccEEEEEEeccCCCcccccCCCCccccCCccceEEEe
Confidence 89998 5557888887733 333 221 11222577889999999999998899999999765 455689999
Q ss_pred cceecchHH
Q psy1919 81 NGIVTNYKE 89 (737)
Q Consensus 81 NG~I~N~~~ 89 (737)
||.|.||+.
T Consensus 107 NG~l~~~~~ 115 (252)
T COG0121 107 NGQLDKFKL 115 (252)
T ss_pred cCcccCccc
Confidence 999999976
No 95
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=98.30 E-value=4.3e-06 Score=93.97 Aligned_cols=95 Identities=14% Similarity=0.133 Sum_probs=70.5
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHHHhc--CCcEEEe---ccccccccCC-CCCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q psy1919 477 RCRRLMMIGCGTSYHSAVATRQLLEELT--ELPVMVE---LASDFLDRNT-PVFRDDVCFFISQSGETADSLMALRYCKA 550 (737)
Q Consensus 477 ~akrI~ivG~GsS~~aA~~~~~~l~~~~--gi~v~~~---~ase~~~~~~-~l~~~dlvI~ISqSGeT~etl~al~~AKe 550 (737)
+.+.|+++|+|+|+..++.+.+.+.... +.++.+. .+.++..... ...+++++|++|.||.|.||+.+++.+++
T Consensus 57 ~~~~VV~iGIGGS~LG~~~l~~al~~~~~~~~~i~f~~n~dp~~~~~~l~~~~~~~TlviviSKSGtT~ETl~~~~~~~~ 136 (410)
T PRK03868 57 SIKNIVVIGIGGSSLGVKAIYSFLKNEKNNKKELHFLENTDPISINKTLSKINLENTLFIVISKSGTTIETISIFKYLLS 136 (410)
T ss_pred CCCEEEEEecChHHHHHHHHHHHHHhhccCCCcEEEEecCCHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999999886432 3455432 2334322222 23477899999999999999999999988
Q ss_pred cC------CeEEEEecCCCCccccccc
Q psy1919 551 RG------ALIVGVTNTVGSSISRESH 571 (737)
Q Consensus 551 ~G------a~tIaITn~~~S~La~~AD 571 (737)
.+ ++.+++|..++|+|.+.|.
T Consensus 137 ~~~~~~~~~~~~v~vTd~~s~L~~~a~ 163 (410)
T PRK03868 137 HFKLDQELKKNFLFITDPDSKLEQFAK 163 (410)
T ss_pred HhccccccccEEEEEecCCchHHHhHH
Confidence 74 5555555557889999886
No 96
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=98.23 E-value=1.7e-06 Score=86.95 Aligned_cols=87 Identities=14% Similarity=0.079 Sum_probs=59.7
Q ss_pred CccEEEEcCCCceEEEEccCCchhhHHHHHHhhh-hccccccc-C-CCcEEEeEeeccccCCCCCCCCCCeeeCCCCCEE
Q psy1919 1 MKCIALDAADGVDIAIVKKSGKVSALEDEIQTRL-KELNVEES-S-ATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFC 77 (737)
Q Consensus 1 ~~gIa~~~~~~~~i~~~K~~G~v~~l~~~~~~~~-~~~~l~~~-~-~~~~~IgHtR~at~g~~~~~nahP~~~~~~~~~a 77 (737)
|-||+...+..... ....-.+.++.+.+..|| +....... . .+++++||+|++..|. ..++||+.. .++.++
T Consensus 1 MCGI~~~~~~~~~~--~~~~~~~~~m~~~l~hRGPD~~~~~~~~~~~~~~~l~~~rL~i~~~--~~~~QP~~~-~~~~~~ 75 (181)
T cd03766 1 MCGILCSVSPSGPH--INSSLLSEELLPNLRNRGPDYLSTRQLSVTNWTLLFTSSVLSLRGD--HVTRQPLVD-QSTGNV 75 (181)
T ss_pred CCcEEEEEeCCCCc--ccchhhHHHHHHHHHhcCCCccCCEEeeccccEEEEEeeEEEecCC--CCCCCCCEe-CCCCEE
Confidence 77887753221111 001234678888899998 43333211 1 1468999999999995 358999964 456799
Q ss_pred EEEcceecchHHHHH
Q psy1919 78 VVHNGIVTNYKELKA 92 (737)
Q Consensus 78 vvhNG~I~N~~~Lr~ 92 (737)
+||||+|||+.+||+
T Consensus 76 lv~NGeIyN~~~l~~ 90 (181)
T cd03766 76 LQWNGELYNIDGVED 90 (181)
T ss_pred EEECCEEECcccccC
Confidence 999999999999887
No 97
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=98.21 E-value=1.5e-05 Score=97.04 Aligned_cols=104 Identities=19% Similarity=0.274 Sum_probs=74.8
Q ss_pred cccchhHHHc--CCCeEEEEecchhHHHHHHHHHHHHHhcCCcEEEecc---cccccc-CCCC-CCCCeEEEEcCCCCcH
Q psy1919 467 GIKDYIPEIR--RCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELA---SDFLDR-NTPV-FRDDVCFFISQSGETA 539 (737)
Q Consensus 467 ~l~~~~~~L~--~akrI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~a---se~~~~-~~~l-~~~dlvI~ISqSGeT~ 539 (737)
.++++++.++ +.++|+++|+|+|+..+..+.+.|.+..+.+...... ...... ...+ .+++++|++|.||.|.
T Consensus 442 ~i~~fa~~Ir~~~~d~VVviGIGGS~LG~~~l~~~l~~~~~~p~l~~ldn~DP~~v~~~l~~~~~e~TLvIViSKSGtT~ 521 (948)
T PRK09533 442 EYEAFAEEVRAEGFTDAVVLGMGGSSLGPEVLAETFGQRDGFPKLHVLDSTDPAQVRALEAAVDLARTLFIVSSKSGGTL 521 (948)
T ss_pred HHHHHHHHHhcCCCCEEEEEccChhHHHHHHHHHHHHhcCCCceEEEEeCCChHHHHHHHhhCCcccEEEEEEeCCCCCH
Confidence 3456666665 4899999999999999999888887554544432211 111110 0111 2678999999999999
Q ss_pred HHHHHHHHHH---------HcCCeEEEEecCCCCccccccc
Q psy1919 540 DSLMALRYCK---------ARGALIVGVTNTVGSSISRESH 571 (737)
Q Consensus 540 etl~al~~AK---------e~Ga~tIaITn~~~S~La~~AD 571 (737)
||+.+.+.++ +.|..+|+||. ++|+|.+.|+
T Consensus 522 ET~sa~~~~~~~l~~~~g~~~~~~~VaVTd-pgs~L~~~A~ 561 (948)
T PRK09533 522 EPNIFKDYFFARVKEVLGAKAGRHFVAVTD-PGSSLEKVAK 561 (948)
T ss_pred HHHHHHHHHHHHhhhhcccccCCeEEEEeC-CCChHHHHHH
Confidence 9999999776 34678999998 6999998874
No 98
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=98.17 E-value=2.8e-06 Score=79.20 Aligned_cols=79 Identities=25% Similarity=0.297 Sum_probs=68.0
Q ss_pred HcCCCeEEEEecCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCeEEEEEcCCchhHHHHHHHHHhhhc
Q psy1919 646 MYEQKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIFT 725 (737)
Q Consensus 646 l~~~~~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPialid~~t~Vi~l~~~d~~~~k~~~~l~ei~aR 725 (737)
+.+.++++++|. |.++++|+++++||+++.+.....++.+++.|+|+..+++++.+|++...+.+. .+++.++..+.+
T Consensus 2 i~~~~~i~i~G~-G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg~~~-~~~~~~~~ak~~ 79 (131)
T PF01380_consen 2 IAKAKRIYIYGS-GSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSGETR-ELIELLRFAKER 79 (131)
T ss_dssp HTTSSEEEEEES-THHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSSTTH-HHHHHHHHHHHT
T ss_pred CCCCCEEEEEEc-chHHHHHHHHHHHHHHhcCcceeccchHHHhhhhcccccccceeEeeeccccch-hhhhhhHHHHhc
Confidence 567899999999 999999999999999999999999999999999999999999999998777663 344555555554
Q ss_pred c
Q psy1919 726 I 726 (737)
Q Consensus 726 ~ 726 (737)
+
T Consensus 80 g 80 (131)
T PF01380_consen 80 G 80 (131)
T ss_dssp T
T ss_pred C
Confidence 4
No 99
>COG0166 Pgi Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.00 E-value=0.00022 Score=80.85 Aligned_cols=202 Identities=14% Similarity=0.083 Sum_probs=122.8
Q ss_pred CCeEEEEecchhHHHHHHHHHHHHHhcC--CcEEEecc---ccccccCCCCC-CCCeEEEEcCCCCcHHHHHHHHHHHHc
Q psy1919 478 CRRLMMIGCGTSYHSAVATRQLLEELTE--LPVMVELA---SDFLDRNTPVF-RDDVCFFISQSGETADSLMALRYCKAR 551 (737)
Q Consensus 478 akrI~ivG~GsS~~aA~~~~~~l~~~~g--i~v~~~~a---se~~~~~~~l~-~~dlvI~ISqSGeT~etl~al~~AKe~ 551 (737)
.+.|+.+|+|+|+..+..+...+..... ..+..... .++......++ +.++++++|.||.|.||+.+.+.+|+.
T Consensus 79 ~~~IV~IGIGGS~LG~~~~~~aL~~~~~~~~~~~Fv~nid~~~~~~~l~~i~~~~tl~iviSKSGtT~Et~~n~~~~r~~ 158 (446)
T COG0166 79 ITDIVNIGIGGSDLGPRAVTEALRPYAPNGPRVHFVSNVDPTYLAEVLKKLDPETTLFIVISKSGTTLETLTNFRLARKW 158 (446)
T ss_pred cceEEEeCCchhHHHHHHHHHHhhhhccCCCceEEecCCCchhhhHHHhccCcccEEEEEEeCCCCcHHHHHHHHHHHHH
Confidence 8899999999999999999988887643 23333322 22211112233 346899999999999999999999987
Q ss_pred C-------CeEEEEecCCCCccccccc----eEEEcCCC--CCccccchhHHHHHHHHHHHHHHHHhhhhcchHHHHHHH
Q psy1919 552 G-------ALIVGVTNTVGSSISRESH----CGIHINAG--PEIGVASTKAYTSQFISLVMFALVMCEDRISLQTRRNEI 618 (737)
Q Consensus 552 G-------a~tIaITn~~~S~La~~AD----~~L~~~ag--~E~~vasTksftsql~~L~lLal~la~~~~~~~~~~~~~ 618 (737)
. .+..++|+...+.+++.++ -++.++.+ ...+ ..+.+ -++.+.++.. ...++
T Consensus 159 ~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~f~ipd~VGGRfS------~~SaV---G~l~~a~~~~------~~~~l 223 (446)
T COG0166 159 LEKKEEAAKKHFVATSTNGGALAVLAGENGLETFEIPDWVGGRYS------VLSAV---GLLPLALGGI------DFKEL 223 (446)
T ss_pred HHhhhhhhhcEEEEEcCCchHHHHhcCCCceeEEECCCCCCCccc------hhHHH---HHHHHHHhcc------cHHHH
Confidence 7 5678888888888886663 45656532 2222 12221 1333333322 23445
Q ss_pred HHHHHHHHHHHHHH-hc-ccHHHHHHHH-HH---cCCCeEEEEecCCCCHHHHHHHHHHHHHhcccccccccccccc--c
Q psy1919 619 IKGLKVIHEQIREV-LQ-MDSEVQQLAK-EM---YEQKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELK--H 690 (737)
Q Consensus 619 ~~~l~~l~~~i~~v-l~-~~~~~~~lA~-~l---~~~~~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~--H 690 (737)
++....+.+.+... ++ ..+....++. ++ +....-.++.+ .+.+..+.++--.|-+-|.-.+......++. +
T Consensus 224 L~Ga~~~d~~~~~~~l~~N~~~l~ali~~~~~~~~G~~~~~i~~Y-~~~l~~f~~~~qQL~~ES~GK~~~~~~~~~~~~t 302 (446)
T COG0166 224 LEGAAAADEHFRTTPLEENLAVLYALIGIWYYNFKGAEIEVILPY-DPYLEYFPAWLQQLNMESNGKSVKGIGPEVNFHT 302 (446)
T ss_pred HHHHHHHHHHhccCChhhcHHHHHHHHHHHHhcccCCCceEEEec-cHHHHHHHHHHHHHHHhccCCCccCcCCccccCC
Confidence 55555555444442 22 2222333333 22 23456678888 7778888887777777775554444444433 6
Q ss_pred ccccc
Q psy1919 691 GPLAL 695 (737)
Q Consensus 691 GPial 695 (737)
||+..
T Consensus 303 ~~~~~ 307 (446)
T COG0166 303 DPISW 307 (446)
T ss_pred Cceee
Confidence 77665
No 100
>PRK14095 pgi glucose-6-phosphate isomerase; Provisional
Probab=97.83 E-value=4.7e-05 Score=87.76 Aligned_cols=95 Identities=21% Similarity=0.240 Sum_probs=61.4
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHHHhc--CCcEEEec---cccccccCCCC-CCCCeEEEEcCCCCcHHHHHHHH----
Q psy1919 477 RCRRLMMIGCGTSYHSAVATRQLLEELT--ELPVMVEL---ASDFLDRNTPV-FRDDVCFFISQSGETADSLMALR---- 546 (737)
Q Consensus 477 ~akrI~ivG~GsS~~aA~~~~~~l~~~~--gi~v~~~~---ase~~~~~~~l-~~~dlvI~ISqSGeT~etl~al~---- 546 (737)
..+.|+++|+|+|+.....+...+..+. +.++.+.. +..+......+ .+.+++|++|.||.|.||+.+++
T Consensus 150 ~~~~VV~IGIGGS~LGp~av~~AL~~~~~~~~~l~fvsNvDp~~~~e~L~~ldpe~TLfiviSKSGtT~ETl~n~~~~r~ 229 (533)
T PRK14095 150 KFTTVVQIGIGGSDLGPKALYLALKNYAKKDKRVHFISNVDPDDAAEVLSEIDLAKTLFIVVSKSGTTLETAANEEFVRD 229 (533)
T ss_pred ccceEEEEecCcchHhHHHHHHHHHhhccCCceEEEECCCCHHHHHHHHhcCCcccEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4789999999999965555544444321 22333221 11111111112 25779999999999999999844
Q ss_pred HHHHcC----CeEEEEecCCCCccccccce
Q psy1919 547 YCKARG----ALIVGVTNTVGSSISRESHC 572 (737)
Q Consensus 547 ~AKe~G----a~tIaITn~~~S~La~~AD~ 572 (737)
.+++.| ..+|+||. +++++++..++
T Consensus 230 wl~~~G~~~~~h~VaVT~-~~s~l~~~~~~ 258 (533)
T PRK14095 230 ALKKAGLDYKKHFIAVTS-EGSPMDDESGY 258 (533)
T ss_pred HHHHcCccccceEEEEEC-CchHHHhhcCc
Confidence 444455 57999998 77788887666
No 101
>cd05010 SIS_AgaS_like AgaS-like protein. AgaS contains a SIS (Sugar ISomerase) domain which is found in many phosphosugar isomerases and phosphosugar binding proteins. AgaS is a putative isomerase in Escherichia coli. It is similar to the glucosamine-6-phosphate synthases (GlmS) which catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source.
Probab=97.78 E-value=0.00031 Score=68.64 Aligned_cols=81 Identities=15% Similarity=0.167 Sum_probs=68.1
Q ss_pred EEEEecchhHHHHHHHHHHHHHhcC--CcEEEeccccccccCC-CCCCCCeEEEEcCCCCcHH--HHHHHHHHHHc--CC
Q psy1919 481 LMMIGCGTSYHSAVATRQLLEELTE--LPVMVELASDFLDRNT-PVFRDDVCFFISQSGETAD--SLMALRYCKAR--GA 553 (737)
Q Consensus 481 I~ivG~GsS~~aA~~~~~~l~~~~g--i~v~~~~ase~~~~~~-~l~~~dlvI~ISqSGeT~e--tl~al~~AKe~--Ga 553 (737)
|+++|.|.+|..|+.++.+|++++. +++..+.+.||.|.+. .++++..+|++...+++.+ ...+++..+++ |+
T Consensus 1 ~~~lGrG~~y~~A~E~ALKlkE~s~~~~~ae~~s~~Ef~HGP~alv~~~~~vi~l~~~d~~~~~~~~~~~~ei~~~~~g~ 80 (151)
T cd05010 1 VVYLGSGPLAGLAREAALKVLELTAGKVATVYDSPLGFRHGPKSLVDDDTLVVVFVSNDPYTRQYDLDLLKELRRDGIAA 80 (151)
T ss_pred CEEEecCCcHHHHHHHHHHHHHHhccchhhccccccccccCcHHHccCCceEEEEEcCCchHHHHHHHHHHHHHhccCCC
Confidence 6899999999999999999999854 6888888899988864 4567888888887888643 56899999997 89
Q ss_pred eEEEEecC
Q psy1919 554 LIVGVTNT 561 (737)
Q Consensus 554 ~tIaITn~ 561 (737)
++++|+..
T Consensus 81 ~vi~i~~~ 88 (151)
T cd05010 81 RVIAISPE 88 (151)
T ss_pred eEEEEEcC
Confidence 99999875
No 102
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=97.74 E-value=0.00028 Score=77.75 Aligned_cols=93 Identities=13% Similarity=0.046 Sum_probs=78.4
Q ss_pred ccchhHHHcCCCeEEEEecchhHHHH-HHHHHHHHHhcCCcEEEeccccccccCCC-CCCCCeEEEEcCCCCcH-HHHHH
Q psy1919 468 IKDYIPEIRRCRRLMMIGCGTSYHSA-VATRQLLEELTELPVMVELASDFLDRNTP-VFRDDVCFFISQSGETA-DSLMA 544 (737)
Q Consensus 468 l~~~~~~L~~akrI~ivG~GsS~~aA-~~~~~~l~~~~gi~v~~~~ase~~~~~~~-l~~~dlvI~ISqSGeT~-etl~a 544 (737)
.+++++.+...++++++|.|.+|.+| +.+..+|+++..+++....+.||.|.+.. ++++..+|++.-+|++. .+.++
T Consensus 198 ~~~~a~~~~~~~~~~~lG~G~~y~~A~~E~alKl~E~~~i~a~~~~~~Ef~HGP~~li~~~~~vi~l~~~~~~~~~~~~~ 277 (340)
T PRK11382 198 GRQLGELASQWPMIYTVAAGPLRPLGYKEGIVTLMEFTWTHGCVIESGEFRHGPLEIVEPGVPFLFLLGNDESRHTTERA 277 (340)
T ss_pred HHHHHHHhcCCCcEEEEeCCCCHHHHHHHHHHHHHHHhhhhcccccHHHhccChHHHhcCCceEEEEEcCcchHHHHHHH
Confidence 34556667788999999999999997 89999999998999998889999887643 56777777777788875 57789
Q ss_pred HHHHHHcCCeEEEEec
Q psy1919 545 LRYCKARGALIVGVTN 560 (737)
Q Consensus 545 l~~AKe~Ga~tIaITn 560 (737)
++.++++|++++.|+.
T Consensus 278 ~~~l~~~~~~v~~I~~ 293 (340)
T PRK11382 278 INFVKQRTDNVIVIDY 293 (340)
T ss_pred HHHHHHCCCeEEEEEC
Confidence 9999999999999975
No 103
>PRK14096 pgi glucose-6-phosphate isomerase; Provisional
Probab=97.71 E-value=0.00018 Score=83.06 Aligned_cols=94 Identities=19% Similarity=0.215 Sum_probs=67.0
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHHHhc-CCcEEEec---cccccccCCCC---CCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy1919 477 RCRRLMMIGCGTSYHSAVATRQLLEELT-ELPVMVEL---ASDFLDRNTPV---FRDDVCFFISQSGETADSLMALRYCK 549 (737)
Q Consensus 477 ~akrI~ivG~GsS~~aA~~~~~~l~~~~-gi~v~~~~---ase~~~~~~~l---~~~dlvI~ISqSGeT~etl~al~~AK 549 (737)
..+.|+++|.|+|+...+.+...|.... +.++.+.. +..+......+ .+.+++|++|.||.|.||+.+++.++
T Consensus 113 ~~~~vV~IGIGGS~LGp~~v~~AL~~~~~~~~~~f~dN~Dp~~~~~~l~~l~~~~~~TLviViSKSGtT~ET~~n~~~~~ 192 (528)
T PRK14096 113 KFTDVLWIGIGGSALGPQFVAEALQPNSDGLNIHFIDNTDPDGIDRVLAELGDRLATTLVVVISKSGGTPETRNGMLEAK 192 (528)
T ss_pred CCCeEEEECCCcchHHHHHHHHHHhhcCCCCcEEEEcCCCHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999998888776532 23443332 11221111112 25779999999999999999988655
Q ss_pred H----cC----CeEEEEecCCCCccccccc
Q psy1919 550 A----RG----ALIVGVTNTVGSSISRESH 571 (737)
Q Consensus 550 e----~G----a~tIaITn~~~S~La~~AD 571 (737)
+ +| ..+|+||. ++|+|.+.|+
T Consensus 193 ~~l~~~G~~~~~h~VAVT~-~~s~L~~~A~ 221 (528)
T PRK14096 193 AAYEAAGLDFASHAVAITM-KGSKLDQLAQ 221 (528)
T ss_pred HHHHhhcccccceEEEEEC-CCcHHhhhcc
Confidence 4 34 57999998 7889999883
No 104
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=97.66 E-value=0.00021 Score=81.14 Aligned_cols=104 Identities=16% Similarity=0.141 Sum_probs=70.5
Q ss_pred ccchhHHHcCCCeEEEEecchhHHHHHHHHHHHHHhc----------CCcEEEecc--cccccc-CCCCC-CCCeEEEEc
Q psy1919 468 IKDYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEELT----------ELPVMVELA--SDFLDR-NTPVF-RDDVCFFIS 533 (737)
Q Consensus 468 l~~~~~~L~~akrI~ivG~GsS~~aA~~~~~~l~~~~----------gi~v~~~~a--se~~~~-~~~l~-~~dlvI~IS 533 (737)
++++.+.+++.+.|+++|+|+|+..+..+...+.... +..+.+... ..+... ...++ +++++|+||
T Consensus 61 ~~~~~~~~~~~~~vVviGIGGS~LG~~al~~al~~~~~~~~~~~~~~~~~l~~~~n~dp~~~~~~l~~l~~~~Tl~iviS 140 (446)
T PRK00973 61 YEELKEWSKNFDNVVVLGIGGSALGNLALHYALNPLNWNELSKEERNGPRVFVLDNVDPEKTASILDVIDLEKTLFNVIS 140 (446)
T ss_pred HHHHHHHhhcCCEEEEEcCCchhHHHHHHHHHHhhhccccccccccCCceEEEeCCCCHHHHHHHHHhCCcccEEEEEEe
Confidence 3333333445799999999999999998887766421 112322211 111111 11233 567999999
Q ss_pred CCCCcHHHHHHHHHHHH--------cCCeEEEEecCCCCccccccc
Q psy1919 534 QSGETADSLMALRYCKA--------RGALIVGVTNTVGSSISRESH 571 (737)
Q Consensus 534 qSGeT~etl~al~~AKe--------~Ga~tIaITn~~~S~La~~AD 571 (737)
.||.|.||+.+.+.+++ .+..+|+||+..++.|.+.|+
T Consensus 141 KSGtT~ET~~~f~~~~~~l~~~g~~~~~~~vaiTd~~~g~L~~~A~ 186 (446)
T PRK00973 141 KSGNTAETLANYLIIRGILEKLGLDPKKHLVFTTDPEKGKLKKIAE 186 (446)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCccccceEEEEcCCCccchHHHHH
Confidence 99999999999998876 456799999976777877776
No 105
>KOG0571|consensus
Probab=97.66 E-value=0.00015 Score=79.71 Aligned_cols=72 Identities=22% Similarity=0.241 Sum_probs=52.6
Q ss_pred CchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeCCCCCEEEEEcceecchHHHHHHHhc
Q psy1919 21 GKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHNGIVTNYKELKAFLTN 96 (737)
Q Consensus 21 G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~~~~~~avvhNG~I~N~~~Lr~~L~~ 96 (737)
-+.-+|.+.+..||-.+.-. ......-+||-|+|+.+. ...+||.+ +.++.+++.+||+|||+.+||+.+..
T Consensus 18 ~~~l~ls~~~~hRgpd~sg~-~~~~~~~l~heRLAIvdp--~sg~QPi~-~~~~~~~~~vNGEIYNH~~Lr~~~~~ 89 (543)
T KOG0571|consen 18 PKALELSRRIRHRGPDWSGL-AQRNDNILGHERLAIVDP--TSGAQPIV-GEDGTYVVTVNGEIYNHKKLREHCKD 89 (543)
T ss_pred hhhhhHHHhhcCCCCCcchh-heeccccccccceeEecC--CcCCcccc-cCCCcEEEEECceeccHHHHHHHhhh
Confidence 34456777777777222222 122333799999999996 45899996 56778888899999999999999884
No 106
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=97.57 E-value=9.1e-05 Score=75.52 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=24.9
Q ss_pred CCCEEEEEcceecchHHHHHHHhcCCC
Q psy1919 73 DQTFCVVHNGIVTNYKELKAFLTNKDH 99 (737)
Q Consensus 73 ~~~~avvhNG~I~N~~~Lr~~L~~~G~ 99 (737)
.+++++|+||+|||+.+||++|...|+
T Consensus 49 ~~~~~iv~NGEIYN~~eLr~~L~~~g~ 75 (199)
T cd01909 49 SETGTAYLIGELYNRDELRSLLGAGEG 75 (199)
T ss_pred CCCEEEEEEEEEeCHHHHHHHHHhcCC
Confidence 447999999999999999999999898
No 107
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=97.42 E-value=0.0016 Score=71.60 Aligned_cols=93 Identities=18% Similarity=0.232 Sum_probs=79.7
Q ss_pred chhHHHcCCCeEEEEecchhHHHHHHHHHHHHHhcCCcEEEeccccccccCC-CCCCCCeEEEEcCCCCcHHH-HHHHHH
Q psy1919 470 DYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNT-PVFRDDVCFFISQSGETADS-LMALRY 547 (737)
Q Consensus 470 ~~~~~L~~akrI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~~~~~-~l~~~dlvI~ISqSGeT~et-l~al~~ 547 (737)
+++..+.+.++||++|+|..|-+|+.++.+|+++..+++.+..++||+|.+- .+.++.+||++-..++|.+. .++++.
T Consensus 193 ~~~~~~~~~~~i~~lGsG~~~g~A~e~aLkl~E~~~~~s~a~~s~E~~HGp~elv~~~~pvi~~~~~d~tr~~~~r~~~~ 272 (340)
T COG2222 193 EFAEEYADEDRIYTLGSGPLYGAAYEAALKLKEMQWIHSEAISSGEFRHGPKELVEEGTPVLLFVSEDETRELDERALKF 272 (340)
T ss_pred HHHHHhcCCCEEEEECCcccHHHHHHHHHHHHHHccccceeeeccccccCcHHHcCCCceEEEEecCCcchhHHHHHHHH
Confidence 3556778999999999999999999999999999999999999999988764 45678877777669999775 688888
Q ss_pred HHHcCCeEEEEecCC
Q psy1919 548 CKARGALIVGVTNTV 562 (737)
Q Consensus 548 AKe~Ga~tIaITn~~ 562 (737)
+++.|++++.|-...
T Consensus 273 ~~~~ga~v~vi~a~~ 287 (340)
T COG2222 273 LKNYGAKVLVIDAKD 287 (340)
T ss_pred HHhcCCeEEEEcCcc
Confidence 999999999988643
No 108
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=97.25 E-value=0.00027 Score=88.68 Aligned_cols=78 Identities=17% Similarity=0.136 Sum_probs=65.5
Q ss_pred CCceEEEEccCCchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeCCCCCEEEEEcceecchHH
Q psy1919 10 DGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHNGIVTNYKE 89 (737)
Q Consensus 10 ~~~~i~~~K~~G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~~~~~~avvhNG~I~N~~~ 89 (737)
-+.+..|+|+++...+|.+...+ +.-+ .+.+.+++.|.|++|+--|++..||||. .++|||+|--+.-
T Consensus 182 lS~rtiVYKGml~~~ql~~fY~D----L~d~-~~~s~~al~HsRFSTNT~PsW~~AqPFR-------~laHNGEINTi~g 249 (1485)
T PRK11750 182 LSNLVIIYKGLMMPADLPRFYLD----LADL-RLESAICVFHQRFSTNTLPRWPLAQPFR-------YLAHNGEINTITG 249 (1485)
T ss_pred cCCCcceeEecccHHHHHHhhhh----hCCc-ceeEEEEEEECcCCCCCCCCCCcCCCce-------eeeeccccccHHH
Confidence 35678899999999999876432 1112 4789999999999999999999999995 4899999999999
Q ss_pred HHHHHhcCCC
Q psy1919 90 LKAFLTNKDH 99 (737)
Q Consensus 90 Lr~~L~~~G~ 99 (737)
.|+++..+++
T Consensus 250 N~nwm~are~ 259 (1485)
T PRK11750 250 NRQWARARAY 259 (1485)
T ss_pred HHHHHHHHHH
Confidence 9999998876
No 109
>TIGR02815 agaS_fam putative sugar isomerase, AgaS family. Some members of this protein family are found in regions associated with N-acetyl-galactosamine and galactosamine untilization and are suggested to be isomerases.
Probab=97.12 E-value=0.005 Score=68.75 Aligned_cols=128 Identities=14% Similarity=0.039 Sum_probs=85.8
Q ss_pred cCCCeEEEEecchhHHHHHHHHHHHHHhcCCc--EEEeccccccccCC-CCCCCCeEEEEcCCCC-cHH-HHHHHHHHHH
Q psy1919 476 RRCRRLMMIGCGTSYHSAVATRQLLEELTELP--VMVELASDFLDRNT-PVFRDDVCFFISQSGE-TAD-SLMALRYCKA 550 (737)
Q Consensus 476 ~~akrI~ivG~GsS~~aA~~~~~~l~~~~gi~--v~~~~ase~~~~~~-~l~~~dlvI~ISqSGe-T~e-tl~al~~AKe 550 (737)
...++++++|.|..|..|+.++.+|+++.... +..+.+.||.|.+. .++++..+|++...++ +.. ..++++..++
T Consensus 212 ~~~~~~~~lGrG~~y~~A~E~ALKlkE~~~~~~~~~~~~~~Ef~HGP~alv~~~~~vi~l~~~d~~~~~~~~~~l~e~~~ 291 (372)
T TIGR02815 212 APWERIVYLGSGGLQGLARESALKVLELTAGKVMAFYDSSLGFRHGPKSLVDDETLVVVYVSSDPYTRQYDLDLLAELRR 291 (372)
T ss_pred cCCCeEEEEeCCCChHHHHHHHHHHHHHHHHHHheeeccccccccChHHHhcCCCeEEEEEcCchhhhhhhHHHHHHHHh
Confidence 48899999999999999999999999987533 44445679988764 4577888888877776 322 2578888888
Q ss_pred cC--CeEEEEecCCCCccccccceEEEcCCC--CCccccchhHHHHHHHHHHHHHHHHhhhhc
Q psy1919 551 RG--ALIVGVTNTVGSSISRESHCGIHINAG--PEIGVASTKAYTSQFISLVMFALVMCEDRI 609 (737)
Q Consensus 551 ~G--a~tIaITn~~~S~La~~AD~~L~~~ag--~E~~vasTksftsql~~L~lLal~la~~~~ 609 (737)
+| ++++.|++.. .... ..+..+.++.. ... .......++.+.+|+.+++..++
T Consensus 292 ~g~~~~v~~I~~~~-~~~~-~~~~~i~i~~~~~~~~----~~~~~~~vip~QllA~~~A~~~G 348 (372)
T TIGR02815 292 DNQAGRVVAISAES-SDIV-AAGDHFILPPSRHFID----VELAFPYLIFAQTLAFEQSLALG 348 (372)
T ss_pred cCCCceEEEEEcCC-cccc-cCCCEEEeCCCCCCch----HHhHHHHHHHHHHHHHHHHHHCC
Confidence 85 9999999752 1122 22344555532 111 01122234556777777776654
No 110
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=97.11 E-value=0.0014 Score=61.20 Aligned_cols=87 Identities=13% Similarity=-0.025 Sum_probs=70.3
Q ss_pred HHHHHHHHHcCCCeEEEEecCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCeEEEEEcCCchhHHHHH
Q psy1919 638 EVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMN 717 (737)
Q Consensus 638 ~~~~lA~~l~~~~~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPialid~~t~Vi~l~~~d~~~~k~~~ 717 (737)
.++++++.+.+.++++++|+ |.++.+|.+.+.+|.++ ..++..+...+..|++...++++..+|++...+.. ..+++
T Consensus 2 ~i~~~~~~i~~~~~i~i~g~-g~s~~~a~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~-~~~~~ 78 (139)
T cd05013 2 ALEKAVDLLAKARRIYIFGV-GSSGLVAEYLAYKLLRL-GKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGET-KETVE 78 (139)
T ss_pred HHHHHHHHHHhCCEEEEEEc-CchHHHHHHHHHHHHHc-CCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCC-HHHHH
Confidence 35677888888899999999 99999999999999987 55888888888999988888899888888776665 34556
Q ss_pred HHHHhhhccc
Q psy1919 718 ALLQVIFTIF 727 (737)
Q Consensus 718 ~l~ei~aR~~ 727 (737)
.++..+.++.
T Consensus 79 ~~~~a~~~g~ 88 (139)
T cd05013 79 AAEIAKERGA 88 (139)
T ss_pred HHHHHHHcCC
Confidence 6666666653
No 111
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=96.80 E-value=0.0018 Score=55.99 Aligned_cols=74 Identities=24% Similarity=0.214 Sum_probs=62.6
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHhccccccccccccccccc-cccccCCCeEEEEEcCCchhHHHHHHHHHhhhccc
Q psy1919 652 MLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGP-LALIDNSMPVIMILTRDPVYVKCMNALLQVIFTIF 727 (737)
Q Consensus 652 ~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGP-ialid~~t~Vi~l~~~d~~~~k~~~~l~ei~aR~~ 727 (737)
++++|+ |.++.+|...+.+|.++...++..+...++.|++ ...++++..+|++...+.+ ..+++.+++.+.++.
T Consensus 1 i~i~g~-G~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~t-~~~~~~~~~a~~~g~ 75 (87)
T cd04795 1 IFVIGI-GGSGAIAAYFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRT-EELLAALEIAKELGI 75 (87)
T ss_pred CEEEEc-CHHHHHHHHHHHHHhcccCCceEEeCCcHHHHHHHHhcCCCCCEEEEEECCCCC-HHHHHHHHHHHHcCC
Confidence 478999 9999999999999999988999999999999999 8888999888888776655 346667777776654
No 112
>PRK14097 pgi glucose-6-phosphate isomerase; Provisional
Probab=96.64 E-value=0.019 Score=65.64 Aligned_cols=108 Identities=23% Similarity=0.255 Sum_probs=66.9
Q ss_pred chhHHHc-CCCeEEEEecchhHHHHHHHHHHHHHh----------cCCcEEEe----ccccccccCCCC-CCCCeEEEEc
Q psy1919 470 DYIPEIR-RCRRLMMIGCGTSYHSAVATRQLLEEL----------TELPVMVE----LASDFLDRNTPV-FRDDVCFFIS 533 (737)
Q Consensus 470 ~~~~~L~-~akrI~ivG~GsS~~aA~~~~~~l~~~----------~gi~v~~~----~ase~~~~~~~l-~~~dlvI~IS 533 (737)
++++.++ +.+.|+++|.|+|+..+..+...+... .+..+... .+..+..-...+ .+++++|+||
T Consensus 64 ~~~~~~~~~~~~vV~IGIGGS~LG~~al~~al~~~~~~~~~~~~~~~~~~~f~~dn~Dp~~~~~~l~~l~~~~tl~iViS 143 (448)
T PRK14097 64 KAAEKIKSDSDVLVVIGIGGSYLGARAAIEFLNHSFYNLLPKEQRKAPQIIFAGNSISSTYLADLLEYLKDKDFSINVIS 143 (448)
T ss_pred HHHHHHhcCCCEEEEEecCcchhhHHHHHHHhhhhhcccccccccCCccEEEecCCCCHHHHHHHHhhCCCCcEEEEEEe
Confidence 3444443 458999999999999888877766431 01223211 111111111112 2577999999
Q ss_pred CCCCcHHHHHHHHHHHH-----cC---C--eEEEEecCCCCccccccc----eEEEcC
Q psy1919 534 QSGETADSLMALRYCKA-----RG---A--LIVGVTNTVGSSISRESH----CGIHIN 577 (737)
Q Consensus 534 qSGeT~etl~al~~AKe-----~G---a--~tIaITn~~~S~La~~AD----~~L~~~ 577 (737)
.||.|.||+...+.+++ .| + .+++||+.....|.+.|+ .++.++
T Consensus 144 KSGtT~ET~~~~~~~~~~l~~~~g~~~~~~~~v~iTd~~~~~L~~~a~~~g~~~f~ip 201 (448)
T PRK14097 144 KSGTTTEPAIAFRIFKELLEKKYGKEEAKKRIYATTDKAKGALKTLADAEGYETFVIP 201 (448)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcccccceEEEEeCCCchHhhccchhcCcCEEeCC
Confidence 99999999988876652 13 1 277777766656877777 355554
No 113
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=96.38 E-value=2.9e-05 Score=67.12 Aligned_cols=49 Identities=16% Similarity=0.312 Sum_probs=38.1
Q ss_pred hHHHHhccCceEEeccCcEEEEEC-CceEEEEccccCCCCCCcccEEeehhHH
Q psy1919 375 ASAVIEHTNRVIFLEDDDVAAVKD-GSLSIHRLRRSLDDPHGREITILKLEIQ 426 (737)
Q Consensus 375 ~~ail~~t~~vi~l~~~elA~~~~-s~~tI~r~ckk~g~~~~~~~~~lk~~~~ 426 (737)
+.+|++|+.++..+++.|||..++ |.+||.||||++|++ +|.+|+..+.
T Consensus 22 a~yil~~~~~~~~~si~elA~~~~vS~sti~Rf~kkLG~~---gf~efk~~l~ 71 (77)
T PF01418_consen 22 ADYILENPDEIAFMSISELAEKAGVSPSTIVRFCKKLGFS---GFKEFKIALA 71 (77)
T ss_dssp HHHHHH-HHHHCT--HHHHHHHCTS-HHHHHHHHHHCTTT---CHHHHHHHHH
T ss_pred HHHHHhCHHHHHHccHHHHHHHcCCCHHHHHHHHHHhCCC---CHHHHHHHHH
Confidence 578999999999999999999998 999999999999997 5555555443
No 114
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=95.96 E-value=0.018 Score=53.46 Aligned_cols=75 Identities=19% Similarity=0.158 Sum_probs=61.5
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCeEEEEEcCCchhHHHHHHHHHhhhcccc
Q psy1919 651 SMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIFTIFN 728 (737)
Q Consensus 651 ~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPialid~~t~Vi~l~~~d~~~~k~~~~l~ei~aR~~~ 728 (737)
+++++|. |.++.+|..++.+|..+..+++..+...++.|.+.. ++++..+|++-..+.+.+ +++.++..+.||..
T Consensus 1 ~I~i~G~-G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~I~iS~sG~t~e-~~~~~~~a~~~g~~ 75 (126)
T cd05008 1 RILIVGC-GTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPL-LDEDTLVIAISQSGETAD-TLAALRLAKEKGAK 75 (126)
T ss_pred CEEEEEc-cHHHHHHHHHHHHHHHhcCCceEEEehhHhhhcCCC-CCCCcEEEEEeCCcCCHH-HHHHHHHHHHcCCe
Confidence 3789999 999999999999999999899999998888888764 778888888877776643 77777777776643
No 115
>PLN02649 glucose-6-phosphate isomerase
Probab=95.68 E-value=0.02 Score=67.04 Aligned_cols=93 Identities=15% Similarity=0.193 Sum_probs=61.4
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHHHhc-------CCcEEEec---cccccccCCCCC-CCCeEEEEcCCCCcHHHHHHH
Q psy1919 477 RCRRLMMIGCGTSYHSAVATRQLLEELT-------ELPVMVEL---ASDFLDRNTPVF-RDDVCFFISQSGETADSLMAL 545 (737)
Q Consensus 477 ~akrI~ivG~GsS~~aA~~~~~~l~~~~-------gi~v~~~~---ase~~~~~~~l~-~~dlvI~ISqSGeT~etl~al 545 (737)
..+.|+++|.|+|+.....+...|.... +.++.+.. +..+......++ +.+++|++|.||.|.||+...
T Consensus 146 ~~~~VV~IGIGGS~LGp~~v~~AL~~~~~~~~~~~~~~~~fv~NvDp~~~~~~l~~l~p~~TL~iViSKSgtT~ET~~n~ 225 (560)
T PLN02649 146 RFTNVVSIGIGGSFLGPLFVHEALATDPEALKSAKGRKLRFLANVDPVDIARQIAQLDPETTLVVVVSKTFTTAETMLNA 225 (560)
T ss_pred ccceEEEEecCcchHHHHHHHHHHhhhccccccccCCcEEEEeCCCHHHHHHHHhhCCcccEEEEEEeCCCCCHHHHHHH
Confidence 4678999999999998888777665431 11333322 222211111222 567999999999999999888
Q ss_pred HHHHHc-----C-----CeEEEEecCCCCccccccc
Q psy1919 546 RYCKAR-----G-----ALIVGVTNTVGSSISRESH 571 (737)
Q Consensus 546 ~~AKe~-----G-----a~tIaITn~~~S~La~~AD 571 (737)
+.+++. | -..|+|| +++.+++.+.
T Consensus 226 ~~~r~~l~~~~g~~~~~~h~vavT--~~~~l~~~a~ 259 (560)
T PLN02649 226 RTVRKWLRDALGGLAVAKHMVAVS--TNLLLVNKFG 259 (560)
T ss_pred HHHHHHHHhhcccccccceEEEEC--CChHHHHHhC
Confidence 777532 2 2378899 4566877765
No 116
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=95.59 E-value=0.041 Score=57.11 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=24.6
Q ss_pred CCeeeCCCCCEEEEEcceecchHHHHHHH
Q psy1919 66 HPQRSDIDQTFCVVHNGIVTNYKELKAFL 94 (737)
Q Consensus 66 hP~~~~~~~~~avvhNG~I~N~~~Lr~~L 94 (737)
||=....++++.+++||+|||+.+||++|
T Consensus 63 ~~rl~~~~~~~~~vfnGeIyN~~eLr~~l 91 (224)
T cd01910 63 HPRLFAVKDDIFCLFQGHLDNLGSLKQQY 91 (224)
T ss_pred cCcEECCCCCEEEEEEeEEcCHHHHHHHh
Confidence 56445567789999999999999999987
No 117
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=95.42 E-value=0.032 Score=52.08 Aligned_cols=75 Identities=13% Similarity=0.018 Sum_probs=61.9
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCeEEEEEcCCchhHHHHHHHHHhhhccc
Q psy1919 651 SMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIFTIF 727 (737)
Q Consensus 651 ~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPialid~~t~Vi~l~~~d~~~~k~~~~l~ei~aR~~ 727 (737)
+++++|. |.++.+|..+..++.++..+++..+...++.|.+...++++..+|++...+++ ..+++.++..+.+|.
T Consensus 1 ~I~i~G~-G~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~I~iS~SG~t-~~~~~~~~~a~~~g~ 75 (120)
T cd05710 1 NVFFVGC-GGSLADMYPAKYFLKKESKLPVFVYNAAEFLHTGPKRLTEKSVVILASHSGNT-KETVAAAKFAKEKGA 75 (120)
T ss_pred CEEEEEe-cHHHHHHhHHHHHHHHhcCCceEEEcHHHHhhcCcccCCCCcEEEEEeCCCCC-hHHHHHHHHHHHcCC
Confidence 4789999 99999999999999999899999999999999888888888888888766665 346666666666653
No 118
>PF10432 bact-PGI_C: Bacterial phospho-glucose isomerase C-terminal region; InterPro: IPR019490 Phosphoglucose isomerase (PGI) catalyses the interconversion of phosphoglucose and phosphofructose, and is a component of many sugar metabolic pathways. In some archaea and bacteria PGI activity occurs via a bifunctional enzyme that also exhibits phosphomannose isomerase (PMI) activity. Though not closely related to eukaryotic PGIs, the bifunctional enzyme is similar enough that the sequence includes the cluster of threonines and serines that forms the sugar phosphate-binding site in conventional PGI. This entry represents the C-terminal half of the bifunctional PGI/PMI enzyme, which contains many of the active catalytic site residues. The enzyme is thought to use the same catalytic mechanisms for both glucose ring-opening and isomerisation for the interconversion of glucose 6-phosphate to fructose 6-phosphate [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity; PDB: 1TZB_A 1X9H_A 1TZC_B 1X9I_A 1WIW_A.
Probab=95.41 E-value=0.038 Score=54.29 Aligned_cols=85 Identities=11% Similarity=0.108 Sum_probs=62.7
Q ss_pred cHHHHHHHHHHcCCCeEEEEecCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCC------CeEEEEEcCC
Q psy1919 636 DSEVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNS------MPVIMILTRD 709 (737)
Q Consensus 636 ~~~~~~lA~~l~~~~~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPialid~~------t~Vi~l~~~d 709 (737)
.+.++++|.++.+ ...++.|. +...++|+.++..|.|.++.+|..-...|+.|..+...+.. ..+|++..++
T Consensus 5 ~n~Ak~LA~~L~~-~~Pvi~~~-~~~~~vA~R~k~qlnEnAK~~A~~~~lPE~~Hn~i~g~~~~~~~~~~~~~v~l~d~~ 82 (155)
T PF10432_consen 5 VNPAKRLALELAG-RIPVIYGS-PLYAAVARRWKQQLNENAKYPAFAAVLPEANHNEIVGWEGPEPPGGRLRVVLLRDPE 82 (155)
T ss_dssp HHHHHHHHHHHTT-SEEEEEEC-GCGCHHHHHHHHHHHHTT----EEEEETCHHHCHHHCTSS-GGGGTTEEEEEEC-TC
T ss_pred cCHHHHHHHHHcC-CCcEEEEC-ccchHHHHHHHHHHHHHhCCccchhcchhhhhhhhhhccCCcccccceEEEEEEcCC
Confidence 4678999999987 56677788 89999999999999999999999999999999999888654 4455555444
Q ss_pred ch-h-HHHHHHHHHh
Q psy1919 710 PV-Y-VKCMNALLQV 722 (737)
Q Consensus 710 ~~-~-~k~~~~l~ei 722 (737)
.. + .+.++.++++
T Consensus 83 ~~~~~~~r~~~~~e~ 97 (155)
T PF10432_consen 83 DHPRVQRRVEITREI 97 (155)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred ccccchhhhHHHHHH
Confidence 32 2 3456777776
No 119
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=95.15 E-value=0.2 Score=54.51 Aligned_cols=90 Identities=13% Similarity=0.070 Sum_probs=69.6
Q ss_pred HHHHHHHHHHcCCC-eEEEEecCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCeEEEEEcCCchhHHH
Q psy1919 637 SEVQQLAKEMYEQK-SMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKC 715 (737)
Q Consensus 637 ~~~~~lA~~l~~~~-~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPialid~~t~Vi~l~~~d~~~~k~ 715 (737)
+...+.++.+.+.. ++++.|. |.++.+|.+.+.||.- ...++..+...++.|.....++++..+|++...+++ ..+
T Consensus 29 ~~~~~~~~~l~~~~~~I~i~G~-G~S~~~A~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t-~~~ 105 (321)
T PRK11543 29 DDFVRAANIILHCEGKVVVSGI-GKSGHIGKKIAATLAS-TGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGA-KEL 105 (321)
T ss_pred HHHHHHHHHHHhcCCcEEEEec-ChhHHHHHHHHHHHHc-CCCceeecChHHHhhCCcCccCCCCEEEEEeCCCCc-HHH
Confidence 34667777776664 8999999 9999999999999986 466777776677777777888899888888777766 447
Q ss_pred HHHHHHhhhccccc
Q psy1919 716 MNALLQVIFTIFNL 729 (737)
Q Consensus 716 ~~~l~ei~aR~~~~ 729 (737)
++.++..+.+|..+
T Consensus 106 ~~~~~~ak~~g~~v 119 (321)
T PRK11543 106 DLIIPRLEDKSIAL 119 (321)
T ss_pred HHHHHHHHHcCCeE
Confidence 77777777776443
No 120
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=94.73 E-value=0.25 Score=49.13 Aligned_cols=85 Identities=15% Similarity=0.122 Sum_probs=59.5
Q ss_pred cHHHHHHHHHHcCCCeEEEEecCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCeEEEEEcCCchhHHH
Q psy1919 636 DSEVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKC 715 (737)
Q Consensus 636 ~~~~~~lA~~l~~~~~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPialid~~t~Vi~l~~~d~~~~k~ 715 (737)
.+.++++++.+.++++++++|. |.++.+|...+.||.-+ .+++..+. +.. ...++++..+|++--.+.+ ..+
T Consensus 20 ~~~l~~~~~~i~~a~~I~i~G~-G~S~~~A~~~~~~l~~~-g~~~~~~~--~~~---~~~~~~~D~vI~iS~sG~t-~~~ 91 (179)
T cd05005 20 EEELDKLISAILNAKRIFVYGA-GRSGLVAKAFAMRLMHL-GLNVYVVG--ETT---TPAIGPGDLLIAISGSGET-SSV 91 (179)
T ss_pred HHHHHHHHHHHHhCCeEEEEec-ChhHHHHHHHHHHHHhC-CCeEEEeC--CCC---CCCCCCCCEEEEEcCCCCc-HHH
Confidence 3567888999999999999999 99999999999998755 44444432 211 2356777777777655554 345
Q ss_pred HHHHHHhhhcccc
Q psy1919 716 MNALLQVIFTIFN 728 (737)
Q Consensus 716 ~~~l~ei~aR~~~ 728 (737)
++.++..+.+|..
T Consensus 92 i~~~~~ak~~g~~ 104 (179)
T cd05005 92 VNAAEKAKKAGAK 104 (179)
T ss_pred HHHHHHHHHCCCe
Confidence 5666666665533
No 121
>PF00342 PGI: Phosphoglucose isomerase The structure is C alpha atoms only with no sequence assignment.; InterPro: IPR001672 Phosphoglucose isomerase (5.3.1.9 from EC) (PGI) [, ] is a dimeric enzyme that catalyses the reversible isomerization of glucose-6-phosphate and fructose-6-phosphate. PGI is involved in different pathways: in most higher organisms it is involved in glycolysis; in mammals it is involved in gluconeogenesis; in plants in carbohydrate biosynthesis; in some bacteria it provides a gateway for fructose into the Entner-Doudouroff pathway. The multifunctional protein, PGI, is also known as neuroleukin (a neurotrophic factor that mediates the differentiation of neurons), autocrine motility factor (a tumour-secreted cytokine that regulates cell motility), differentiation and maturation mediator and myofibril-bound serine proteinase inhibitor, and has different roles inside and outside the cell. In the cytoplasm, it catalyses the second step in glycolysis, while outside the cell it serves as a nerve growth factor and cytokine []. PGI from Bacillus stearothermophilus has an open twisted alpha/beta structural motif consisting of two globular domains and two protruding parts. It has been suggested that the top part of the large domain together with one of the protruding loops might participate in inducing the neurotrophic activity []. The structure of rabbit muscle phosphoglucose isomerase complexed with various inhibitors shows that the enzyme is a dimer with two alpha/beta-sandwich domains in each subunit. The location of the bound D-gluconate 6-phosphate inhibitor leads to the identification of residues involved in substrate specificity. In addition, the positions of amino acid residues that are substituted in the genetic disease nonspherocytic hemolytic anemia suggest how these substitutions can result in altered catalysis or protein stability [, ].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis; PDB: 1ZZG_B 1JIQ_A 1IRI_B 1IAT_A 1JLH_C 1NUH_A 1KOJ_A 1HOX_A 1G98_B 1DQR_A ....
Probab=94.71 E-value=0.091 Score=60.80 Aligned_cols=101 Identities=18% Similarity=0.163 Sum_probs=63.3
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHHHhcCC--cEEEec---cccccccCCCCC-CCCeEEEEcCCCCcHHHHHHHHHHHH
Q psy1919 477 RCRRLMMIGCGTSYHSAVATRQLLEELTEL--PVMVEL---ASDFLDRNTPVF-RDDVCFFISQSGETADSLMALRYCKA 550 (737)
Q Consensus 477 ~akrI~ivG~GsS~~aA~~~~~~l~~~~gi--~v~~~~---ase~~~~~~~l~-~~dlvI~ISqSGeT~etl~al~~AKe 550 (737)
..+.|+++|.|+|+.....+...|...... .+.+.. +.++......++ +.+++|+||.||.|.||+..++.+++
T Consensus 95 ~~~~vV~IGIGGS~LGp~~~~~al~~~~~~~~~~~f~~n~Dp~~l~~~l~~ld~~~Tl~iViSKSgtT~ET~~n~~~~~~ 174 (486)
T PF00342_consen 95 PITDVVVIGIGGSSLGPRALYEALKPYFSNPPRLHFLDNVDPADLARLLERLDPETTLFIVISKSGTTIETLANFRIARE 174 (486)
T ss_dssp B-SEEEEE--GGGTHHHHHHHHHTGGGTTSSCEEEEESSSSHHHHHHHHTTSTGGGEEEEEEESSST-HHHHHHHHHHHH
T ss_pred ceeEEEEEecchhhHHHHHHHHHhhhhcccceEEEEeccCChHHHHHHHhcCCCccEEEEEecCCCCCHHHHHHHHHHHH
Confidence 357899999999999999988888775432 333332 222221112333 45799999999999999998888765
Q ss_pred ----c-------CCeEEEEecCCCCcccccc--ceEEEcC
Q psy1919 551 ----R-------GALIVGVTNTVGSSISRES--HCGIHIN 577 (737)
Q Consensus 551 ----~-------Ga~tIaITn~~~S~La~~A--D~~L~~~ 577 (737)
+ +-..++||.+....+...+ +.++.++
T Consensus 175 ~l~~~~~~~~~~~~h~vavT~~~~~~~~~~~~~~~~f~~~ 214 (486)
T PF00342_consen 175 WLEKKGGDKEEAAKHFVAVTDNGSGALKFGIDEENIFPIP 214 (486)
T ss_dssp HHHHHHHSGGGGGGTEEEEESSHHHHHHHTHHGGGEEE--
T ss_pred HHHhhcCccccccceEEEeCCCchHHHHHHHHHhcceecc
Confidence 1 2459999987655443333 3556554
No 122
>PRK00179 pgi glucose-6-phosphate isomerase; Reviewed
Probab=94.59 E-value=0.073 Score=62.26 Aligned_cols=92 Identities=15% Similarity=0.178 Sum_probs=58.0
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHHHhc--CCcEEEec---cccccccCCCC-CCCCeEEEEcCCCCcHHHHHHHHHHHH
Q psy1919 477 RCRRLMMIGCGTSYHSAVATRQLLEELT--ELPVMVEL---ASDFLDRNTPV-FRDDVCFFISQSGETADSLMALRYCKA 550 (737)
Q Consensus 477 ~akrI~ivG~GsS~~aA~~~~~~l~~~~--gi~v~~~~---ase~~~~~~~l-~~~dlvI~ISqSGeT~etl~al~~AKe 550 (737)
..+.|+++|.|+|+.....+...|.... +.++.+.. +..+......+ .+.+++|++|-||.|.||+..++.+++
T Consensus 144 ~~~~vV~IGIGGS~LGp~~~~~al~~~~~~~~~l~fl~nvDp~~~~~~l~~l~~~~TL~iViSKSgtT~ET~~n~~~~~~ 223 (548)
T PRK00179 144 AITDVVNIGIGGSDLGPVMVTEALRPYADPGLRVHFVSNVDGAHLAETLKKLDPETTLFIVASKTFTTQETLTNAHSARD 223 (548)
T ss_pred ccCeEEEECCCcchHHHHHHHHHhhhhccCCCceEEEeCCCHHHHHHHHhcCCcccEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4689999999999999888887775431 23343322 11221111122 256799999999999999966665542
Q ss_pred ----cC-------CeEEEEecCCCCccccc
Q psy1919 551 ----RG-------ALIVGVTNTVGSSISRE 569 (737)
Q Consensus 551 ----~G-------a~tIaITn~~~S~La~~ 569 (737)
++ -..|+||.+ .+.+++.
T Consensus 224 ~l~~~~~~~~~~~~h~vaVT~~-~~~~~~~ 252 (548)
T PRK00179 224 WFLAAGGDEAAVAKHFVAVSTN-AEAVAEF 252 (548)
T ss_pred HHHHhcCccccccceEEEEcCC-cHHHHHc
Confidence 21 237788875 3344443
No 123
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=94.20 E-value=0.39 Score=52.43 Aligned_cols=87 Identities=17% Similarity=0.127 Sum_probs=62.9
Q ss_pred HHHHHHHHHcCC-CeEEEEecCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCeEEEEEcCCchhHHHH
Q psy1919 638 EVQQLAKEMYEQ-KSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCM 716 (737)
Q Consensus 638 ~~~~lA~~l~~~-~~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPialid~~t~Vi~l~~~d~~~~k~~ 716 (737)
.++++++.+.++ ++++++|. |.++.+|.+++.||.. ...++..+...++.|-....++++..+|++-..+++ ..++
T Consensus 35 ~l~~~~~~l~~a~~~I~i~G~-G~S~~~a~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t-~~~~ 111 (326)
T PRK10892 35 DFTLACEKMFWCKGKVVVMGM-GKSGHIGRKMAATFAS-TGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGES-SEIL 111 (326)
T ss_pred HHHHHHHHHHhcCCeEEEEeC-cHhHHHHHHHHHHHhc-CCceeEEeChHHhhccccccCCCCCEEEEEeCCCCC-HHHH
Confidence 467778887676 69999999 9999999999999986 566666555556666555667777777777666655 3456
Q ss_pred HHHHHhhhccc
Q psy1919 717 NALLQVIFTIF 727 (737)
Q Consensus 717 ~~l~ei~aR~~ 727 (737)
+.++..+.+|.
T Consensus 112 ~~~~~ak~~g~ 122 (326)
T PRK10892 112 ALIPVLKRLHV 122 (326)
T ss_pred HHHHHHHHCCC
Confidence 66666665553
No 124
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=94.00 E-value=0.33 Score=52.19 Aligned_cols=90 Identities=12% Similarity=0.053 Sum_probs=66.5
Q ss_pred cHHHHHHHHHHcCCCeEEEEecCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCeEEEEEcCCchhHHH
Q psy1919 636 DSEVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKC 715 (737)
Q Consensus 636 ~~~~~~lA~~l~~~~~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPialid~~t~Vi~l~~~d~~~~k~ 715 (737)
.+.+.+.++.+.++++++|+|. |.+.++|.+.+.||..+ .+++..++-..+.-.-...+.++..+|+|.-.+.+ ..+
T Consensus 117 ~~~l~~av~~L~~A~rI~~~G~-g~S~~vA~~~~~~l~~i-g~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sG~t-~e~ 193 (281)
T COG1737 117 EEALERAVELLAKARRIYFFGL-GSSGLVASDLAYKLMRI-GLNVVALSDTHGQLMQLALLTPGDVVIAISFSGYT-REI 193 (281)
T ss_pred HHHHHHHHHHHHcCCeEEEEEe-chhHHHHHHHHHHHHHc-CCceeEecchHHHHHHHHhCCCCCEEEEEeCCCCc-HHH
Confidence 4567888999999999999998 99999999999999988 44555444433322345567888888888766665 346
Q ss_pred HHHHHHhhhcccc
Q psy1919 716 MNALLQVIFTIFN 728 (737)
Q Consensus 716 ~~~l~ei~aR~~~ 728 (737)
+..++..+.+|..
T Consensus 194 i~~a~~ak~~ga~ 206 (281)
T COG1737 194 VEAAELAKERGAK 206 (281)
T ss_pred HHHHHHHHHCCCc
Confidence 6667776766643
No 125
>PTZ00430 glucose-6-phosphate isomerase; Provisional
Probab=93.89 E-value=0.081 Score=61.88 Aligned_cols=86 Identities=14% Similarity=0.198 Sum_probs=55.3
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHHHhc-------CCcEEEec---cccccccCCCCC-CCCeEEEEcCCCCcHHHHHHH
Q psy1919 477 RCRRLMMIGCGTSYHSAVATRQLLEELT-------ELPVMVEL---ASDFLDRNTPVF-RDDVCFFISQSGETADSLMAL 545 (737)
Q Consensus 477 ~akrI~ivG~GsS~~aA~~~~~~l~~~~-------gi~v~~~~---ase~~~~~~~l~-~~dlvI~ISqSGeT~etl~al 545 (737)
..+.|+++|.|+|+.....+...|.... +.++.+.. +..+......++ +.+++|++|-||.|.||+..+
T Consensus 141 ~~~~VV~IGIGGS~LGp~~v~~AL~~~~~~~~~~~~~~~~Fv~NvDp~~~~~~l~~ldp~~TLfiViSKSgtT~ETl~n~ 220 (552)
T PTZ00430 141 KLKNVICIGIGGSYLGTEFVYEALRTYGEAREASKGRKLRFLANVDPIDVRRATEGLDPEETLVVIISKTFTTAETMLNA 220 (552)
T ss_pred eeceEEEEcCCccchHHHHHHHHHhhcccccccccCCcEEEEeCCCHHHHHHHHhhCCcccEEEEEEeCCCCCHHHHHHH
Confidence 4678999999999998888777665421 13344322 222211111222 567999999999999999666
Q ss_pred HHHHHc-----C------CeEEEEecCC
Q psy1919 546 RYCKAR-----G------ALIVGVTNTV 562 (737)
Q Consensus 546 ~~AKe~-----G------a~tIaITn~~ 562 (737)
+.+++. | -..|+||.+.
T Consensus 221 ~~~r~wl~~~~~~~~~~~~h~vavT~~~ 248 (552)
T PTZ00430 221 KTVRQWLLDNIKSKEALSKHLCAVSTNL 248 (552)
T ss_pred HHHHHHHHHhccccccccCeEEEEcCch
Confidence 665431 1 2378999754
No 126
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=93.40 E-value=0.64 Score=46.15 Aligned_cols=85 Identities=15% Similarity=0.128 Sum_probs=59.8
Q ss_pred cHHHHHHHHHHcCCCeEEEEecCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCeEEEEEcCCchhHHH
Q psy1919 636 DSEVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKC 715 (737)
Q Consensus 636 ~~~~~~lA~~l~~~~~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPialid~~t~Vi~l~~~d~~~~k~ 715 (737)
.+.++++++.+.+.++++++|. |.++.+|.+.+.||..+ .+.+..+ .+. | ...++++..+|++--.+.+ ..+
T Consensus 17 ~~~~~~~~~~l~~a~~I~i~G~-G~S~~~A~~~~~~l~~~-g~~~~~~--~~~-~--~~~~~~~Dv~I~iS~sG~t-~~~ 88 (179)
T TIGR03127 17 EEELDKLADKIIKAKRIFVAGA-GRSGLVGKAFAMRLMHL-GFNVYVV--GET-T--TPSIKKGDLLIAISGSGET-ESL 88 (179)
T ss_pred HHHHHHHHHHHHhCCEEEEEec-CHHHHHHHHHHHHHHhC-CCeEEEe--CCc-c--cCCCCCCCEEEEEeCCCCc-HHH
Confidence 3567788888888999999999 99999999999999765 3333332 222 1 2456777777777655554 346
Q ss_pred HHHHHHhhhcccc
Q psy1919 716 MNALLQVIFTIFN 728 (737)
Q Consensus 716 ~~~l~ei~aR~~~ 728 (737)
++.++..+.+|..
T Consensus 89 i~~~~~ak~~g~~ 101 (179)
T TIGR03127 89 VTVAKKAKEIGAT 101 (179)
T ss_pred HHHHHHHHHCCCe
Confidence 6666666666643
No 127
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=92.77 E-value=0.42 Score=44.40 Aligned_cols=74 Identities=18% Similarity=0.088 Sum_probs=55.4
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCeEEEEEcCCchhHHHHHHHHHhhhccc
Q psy1919 651 SMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIFTIF 727 (737)
Q Consensus 651 ~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPialid~~t~Vi~l~~~d~~~~k~~~~l~ei~aR~~ 727 (737)
+++++|. |.++.+|.+.+.||.- ...++..+...++..-....++++..+|++--.+.+ ..+++.++..+.|+.
T Consensus 2 ~I~i~G~-G~S~~~a~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t-~~~~~~~~~a~~~g~ 75 (128)
T cd05014 2 KVVVTGV-GKSGHIARKIAATLSS-TGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGET-DELLNLLPHLKRRGA 75 (128)
T ss_pred eEEEEeC-cHhHHHHHHHHHHhhc-CCCceEEcccchhhccccCcCCCCCEEEEEeCCCCC-HHHHHHHHHHHHCCC
Confidence 5899999 9999999999999854 577777777666666566677888888888655554 446666666666653
No 128
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=92.53 E-value=0.63 Score=49.95 Aligned_cols=88 Identities=14% Similarity=0.101 Sum_probs=63.6
Q ss_pred HHHHHHHHHHcCCCeEEEEecCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCeEEEEEcCCchhHHHH
Q psy1919 637 SEVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCM 716 (737)
Q Consensus 637 ~~~~~lA~~l~~~~~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPialid~~t~Vi~l~~~d~~~~k~~ 716 (737)
+.+.++++.+.+++++++.|. |.++.+|...+.+|..+ .+++..+.-.++.......++++..+|++.-.+.+. .++
T Consensus 128 ~~l~~~~~~i~~A~~I~i~G~-G~S~~~A~~l~~~l~~~-g~~~~~~~d~~~~~~~~~~~~~~Dl~I~iS~sG~t~-~~~ 204 (292)
T PRK11337 128 DEFHRAARFFYQARQRDLYGA-GGSAAIARDVQHKFLRI-GVRCQAYDDAHIMLMSAALLQEGDVVLVVSHSGRTS-DVI 204 (292)
T ss_pred HHHHHHHHHHHcCCeEEEEEe-cHHHHHHHHHHHHHhhC-CCeEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCCCH-HHH
Confidence 567788999999999999999 99999999999999865 556655544333333445678888888877666553 355
Q ss_pred HHHHHhhhccc
Q psy1919 717 NALLQVIFTIF 727 (737)
Q Consensus 717 ~~l~ei~aR~~ 727 (737)
..++..+.+|.
T Consensus 205 ~~~~~ak~~g~ 215 (292)
T PRK11337 205 EAVELAKKNGA 215 (292)
T ss_pred HHHHHHHHCCC
Confidence 66666666553
No 129
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=92.48 E-value=0.67 Score=49.32 Aligned_cols=88 Identities=9% Similarity=-0.020 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcCCCeEEEEecCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCeEEEEEcCCchhHHHH
Q psy1919 637 SEVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCM 716 (737)
Q Consensus 637 ~~~~~lA~~l~~~~~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPialid~~t~Vi~l~~~d~~~~k~~ 716 (737)
+.+.++++.+.++++++++|. |.++.+|.+.+.+|... .+++..+.-..+..-....++++..+|++.-.+.+ ..++
T Consensus 116 ~~i~~~~~~i~~a~~I~i~G~-G~S~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~D~vI~iS~sG~t-~~~~ 192 (284)
T PRK11302 116 SAINRAVDLLTQAKKISFFGL-GASAAVAHDAQNKFFRF-NVPVVYFDDIVMQRMSCMNSSDGDVVVLISHTGRT-KSLV 192 (284)
T ss_pred HHHHHHHHHHHcCCeEEEEEc-chHHHHHHHHHHHHHhc-CCceEecCCHHHHHHHHHhCCCCCEEEEEeCCCCC-HHHH
Confidence 457788888889999999999 99999999999888763 56655543211111122345777777777666655 3355
Q ss_pred HHHHHhhhccc
Q psy1919 717 NALLQVIFTIF 727 (737)
Q Consensus 717 ~~l~ei~aR~~ 727 (737)
..++..+.+|.
T Consensus 193 ~~~~~ak~~g~ 203 (284)
T PRK11302 193 ELAQLARENGA 203 (284)
T ss_pred HHHHHHHHcCC
Confidence 66666555553
No 130
>cd05637 SIS_PGI_PMI_2 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the second SIS domain.
Probab=92.47 E-value=0.57 Score=44.82 Aligned_cols=59 Identities=12% Similarity=0.033 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCCeEEEEecCCCCHHHHHHHHHHHHHhccccccccccccccccccccccC
Q psy1919 638 EVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDN 698 (737)
Q Consensus 638 ~~~~lA~~l~~~~~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPialid~ 698 (737)
.++++|.++.+. .-++.|. +...++|+.++-.|.|+++++|..-...|..|+-+...+.
T Consensus 2 pAk~LA~~l~g~-~Pvi~g~-~~~~~~A~R~k~ql~enAK~~A~~~~lPE~~hn~i~~~~~ 60 (132)
T cd05637 2 PAKELALELAGR-IPIIYGS-TLYEPAAYRFKNQLNENAKYPAFYEELPEANHNEIVGWES 60 (132)
T ss_pred HHHHHHHHhcCC-CCEEEec-cchHHHHHHHHHHHHHHhCCCcccccCchhcccccccccC
Confidence 467889888764 4566788 7888899999999999999999999999999999988764
No 131
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=92.40 E-value=1.9 Score=51.21 Aligned_cols=56 Identities=25% Similarity=0.363 Sum_probs=38.7
Q ss_pred CCeEEEEcCC-CCc-HHHHHHHHHHHHcCCeEEEEecCCC----------------CccccccceEEEcCCCCC
Q psy1919 526 DDVCFFISQS-GET-ADSLMALRYCKARGALIVGVTNTVG----------------SSISRESHCGIHINAGPE 581 (737)
Q Consensus 526 ~dlvI~ISqS-GeT-~etl~al~~AKe~Ga~tIaITn~~~----------------S~La~~AD~~L~~~ag~E 581 (737)
-|++|++.+. +++ +.+...++.||++|+++|.|-.... +..++.||..|.+..|.+
T Consensus 164 ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~~gl~~f~~p~~~~~~lt~~a~~Ad~~l~irPGtD 237 (574)
T cd02767 164 TDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLREPGLERFANPQNPESMLTGGTKIADEYFQVRIGGD 237 (574)
T ss_pred CCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCccccccccccccccccccccchhhhCeeeCCCCCcH
Confidence 4666666544 544 4567888899999999999976543 134677888887765443
No 132
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=92.13 E-value=3.2 Score=50.76 Aligned_cols=56 Identities=23% Similarity=0.268 Sum_probs=37.9
Q ss_pred CCeEEEEcCC-CCc-HHHHHHHHHHHHcCCeEEEEecCCCC-----------------ccccccceEEEcCCCCC
Q psy1919 526 DDVCFFISQS-GET-ADSLMALRYCKARGALIVGVTNTVGS-----------------SISRESHCGIHINAGPE 581 (737)
Q Consensus 526 ~dlvI~ISqS-GeT-~etl~al~~AKe~Ga~tIaITn~~~S-----------------~La~~AD~~L~~~ag~E 581 (737)
-|++|++.+. +++ +-....++.|+++|+++|.|--...- .-++.||..|.+..|.+
T Consensus 199 ad~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~~~~l~rf~~p~~~~~~~t~~~a~~Ad~~l~irPGtD 273 (743)
T TIGR01701 199 TDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLRERGLERFWIPQIPESMLTGGGTQISSEYYQVRIGGD 273 (743)
T ss_pred CCEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCCcccccccccccccchhccccchHhhCeeecCCCCcH
Confidence 4667766554 554 44677888899999999999653321 11678898887765544
No 133
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=90.81 E-value=2.3 Score=42.17 Aligned_cols=89 Identities=18% Similarity=0.088 Sum_probs=57.1
Q ss_pred HHHHHHHHHcCCCeEEEEecCCCCHHHHHHHHHHHHHhc-----cccccccc--cccc-------ccccc------cccc
Q psy1919 638 EVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIKELT-----YMHSEGIM--AGEL-------KHGPL------ALID 697 (737)
Q Consensus 638 ~~~~lA~~l~~~~~~~~lG~GG~~y~~A~EgALKlkE~s-----~i~Ae~~~--a~Ef-------~HGPi------alid 697 (737)
.++.+++.+.+.++++++|. |.++.+|.+.+.+|.-.. .+++..+. ..++ -+..+ ..++
T Consensus 22 a~~~i~~~i~~~~~I~i~G~-G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (177)
T cd05006 22 AAQLLAEALLNGGKILICGN-GGSAADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIANDYGYEEVFSRQVEALGQ 100 (177)
T ss_pred HHHHHHHHHHCCCEEEEEeC-cHHHHHHHHHHHHHhchhccCCCCCceEeccCCHHHHHHHhccCCHHHHHHHHHHHhCC
Confidence 34555666667889999999 999999999998886322 44554443 1111 11111 2467
Q ss_pred CCCeEEEEEcCCchhHHHHHHHHHhhhcccc
Q psy1919 698 NSMPVIMILTRDPVYVKCMNALLQVIFTIFN 728 (737)
Q Consensus 698 ~~t~Vi~l~~~d~~~~k~~~~l~ei~aR~~~ 728 (737)
++..+|++...+.+ ..+++.++..+.||..
T Consensus 101 ~~Dv~I~iS~SG~t-~~~i~~~~~ak~~Ga~ 130 (177)
T cd05006 101 PGDVLIGISTSGNS-PNVLKALEAAKERGMK 130 (177)
T ss_pred CCCEEEEEeCCCCC-HHHHHHHHHHHHCCCE
Confidence 77778888766665 3466777777766643
No 134
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=90.65 E-value=1.4 Score=46.94 Aligned_cols=85 Identities=11% Similarity=0.049 Sum_probs=57.7
Q ss_pred HHHHHHHHHHcCCCeEEEEecCCCCHHHHHHHHHHHHHhcccccccccccccccccc---ccccCCCeEEEEEcCCchhH
Q psy1919 637 SEVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPL---ALIDNSMPVIMILTRDPVYV 713 (737)
Q Consensus 637 ~~~~~lA~~l~~~~~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPi---alid~~t~Vi~l~~~d~~~~ 713 (737)
+.+.++++.+.++++++++|. |.++++|...+.+|.-+ ..++..+ .+ .|... ..++++..+|+|--.+.+ .
T Consensus 116 ~~l~~~~~~i~~a~~I~i~G~-G~s~~~A~~~~~~l~~~-g~~~~~~--~d-~~~~~~~~~~~~~~Dv~I~iS~sg~~-~ 189 (278)
T PRK11557 116 EKLHECVTMLRSARRIILTGI-GASGLVAQNFAWKLMKI-GINAVAE--RD-MHALLATVQALSPDDLLLAISYSGER-R 189 (278)
T ss_pred HHHHHHHHHHhcCCeEEEEec-ChhHHHHHHHHHHHhhC-CCeEEEc--CC-hHHHHHHHHhCCCCCEEEEEcCCCCC-H
Confidence 567788888999999999999 99999999999999865 3444332 22 23322 245677777776555544 4
Q ss_pred HHHHHHHHhhhccc
Q psy1919 714 KCMNALLQVIFTIF 727 (737)
Q Consensus 714 k~~~~l~ei~aR~~ 727 (737)
.++..++..+.+|.
T Consensus 190 ~~~~~~~~ak~~ga 203 (278)
T PRK11557 190 ELNLAADEALRVGA 203 (278)
T ss_pred HHHHHHHHHHHcCC
Confidence 45555555555553
No 135
>PRK13937 phosphoheptose isomerase; Provisional
Probab=90.61 E-value=3 Score=42.07 Aligned_cols=90 Identities=17% Similarity=0.086 Sum_probs=55.3
Q ss_pred HHHHHHHHHHcCCCeEEEEecCCCCHHHHHHHHHHHH-----Hhcccccccccc---------ccc-cccc----c-ccc
Q psy1919 637 SEVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIK-----ELTYMHSEGIMA---------GEL-KHGP----L-ALI 696 (737)
Q Consensus 637 ~~~~~lA~~l~~~~~~~~lG~GG~~y~~A~EgALKlk-----E~s~i~Ae~~~a---------~Ef-~HGP----i-ali 696 (737)
+.++++++.+.+.++++++|. |.++.+|...+..+. +-..+++..+.. .++ .+.. . ..+
T Consensus 26 ~aa~~i~~~l~~a~rI~i~G~-G~S~~~A~~~a~~~~~~~~~~r~g~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~ 104 (188)
T PRK13937 26 KVAEALIEALANGGKILLCGN-GGSAADAQHIAAELVGRFKKERPALPAIALTTDTSALTAIGNDYGFERVFSRQVEALG 104 (188)
T ss_pred HHHHHHHHHHHCCCEEEEEeC-cHhHHHHHHHHHHhhccccCCCCCcceEeccCcHHHHHHHhccCCHHHHHHHHHHhhC
Confidence 457788888999999999999 999998876543332 222444443320 011 0111 1 145
Q ss_pred cCCCeEEEEEcCCchhHHHHHHHHHhhhcccc
Q psy1919 697 DNSMPVIMILTRDPVYVKCMNALLQVIFTIFN 728 (737)
Q Consensus 697 d~~t~Vi~l~~~d~~~~k~~~~l~ei~aR~~~ 728 (737)
+++..+|++...+.+ ..+++.++..+.||..
T Consensus 105 ~~~Dl~i~iS~sG~t-~~~~~~~~~ak~~g~~ 135 (188)
T PRK13937 105 RPGDVLIGISTSGNS-PNVLAALEKARELGMK 135 (188)
T ss_pred CCCCEEEEEeCCCCc-HHHHHHHHHHHHCCCe
Confidence 777778888766665 3466666666666643
No 136
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=89.21 E-value=1.5 Score=43.66 Aligned_cols=103 Identities=14% Similarity=0.139 Sum_probs=50.5
Q ss_pred hHHHcCCCeEEEEecchhHHHHHHHHHHHHHhcCCcEEEeccccccccCCCCCCCCeEEEEcCCCCcHHHHHHHHHHHHc
Q psy1919 472 IPEIRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKAR 551 (737)
Q Consensus 472 ~~~L~~akrI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~~~~~~l~~~dlvI~ISqSGeT~etl~al~~AKe~ 551 (737)
++.+-.-.+|||.|.|-=-.+...+-+=-+++- .+... ..+. .....+++-|-|+.+|..-+..+.++.++.+.+.
T Consensus 32 AQA~vgeG~IYi~G~~Em~~v~~~Al~g~E~l~--~~k~l-~~~~-~~~~~lt~~DRVllfs~~~~~~e~~~~a~~L~~~ 107 (172)
T PF10740_consen 32 AQAIVGEGTIYIYGFGEMEAVEAEALYGAEPLP--SAKRL-SEDL-ENFDELTETDRVLLFSPFSTDEEAVALAKQLIEQ 107 (172)
T ss_dssp HHHHHTT--EEEEE-GGGGGGHHHHHCSTT--T--TEEE---TT---------TT-EEEEEES-S--HHHHHHHHHHHHH
T ss_pred HHHHhcCCEEEEEecChHHHHHHHHHcCCCCCc--hhhcC-cccc-cccccccccceEEEEeCCCCCHHHHHHHHHHHHC
Confidence 444567789999999975433222211111110 11111 1011 0112355667788888888889999999999999
Q ss_pred CCeEEEEe-c-CCCCccccccceEEEcCC
Q psy1919 552 GALIVGVT-N-TVGSSISRESHCGIHINA 578 (737)
Q Consensus 552 Ga~tIaIT-n-~~~S~La~~AD~~L~~~a 578 (737)
|+++++|+ + ..+.+|+.+||..|.+..
T Consensus 108 gi~~v~Vs~~~~~~~~l~~~~~~~Idl~~ 136 (172)
T PF10740_consen 108 GIPFVGVSPNKPDEEDLEDLADVHIDLKL 136 (172)
T ss_dssp T--EEEEE-SS---TTGGG-SSS-EE---
T ss_pred CCCEEEEEecCCCCCchhhhhhheeeccc
Confidence 99999999 3 345568999999888764
No 137
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=88.90 E-value=1.8 Score=51.83 Aligned_cols=88 Identities=9% Similarity=0.053 Sum_probs=60.9
Q ss_pred cHHHHHHHHHHcCCCeEEEEecCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCeEEEEEcCCchhHHH
Q psy1919 636 DSEVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKC 715 (737)
Q Consensus 636 ~~~~~~lA~~l~~~~~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPialid~~t~Vi~l~~~d~~~~k~ 715 (737)
.+.++++++.+.+.++++++|. |.++.+|.+...||.-+ .+++..+.-..+..-....++++..+|+|.-.+.+. .+
T Consensus 455 ~~~l~~aa~~L~~a~rI~i~G~-G~S~~~A~~~~~~l~~l-g~~~~~~~d~~~~~~~~~~l~~~DvvI~iS~sG~t~-e~ 531 (638)
T PRK14101 455 FEHVEQAIDILNNARRIEFYGL-GNSNIVAQDAHYKFFRF-GIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAP-EL 531 (638)
T ss_pred HHHHHHHHHHHhcCCEEEEEEc-cHHHHHHHHHHHHHhcC-CceEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCCCH-HH
Confidence 3678889999999999999999 99999999999998775 455554432222222234567887777776556553 35
Q ss_pred HHHHHHhhhcc
Q psy1919 716 MNALLQVIFTI 726 (737)
Q Consensus 716 ~~~l~ei~aR~ 726 (737)
++.++..+.+|
T Consensus 532 i~~~~~Ak~~G 542 (638)
T PRK14101 532 LRVLDVAMQAG 542 (638)
T ss_pred HHHHHHHHHCC
Confidence 55555555554
No 138
>PRK15482 transcriptional regulator MurR; Provisional
Probab=87.60 E-value=4.1 Score=43.61 Aligned_cols=84 Identities=8% Similarity=-0.022 Sum_probs=57.7
Q ss_pred HHHHHHHHHHcCCCeEEEEecCCCCHHHHHHHHHHHHHhcccccccccccccccccc---ccccCCCeEEEEEcCCchhH
Q psy1919 637 SEVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPL---ALIDNSMPVIMILTRDPVYV 713 (737)
Q Consensus 637 ~~~~~lA~~l~~~~~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPi---alid~~t~Vi~l~~~d~~~~ 713 (737)
+.++++++.+.++++++++|. |.++.+|...+.||.-+ ..++..+.. .|... ..++++..+|+|--.+.+ .
T Consensus 123 ~~l~~~~~~i~~A~~I~i~G~-G~S~~~A~~l~~~l~~~-g~~~~~~~d---~~~~~~~~~~~~~~Dv~i~iS~sg~t-~ 196 (285)
T PRK15482 123 ARLQKIIEVISKAPFIQITGL-GGSALVGRDLSFKLMKI-GYRVACEAD---THVQATVSQALKKGDVQIAISYSGSK-K 196 (285)
T ss_pred HHHHHHHHHHHhCCeeEEEEe-ChhHHHHHHHHHHHHhC-CCeeEEecc---HhHHHHHHhcCCCCCEEEEEeCCCCC-H
Confidence 457788888889999999999 99999999999999865 334443321 13322 345677777777666655 3
Q ss_pred HHHHHHHHhhhcc
Q psy1919 714 KCMNALLQVIFTI 726 (737)
Q Consensus 714 k~~~~l~ei~aR~ 726 (737)
.++..++..+.+|
T Consensus 197 ~~~~~~~~a~~~g 209 (285)
T PRK15482 197 EIVLCAEAARKQG 209 (285)
T ss_pred HHHHHHHHHHHCC
Confidence 3555666655555
No 139
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=87.33 E-value=3.2 Score=42.13 Aligned_cols=86 Identities=14% Similarity=0.059 Sum_probs=54.4
Q ss_pred HHHHHHHHHcCCCeEEEEecCCCCHHHHHHHHHHHH-----Hhccccccccccccccccc---------------c-ccc
Q psy1919 638 EVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIK-----ELTYMHSEGIMAGELKHGP---------------L-ALI 696 (737)
Q Consensus 638 ~~~~lA~~l~~~~~~~~lG~GG~~y~~A~EgALKlk-----E~s~i~Ae~~~a~Ef~HGP---------------i-ali 696 (737)
.++.+++.+.+.+++++.|. |.++.+|...+..|. ....+++..+ .+..|.+ . +..
T Consensus 33 a~~~i~~al~~~~rI~i~G~-G~S~~~A~~~a~~l~~~~~~~r~g~~~~~~--~d~~~~~~~~~d~~~~~~~~~~~~~~~ 109 (192)
T PRK00414 33 AAVLIADSFKAGGKVLSCGN-GGSHCDAMHFAEELTGRYRENRPGYPAIAI--SDVSHLSCVSNDFGYDYVFSRYVEAVG 109 (192)
T ss_pred HHHHHHHHHHCCCEEEEEeC-cHHHHHHHHHHHHhcccccCCCCCceEEec--CcHHHHhhhhccCCHHHHHHHHHHHhC
Confidence 34556666667799999999 999999998885552 1223444433 3332322 1 234
Q ss_pred cCCCeEEEEEcCCchhHHHHHHHHHhhhccc
Q psy1919 697 DNSMPVIMILTRDPVYVKCMNALLQVIFTIF 727 (737)
Q Consensus 697 d~~t~Vi~l~~~d~~~~k~~~~l~ei~aR~~ 727 (737)
+++..+|+|...+++ ..++..++..+.||.
T Consensus 110 ~~~Dv~I~iS~SG~t-~~~i~~~~~ak~~g~ 139 (192)
T PRK00414 110 REGDVLLGISTSGNS-GNIIKAIEAARAKGM 139 (192)
T ss_pred CCCCEEEEEeCCCCC-HHHHHHHHHHHHCCC
Confidence 777888888777765 335566666666553
No 140
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=87.17 E-value=2.9 Score=46.09 Aligned_cols=102 Identities=13% Similarity=0.044 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHcCCCeEEEEecCCCCHHHHHHHHHHHHHhccccccccccccccccccccccC
Q psy1919 619 IKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDN 698 (737)
Q Consensus 619 ~~~l~~l~~~i~~vl~~~~~~~~lA~~l~~~~~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPialid~ 698 (737)
.+.+..+|+++++++..... ..+...+.+.++++++|. |.++..|....-++.....+++..+.. .|.|. .+++
T Consensus 5 ~~~~~~~~~q~~~a~~~~~~-~~~~~~~~~~~~I~i~G~-GgS~~~a~~~~~~l~~~~~~~~~~~~~---~~~~~-~~~~ 78 (337)
T PRK08674 5 LEEYLNWPEQFEEALEIAIS-LDLEEDLEKIDNIVISGM-GGSGIGGDLLRILLFDELKVPVFVNRD---YTLPA-FVDE 78 (337)
T ss_pred HHHHHhHHHHHHHHHHhhhc-cchhhhhcCCCEEEEEEC-cHHHHHHHHHHHHHHhcCCCcEEEeCc---cchhh-cCCC
Confidence 34566788888887642111 223344457789999999 888888887776664555555554322 23343 3477
Q ss_pred CCeEEEEEcCCchhHHHHHHHHHhhhccc
Q psy1919 699 SMPVIMILTRDPVYVKCMNALLQVIFTIF 727 (737)
Q Consensus 699 ~t~Vi~l~~~d~~~~k~~~~l~ei~aR~~ 727 (737)
++.+|++...+.+ ..++..++..+.|+.
T Consensus 79 ~dlvI~iS~SG~T-~e~~~a~~~a~~~ga 106 (337)
T PRK08674 79 KTLVIAVSYSGNT-EETLSAVEQALKRGA 106 (337)
T ss_pred CcEEEEEcCCCCC-HHHHHHHHHHHHCCC
Confidence 7777777655655 446666666666653
No 141
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=87.16 E-value=10 Score=45.66 Aligned_cols=122 Identities=15% Similarity=0.207 Sum_probs=66.4
Q ss_pred CCeEEEEcCC-C-CcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCCCCccccchhHHHHHHHHHHHHHHH
Q psy1919 526 DDVCFFISQS-G-ETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALV 603 (737)
Q Consensus 526 ~dlvI~ISqS-G-eT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E~~vasTksftsql~~L~lLal~ 603 (737)
-|++|++... - +..-....++.|+++|+++|.|- ...|..+..||..|.+..|.+.. +++.++-..
T Consensus 156 ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvid-p~~s~ta~~ad~~i~i~Pgtd~a-----------l~lal~~~l 223 (671)
T TIGR01591 156 ADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVID-PRKTETAKIADLHIPLKPGTDIA-----------LLNAMANVI 223 (671)
T ss_pred CCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEEC-CCCChhhHhhCcccCCCCCcHHH-----------HHHHHHHHH
Confidence 4666666332 2 22345577788889999999985 45678888999888776554321 112222222
Q ss_pred HhhhhcchHHHHHHHHHHHHHH--------HHHHHHHhc-ccHHHHHHHHHHcCCC-eEEEEecCCCC
Q psy1919 604 MCEDRISLQTRRNEIIKGLKVI--------HEQIREVLQ-MDSEVQQLAKEMYEQK-SMLLMGRGGYN 661 (737)
Q Consensus 604 la~~~~~~~~~~~~~~~~l~~l--------~~~i~~vl~-~~~~~~~lA~~l~~~~-~~~~lG~GG~~ 661 (737)
+..... ..+..++....++.+ |+.+.++.. ..+.++++|+.+.+.+ .+++.|. |..
T Consensus 224 i~~~~~-d~~f~~~~t~gf~~~~~~~~~~t~e~~a~~~gv~~~~i~~lA~~l~~~~~~~i~~g~-g~~ 289 (671)
T TIGR01591 224 IEEGLY-DKAFIEKRTEGFEEFREIVKGYTPEYVEDITGVPADLIREAARMYAKAGSAAILWGM-GVT 289 (671)
T ss_pred HHCCCc-CHHHHHHHhhCHHHHHHHHHhCCHHHHHHHHCcCHHHHHHHHHHHhhCCCeEEEecC-ccc
Confidence 222211 111112222222222 333333332 2457889999998776 4677787 543
No 142
>PRK09939 putative oxidoreductase; Provisional
Probab=86.70 E-value=10 Score=46.63 Aligned_cols=57 Identities=19% Similarity=0.295 Sum_probs=37.5
Q ss_pred CCCeEEEEcCC-CCc-HHHHHHHHHHHHcCCeEEEEecCCCC-----------------ccccccceEEEcCCCCC
Q psy1919 525 RDDVCFFISQS-GET-ADSLMALRYCKARGALIVGVTNTVGS-----------------SISRESHCGIHINAGPE 581 (737)
Q Consensus 525 ~~dlvI~ISqS-GeT-~etl~al~~AKe~Ga~tIaITn~~~S-----------------~La~~AD~~L~~~ag~E 581 (737)
.-|++|++-+. +++ +-+...++.|+++|+++|.|-....- .-++.||..|.+..|.+
T Consensus 208 ~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~~~gl~rft~p~~~~~~~~~~ta~~Ad~~l~irPGtD 283 (759)
T PRK09939 208 KCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQERGLERFTAPQNPFEMLTNSETQLASAYYNVRIGGD 283 (759)
T ss_pred hCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCCcccccccccccccchhccccchhhhCeeeCCCCChH
Confidence 35677776544 554 33567778899999999998653321 13688998887765433
No 143
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=86.32 E-value=15 Score=38.97 Aligned_cols=96 Identities=9% Similarity=0.127 Sum_probs=56.2
Q ss_pred HHHcCCCeEEEEecchhHHHHHHHHHHHHHhcCCcEEEe--cccccccc-CCCCCCCCeEEEEcCCCCcHHHHHHHHHHH
Q psy1919 473 PEIRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVE--LASDFLDR-NTPVFRDDVCFFISQSGETADSLMALRYCK 549 (737)
Q Consensus 473 ~~L~~akrI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~--~ase~~~~-~~~l~~~dlvI~ISqSGeT~etl~al~~AK 549 (737)
..+...+.|+|+|+-.- ++.+-.++.+.+|...... .+.-|... .......+++|++....+. .|++.|.
T Consensus 66 ~~i~~~~~Il~Vstr~~---~~~~V~k~A~~tg~~~i~~Rw~pGtlTN~~~~~f~~P~llIV~Dp~~d~----qAI~EA~ 138 (249)
T PTZ00254 66 AAIENPADVVVVSSRPY---GQRAVLKFAQYTGASAIAGRFTPGTFTNQIQKKFMEPRLLIVTDPRTDH----QAIREAS 138 (249)
T ss_pred HHHhCCCcEEEEEcCHH---HHHHHHHHHHHhCCeEECCcccCCCCCCccccccCCCCEEEEeCCCcch----HHHHHHH
Confidence 34556788999988763 2333334444444332211 12222111 1123456788888765443 5788889
Q ss_pred HcCCeEEEEecCCCCccccccceEEEcC
Q psy1919 550 ARGALIVGVTNTVGSSISRESHCGIHIN 577 (737)
Q Consensus 550 e~Ga~tIaITn~~~S~La~~AD~~L~~~ 577 (737)
..|++||+|++.. |++ ++.|+.|+.+
T Consensus 139 ~lnIPvIal~DTd-s~p-~~VDy~IP~N 164 (249)
T PTZ00254 139 YVNIPVIALCDTD-SPL-EYVDIAIPCN 164 (249)
T ss_pred HhCCCEEEEecCC-CCc-ccCceeeCCC
Confidence 9999999999864 443 4577777654
No 144
>PRK13936 phosphoheptose isomerase; Provisional
Probab=86.31 E-value=5.8 Score=40.38 Aligned_cols=88 Identities=13% Similarity=0.083 Sum_probs=55.4
Q ss_pred HHHHHHHHHHcCCCeEEEEecCCCCHHHHHHHHHHHH-----Hhccccccccc--------cccccc------ccc-ccc
Q psy1919 637 SEVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIK-----ELTYMHSEGIM--------AGELKH------GPL-ALI 696 (737)
Q Consensus 637 ~~~~~lA~~l~~~~~~~~lG~GG~~y~~A~EgALKlk-----E~s~i~Ae~~~--------a~Ef~H------GPi-ali 696 (737)
+.++.+++.+.+.+++++.|. |.+..+|...+.||. +...+++.... .++-.| ..+ ...
T Consensus 31 ~a~~~~~~~l~~a~~I~i~G~-G~S~~~A~~~~~~l~~r~~~~r~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~ 109 (197)
T PRK13936 31 QAVELMVQALLNEGKILACGN-GGSAADAQHFSAELLNRFERERPSLPAIALTTDTSTLTAIANDYSYNEVFSKQVRALG 109 (197)
T ss_pred HHHHHHHHHHHCCCEEEEEeC-cHhHHHHHHHHHHccCccCCCCccceeEecCCcHHHHHHHhhcCCHHHHHHHHHHHhC
Confidence 456678888899999999999 999999999999886 33334443220 000001 111 233
Q ss_pred cCCCeEEEEEcCCchhHHHHHHHHHhhhcc
Q psy1919 697 DNSMPVIMILTRDPVYVKCMNALLQVIFTI 726 (737)
Q Consensus 697 d~~t~Vi~l~~~d~~~~k~~~~l~ei~aR~ 726 (737)
+++..+|+|...+.+. .++..++..+.||
T Consensus 110 ~~~Dv~i~iS~sG~t~-~~~~~~~~ak~~g 138 (197)
T PRK13936 110 QPGDVLLAISTSGNSA-NVIQAIQAAHERE 138 (197)
T ss_pred CCCCEEEEEeCCCCcH-HHHHHHHHHHHCC
Confidence 6787888887666653 3555555555554
No 145
>PRK02947 hypothetical protein; Provisional
Probab=85.89 E-value=4.9 Score=42.46 Aligned_cols=89 Identities=11% Similarity=-0.057 Sum_probs=55.1
Q ss_pred HHHHHHHHHHcCCCeEEEEecCCCCHHHHHHHHHHHHHhccccccccc------------cccccccc------cccccC
Q psy1919 637 SEVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIM------------AGELKHGP------LALIDN 698 (737)
Q Consensus 637 ~~~~~lA~~l~~~~~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~------------a~Ef~HGP------ialid~ 698 (737)
+.++.+++.+.+.+++++.|. |.+..+|.+...|+--+..+...+.+ .-|..+|+ ...+.+
T Consensus 28 ~aa~lla~~i~~a~~I~i~G~-G~S~~vA~~~~~rlg~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (246)
T PRK02947 28 KAADLIADSIRNGGLIYVFGT-GHSHILAEEVFYRAGGLAPVNPILEPSLMLHEGAVASSYLERVEGYAKAILDRYDIRP 106 (246)
T ss_pred HHHHHHHHHHHCCCEEEEEcC-cHHHHHHHHhccccccCcccCCCCCHHHhccccHHHHHHhhhcccHHHHHHHHcCCCC
Confidence 345667777888999999999 99999999988887322211111111 11233332 234567
Q ss_pred CCeEEEEEcCCchhHHHHHHHHHhhhccc
Q psy1919 699 SMPVIMILTRDPVYVKCMNALLQVIFTIF 727 (737)
Q Consensus 699 ~t~Vi~l~~~d~~~~k~~~~l~ei~aR~~ 727 (737)
+..+|+|...+.+. .++..++..+.||.
T Consensus 107 ~Dv~i~iS~sG~t~-~~i~~~~~a~~~g~ 134 (246)
T PRK02947 107 GDVLIVVSNSGRNP-VPIEMALEAKERGA 134 (246)
T ss_pred CCEEEEEeCCCCCH-HHHHHHHHHHHCCC
Confidence 77777777666653 36666666666553
No 146
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=85.16 E-value=14 Score=38.08 Aligned_cols=76 Identities=14% Similarity=0.040 Sum_probs=59.0
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCeEEEEEcCCchhH--HHHHHHHHhhhcc
Q psy1919 649 QKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYV--KCMNALLQVIFTI 726 (737)
Q Consensus 649 ~~~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPialid~~t~Vi~l~~~d~~~~--k~~~~l~ei~aR~ 726 (737)
..++++.|. |-+==+|+--|.-|.=+ ..+|.-....|-.||-.-++.++..||+|-..+++.+ .++..+++.+++.
T Consensus 39 ~gkv~V~G~-GkSG~Igkk~Aa~L~s~-G~~a~fv~p~ea~hgdlg~i~~~DvviaiS~SGeT~el~~~~~~aK~~g~~l 116 (202)
T COG0794 39 KGKVFVTGV-GKSGLIGKKFAARLAST-GTPAFFVGPAEALHGDLGMITPGDVVIAISGSGETKELLNLAPKAKRLGAKL 116 (202)
T ss_pred CCcEEEEcC-ChhHHHHHHHHHHHHcc-CCceEEecCchhccCCccCCCCCCEEEEEeCCCcHHHHHHHHHHHHHcCCcE
Confidence 567999999 87777887666666654 6788888999999999999999999999988888744 2444555555544
No 147
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=84.93 E-value=19 Score=36.93 Aligned_cols=94 Identities=14% Similarity=0.133 Sum_probs=54.3
Q ss_pred HHcCCCeEEEEecchhHHHHHHHHHHHHHhcCCcEEE--ecccccccc-CCCCCCCCeEEEEcCCCCcHHHHHHHHHHHH
Q psy1919 474 EIRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMV--ELASDFLDR-NTPVFRDDVCFFISQSGETADSLMALRYCKA 550 (737)
Q Consensus 474 ~L~~akrI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~--~~ase~~~~-~~~l~~~dlvI~ISqSGeT~etl~al~~AKe 550 (737)
.+. .++|+|+|.-.-.. .+-..+.+.+|..... ..+.-+... .......|++|++....+. .|++.|.+
T Consensus 58 ~i~-~~~ILfVgtk~~~~---~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~dp~~~~----~Av~EA~~ 129 (196)
T TIGR01012 58 RIE-PEDILVVSARIYGQ---KPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPEVVVVTDPRADH----QALKEASE 129 (196)
T ss_pred Hhh-CCeEEEEecCHHHH---HHHHHHHHHhCCceECCeeCCCCCCCccccccCCCCEEEEECCcccc----HHHHHHHH
Confidence 344 77899999876432 2222233333333211 112212100 1123456788888765554 58888999
Q ss_pred cCCeEEEEecCCCCccccccceEEEcC
Q psy1919 551 RGALIVGVTNTVGSSISRESHCGIHIN 577 (737)
Q Consensus 551 ~Ga~tIaITn~~~S~La~~AD~~L~~~ 577 (737)
.|+|||||++....| +..|+.|+.+
T Consensus 130 l~IP~Iai~DTn~dp--~~vdypIP~N 154 (196)
T TIGR01012 130 VGIPIVALCDTDNPL--RYVDLVIPTN 154 (196)
T ss_pred cCCCEEEEeeCCCCC--ccCCEEECCC
Confidence 999999999975554 5577777544
No 148
>KOG0399|consensus
Probab=84.74 E-value=0.78 Score=56.79 Aligned_cols=65 Identities=22% Similarity=0.320 Sum_probs=50.2
Q ss_pred CceEEEEccCCchhhHHHHHHhhhhcccccccCCCcEEEeEeeccccCCCCCCCCCCeeeCCCCCEEEEEcceecch
Q psy1919 11 GVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHNGIVTNY 87 (737)
Q Consensus 11 ~~~i~~~K~~G~v~~l~~~~~~~~~~~~l~~~~~~~~~IgHtR~at~g~~~~~nahP~~~~~~~~~avvhNG~I~N~ 87 (737)
..+-.|+|+.=+..+|.....+ .+-+ .+.++.+|-|.|++|+--|++..+||+. .+.|||+|--.
T Consensus 255 sn~TIVYKGql~~~ql~~yY~D----L~N~-~y~S~~AlvHsRFSTNTfPsWdrAQPmR-------~l~HNGEINTl 319 (2142)
T KOG0399|consen 255 SNQTIVYKGQLRPEQLYNYYPD----LTNA-EYKSHFALVHSRFSTNTFPSWDRAQPMR-------FLAHNGEINTL 319 (2142)
T ss_pred cCceEEEecccCHHHHhhhccc----ccch-hhcccceeeeeccccCCCCCccccccch-------hhhccCceeee
Confidence 3456789988888888764221 1112 4789999999999999999999999994 58899999633
No 149
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=84.68 E-value=19 Score=41.68 Aligned_cols=56 Identities=14% Similarity=0.250 Sum_probs=38.0
Q ss_pred CCCeEEEEcCCC--CcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCCCC
Q psy1919 525 RDDVCFFISQSG--ETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE 581 (737)
Q Consensus 525 ~~dlvI~ISqSG--eT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E 581 (737)
.-+++|++...- +.......++.++++|+++|.|-.. .|..+..||..|.+..|.+
T Consensus 156 ~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~-~s~ta~~Ad~~l~i~PGtD 213 (512)
T cd02753 156 EADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPR-RTELARFADLHLQLRPGTD 213 (512)
T ss_pred hCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCC-CccchHhhCeeeCCCCCcH
Confidence 346777665442 2233445667788999999888765 5677888999887765544
No 150
>PRK13938 phosphoheptose isomerase; Provisional
Probab=84.55 E-value=6.5 Score=40.22 Aligned_cols=90 Identities=12% Similarity=0.048 Sum_probs=60.6
Q ss_pred HHHHHHHHHHcCCCeEEEEecCCCCHHHHHHHHHHHH-----Hhccccccccccccccccc----------------ccc
Q psy1919 637 SEVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIK-----ELTYMHSEGIMAGELKHGP----------------LAL 695 (737)
Q Consensus 637 ~~~~~lA~~l~~~~~~~~lG~GG~~y~~A~EgALKlk-----E~s~i~Ae~~~a~Ef~HGP----------------ial 695 (737)
+.++.+++.+.+..++++.|. |.+..+|...+.||. +...+++.+..... .|-. -..
T Consensus 33 ~~a~~~~~~l~~g~rI~i~G~-G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l~~~~-~~~~a~~nd~~~~~~~~~~~~~~ 110 (196)
T PRK13938 33 AIGDRLIAGYRAGARVFMCGN-GGSAADAQHFAAELTGHLIFDRPPLGAEALHANS-SHLTAVANDYDYDTVFARALEGS 110 (196)
T ss_pred HHHHHHHHHHHCCCEEEEEeC-cHHHHHHHHHHHHcCCCccCCcCccceEEEeCCh-HHHHHhhccccHHHHHHHHHHhc
Confidence 345667777889999999999 999999999999995 33344444433332 1211 244
Q ss_pred ccCCCeEEEEEcCCchhHHHHHHHHHhhhccccc
Q psy1919 696 IDNSMPVIMILTRDPVYVKCMNALLQVIFTIFNL 729 (737)
Q Consensus 696 id~~t~Vi~l~~~d~~~~k~~~~l~ei~aR~~~~ 729 (737)
++++..+|++...+.+ ..++..++..+.+|..+
T Consensus 111 ~~~~DllI~iS~SG~t-~~vi~a~~~Ak~~G~~v 143 (196)
T PRK13938 111 ARPGDTLFAISTSGNS-MSVLRAAKTARELGVTV 143 (196)
T ss_pred CCCCCEEEEEcCCCCC-HHHHHHHHHHHHCCCEE
Confidence 6777778888766665 34667777777776443
No 151
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=84.50 E-value=6.5 Score=37.54 Aligned_cols=90 Identities=17% Similarity=0.098 Sum_probs=57.0
Q ss_pred HHHHHHHHHHcCCCeEEEEecCCCCHHHHHHHHHHHHHhcccccccccccc--------------ccccc----ccc--c
Q psy1919 637 SEVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGE--------------LKHGP----LAL--I 696 (737)
Q Consensus 637 ~~~~~lA~~l~~~~~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~E--------------f~HGP----ial--i 696 (737)
..++.+++.+.+...++++|. |.+..+|.+.+..+.-...++....+.-- +..|- ... +
T Consensus 23 ~aa~~i~~~~~~gg~i~~~G~-G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (138)
T PF13580_consen 23 KAADLIAEALRNGGRIFVCGN-GHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLALYDI 101 (138)
T ss_dssp HHHHHHHHHHHTT--EEEEES-THHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHHTT-
T ss_pred HHHHHHHHHHHCCCEEEEEcC-chhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHHHcCC
Confidence 345667788888999999999 99999999999999887655544332221 11121 123 5
Q ss_pred cCCCeEEEEEcCCchhHHHHHHHHHhhhcccc
Q psy1919 697 DNSMPVIMILTRDPVYVKCMNALLQVIFTIFN 728 (737)
Q Consensus 697 d~~t~Vi~l~~~d~~~~k~~~~l~ei~aR~~~ 728 (737)
.++..+|+|...+.. .-.++.++..+.||..
T Consensus 102 ~~gDvli~iS~SG~s-~~vi~a~~~Ak~~G~~ 132 (138)
T PF13580_consen 102 RPGDVLIVISNSGNS-PNVIEAAEEAKERGMK 132 (138)
T ss_dssp -TT-EEEEEESSS-S-HHHHHHHHHHHHTT-E
T ss_pred CCCCEEEEECCCCCC-HHHHHHHHHHHHCCCE
Confidence 677778888776655 5577788888877743
No 152
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=84.31 E-value=9.8 Score=38.91 Aligned_cols=87 Identities=16% Similarity=0.131 Sum_probs=55.4
Q ss_pred HHHHHHHHHcCCCeEEEEecCCCCHHHHHHHHHHHH-----Hhcccccccccc--------------cccccccc-cccc
Q psy1919 638 EVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIK-----ELTYMHSEGIMA--------------GELKHGPL-ALID 697 (737)
Q Consensus 638 ~~~~lA~~l~~~~~~~~lG~GG~~y~~A~EgALKlk-----E~s~i~Ae~~~a--------------~Ef~HGPi-alid 697 (737)
.++.+++.+.+..++++.|- |.+.++|...+-+|. +-..++|..... ++.+=.++ +...
T Consensus 30 a~~~l~~~l~~~~rI~~~G~-GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~and~~~~~~f~~ql~~~~~ 108 (196)
T PRK10886 30 AAMTLVQSLLNGNKILCCGN-GTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGH 108 (196)
T ss_pred HHHHHHHHHHcCCEEEEEEC-cHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhccccHHHHHHHHHHHcCC
Confidence 45677778889999999999 999999999999883 333445443321 11111112 2356
Q ss_pred CCCeEEEEEcCCchhHHHHHHHHHhhhcc
Q psy1919 698 NSMPVIMILTRDPVYVKCMNALLQVIFTI 726 (737)
Q Consensus 698 ~~t~Vi~l~~~d~~~~k~~~~l~ei~aR~ 726 (737)
++..+|+|...+++. .++..++..+.+|
T Consensus 109 ~gDvli~iS~SG~s~-~v~~a~~~Ak~~G 136 (196)
T PRK10886 109 AGDVLLAISTRGNSR-DIVKAVEAAVTRD 136 (196)
T ss_pred CCCEEEEEeCCCCCH-HHHHHHHHHHHCC
Confidence 777888887777653 3555555555544
No 153
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=83.06 E-value=4 Score=37.80 Aligned_cols=71 Identities=11% Similarity=-0.016 Sum_probs=49.6
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCeEEEEEcCCchhHHHHHHHHHhhhccc
Q psy1919 651 SMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIFTIF 727 (737)
Q Consensus 651 ~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPialid~~t~Vi~l~~~d~~~~k~~~~l~ei~aR~~ 727 (737)
+++++|. |.++.+|.....++.....+++......++.+ .++++..+|++-..+++ ..+++.++..+.|+.
T Consensus 1 ~I~i~G~-G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~dl~I~iS~SG~t-~e~i~~~~~a~~~g~ 71 (119)
T cd05017 1 NIVILGM-GGSGIGGDLLESLLLDEAKIPVYVVKDYTLPA----FVDRKTLVIAVSYSGNT-EETLSAVEQAKERGA 71 (119)
T ss_pred CEEEEEc-CHHHHHHHHHHHHHHhccCCCEEEecCccCcC----CCCCCCEEEEEECCCCC-HHHHHHHHHHHHCCC
Confidence 4789999 99999999888888886667776655443321 55677777777666655 446666666666653
No 154
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=82.81 E-value=20 Score=42.14 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=36.9
Q ss_pred CCeEEEEcCCCC-c-HHHHHHHHHHHHc--CCeEEEEecCCCCccccccceEEEcCCCCC
Q psy1919 526 DDVCFFISQSGE-T-ADSLMALRYCKAR--GALIVGVTNTVGSSISRESHCGIHINAGPE 581 (737)
Q Consensus 526 ~dlvI~ISqSGe-T-~etl~al~~AKe~--Ga~tIaITn~~~S~La~~AD~~L~~~ag~E 581 (737)
-+++|++...-. | ......++.++++ |+++|.|-. ..|..+..||..|.+..|.+
T Consensus 158 ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP-~~t~ta~~Ad~~l~i~PGtD 216 (565)
T cd02754 158 ADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDP-RRTRTADIADLHLPIRPGTD 216 (565)
T ss_pred CCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcC-CCCcchHHhCeeeCCCCCcc
Confidence 466776655432 2 2234456677777 999888854 56788899999887765544
No 155
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=81.49 E-value=36 Score=35.16 Aligned_cols=92 Identities=12% Similarity=0.142 Sum_probs=53.9
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHHHhcCCcEEEe--cccccccc-CCCCCCCCeEEEEcCCCCcHHHHHHHHHHHHcCC
Q psy1919 477 RCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVE--LASDFLDR-NTPVFRDDVCFFISQSGETADSLMALRYCKARGA 553 (737)
Q Consensus 477 ~akrI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~--~ase~~~~-~~~l~~~dlvI~ISqSGeT~etl~al~~AKe~Ga 553 (737)
..++|.|+|+-.-+ ..+-..+.+.+|...... .+.-+... .......|++|++....+ ..|++.|++.|+
T Consensus 66 ~~~~ILfVgTk~~~---~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~~~~~~Pdliiv~dp~~~----~~AI~EA~kl~I 138 (204)
T PRK04020 66 EPEKILVVSSRQYG---QKPVQKFAEVVGAKAITGRFIPGTLTNPSLKGYIEPDVVVVTDPRGD----AQAVKEAIEVGI 138 (204)
T ss_pred cCCeEEEEeCCHHH---HHHHHHHHHHhCCeeecCccCCCcCcCcchhccCCCCEEEEECCccc----HHHHHHHHHhCC
Confidence 46789999776632 222223333233332211 12111100 011125688998888666 568888999999
Q ss_pred eEEEEecCCCCccccccceEEEcC
Q psy1919 554 LIVGVTNTVGSSISRESHCGIHIN 577 (737)
Q Consensus 554 ~tIaITn~~~S~La~~AD~~L~~~ 577 (737)
+||||++....| +..|+.|+.+
T Consensus 139 P~IaivDTn~dp--~~VdypIP~N 160 (204)
T PRK04020 139 PVVALCDTDNLT--SNVDLVIPTN 160 (204)
T ss_pred CEEEEEeCCCCc--ccCceeECCC
Confidence 999999876555 5677777554
No 156
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=79.71 E-value=4.4 Score=42.65 Aligned_cols=75 Identities=15% Similarity=0.116 Sum_probs=53.7
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCeEEEEEcCCchhHHHHHHHHHhhhcccc
Q psy1919 651 SMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIFTIFN 728 (737)
Q Consensus 651 ~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPialid~~t~Vi~l~~~d~~~~k~~~~l~ei~aR~~~ 728 (737)
++++.|. |.++.+|.+.+.||..+ ..++..+...+..+--...++++..+|++...+.+ ..+++.++..+.+|..
T Consensus 2 rI~i~G~-G~S~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t-~~~~~~~~~a~~~g~~ 76 (268)
T TIGR00393 2 KLVIVGI-GKSGLIGKKIVATFAST-GTPSFFLHPTEAMHGDLGMVEPNDVVLMISYSGES-LELLNLIPHLKRLSHK 76 (268)
T ss_pred cEEEEec-ChHHHHHHHHHHHHHhc-CCceEEeCHhHHhhcccCCCCCCCEEEEEeCCCCC-HHHHHHHHHHHHcCCc
Confidence 5899999 99999999999999874 55666665555555333557788888888766655 4466677776766533
No 157
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=77.66 E-value=3.5 Score=40.19 Aligned_cols=85 Identities=13% Similarity=0.032 Sum_probs=53.0
Q ss_pred HHHHHHHcCCCeEEEEecCCCCHHHHHHHHH------HHHHhccccccccc-cc--------ccc-cccc-----ccccC
Q psy1919 640 QQLAKEMYEQKSMLLMGRGGYNYATCMEGAL------KIKELTYMHSEGIM-AG--------ELK-HGPL-----ALIDN 698 (737)
Q Consensus 640 ~~lA~~l~~~~~~~~lG~GG~~y~~A~EgAL------KlkE~s~i~Ae~~~-a~--------Ef~-HGPi-----alid~ 698 (737)
+++++.+.+.++++++|. |.++.+|...+. |+..+ .+++..+. -. ++. ...+ ..+++
T Consensus 2 ~~~~~~l~~a~rI~~~G~-G~S~~~A~~~a~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 79 (154)
T TIGR00441 2 VLLADSFKAGGKVLICGN-GGSACDAQHFAAELTGRYRENRP-GLPAIALSADVSHLTCVSNDYGYEDVFSRQVEALGQK 79 (154)
T ss_pred hHHHHHHHCCCEEEEEeC-cHHHHHHHHHHHHhhcccccCCC-CceEEecCCcHHHHHHhhccCCHHHHHHHHHHHhCCC
Confidence 356778889999999999 999999998853 44333 55554433 00 000 1111 23467
Q ss_pred CCeEEEEEcCCchhHHHHHHHHHhhhccc
Q psy1919 699 SMPVIMILTRDPVYVKCMNALLQVIFTIF 727 (737)
Q Consensus 699 ~t~Vi~l~~~d~~~~k~~~~l~ei~aR~~ 727 (737)
+..+|++...+.+ ..++..++..+.||.
T Consensus 80 ~D~~i~iS~sG~t-~~~~~~~~~a~~~g~ 107 (154)
T TIGR00441 80 GDVLLGISTSGNS-KNVLKAIEAAKDKGM 107 (154)
T ss_pred CCEEEEEcCCCCC-HHHHHHHHHHHHCCC
Confidence 7777777666655 446666666666653
No 158
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=73.59 E-value=22 Score=41.40 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=38.0
Q ss_pred CCeEEEEc-CCCCc-HHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCCCC
Q psy1919 526 DDVCFFIS-QSGET-ADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE 581 (737)
Q Consensus 526 ~dlvI~IS-qSGeT-~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E 581 (737)
-+++|++- .-.++ +.....+..||++|+++|.|- ...++.++.||..|.+..|.+
T Consensus 158 ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvD-Pr~t~ta~~Ad~~l~i~PGtD 214 (501)
T cd02766 158 ADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVID-PYRTATAARADLHIQIRPGTD 214 (501)
T ss_pred CCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEEC-CCCCccHHHhCeeeccCCCcH
Confidence 45666553 33433 334466677899999998774 567889999999988765543
No 159
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=73.24 E-value=63 Score=37.05 Aligned_cols=56 Identities=18% Similarity=0.156 Sum_probs=37.8
Q ss_pred CCCeEEEEcCC-CCcH--HHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCCCC
Q psy1919 525 RDDVCFFISQS-GETA--DSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE 581 (737)
Q Consensus 525 ~~dlvI~ISqS-GeT~--etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E 581 (737)
.-+++|++... -++. .....+..+|++|+++|.|-. ..++.++.||..|.+..|.+
T Consensus 156 ~ad~il~~G~n~~~~~~~~~~~~~~~a~~~g~kiivIdP-r~t~ta~~AD~~i~i~PGtD 214 (454)
T cd02755 156 NARYIILFGRNLAEAIIVVDARRLMKALENGAKVVVVDP-RFSELASKADEWIPIKPGTD 214 (454)
T ss_pred cCCEEEEECcCcccccccHHHHHHHHHHHCCCeEEEECC-CCChhhHhhCEecCCCCCcH
Confidence 44667766443 3332 134556678889998888776 46888899999887765544
No 160
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=71.27 E-value=2.2 Score=44.06 Aligned_cols=36 Identities=50% Similarity=0.597 Sum_probs=31.6
Q ss_pred ccc--cccccceEEeccCcccccccceEEEeecCcccc
Q psy1919 121 QPL--EDKQVEYFFASDASAVIEHTNRVIFLERFDRGN 156 (737)
Q Consensus 121 ~~~--~~~~~~~~~~s~~~~~~~~~~~~i~l~~~~~~~ 156 (737)
+|| +..++.++|||+..++..++.+++.|+|||...
T Consensus 177 ~PL~~~~~~~~~~~aSE~~al~~~~~~~~~~~~~~~~~ 214 (215)
T cd00714 177 SPLVIGIGDGENFVASDAPALLEHTRRVIYLEDGDIAV 214 (215)
T ss_pred CCcEEEEcCCeEEEEECHHHHHHhcCEEEEECCCCEEe
Confidence 677 656678999999999999999999999999754
No 161
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=69.34 E-value=64 Score=37.07 Aligned_cols=56 Identities=18% Similarity=0.155 Sum_probs=37.5
Q ss_pred CCCeEEEEcCC-CCcH-HHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCCCC
Q psy1919 525 RDDVCFFISQS-GETA-DSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE 581 (737)
Q Consensus 525 ~~dlvI~ISqS-GeT~-etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E 581 (737)
.-|++|++... -++. -....+..+|++|+++|.| +...|+.++.||..|.+..|.+
T Consensus 170 ~ad~il~~G~N~~~~~~~~~~~l~~ar~~Gaklivi-dPr~s~ta~~Ad~~l~i~PGtD 227 (461)
T cd02750 170 NADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVV-SPDYSPSAKHADLWVPIKPGTD 227 (461)
T ss_pred cCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEE-cCCCCcchhhcCEEeccCCCcH
Confidence 34666666443 3331 2234456688999988888 4567889999999887765544
No 162
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=67.77 E-value=1.2e+02 Score=38.10 Aligned_cols=55 Identities=15% Similarity=0.148 Sum_probs=36.7
Q ss_pred CCeEEEE-cCCCCc-HHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCCCC
Q psy1919 526 DDVCFFI-SQSGET-ADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE 581 (737)
Q Consensus 526 ~dlvI~I-SqSGeT-~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E 581 (737)
-+++|++ +.-.+| .-....+..|+++|+++|.|- -.-|+.++.||..|.+..|.+
T Consensus 225 a~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvId-Pr~t~tA~~AD~wlpirPGTD 281 (912)
T TIGR03479 225 ADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIA-PDYNPSTIHADLWLPVRVGTD 281 (912)
T ss_pred CcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEEC-CCCChhhhhCCeecCCCCCcH
Confidence 3455555 333333 223455667888999999884 557888999999987765544
No 163
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=66.96 E-value=68 Score=40.92 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=39.3
Q ss_pred CCeEEEEcCC-CCc-HHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCCCC
Q psy1919 526 DDVCFFISQS-GET-ADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE 581 (737)
Q Consensus 526 ~dlvI~ISqS-GeT-~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E 581 (737)
-+++|++... .++ +-....+..||++|+++|.|- -.-+..++.||..|.+..|.+
T Consensus 222 Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvID-PR~t~tA~~AD~~l~irPGTD 278 (1009)
T TIGR01553 222 SDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHID-PRFNRTATVADLYAPIRSGSD 278 (1009)
T ss_pred CCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEc-CCCCchhHhhccEeCCCCChH
Confidence 4667766443 444 334566777899999999885 457888999999888776544
No 164
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=66.82 E-value=33 Score=37.33 Aligned_cols=89 Identities=12% Similarity=-0.005 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCCCeEEEEecCCCCHHHH-HHHHHHHHHhccc-------ccccc----cccccccccc---------cc
Q psy1919 637 SEVQQLAKEMYEQKSMLLMGRGGYNYATC-MEGALKIKELTYM-------HSEGI----MAGELKHGPL---------AL 695 (737)
Q Consensus 637 ~~~~~lA~~l~~~~~~~~lG~GG~~y~~A-~EgALKlkE~s~i-------~Ae~~----~a~Ef~HGPi---------al 695 (737)
..++.+++.+.+..+++|+|. |.+..+| +.++-++--...- .+-|. .+-|...++. ..
T Consensus 50 ~av~~~~~~l~~ggrI~~~Ga-GtSg~la~~da~e~~~tfg~~~~~v~~iiagG~~a~~~a~e~~ed~~~~~~~~l~~~~ 128 (299)
T PRK05441 50 AAVDAAAAALRQGGRLIYIGA-GTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKAVEGAEDDAELGAADLKAIN 128 (299)
T ss_pred HHHHHHHHHHHCCCEEEEEcC-cHHHHHHHHHHHhCcCccCCCchhceeeecCCcHHHHhcccccCChHHHHHHHHHhcC
Confidence 346677888889999999999 8888888 4444333221110 00000 0112222222 12
Q ss_pred ccCCCeEEEEEcCCchhHHHHHHHHHhhhccc
Q psy1919 696 IDNSMPVIMILTRDPVYVKCMNALLQVIFTIF 727 (737)
Q Consensus 696 id~~t~Vi~l~~~d~~~~k~~~~l~ei~aR~~ 727 (737)
+.++..||++...+.+ ..++..++..+.+|.
T Consensus 129 l~~~DvvI~IS~SG~T-~~vi~al~~Ak~~Ga 159 (299)
T PRK05441 129 LTAKDVVVGIAASGRT-PYVIGALEYARERGA 159 (299)
T ss_pred CCCCCEEEEEeCCCCC-HHHHHHHHHHHHCCC
Confidence 5677778888777765 336666666666553
No 165
>PF10432 bact-PGI_C: Bacterial phospho-glucose isomerase C-terminal region; InterPro: IPR019490 Phosphoglucose isomerase (PGI) catalyses the interconversion of phosphoglucose and phosphofructose, and is a component of many sugar metabolic pathways. In some archaea and bacteria PGI activity occurs via a bifunctional enzyme that also exhibits phosphomannose isomerase (PMI) activity. Though not closely related to eukaryotic PGIs, the bifunctional enzyme is similar enough that the sequence includes the cluster of threonines and serines that forms the sugar phosphate-binding site in conventional PGI. This entry represents the C-terminal half of the bifunctional PGI/PMI enzyme, which contains many of the active catalytic site residues. The enzyme is thought to use the same catalytic mechanisms for both glucose ring-opening and isomerisation for the interconversion of glucose 6-phosphate to fructose 6-phosphate [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity; PDB: 1TZB_A 1X9H_A 1TZC_B 1X9I_A 1WIW_A.
Probab=66.71 E-value=24 Score=34.64 Aligned_cols=100 Identities=15% Similarity=0.158 Sum_probs=61.8
Q ss_pred chhHHHcCCCeEEEEecchhHHHHHHHHHHHHHhcCCcEEEeccccccccC-----CC--CCCCCeEEEEcCCCCcHHHH
Q psy1919 470 DYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRN-----TP--VFRDDVCFFISQSGETADSL 542 (737)
Q Consensus 470 ~~~~~L~~akrI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~~~~-----~~--l~~~dlvI~ISqSGeT~etl 542 (737)
.++..|.+ +..+|+|++....+|.-++..|.+.++.++.+....|+.+.. .+ .....-+|++.-..+...+.
T Consensus 10 ~LA~~L~~-~~Pvi~~~~~~~~vA~R~k~qlnEnAK~~A~~~~lPE~~Hn~i~g~~~~~~~~~~~~~v~l~d~~~~~~~~ 88 (155)
T PF10432_consen 10 RLALELAG-RIPVIYGSPLYAAVARRWKQQLNENAKYPAFAAVLPEANHNEIVGWEGPEPPGGRLRVVLLRDPEDHPRVQ 88 (155)
T ss_dssp HHHHHHTT-SEEEEEECGCGCHHHHHHHHHHHHTT----EEEEETCHHHCHHHCTSS-GGGGTTEEEEEEC-TCCHHHHH
T ss_pred HHHHHHcC-CCcEEEECccchHHHHHHHHHHHHHhCCccchhcchhhhhhhhhhccCCcccccceEEEEEEcCCccccch
Confidence 44555655 677888998888999999999999999998877655554321 11 12233456666666666654
Q ss_pred HHHHH----HHHcCCeEEEEecCCCCcccccc
Q psy1919 543 MALRY----CKARGALIVGVTNTVGSSISRES 570 (737)
Q Consensus 543 ~al~~----AKe~Ga~tIaITn~~~S~La~~A 570 (737)
.-++. ++++|+.++-|....+|+|.+++
T Consensus 89 ~r~~~~~e~~~~~~~~v~~v~~~g~s~l~rl~ 120 (155)
T PF10432_consen 89 RRVEITREIAEDRGVRVIEVEAEGGSPLERLA 120 (155)
T ss_dssp HHHHHHHHHHTTCSSEEEEE--SCCCHHHHHH
T ss_pred hhhHHHHHHHHhcCCcEEEEecCCCCHHHHHH
Confidence 44443 45569999999988888777653
No 166
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=66.43 E-value=39 Score=37.69 Aligned_cols=245 Identities=13% Similarity=0.153 Sum_probs=125.5
Q ss_pred ccccchhHHHcCCCeEEEEecchhHHHHHHHHHHHHHhcCCcEEEeccccccccC----------C--C----CCCCCeE
Q psy1919 466 GGIKDYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRN----------T--P----VFRDDVC 529 (737)
Q Consensus 466 ~~l~~~~~~L~~akrI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~~~~----------~--~----l~~~dlv 529 (737)
++++++++.|.++||..++|-+++..=|+.+.-.+-+..|-- +...+.+.+.+ + . -+..|++
T Consensus 67 eAie~Aa~ILv~aKrPllyg~s~tscEA~~~gielaE~~gav--iD~~asvchGp~~~alqe~g~p~~TlgevKNraDvi 144 (429)
T COG1029 67 EAIEKAAEILVNAKRPLLYGWSSTSCEAQELGIELAEKLGAV--IDSNASVCHGPSVLALQEAGKPTATLGEVKNRADVI 144 (429)
T ss_pred HHHHHHHHHHHhccCceEeccccchHHHHHHHHHHHHHhCcE--ecCCCccccchHHHHHHhcCCcccchhhhcccccEE
Confidence 457788889999999999999999888888877776654322 22112221111 0 0 1235666
Q ss_pred EEEcCCCCcHHHHHHHH-------HHHHcC--CeEEEEecCCCCccccccceEEEcCCCCCccccchhHHHHHHHHHHHH
Q psy1919 530 FFISQSGETADSLMALR-------YCKARG--ALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMF 600 (737)
Q Consensus 530 I~ISqSGeT~etl~al~-------~AKe~G--a~tIaITn~~~S~La~~AD~~L~~~ag~E~~vasTksftsql~~L~lL 600 (737)
|.---.---.-....-+ ..+++| =.|+.+.....+.-|++||..+.+..+.+.- +++. ++
T Consensus 145 VyWGtNP~~shPRhmSRYs~f~RG~~~~rGr~dRtvIvVD~RkT~TAklad~~~qi~p~sDye------lisA-----l~ 213 (429)
T COG1029 145 VYWGTNPMHSHPRHMSRYSVFPRGFFRPRGREDRTVIVVDPRKTATAKLADNHVQIKPNSDYE------LISA-----LR 213 (429)
T ss_pred EEeCCCcccccchhhhhcccccccccccCCcccceEEEEecCcCchhhhhhheEecCCCCcHH------HHHH-----HH
Confidence 64321111111111111 223333 3477777788899999999999887543211 1111 11
Q ss_pred HHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHh-----------------cccHHHHHHHHHHcCCCeEEEEecCCCCHH
Q psy1919 601 ALVMCEDRISLQTRRNEIIKGLKVIHEQIREVL-----------------QMDSEVQQLAKEMYEQKSMLLMGRGGYNYA 663 (737)
Q Consensus 601 al~la~~~~~~~~~~~~~~~~l~~l~~~i~~vl-----------------~~~~~~~~lA~~l~~~~~~~~lG~GG~~y~ 663 (737)
++.-+.......+-+.-=.+.+..+.+.++.+- ..-+.+..+.+.|.+...+.++.- ...|-
T Consensus 214 ~~l~G~~~~~~eev~gvp~~~i~e~a~~mKna~Fg~if~GlGlt~S~gk~rN~e~a~~Lv~~LNe~ak~tli~m-rgH~N 292 (429)
T COG1029 214 AALHGKEPHRSEEVAGVPIEEIEELADMMKNAKFGAIFVGLGLTSSRGKHRNVENAINLVKDLNEYAKFTLIPM-RGHYN 292 (429)
T ss_pred HHhcCCCCCCchhhcCCCHHHHHHHHHHHhcCCcceEEEeeceeecccccccHHHHHHHHHHHhhhceEEEEEe-ccccc
Confidence 111111110000000000122233333333320 011344566666666666666655 44555
Q ss_pred HHHHHHHHHHHhcccccccccccccccccc--c---cc-cCCCeEEEEEcCCch--h-HHHHHHHHHhhh
Q psy1919 664 TCMEGALKIKELTYMHSEGIMAGELKHGPL--A---LI-DNSMPVIMILTRDPV--Y-VKCMNALLQVIF 724 (737)
Q Consensus 664 ~A~EgALKlkE~s~i~Ae~~~a~Ef~HGPi--a---li-d~~t~Vi~l~~~d~~--~-~k~~~~l~ei~a 724 (737)
++=..-.-..|.-|..+-.|.-|.-+|||= . ++ .++.--.+++..|.. + .+....|.||.-
T Consensus 293 v~GFnqv~~~e~GYpf~vdF~rG~prynPgE~s~vdlL~~k~vDAalvi~sDp~ah~P~~~~~~l~eIPv 362 (429)
T COG1029 293 VTGFNEVLSWETGYPFAVDFSRGYPRYNPGEFSAVDLLKRKEVDAALVIASDPGAHFPRDAVEHLAEIPV 362 (429)
T ss_pred cccccchhhhhhCCceeeecccCCcCCCcccccHHHHHhccCCCeEEEEecCccccChHHHHHHhhcCCE
Confidence 555455556677788888888888899982 2 22 344333344444433 2 346677777653
No 167
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=65.45 E-value=31 Score=37.76 Aligned_cols=76 Identities=9% Similarity=0.029 Sum_probs=49.8
Q ss_pred HHcCCCeEEEEecCCCCHHHHHHHHHHHHHhcc-ccccccccccccccccccccCCCeEEEEEcCCchhHHHHHHHHHhh
Q psy1919 645 EMYEQKSMLLMGRGGYNYATCMEGALKIKELTY-MHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVI 723 (737)
Q Consensus 645 ~l~~~~~~~~lG~GG~~y~~A~EgALKlkE~s~-i~Ae~~~a~Ef~HGPialid~~t~Vi~l~~~d~~~~k~~~~l~ei~ 723 (737)
.+...++++++|. |.++.+|.....++....+ +++..+ .++ |-| ..+++++.+|++...+.+ ..++..++..+
T Consensus 17 ~~~~~~~I~i~G~-G~S~~~a~~l~~~l~~~~~~~~v~~~--~d~-~l~-~~~~~~dlvI~iS~SG~t-~e~~~a~~~A~ 90 (308)
T TIGR02128 17 ILKIYDEIVICGM-GGSGIAGRIISILLLEKSFQGPVFVV--KDY-RLP-RFVDGKTLLIAVSYSGNT-EETLSAVEEAK 90 (308)
T ss_pred HHhcCCEEEEEEe-cHHHHHHHHHHHHHHHhCCCccEEEE--cCc-ccc-ccCCCCeEEEEEcCCCCC-HHHHHHHHHHH
Confidence 3334678999999 8899999988888887763 665543 222 333 344677677777656655 33656666666
Q ss_pred hcc
Q psy1919 724 FTI 726 (737)
Q Consensus 724 aR~ 726 (737)
.|+
T Consensus 91 ~~g 93 (308)
T TIGR02128 91 KKG 93 (308)
T ss_pred HcC
Confidence 654
No 168
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=65.38 E-value=72 Score=36.76 Aligned_cols=56 Identities=13% Similarity=0.064 Sum_probs=37.5
Q ss_pred CCCeEEEEcCC-CCc-H-HHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCCCC
Q psy1919 525 RDDVCFFISQS-GET-A-DSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE 581 (737)
Q Consensus 525 ~~dlvI~ISqS-GeT-~-etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E 581 (737)
.-|++|++... -+| . .....+..+|++|+++|.|-. ..|..++.||..|.+..|.+
T Consensus 160 ~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klividp-r~s~ta~~Ad~~l~i~PGtD 218 (477)
T cd02759 160 NPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDP-RLTWLAARADLWLPIRPGTD 218 (477)
T ss_pred cCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEECC-CCChhhHhhCeeeccCCCcH
Confidence 34666666443 232 2 344566678889998887754 56788999999887765543
No 169
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=64.42 E-value=1.2e+02 Score=30.81 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=35.8
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcC
Q psy1919 524 FRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHIN 577 (737)
Q Consensus 524 ~~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ 577 (737)
...|++|++.+..+ ..|+++|...|+|||||++... --+..|+.|+.+
T Consensus 126 ~~Pdlviv~~~~~~----~~ai~Ea~~l~IP~I~i~Dtn~--~~~~i~ypIP~N 173 (193)
T cd01425 126 RLPDLVIVLDPRKE----HQAIREASKLGIPVIAIVDTNC--DPDLIDYPIPAN 173 (193)
T ss_pred cCCCEEEEeCCccc----hHHHHHHHHcCCCEEEEecCCC--CCccceEEeecC
Confidence 35688888887544 5688899999999999998653 335667777654
No 170
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=63.72 E-value=77 Score=38.43 Aligned_cols=56 Identities=18% Similarity=0.232 Sum_probs=36.1
Q ss_pred CCCeEEEEc-CCCCc-HHHHHHHHHHHHc-CCeEEEEecCCCCccccccceEEEcCCCCC
Q psy1919 525 RDDVCFFIS-QSGET-ADSLMALRYCKAR-GALIVGVTNTVGSSISRESHCGIHINAGPE 581 (737)
Q Consensus 525 ~~dlvI~IS-qSGeT-~etl~al~~AKe~-Ga~tIaITn~~~S~La~~AD~~L~~~ag~E 581 (737)
.-|++|++. .--++ +-...-+..||++ |+++|.|-. ..+..++.||..+.+..|.+
T Consensus 169 nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDP-R~t~Ta~~AD~~l~irPGTD 227 (649)
T cd02752 169 NADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDP-RFTRTAAKADLYVPIRSGTD 227 (649)
T ss_pred cCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcC-CCCchhHhcCEeeCcCCChH
Confidence 346666664 32332 2233445667776 998888775 46777889999888876544
No 171
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=63.02 E-value=66 Score=38.50 Aligned_cols=106 Identities=15% Similarity=0.191 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCccccccc-eEEEcCCCCCccccchhHHHHHHHHHHHHHHHHhhhhcchHHHH----
Q psy1919 541 SLMALRYCKARGALIVGVTNTVGSSISRESH-CGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTRR---- 615 (737)
Q Consensus 541 tl~al~~AKe~Ga~tIaITn~~~S~La~~AD-~~L~~~ag~E~~vasTksftsql~~L~lLal~la~~~~~~~~~~---- 615 (737)
+...+..+|++|+++|.|--. .|+.++.|| ..|.+.-|.+ ...+ +.++-..+...... .+..
T Consensus 197 ~~~~~~~ar~~GaklIvIDPr-~t~tA~~add~~l~irPGTD-------~ALa----lam~~~ii~e~~~D-~~Fv~~~t 263 (609)
T cd02769 197 AYSYLKALKDRGIRFISISPL-RDDTAAELGAEWIAIRPGTD-------VALM----LALAHTLVTEGLHD-KAFLARYT 263 (609)
T ss_pred hHHHHHHHHhCCCEEEEEcCC-CCcchhhhcCcEeccCCCcH-------HHHH----HHHHHHHHHcCCcc-HHHHHHHc
Confidence 345677889999999888764 667788776 7787765543 2221 11221122221111 1111
Q ss_pred ---HHHHHHHH-------HHHHHHHHHhc-ccHHHHHHHHHHcCCCeEEEEecCCC
Q psy1919 616 ---NEIIKGLK-------VIHEQIREVLQ-MDSEVQQLAKEMYEQKSMLLMGRGGY 660 (737)
Q Consensus 616 ---~~~~~~l~-------~l~~~i~~vl~-~~~~~~~lA~~l~~~~~~~~lG~GG~ 660 (737)
+++.+.+. ..|+.++++-. ..+.++++|+.+...+.+++.|. |.
T Consensus 264 ~Gfe~~~~~l~~~~dg~~~tpe~aa~itGV~ae~I~~lA~~~a~~~~~i~~g~-g~ 318 (609)
T cd02769 264 VGFDKFLPYLLGESDGVPKTPEWAAAICGIPAETIRELARRFASKRTMIMAGW-SL 318 (609)
T ss_pred cCHHHHHHHhcCCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHhhcCcEEEecc-cc
Confidence 22222221 12344444432 34789999999987666777787 43
No 172
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=62.89 E-value=51 Score=38.66 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=56.5
Q ss_pred HHHHHHHcCCeEEEEecCCCCccccccceEEEcCCCCCccccchhHHHHHHHHHHHHHHHHhhhhcchHHHH-------H
Q psy1919 544 ALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTRR-------N 616 (737)
Q Consensus 544 al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E~~vasTksftsql~~L~lLal~la~~~~~~~~~~-------~ 616 (737)
.++.+|++|+++|.|- -..++.++.||..|.+..|.+ ... ++.++-..+..+... .+.. +
T Consensus 183 ~~~~a~~~G~kliviD-Pr~t~ta~~AD~~l~irPGtD-------~aL----~~a~~~~ii~~~~~D-~~fi~~~t~Gf~ 249 (539)
T cd02762 183 RLKAAKDRGGSLVVID-PRRTETAKLADEHLFVRPGTD-------AWL----LAAMLAVLLAEGLTD-RRFLAEHCDGLD 249 (539)
T ss_pred HHHHHHhCCCEEEEEC-CCCchhhHhcCEeeCcCCCcH-------HHH----HHHHHHHHHHCCCCC-hHHHHHHcCcHH
Confidence 5667889999998775 467788899999998765543 221 122222222222111 1111 2
Q ss_pred HHHHHHHHH-HHHHHHHhc-ccHHHHHHHHHHcCCC-eEEEEecCCC
Q psy1919 617 EIIKGLKVI-HEQIREVLQ-MDSEVQQLAKEMYEQK-SMLLMGRGGY 660 (737)
Q Consensus 617 ~~~~~l~~l-~~~i~~vl~-~~~~~~~lA~~l~~~~-~~~~lG~GG~ 660 (737)
++.+.++.. |+.+.++-. ..+.++++|+.+...+ .+++.|. |.
T Consensus 250 ~~~~~~~~~t~e~~~~~tGv~~~~I~~lA~~~a~~~~~~i~~g~-G~ 295 (539)
T cd02762 250 EVRAALAEFTPEAYAPRCGVPAETIRRLAREFAAAPSAAVYGRL-GV 295 (539)
T ss_pred HHHHHHhcCCHHHHHHHHCcCHHHHHHHHHHHhcCCceEEEECc-cc
Confidence 222222221 333333332 2467899999988765 4566787 44
No 173
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=62.30 E-value=40 Score=36.96 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=36.9
Q ss_pred CCCeEEEEcCC--CCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCCC
Q psy1919 525 RDDVCFFISQS--GETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGP 580 (737)
Q Consensus 525 ~~dlvI~ISqS--GeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~ 580 (737)
.-|++|++-.. .+.+.....++.++++|+++|.|-.. .|+.+..||..+.+..|.
T Consensus 156 ~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~-~s~t~~~ad~~i~i~pgt 212 (374)
T cd00368 156 NADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPR-RTETAAKADEWLPIRPGT 212 (374)
T ss_pred hCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCC-CCcchHhhCEeeCCCCCc
Confidence 34566655422 23334556677788889998888774 567788899988776443
No 174
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=62.22 E-value=33 Score=41.01 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=36.7
Q ss_pred CCeEEEEcCCC-CcH----HHHHHHHHHHHcCCeEEEEecCCCCcccc-ccceEEEcCCCCC
Q psy1919 526 DDVCFFISQSG-ETA----DSLMALRYCKARGALIVGVTNTVGSSISR-ESHCGIHINAGPE 581 (737)
Q Consensus 526 ~dlvI~ISqSG-eT~----etl~al~~AKe~Ga~tIaITn~~~S~La~-~AD~~L~~~ag~E 581 (737)
-+++|++...- +|. .....+..||++|+++|.|-.. .|..++ .||..|.+..|.+
T Consensus 167 a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDPr-~t~tA~~~AD~~i~irPGTD 227 (617)
T cd02770 167 SKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPR-YTDTAVTLADEWIPIRPGTD 227 (617)
T ss_pred CCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECCC-CCccccccCCEEECCCCCcH
Confidence 46677765542 221 1245677889999999888655 566675 8999988765543
No 175
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=61.64 E-value=1.6e+02 Score=36.77 Aligned_cols=55 Identities=9% Similarity=0.052 Sum_probs=34.4
Q ss_pred CCeEEEEcCC-CCcHH-HHHHHHHHH--HcCCeEEEEecCCCCccccccceEEEcCCCCC
Q psy1919 526 DDVCFFISQS-GETAD-SLMALRYCK--ARGALIVGVTNTVGSSISRESHCGIHINAGPE 581 (737)
Q Consensus 526 ~dlvI~ISqS-GeT~e-tl~al~~AK--e~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E 581 (737)
-+++|++... .+|.- ...-+..++ ++|+++|.|- -..++.++.||..|.+..|.+
T Consensus 207 a~~il~~G~Np~~~~p~~~~~i~~a~~~~~G~kiiviD-Pr~t~ta~~ad~~l~irPGtD 265 (830)
T PRK13532 207 ADAFVLWGSNMAEMHPILWSRVTDRRLSNPDVKVAVLS-TFEHRSFELADNGIIFTPQTD 265 (830)
T ss_pred CCEEEEECCCchhcCcHHHHHHHHHHhcCCCCeEEEEC-CCCCchhHhcCeeeccCCCCc
Confidence 4677777544 33321 112222233 4799999885 456888999999998876654
No 176
>CHL00067 rps2 ribosomal protein S2
Probab=60.50 E-value=44 Score=35.09 Aligned_cols=47 Identities=26% Similarity=0.326 Sum_probs=36.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcC
Q psy1919 525 RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHIN 577 (737)
Q Consensus 525 ~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ 577 (737)
..+++|++....+. .|+++|...|+|||||++...+| ...|+.|+.+
T Consensus 161 ~P~~iiv~d~~~~~----~ai~Ea~~l~IPvIaivDTn~~p--~~idypIP~N 207 (230)
T CHL00067 161 LPDIVIIIDQQEEY----TALRECRKLGIPTISILDTNCDP--DLADIPIPAN 207 (230)
T ss_pred CCCEEEEeCCcccH----HHHHHHHHcCCCEEEEEeCCCCc--cccceeeecC
Confidence 35788888887665 68899999999999999976655 4468877654
No 177
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=59.30 E-value=1.4e+02 Score=36.75 Aligned_cols=56 Identities=14% Similarity=0.095 Sum_probs=35.5
Q ss_pred CCCeEEEEcCC-CCc--HHHHHHHHHHH-HcCCeEEEEecCCCCccccccceEEEcCCCCC
Q psy1919 525 RDDVCFFISQS-GET--ADSLMALRYCK-ARGALIVGVTNTVGSSISRESHCGIHINAGPE 581 (737)
Q Consensus 525 ~~dlvI~ISqS-GeT--~etl~al~~AK-e~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E 581 (737)
.-+++|++... -++ ......+..++ ++|+++|.|-. ..|..++.||..|.+..|.+
T Consensus 196 ~ad~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivIDP-r~s~ta~~Ad~~l~i~PGtD 255 (759)
T PRK15488 196 NSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEP-RFSVVASKADEWHAIRPGTD 255 (759)
T ss_pred hCcEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEECC-CCCcchhhCCeeeccCCCcH
Confidence 34666666432 222 11223344555 78999988854 56788999999998765544
No 178
>KOG2446|consensus
Probab=59.01 E-value=16 Score=41.48 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=50.8
Q ss_pred CCCeEEEEecchhHHHHHHHHHHHHHhc--CCcEEEec---cccccccCCCCCC-CCeEEEEcCCCCcHHHHHHHHHHHH
Q psy1919 477 RCRRLMMIGCGTSYHSAVATRQLLEELT--ELPVMVEL---ASDFLDRNTPVFR-DDVCFFISQSGETADSLMALRYCKA 550 (737)
Q Consensus 477 ~akrI~ivG~GsS~~aA~~~~~~l~~~~--gi~v~~~~---ase~~~~~~~l~~-~dlvI~ISqSGeT~etl~al~~AKe 550 (737)
+...|+=+|.|+|..--+...-.|...+ |..+.... +.+.......+++ -+|+|++|-++.|+||+..++.||+
T Consensus 149 ~itdVvnIGIGGSdLGP~mVteALk~y~~~gl~~~FvsNiD~t~ia~~~~kl~pEttLfiVaSKTftT~ETitnaetak~ 228 (546)
T KOG2446|consen 149 KITDVVNIGIGGSDLGPLMVTEALKPYGPGGLEVHFVSNIDGTHIAEVLKKLNPETTLFIVASKTFTTAETITNAETAKE 228 (546)
T ss_pred eeeeEEEecccccccchHHHHHhhccCCCCCceEEEEecCCchhHHHHHhccCccceEEEEEecCcCcHHHHhhHHHHHH
Confidence 4567899999999877666666666553 24444432 2222222233443 4699999999999999999998886
No 179
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=58.15 E-value=77 Score=39.01 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=57.0
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCccccc-cceEEEcCCCCCccccchhHHHHHHHHHHHHHHHHhhhhcchHHHH----
Q psy1919 541 SLMALRYCKARGALIVGVTNTVGSSISRE-SHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTRR---- 615 (737)
Q Consensus 541 tl~al~~AKe~Ga~tIaITn~~~S~La~~-AD~~L~~~ag~E~~vasTksftsql~~L~lLal~la~~~~~~~~~~---- 615 (737)
....++.||++|+++|.|--. -|+.|+. +|..|.+..|.+. .. ++.++-..+...... .+..
T Consensus 193 ~~~~~~~a~~~G~klIvIDPr-~t~tA~~aaD~~l~irPGTD~-------AL----~lam~~~ii~e~l~D-~~fi~~~t 259 (770)
T TIGR00509 193 GYEYLERLKAKGKRVISIDPV-RTETAEFFGAEWIPPNPQTDV-------AL----MLGLAHTLVTEGLYD-KDFLAKYT 259 (770)
T ss_pred hHHHHHHHHHcCCEEEEEcCC-CCcchhhccCeEeCcCCCcHH-------HH----HHHHHHHHHHccccc-HHHHHHHc
Confidence 346677789999998887654 5666776 5888877655432 21 111221222221111 1111
Q ss_pred ---HHHHHHHH-------HHHHHHHHHhc-ccHHHHHHHHHHcCCCeEEEEec
Q psy1919 616 ---NEIIKGLK-------VIHEQIREVLQ-MDSEVQQLAKEMYEQKSMLLMGR 657 (737)
Q Consensus 616 ---~~~~~~l~-------~l~~~i~~vl~-~~~~~~~lA~~l~~~~~~~~lG~ 657 (737)
+++.+.+. ..|+.++++-. ..+.++++|+.|...+..++.|.
T Consensus 260 ~gfe~~~~~l~~~~~g~~~tpe~aa~itGV~a~~I~~lA~~~a~~~~~i~~g~ 312 (770)
T TIGR00509 260 SGFEKFLPYLLGETDGTPKTAEWASKITGVPAETIKELARLFASKRTMLAAGW 312 (770)
T ss_pred ccHHHHHHHhcCCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHhccceeeccc
Confidence 22222221 13444444432 34688999999987766677777
No 180
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=57.59 E-value=74 Score=37.99 Aligned_cols=55 Identities=16% Similarity=0.182 Sum_probs=35.9
Q ss_pred CCeEEEEcCC-CCcH---------HHHHHHHHHHHcCCeEEEEecCCCCcccc-ccceEEEcCCCCC
Q psy1919 526 DDVCFFISQS-GETA---------DSLMALRYCKARGALIVGVTNTVGSSISR-ESHCGIHINAGPE 581 (737)
Q Consensus 526 ~dlvI~ISqS-GeT~---------etl~al~~AKe~Ga~tIaITn~~~S~La~-~AD~~L~~~ag~E 581 (737)
-+++|++... .+|. .....+..+|++|+++|.|-. ..|..+. .||..|.+..|.+
T Consensus 170 ad~il~wG~N~~~~~~~~~~~~~~~~~~~~~~a~~~GakiivIDP-r~s~ta~~~AD~~l~irPGtD 235 (609)
T cd02751 170 SDLVVLFGANPLKTRQGGGGGPDHGSYYYLKQAKDAGVRFICIDP-RYTDTAAVLAAEWIPIRPGTD 235 (609)
T ss_pred CCEEEEECCCHHHhcCCCCCccCcchHHHHHHHHHCCCeEEEECC-CCCccccccCCEEECCCCCcH
Confidence 4667766443 2232 123567778899999888854 4566676 7999887765543
No 181
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=55.81 E-value=91 Score=36.96 Aligned_cols=56 Identities=18% Similarity=0.159 Sum_probs=39.2
Q ss_pred CCCeEEEEcCC-CCc-HHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCCCC
Q psy1919 525 RDDVCFFISQS-GET-ADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE 581 (737)
Q Consensus 525 ~~dlvI~ISqS-GeT-~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E 581 (737)
.-+++|++... .+| .-....+..+|++|+++|.|- -..|+.++.||..|.+..|.+
T Consensus 159 ~ad~il~~G~Np~~s~~~~~~~~~~a~~~GakliviD-Pr~s~ta~~Ad~~l~irPGTD 216 (567)
T cd02765 159 NAKTIIIWGSNILETQFQDAEFFLDARENGAKIVVID-PVYSTTAAKADQWVPIRPGTD 216 (567)
T ss_pred cCcEEEEECCChHHccchhHHHHHHHHHcCCeEEEEC-CCCCcchhhcCEEeccCCCch
Confidence 34666666554 333 234566677889999998885 457888999999988775544
No 182
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=54.37 E-value=67 Score=33.61 Aligned_cols=47 Identities=21% Similarity=0.218 Sum_probs=35.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcC
Q psy1919 525 RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHIN 577 (737)
Q Consensus 525 ~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ 577 (737)
..|++|++.+.-+. .|++.|...|+|||||++....| ...|+.|+.+
T Consensus 155 ~Pd~vii~d~~~~~----~ai~Ea~~l~IP~I~ivDTn~~p--~~idypIP~N 201 (225)
T TIGR01011 155 LPDLLFVIDPVKEK----IAVAEARKLGIPVVAIVDTNCDP--DLVDYPIPGN 201 (225)
T ss_pred CCCEEEEeCCCccH----HHHHHHHHcCCCEEEEeeCCCCC--cccceeeecC
Confidence 35788888886543 47888999999999999875554 4678877654
No 183
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=54.29 E-value=16 Score=33.83 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=37.6
Q ss_pred EEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCc--cccccceEEEcCC
Q psy1919 530 FFISQSGETADSLMALRYCKARGALIVGVTNTVGSS--ISRESHCGIHINA 578 (737)
Q Consensus 530 I~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~--La~~AD~~L~~~a 578 (737)
|+|-.+|+. .+++++.+|+.|..+|+|-+++++. -.+.||..+..+.
T Consensus 5 vLIanrGei--a~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~ 53 (110)
T PF00289_consen 5 VLIANRGEI--AVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPP 53 (110)
T ss_dssp EEESS-HHH--HHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEES
T ss_pred EEEECCCHH--HHHHHHHHHHhCCcceeccCchhcccccccccccceecCc
Confidence 456667766 8899999999999999999988854 4578999888763
No 184
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=53.88 E-value=59 Score=34.80 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=35.8
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcC
Q psy1919 525 RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHIN 577 (737)
Q Consensus 525 ~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ 577 (737)
..|++|++.+.-+. .|++.|...|+|||||++....| ...|+.|+.+
T Consensus 157 ~Pd~iii~d~~~~~----~ai~Ea~kl~IPiIaivDTn~dp--~~IdypIP~N 203 (258)
T PRK05299 157 LPDALFVVDPNKEH----IAVKEARKLGIPVVAIVDTNCDP--DGVDYPIPGN 203 (258)
T ss_pred CCCEEEEeCCCccH----HHHHHHHHhCCCEEEEeeCCCCC--cccceeeecC
Confidence 45888888886554 58889999999999999875543 4677777654
No 185
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=52.00 E-value=61 Score=36.27 Aligned_cols=31 Identities=13% Similarity=0.276 Sum_probs=23.5
Q ss_pred HcCCeEEEEecCCCCccccccceEEEcCCCCC
Q psy1919 550 ARGALIVGVTNTVGSSISRESHCGIHINAGPE 581 (737)
Q Consensus 550 e~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E 581 (737)
++|++++.| +...|..++.||..|.+..|.+
T Consensus 166 ~~g~kli~i-dp~~t~ta~~Ad~~l~i~pgtd 196 (415)
T cd02761 166 REDRTLIVV-DPRKSDTAKLADIHLQIDPGSD 196 (415)
T ss_pred CCCCEEEEE-cCCCcchhhhcceEEecCCCCc
Confidence 578887776 5567788999999888775544
No 186
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=51.52 E-value=75 Score=33.80 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=22.1
Q ss_pred HHHHHHHHHHcCCCeEEEEecCCCCHHHH
Q psy1919 637 SEVQQLAKEMYEQKSMLLMGRGGYNYATC 665 (737)
Q Consensus 637 ~~~~~lA~~l~~~~~~~~lG~GG~~y~~A 665 (737)
..++.+++.+.+..+++++|. |.+--+|
T Consensus 37 ~av~~~~~~l~~ggrl~~~Ga-GtSg~la 64 (257)
T cd05007 37 RAVDAAAERLRAGGRLIYVGA-GTSGRLG 64 (257)
T ss_pred HHHHHHHHHHHcCCEEEEEcC-cHHHHHH
Confidence 446677888889999999999 7666555
No 187
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=50.63 E-value=37 Score=34.90 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=41.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEE
Q psy1919 525 RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIH 575 (737)
Q Consensus 525 ~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~ 575 (737)
+-|++|+|--|+...-.-..++.++++|+++| +.|...+++...+|.+|.
T Consensus 155 ~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi-~iN~~~~~~d~~~d~~~~ 204 (206)
T cd01410 155 RADLFLCLGTSLQVTPAANLPLKAARAGGRLV-IVNLQPTPKDKLADLVIH 204 (206)
T ss_pred cCCEEEEECcCceehhHHHHHHHHHhcCCeEE-EECCCCCCCCccccEEEe
Confidence 45899999999999888888899999998877 555667888888888764
No 188
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=49.50 E-value=72 Score=35.67 Aligned_cols=31 Identities=10% Similarity=0.263 Sum_probs=23.2
Q ss_pred HcCCeEEEEecCCCCccccccceEEEcCCCCC
Q psy1919 550 ARGALIVGVTNTVGSSISRESHCGIHINAGPE 581 (737)
Q Consensus 550 e~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E 581 (737)
++|++++.| +...|+.++.||..|.+..|.+
T Consensus 172 ~~g~~livi-dp~~s~t~~~ad~~l~i~pgtd 202 (421)
T TIGR03129 172 REDRTVIVV-DPRKTDTAKLADYHLQIKPGSD 202 (421)
T ss_pred cCCCEEEEE-CCCCCCcchhhcceeccCCCCc
Confidence 678877777 5567788899999887776544
No 189
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=49.10 E-value=77 Score=31.57 Aligned_cols=88 Identities=15% Similarity=0.225 Sum_probs=51.1
Q ss_pred chhHHHcCCCe-EEEEecchh-HHHHHHHHHHHHHhcCCcEEEeccc-------cccccC---------------CCC--
Q psy1919 470 DYIPEIRRCRR-LMMIGCGTS-YHSAVATRQLLEELTELPVMVELAS-------DFLDRN---------------TPV-- 523 (737)
Q Consensus 470 ~~~~~L~~akr-I~ivG~GsS-~~aA~~~~~~l~~~~gi~v~~~~as-------e~~~~~---------------~~l-- 523 (737)
.+++.|.+++| ++++|.|.. ..++..+..+.+++ ++|+...... .....+ ..+
T Consensus 19 ~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEkl-giPVvtT~~~~~~~~~kgv~~~~~~lg~~g~~~~~p~~e~~~g 97 (162)
T TIGR00315 19 LVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKF-DLPVVATADTYRALIEAGIESEEMNLHEITQFLADPSWEGFDG 97 (162)
T ss_pred HHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHH-CCCEEEcCccccccccCCeecCCCCHHHHHHhccCchhhhccC
Confidence 34555655555 666788875 44555666666665 7887654321 010000 012
Q ss_pred -CCCCeEEEEcCC-CCcHHHHHHHHHHHHcCCeEEEEec
Q psy1919 524 -FRDDVCFFISQS-GETADSLMALRYCKARGALIVGVTN 560 (737)
Q Consensus 524 -~~~dlvI~ISqS-GeT~etl~al~~AKe~Ga~tIaITn 560 (737)
.+-|++|++-.. =-+.-++.+++... ..+||+|++
T Consensus 98 ~g~~DlvlfvG~~~y~~~~~ls~lk~f~--~~~~i~l~~ 134 (162)
T TIGR00315 98 EGNYDLVLFLGIIYYYLSQMLSSLKHFS--HIVTIAIDK 134 (162)
T ss_pred CCCcCEEEEeCCcchHHHHHHHHHHhhc--CcEEEEecC
Confidence 455777766333 34455788888665 589999985
No 190
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=47.98 E-value=3.6e+02 Score=29.82 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCC-C-cHHHHHHHHHHHH-cCCeEEEEecCCCCccccccceEEEcCC
Q psy1919 525 RDDVCFFISQSG-E-TADSLMALRYCKA-RGALIVGVTNTVGSSISRESHCGIHINA 578 (737)
Q Consensus 525 ~~dlvI~ISqSG-e-T~etl~al~~AKe-~Ga~tIaITn~~~S~La~~AD~~L~~~a 578 (737)
.-|++|++...- + .+-....++.+++ +|+++|.|-.. .+++ .||..+.+..
T Consensus 148 ~ad~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~-~t~~--~ad~~~~~~p 201 (386)
T cd02768 148 EADAVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPK-DTDL--IADLTYPVSP 201 (386)
T ss_pred hCCEEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCC-cccc--ccceEEEcCC
Confidence 356777765443 2 2333445556644 49998877764 4444 7898887654
No 191
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=47.82 E-value=79 Score=38.52 Aligned_cols=56 Identities=16% Similarity=0.247 Sum_probs=36.6
Q ss_pred CCCeEEEEcCCCC--cHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCCCC
Q psy1919 525 RDDVCFFISQSGE--TADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE 581 (737)
Q Consensus 525 ~~dlvI~ISqSGe--T~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E 581 (737)
.-+++|++..... +.-....++.+|++|+++|.|- -..|..++.||..|.+..|.+
T Consensus 155 ~Ad~Ivl~G~n~~~~~~p~~~~i~~ak~~GaKlIvID-Pr~t~ta~~AD~wl~irPGTD 212 (679)
T cd02763 155 HTKYFMMIGVAEDHHSNPFKIGIQKLKRRGGKFVAVN-PVRTGYAAIADEWVPIKPGTD 212 (679)
T ss_pred hCCEEEEECCCCcccCchHHHHHHHHHhCCCcEEEEc-CcCCcchHhhCeecCcCCCcH
Confidence 3466666653221 1113345677888999998884 556778999999887765543
No 192
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=46.82 E-value=36 Score=35.32 Aligned_cols=50 Identities=16% Similarity=0.132 Sum_probs=41.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEE
Q psy1919 525 RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIH 575 (737)
Q Consensus 525 ~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~ 575 (737)
+-|++|++--|+...-.-..++.|+++|+++| +.|...+++...+|..|.
T Consensus 171 ~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i-~iN~~~~~~~~~~~~~i~ 220 (222)
T cd01413 171 EADLFIVLGSSLVVYPANLLPLIAKENGAKLV-IVNADETPFDYIADLVIQ 220 (222)
T ss_pred cCCEEEEEccCCEeccHhHHHHHHHHcCCeEE-EEcCCCCCCCcceeEEEe
Confidence 35899999999998888888899999999887 556666788888887663
No 193
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=46.67 E-value=89 Score=32.25 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=33.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCC
Q psy1919 526 DDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINA 578 (737)
Q Consensus 526 ~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~a 578 (737)
.|++|++.+.-+ ..|+++|+..|.|||+|++....| +..|+.|+.+.
T Consensus 144 P~~vii~~~~~~----~~~i~Ea~~l~IP~i~i~Dtn~~~--~~i~ypIp~N~ 190 (211)
T PF00318_consen 144 PDLVIILDPNKN----KNAIREANKLNIPTIAIVDTNCNP--SLIDYPIPAND 190 (211)
T ss_dssp BSEEEESSTTTT----HHHHHHHHHTTS-EEEEESTTS-G--TTSSEEEES-S
T ss_pred CcEEEEeccccc----chhHHHHHhcCceEEEeecCCCCc--cccceEeecCC
Confidence 578888877554 468899999999999999864443 55888887653
No 194
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=46.48 E-value=2e+02 Score=33.68 Aligned_cols=56 Identities=16% Similarity=0.122 Sum_probs=36.0
Q ss_pred CCCeEEEEcCCC-Cc-HHHH--HHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCCCC
Q psy1919 525 RDDVCFFISQSG-ET-ADSL--MALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE 581 (737)
Q Consensus 525 ~~dlvI~ISqSG-eT-~etl--~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E 581 (737)
.-+++|+++..- +| ..+. .-+..++++|+++|.|-. ..|..+..||..|.+..|.+
T Consensus 162 ~a~~Il~~G~n~~~t~~~~~~~~~~~~a~~~gakliviDP-r~s~ta~~AD~~l~i~PGtD 221 (523)
T cd02757 162 NAKYILFFGADPLESNRQNPHAQRIWGGKMDQAKVVVVDP-RLSNTAAKADEWLPIKPGED 221 (523)
T ss_pred cCcEEEEECCChHHhCCCcHHHHHHHHHHHCCCEEEEECC-CCChhhHhcCEeeCCCCCcH
Confidence 446777776443 22 1121 334456789999988855 56777888999988765544
No 195
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=45.41 E-value=12 Score=43.52 Aligned_cols=42 Identities=17% Similarity=0.140 Sum_probs=35.7
Q ss_pred ccc--cccccceEEeccCcccccccc-eEEEeecCcccccccCce
Q psy1919 121 QPL--EDKQVEYFFASDASAVIEHTN-RVIFLERFDRGNCNCQSL 162 (737)
Q Consensus 121 ~~~--~~~~~~~~~~s~~~~~~~~~~-~~i~l~~~~~~~~~~~~~ 162 (737)
+|| |.++++++|||++.||..++. .+..|+.|++..++.+.+
T Consensus 196 RPL~~G~~~~~~~~ASE~~Al~~~~~~~i~~l~PGeiv~i~~~g~ 240 (474)
T PRK06388 196 RPLVLGKNFDGYIIASESCAIDALSGTTIKNVEPGEVVEVFDNGY 240 (474)
T ss_pred CceEEEecCCEEEEEEChHHHHhccCcEEEEeCCCEEEEEECCce
Confidence 688 777778999999999999888 466799999888887776
No 196
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=45.15 E-value=1.7e+02 Score=34.30 Aligned_cols=55 Identities=15% Similarity=0.101 Sum_probs=32.8
Q ss_pred CCeEEEEcCC-CCcH----HHHHHHHHHHHcCC-----eEEEEecCCCCccccccceEEEcCCCCC
Q psy1919 526 DDVCFFISQS-GETA----DSLMALRYCKARGA-----LIVGVTNTVGSSISRESHCGIHINAGPE 581 (737)
Q Consensus 526 ~dlvI~ISqS-GeT~----etl~al~~AKe~Ga-----~tIaITn~~~S~La~~AD~~L~~~ag~E 581 (737)
-+++|++... -+|. .....+..+|++|+ ++|.|- ...|..+..||..|.+..|.+
T Consensus 197 a~~il~~G~N~~~~~~~~~~~~~~~~~ar~~g~~~~g~kliviD-Pr~s~ta~~Ad~~l~irPGtD 261 (524)
T cd02764 197 AEVIVSIDADFLGSWISAIRHRHDFAAKRRLGAEEPMSRLVAAE-SVYTLTGANADVRLAIRPSQE 261 (524)
T ss_pred CcEEEEECCcccccCcccchhHHHHHHhccccCCCCceeEEEEe-cCCCchhhhhcceeccCcccH
Confidence 4566666443 2331 12344445666554 777775 567788889999887765433
No 197
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=44.48 E-value=2.3e+02 Score=32.06 Aligned_cols=73 Identities=21% Similarity=0.217 Sum_probs=38.7
Q ss_pred cCCcEEEeccccccccCCCCCCCC-eEEEEcCCC---CcHHHHHHHHHHHHcC-CeEEEEecCCCC-----ccccccceE
Q psy1919 504 TELPVMVELASDFLDRNTPVFRDD-VCFFISQSG---ETADSLMALRYCKARG-ALIVGVTNTVGS-----SISRESHCG 573 (737)
Q Consensus 504 ~gi~v~~~~ase~~~~~~~l~~~d-lvI~ISqSG---eT~etl~al~~AKe~G-a~tIaITn~~~S-----~La~~AD~~ 573 (737)
.|+.+......+...-...+.+++ ++++=|-+- +..|+-...+.||++| +. +.|=|+-.+ ||.--||++
T Consensus 118 ~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~-~vVDnT~atp~~~~pL~~GaDiv 196 (386)
T PF01053_consen 118 FGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDIL-VVVDNTFATPYNQNPLELGADIV 196 (386)
T ss_dssp TTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-E-EEEECTTTHTTTC-GGGGT-SEE
T ss_pred cCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCce-EEeeccccceeeeccCcCCceEE
Confidence 367776665433311111233344 455555554 6688888999999999 54 344444334 455568998
Q ss_pred EEcC
Q psy1919 574 IHIN 577 (737)
Q Consensus 574 L~~~ 577 (737)
++-.
T Consensus 197 v~S~ 200 (386)
T PF01053_consen 197 VHSA 200 (386)
T ss_dssp EEET
T ss_pred Eeec
Confidence 8653
No 198
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=43.37 E-value=72 Score=33.96 Aligned_cols=45 Identities=24% Similarity=0.254 Sum_probs=33.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcC
Q psy1919 527 DVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHIN 577 (737)
Q Consensus 527 dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ 577 (737)
|++|++-..-+ -.|+..|++.|+|||||+++..+| ...|+.|+.+
T Consensus 158 d~l~ViDp~~e----~iAv~EA~klgIPVvAlvDTn~dp--d~VD~~IP~N 202 (252)
T COG0052 158 DVLFVIDPRKE----KIAVKEANKLGIPVVALVDTNCDP--DGVDYVIPGN 202 (252)
T ss_pred CEEEEeCCcHh----HHHHHHHHHcCCCEEEEecCCCCC--ccCceeecCC
Confidence 56666644333 357889999999999999976665 6788888654
No 199
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=42.96 E-value=2.7e+02 Score=30.33 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcCCCeEEEEecCCCCHHHH
Q psy1919 637 SEVQQLAKEMYEQKSMLLMGRGGYNYATC 665 (737)
Q Consensus 637 ~~~~~lA~~l~~~~~~~~lG~GG~~y~~A 665 (737)
..++.+++.+.+..+++++|. |.+..+|
T Consensus 46 ~a~~~~~~~l~~ggrl~~~Ga-G~Sg~la 73 (296)
T PRK12570 46 QAVDKIVAAFKKGGRLIYMGA-GTSGRLG 73 (296)
T ss_pred HHHHHHHHHHHcCCeEEEECC-chhHHHH
Confidence 345677888888999999999 7776663
No 200
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=42.75 E-value=66 Score=31.43 Aligned_cols=75 Identities=11% Similarity=0.049 Sum_probs=39.2
Q ss_pred HHHHHHHHHc---CCCeEEEEecCCCCHH---HHHHHHHHHHH-hccccccccccccc-cccccccccCCCeEEEEEcCC
Q psy1919 638 EVQQLAKEMY---EQKSMLLMGRGGYNYA---TCMEGALKIKE-LTYMHSEGIMAGEL-KHGPLALIDNSMPVIMILTRD 709 (737)
Q Consensus 638 ~~~~lA~~l~---~~~~~~~lG~GG~~y~---~A~EgALKlkE-~s~i~Ae~~~a~Ef-~HGPialid~~t~Vi~l~~~d 709 (737)
.++++++++. ..++++++|- |-++. ++.++..++.= --.++.....-.++ ...+-.+-.+++.||++--.+
T Consensus 6 ~i~~~~~~i~~~~~~~~iv~~Gi-GGS~lg~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~~tlvi~iSkSG 84 (158)
T cd05015 6 RIKEFAEKVRSGKKITDVVVIGI-GGSDLGPRAVYEALKPYFKGGLRLHFVSNVDPDDLAELLKKLDPETTLFIVISKSG 84 (158)
T ss_pred HHHHHHHHHhcCCCCCEEEEEec-CccHHHHHHHHHHHHhhccCCceEEEEeCCCHHHHHHHHHhCCcccEEEEEEECCc
Confidence 3445555554 3689999999 65666 66666665421 01122322222333 223333333666666665556
Q ss_pred chhH
Q psy1919 710 PVYV 713 (737)
Q Consensus 710 ~~~~ 713 (737)
.+.|
T Consensus 85 ~T~E 88 (158)
T cd05015 85 TTLE 88 (158)
T ss_pred CCHH
Confidence 5543
No 201
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=42.68 E-value=1.1e+02 Score=33.83 Aligned_cols=47 Identities=17% Similarity=0.190 Sum_probs=35.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcC
Q psy1919 525 RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHIN 577 (737)
Q Consensus 525 ~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ 577 (737)
..|++|++....+ ..|++.|++.|++||+|++....| ...|+.|+.+
T Consensus 152 ~Pd~viv~d~~~e----~~AI~EA~kl~IPvIaivDTn~dp--~~IdypIP~N 198 (326)
T PRK12311 152 LPDLLFVIDTNKE----DIAIQEAQRLGIPVAAIVDTNCDP--DGITYPVPGN 198 (326)
T ss_pred CCCEEEEeCCccc----hHHHHHHHHcCCCEEEEeeCCCCc--cccceeecCC
Confidence 4578888887755 468889999999999999865443 4577777554
No 202
>cd05637 SIS_PGI_PMI_2 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the second SIS domain.
Probab=41.99 E-value=1.4e+02 Score=28.46 Aligned_cols=97 Identities=12% Similarity=0.092 Sum_probs=56.9
Q ss_pred hHHHcCCCeEEEEecchhHHHHHHHHHHHHHhcCCcEEEeccccccccCCC--CCCCC---eEEEEcCCCCc--HHHHHH
Q psy1919 472 IPEIRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTP--VFRDD---VCFFISQSGET--ADSLMA 544 (737)
Q Consensus 472 ~~~L~~akrI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~~~~~~--l~~~d---lvI~ISqSGeT--~etl~a 544 (737)
+..|.+ +.-+|+|.+....+|.-++..|.+.++.++......|..+.... -.+.+ .++...-..+. ......
T Consensus 7 A~~l~g-~~Pvi~g~~~~~~~A~R~k~ql~enAK~~A~~~~lPE~~hn~i~~~~~~~~~~~~~~~~~d~~~~~~~~~r~~ 85 (132)
T cd05637 7 ALELAG-RIPIIYGSTLYEPAAYRFKNQLNENAKYPAFYEELPEANHNEIVGWESPLSALPLAVILSDEDDHVRIKLRIV 85 (132)
T ss_pred HHHhcC-CCCEEEeccchHHHHHHHHHHHHHHhCCCcccccCchhcccccccccCcccccceEEEecCcccccchhHHHH
Confidence 334433 56788888866677999999999999999877655565443211 11112 23222222222 112223
Q ss_pred HHHHHHcCCeEEEEecCCCCccccc
Q psy1919 545 LRYCKARGALIVGVTNTVGSSISRE 569 (737)
Q Consensus 545 l~~AKe~Ga~tIaITn~~~S~La~~ 569 (737)
+..++++|..+..+....+|+|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~g~s~l~rl 110 (132)
T cd05637 86 ITKFEEGGIPYEVIESVGASPLARL 110 (132)
T ss_pred HHHHHhcCCCeEEEecCCCCHHHHH
Confidence 3337788888888887766666654
No 203
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=39.06 E-value=54 Score=35.32 Aligned_cols=53 Identities=15% Similarity=0.112 Sum_probs=41.5
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccc-cccceEEEcC
Q psy1919 524 FRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSIS-RESHCGIHIN 577 (737)
Q Consensus 524 ~~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La-~~AD~~L~~~ 577 (737)
.+-|++|+|--|+...-.-...+.|+++|+++|.|.. ..+++. +.+|+.|.-.
T Consensus 198 ~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~-~~t~~~~~~~d~~i~~~ 251 (271)
T PTZ00409 198 DKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNI-SKTYITNRISDYHVRAK 251 (271)
T ss_pred HcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECC-CCCCCCCccccEEEECc
Confidence 3468999999999988888888999999999886654 456776 5788877543
No 204
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=38.62 E-value=4.2e+02 Score=26.79 Aligned_cols=87 Identities=17% Similarity=0.103 Sum_probs=58.0
Q ss_pred HHHHHHHHcCCCeEEEEecCCCCHHHHHHHHHHH-----HHhccccccccccc---------cc------cccccccccC
Q psy1919 639 VQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKI-----KELTYMHSEGIMAG---------EL------KHGPLALIDN 698 (737)
Q Consensus 639 ~~~lA~~l~~~~~~~~lG~GG~~y~~A~EgALKl-----kE~s~i~Ae~~~a~---------Ef------~HGPialid~ 698 (737)
...+++.|.+...++..|- |-+++-|+-.|-.| +|-.-+||.+..+. +| .+.--++-.+
T Consensus 31 a~~i~~~l~~G~Kvl~cGN-GgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~yd~vFsRqveA~g~~ 109 (176)
T COG0279 31 AQLLVQSLLNGNKVLACGN-GGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYGYDEVFSRQVEALGQP 109 (176)
T ss_pred HHHHHHHHHcCCEEEEECC-CcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhccccHHHHHHHHHHhcCCC
Confidence 4567888889999999999 88999988666554 34445666665521 11 1222234457
Q ss_pred CCeEEEEEcCCchhHHHHHHHHHhhhccc
Q psy1919 699 SMPVIMILTRDPVYVKCMNALLQVIFTIF 727 (737)
Q Consensus 699 ~t~Vi~l~~~d~~~~k~~~~l~ei~aR~~ 727 (737)
+..++.|.+.+.. .-++..++.-+.++.
T Consensus 110 GDvLigISTSGNS-~nVl~Ai~~Ak~~gm 137 (176)
T COG0279 110 GDVLIGISTSGNS-KNVLKAIEAAKEKGM 137 (176)
T ss_pred CCEEEEEeCCCCC-HHHHHHHHHHHHcCC
Confidence 7788888887754 447777777777653
No 205
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=38.17 E-value=6.2e+02 Score=31.61 Aligned_cols=56 Identities=11% Similarity=0.020 Sum_probs=33.8
Q ss_pred CCCeEEEEcCCC-CcH-HHHHHHHHHH--HcCCeEEEEecCCCCccccccceEEEcCCCCC
Q psy1919 525 RDDVCFFISQSG-ETA-DSLMALRYCK--ARGALIVGVTNTVGSSISRESHCGIHINAGPE 581 (737)
Q Consensus 525 ~~dlvI~ISqSG-eT~-etl~al~~AK--e~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E 581 (737)
.-+++|++...- +|. -...-+..++ ++|+++|.|- -..++.+..||..|.+..|.+
T Consensus 206 ~ad~il~~G~Np~~~~p~~~~~i~~a~~~~~GakliviD-Pr~t~ta~~Ad~~l~irPGTD 265 (830)
T TIGR01706 206 AADAFVLWGSNMAEMHPILWTRVTDRRLSHPKVKVVVLS-TFTHRSFDLADIGIIFKPQTD 265 (830)
T ss_pred hCCEEEEEcCCcchhCCHHHHHHHHHHhccCCCEEEEEC-CCCCchhHHhCeeeccCCCCH
Confidence 346777775543 331 1112232333 4699999775 456678889999887765544
No 206
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=37.88 E-value=59 Score=34.69 Aligned_cols=53 Identities=11% Similarity=0.010 Sum_probs=43.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCC
Q psy1919 525 RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINA 578 (737)
Q Consensus 525 ~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~a 578 (737)
+-|++|+|--|+...-.-..++.|+++|+++|-| |...+++.+.+|..|.-.+
T Consensus 204 ~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiI-N~~~t~~d~~a~~~i~~~~ 256 (260)
T cd01409 204 EADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIV-NIGPTRADHLATLKVDARC 256 (260)
T ss_pred cCCEEEEeCcCceecchhhHHHHHHHCCCcEEEE-cCCCCCCCccccEEEeCCh
Confidence 3589999999999888888889999999987655 5567889999998876544
No 207
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=37.88 E-value=45 Score=35.23 Aligned_cols=53 Identities=8% Similarity=0.052 Sum_probs=42.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCC
Q psy1919 525 RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINA 578 (737)
Q Consensus 525 ~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~a 578 (737)
+-|++|+|--|....-.-..+..++++|++++ +.|...+++...+|+.+...+
T Consensus 178 ~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i-~iN~~~t~~d~~~~~~i~~~~ 230 (244)
T PRK14138 178 KASLMIVMGSSLVVYPAAELPLITVRSGGKLV-IVNLGETPLDDIATLKYNMDV 230 (244)
T ss_pred cCCEEEEeCcCCeeecHhHHHHHHHHcCCeEE-EEcCCCCCCCcceeEEEeCCH
Confidence 45899999999998888888889999999987 555567788888998776543
No 208
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=36.95 E-value=20 Score=41.36 Aligned_cols=43 Identities=19% Similarity=0.127 Sum_probs=35.2
Q ss_pred ccc--cccccceEEeccCcccccccceEEEeecCcccccccCceee
Q psy1919 121 QPL--EDKQVEYFFASDASAVIEHTNRVIFLERFDRGNCNCQSLTV 164 (737)
Q Consensus 121 ~~~--~~~~~~~~~~s~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~ 164 (737)
+|| |.++ .++|||++.||..++..+..++.|++..++.+.+..
T Consensus 179 rPL~~G~~~-~~~~ASE~~Al~~~~~~v~~l~PGeiv~i~~~g~~~ 223 (442)
T PRK08341 179 RPLSYGEGD-GHYFASEDSALRMFVNEIRDVFPGEVFVVSEGEVES 223 (442)
T ss_pred eEEEEEECC-EEEEEeCcHHHHhhCCeEEEeCCCEEEEEECCceEE
Confidence 777 5443 389999999999999889999999988888777643
No 209
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=35.82 E-value=4e+02 Score=30.52 Aligned_cols=39 Identities=10% Similarity=0.178 Sum_probs=24.8
Q ss_pred HHHHHHHHHHcCCC-eEEEEecCCCCHHHHHHHHHHHHHhc
Q psy1919 637 SEVQQLAKEMYEQK-SMLLMGRGGYNYATCMEGALKIKELT 676 (737)
Q Consensus 637 ~~~~~lA~~l~~~~-~~~~lG~GG~~y~~A~EgALKlkE~s 676 (737)
+.++++|+.+...+ .+++.|. |.+-.-+.++...|.-+.
T Consensus 253 ~~i~~lA~~l~~a~~~~i~~g~-g~~~~~~~~al~~L~~~~ 292 (472)
T cd02771 253 EKAARIAARLTGAKKPLIVSGT-LSGSLELIKAAANLAKAL 292 (472)
T ss_pred HHHHHHHHHHhcCCCcEEEECC-CcCcHHHHHHHHHHHHHh
Confidence 56788888887654 5778888 764334445555544443
No 210
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=35.24 E-value=4.5e+02 Score=32.57 Aligned_cols=55 Identities=13% Similarity=0.007 Sum_probs=36.5
Q ss_pred CCeEEEEcCCC-CcH--HHHHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCCCC
Q psy1919 526 DDVCFFISQSG-ETA--DSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE 581 (737)
Q Consensus 526 ~dlvI~ISqSG-eT~--etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E 581 (737)
-+++|++-..- .+. -....+..+|++|+++|.|- -..|..++.||..|.+..|.+
T Consensus 174 ad~Il~~G~Np~~s~~~~~~~~~~~ar~~GaKlIvVD-Pr~t~ta~~AD~wlpirPGTD 231 (760)
T cd02760 174 ANYVISFGSNVEASGGPCAVTRHADARVRGYKRVQVE-PHLSVTGACSAEWVPIRPKTD 231 (760)
T ss_pred CCEEEEECCCchHhcCcHHHHHHHHHHHcCCeEEEEc-CCCCcchhhcCeEeCcCCCcH
Confidence 45666663332 221 13455667888999988885 456888899999987765544
No 211
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=34.91 E-value=2e+02 Score=36.00 Aligned_cols=38 Identities=13% Similarity=0.269 Sum_probs=24.7
Q ss_pred HHHHHHHHHcCCC-eEEEEecCCCCHHHHHHHHHHHHHhc
Q psy1919 638 EVQQLAKEMYEQK-SMLLMGRGGYNYATCMEGALKIKELT 676 (737)
Q Consensus 638 ~~~~lA~~l~~~~-~~~~lG~GG~~y~~A~EgALKlkE~s 676 (737)
.++++|+.|...+ .+++.|. |.......+.++.+.-+.
T Consensus 482 ~i~~~A~~la~a~~~~I~~G~-g~~~~~~~~~~~~l~~~l 520 (847)
T PRK08166 482 KADVIAQALAGAKKPLIISGT-SAGSPAIIEAAANVAKAL 520 (847)
T ss_pred HHHHHHHHHhcCCCcEEEEeC-cccChHHHHHHHHHHHHH
Confidence 6778888887665 4778898 775544445555544433
No 212
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=34.55 E-value=34 Score=32.01 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=31.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEe--cCCCCccccccceEEEc
Q psy1919 527 DVCFFISQSGETADSLMALRYCKARGALIVGVT--NTVGSSISRESHCGIHI 576 (737)
Q Consensus 527 dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaIT--n~~~S~La~~AD~~L~~ 576 (737)
|.+|++|-.+ +...+++.++++|.+|+.+. ......|.+.||..+.+
T Consensus 97 d~ivLvSgD~---Df~~~v~~l~~~g~~V~v~~~~~~~s~~L~~~ad~f~~~ 145 (146)
T PF01936_consen 97 DTIVLVSGDS---DFAPLVRKLRERGKRVIVVGAEDSASEALRSAADEFISI 145 (146)
T ss_dssp SEEEEE---G---GGHHHHHHHHHH--EEEEEE-GGGS-HHHHHHSSEEEE-
T ss_pred CEEEEEECcH---HHHHHHHHHHHcCCEEEEEEeCCCCCHHHHHhcCEEEeC
Confidence 7888888774 57777888889999887777 45666688889987764
No 213
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=34.46 E-value=97 Score=30.87 Aligned_cols=49 Identities=12% Similarity=0.239 Sum_probs=36.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecCCCC--ccccccceEEEcCC
Q psy1919 527 DVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGS--SISRESHCGIHINA 578 (737)
Q Consensus 527 dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~~~S--~La~~AD~~L~~~a 578 (737)
|.++++|-.|. -..+++.+|++|..|+++...... +|.+.||..+++..
T Consensus 107 D~~vLvSgD~D---F~~Lv~~lre~G~~V~v~g~~~~ts~~L~~acd~FI~L~~ 157 (160)
T TIGR00288 107 DAVALVTRDAD---FLPVINKAKENGKETIVIGAEPGFSTALQNSADIAIILGE 157 (160)
T ss_pred CEEEEEeccHh---HHHHHHHHHHCCCEEEEEeCCCCChHHHHHhcCeEEeCCC
Confidence 67788887764 445667888899999999954322 58899999888863
No 214
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=34.11 E-value=1.9e+02 Score=35.64 Aligned_cols=55 Identities=13% Similarity=0.206 Sum_probs=34.1
Q ss_pred CCeEEEEcCC-CCc-----HHHHHHHHHHHHcCCeEEEEecCCCCcc-ccccceEEEcCCCCC
Q psy1919 526 DDVCFFISQS-GET-----ADSLMALRYCKARGALIVGVTNTVGSSI-SRESHCGIHINAGPE 581 (737)
Q Consensus 526 ~dlvI~ISqS-GeT-----~etl~al~~AKe~Ga~tIaITn~~~S~L-a~~AD~~L~~~ag~E 581 (737)
-+++|++... .+| ......++.++++|+++|.|--.. |+. +..||..|.+..|.+
T Consensus 215 a~~il~~G~N~~~s~~~~~~~~~~~~~~~~~~G~kiivvDPr~-t~taa~~Ad~~l~irPGtD 276 (797)
T TIGR02166 215 SKLVVMFGNNPAETRMSGGGQTYYFLQALEKSNARVIVIDPRY-TDTVAGREDEWIPIRPGTD 276 (797)
T ss_pred CCEEEEECCCHHHhcCCCcchHHHHHHHHHHCCCeEEEECCCC-CccchhcCCEEECCCCCCH
Confidence 4566666443 233 123344555567899999886654 454 468999988876544
No 215
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=32.93 E-value=19 Score=38.02 Aligned_cols=34 Identities=18% Similarity=0.090 Sum_probs=28.8
Q ss_pred ccc--cccccceEEeccCcccccc----cceEEEeecCcc
Q psy1919 121 QPL--EDKQVEYFFASDASAVIEH----TNRVIFLERFDR 154 (737)
Q Consensus 121 ~~~--~~~~~~~~~~s~~~~~~~~----~~~~i~l~~~~~ 154 (737)
+|+ |.+++.++|||+..++..+ +.++..|++|+.
T Consensus 207 rPL~~g~~~~~~~~ASE~~al~~~~~~~~~~~~~l~pGe~ 246 (249)
T cd01907 207 RPAVVAETDDYVAIASEECAIREIPDRDNAKVWEPRPGEY 246 (249)
T ss_pred ccEEEEEECCEEEEEEcHHHHhccCccchheEecCCCCce
Confidence 787 6667889999999999988 788888888764
No 216
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=32.86 E-value=2.6e+02 Score=28.51 Aligned_cols=67 Identities=31% Similarity=0.335 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhcCCcEEEeccccccccCCCCCCCCeEEEEcCCCC--cHHHHHHHHHHHHcCCeEEEEe
Q psy1919 492 SAVATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGE--TADSLMALRYCKARGALIVGVT 559 (737)
Q Consensus 492 aA~~~~~~l~~~~gi~v~~~~ase~~~~~~~l~~~dlvI~ISqSGe--T~etl~al~~AKe~Ga~tIaIT 559 (737)
+...++.++++..++.+.+....+.... ..+..-|++|..+..|. +.+..++++..-++|...|+|=
T Consensus 20 ~~~~l~~ll~~~~~~~v~~~~~~~~~~~-~~L~~~Dvvv~~~~~~~~l~~~~~~al~~~v~~Ggglv~lH 88 (217)
T PF06283_consen 20 AKKALAQLLEESEGFEVTVTEDPDDLTP-ENLKGYDVVVFYNTGGDELTDEQRAALRDYVENGGGLVGLH 88 (217)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSGGCTSH-HCHCT-SEEEEE-SSCCGS-HHHHHHHHHHHHTT-EEEEEG
T ss_pred HHHHHHHHhccCCCEEEEEEeCcccCCh-hHhcCCCEEEEECCCCCcCCHHHHHHHHHHHHcCCCEEEEc
Confidence 3445555666445666665543232211 23556789999998884 8899999999989999999987
No 217
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.38 E-value=1.9e+02 Score=32.94 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=21.7
Q ss_pred HcCCCeEEEEecchhHHHHHHHHHHHHHhcC-CcEEEe
Q psy1919 475 IRRCRRLMMIGCGTSYHSAVATRQLLEELTE-LPVMVE 511 (737)
Q Consensus 475 L~~akrI~ivG~GsS~~aA~~~~~~l~~~~g-i~v~~~ 511 (737)
+.+.++|+|+|.|.|+.++... +.+..+ ..+...
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~---l~~~~~~~~v~~~ 38 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKH---LRKYQPQLTVKVI 38 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHH---HHhcCCCCeEEEE
Confidence 3445789999999998776643 333333 455443
No 218
>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional
Probab=29.25 E-value=2.6e+02 Score=34.68 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=33.1
Q ss_pred CCeEEEEcCC-CCcH----HHHHHHHHHH-HcCCeEEEEecCCCCccc-cccceEEEcCCCCC
Q psy1919 526 DDVCFFISQS-GETA----DSLMALRYCK-ARGALIVGVTNTVGSSIS-RESHCGIHINAGPE 581 (737)
Q Consensus 526 ~dlvI~ISqS-GeT~----etl~al~~AK-e~Ga~tIaITn~~~S~La-~~AD~~L~~~ag~E 581 (737)
-+++|++... -+|. ....-+..++ ++|+++|.|-- .-|+.+ ..||..|.+..|.+
T Consensus 232 ad~il~~G~N~~~t~~~~~~~~~~~~~a~~~~G~klivIDP-r~t~taa~~AD~~l~irPGTD 293 (814)
T PRK14990 232 SKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDP-RYTDTGAGREDEWIPIRPGTD 293 (814)
T ss_pred CCEEEEECCChHHhcCCCCcHHHHHHHHHHHCCCeEEEECC-CCCCcccccCCeEECCCCCcH
Confidence 4666666443 2221 1223444455 57999988854 456665 68999988765544
No 219
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=28.70 E-value=2.2e+02 Score=28.40 Aligned_cols=43 Identities=14% Similarity=0.033 Sum_probs=31.9
Q ss_pred HHHHHHcCC-CeEEEEecCCCCHHHHHHHHHHHHHhccccccccc
Q psy1919 641 QLAKEMYEQ-KSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIM 684 (737)
Q Consensus 641 ~lA~~l~~~-~~~~~lG~GG~~y~~A~EgALKlkE~s~i~Ae~~~ 684 (737)
++++.++++ +.++++|. |...+-|.+...+|-|...+|...-.
T Consensus 19 ~aa~lLk~AKRPvIivG~-ga~~~~a~e~l~~laEklgiPVvtT~ 62 (162)
T TIGR00315 19 LVAMMIKRAKRPLLIVGP-ENLEDEEKELIVKFIEKFDLPVVATA 62 (162)
T ss_pred HHHHHHHcCCCcEEEECC-CcCcccHHHHHHHHHHHHCCCEEEcC
Confidence 334444444 45788899 88888899999999999988766544
No 220
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=28.67 E-value=31 Score=40.19 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=33.3
Q ss_pred ccc--cccccceEEeccCccc----ccccceEEEeecCcccccccCceeee
Q psy1919 121 QPL--EDKQVEYFFASDASAV----IEHTNRVIFLERFDRGNCNCQSLTVP 165 (737)
Q Consensus 121 ~~~--~~~~~~~~~~s~~~~~----~~~~~~~i~l~~~~~~~~~~~~~~~~ 165 (737)
+|| |.++++++|||++.|| .+++++ ++.|+...++.+.+...
T Consensus 188 rPL~~G~~~~~~~~ASE~~Al~~~g~~~ir~---v~PGeiv~i~~~g~~~~ 235 (475)
T PRK07631 188 RPLSIGRLGDAYVVASETCAFDVIGATYERE---VEPGELLIINDEGMRSE 235 (475)
T ss_pred CCEEEEEeCCEEEEEeChHHHhhcCcceEEE---cCCCeEEEEECCcEEEE
Confidence 788 6667789999999999 566666 78888888887776553
No 221
>PLN02509 cystathionine beta-lyase
Probab=28.48 E-value=9.9e+02 Score=27.78 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=29.2
Q ss_pred cCCCCcHHHHHHHHHHHHcCCeEEEEecCC-----CCccccccceEEEc
Q psy1919 533 SQSGETADSLMALRYCKARGALIVGVTNTV-----GSSISRESHCGIHI 576 (737)
Q Consensus 533 SqSGeT~etl~al~~AKe~Ga~tIaITn~~-----~S~La~~AD~~L~~ 576 (737)
+..|.-.++-+..+.|+++|+.+|. =+.- ..++...+|+++..
T Consensus 228 NPtG~i~Dl~~I~~lAk~~g~~lIV-D~A~a~~~~~~pl~~gaDivv~S 275 (464)
T PLN02509 228 NPRQQISDIRKIAEMAHAQGALVLV-DNSIMSPVLSRPLELGADIVMHS 275 (464)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEE-ECCccccccCChhhcCCcEEEec
Confidence 4568888999999999999987763 2211 23344467877654
No 222
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=28.41 E-value=1.8e+02 Score=29.23 Aligned_cols=91 Identities=13% Similarity=0.117 Sum_probs=0.0
Q ss_pred cchhHHHcCCCeEEEE-ecchhH-HHHHHHHHHHHHhcCCcEEEecc-------ccccccCCCC----------------
Q psy1919 469 KDYIPEIRRCRRLMMI-GCGTSY-HSAVATRQLLEELTELPVMVELA-------SDFLDRNTPV---------------- 523 (737)
Q Consensus 469 ~~~~~~L~~akrI~iv-G~GsS~-~aA~~~~~~l~~~~gi~v~~~~a-------se~~~~~~~l---------------- 523 (737)
+.+++.|.+++|.+|+ |.|... ..+...-..|.+..++|+..... -.....+..+
T Consensus 25 ~~aa~lI~~AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~~~~lg~lg~~~~~p~~e~~~ 104 (171)
T PRK00945 25 KIAAMMIKKAKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDAKYINLHELTNYLKDPNWKGLD 104 (171)
T ss_pred HHHHHHHHhCCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccCCcccHHHHHhhccCchhhhhc
Q ss_pred --CCCCeEEEE-cCCCCcHHHHHHHHHHHHcCCeEEEEecC
Q psy1919 524 --FRDDVCFFI-SQSGETADSLMALRYCKARGALIVGVTNT 561 (737)
Q Consensus 524 --~~~dlvI~I-SqSGeT~etl~al~~AKe~Ga~tIaITn~ 561 (737)
..-|++|++ +.--.+.-++..++.... .++|+|...
T Consensus 105 g~~~~DlvlfvG~~~~~~~~~l~~lk~f~~--~~~~~~~~~ 143 (171)
T PRK00945 105 GNGNYDLVIFIGVTYYYASQGLSALKHFSP--LKTITIDRY 143 (171)
T ss_pred CCCCcCEEEEecCCchhHHHHHHHHhhcCC--ceEEEecCC
No 223
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=27.54 E-value=68 Score=30.42 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHHHHHcCCeEEEEecC--CCCccccccc
Q psy1919 525 RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNT--VGSSISRESH 571 (737)
Q Consensus 525 ~~dlvI~ISqSGeT~etl~al~~AKe~Ga~tIaITn~--~~S~La~~AD 571 (737)
.-|.+|++|-.| +.+.+++.++++|.+++.+... ....|.+.||
T Consensus 99 ~~d~ivLvSgD~---Df~~~i~~lr~~G~~V~v~~~~~~~s~~L~~~~d 144 (149)
T cd06167 99 RIDTIVLVSGDS---DFVPLVERLRELGKRVIVVGFEAKTSRELRKAAD 144 (149)
T ss_pred CCCEEEEEECCc---cHHHHHHHHHHcCCEEEEEccCccChHHHHHhCC
Confidence 347888888766 7888899999999999998874 2333555565
No 224
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=26.39 E-value=63 Score=28.07 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=33.4
Q ss_pred CeEEEEcCCCCc---HHHHHHHHHHHHcCCeEEEEecCCCCccccccce
Q psy1919 527 DVCFFISQSGET---ADSLMALRYCKARGALIVGVTNTVGSSISRESHC 572 (737)
Q Consensus 527 dlvI~ISqSGeT---~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~ 572 (737)
..|.+|...|+. ..+-+|++.|++.|...|-|.....-|++++.|+
T Consensus 13 ~~VrlI~~~g~~lGv~~~~eAl~~A~~~~lDLV~v~~~~~PPVcKi~dy 61 (76)
T PF05198_consen 13 PEVRLIDEDGEQLGVMSLREALRLAKEKGLDLVEVSPNADPPVCKIMDY 61 (76)
T ss_dssp SEEEEE-TTS-EEEEEEHHHHHHHHHHTT-EEEEEETTSSS-EEEEE-H
T ss_pred CEEEEECCCCcEeceEEHHHHHHHHHHcCCcEEEEcCCCCCCeEEEech
Confidence 456667777875 3578999999999999999998888888887664
No 225
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=26.13 E-value=1.7e+02 Score=31.99 Aligned_cols=127 Identities=17% Similarity=0.176 Sum_probs=70.7
Q ss_pred EEEEcCCCCc---HHHHHHHHHHHHcC-CeEEEEecCCCCc-ccc--ccceEE-EcCCCCCccccchhHHHHHHHHHHHH
Q psy1919 529 CFFISQSGET---ADSLMALRYCKARG-ALIVGVTNTVGSS-ISR--ESHCGI-HINAGPEIGVASTKAYTSQFISLVMF 600 (737)
Q Consensus 529 vI~ISqSGeT---~etl~al~~AKe~G-a~tIaITn~~~S~-La~--~AD~~L-~~~ag~E~~vasTksftsql~~L~lL 600 (737)
.++||-+||- +.+-+.++.+|++| .+|..|||..--. +.+ .+|.+. -+.+..+. +|-
T Consensus 82 ~vtis~~GEPTLy~~L~elI~~~k~~g~~~tflvTNgslpdv~~~L~~~dql~~sLdA~~~~------~~~--------- 146 (296)
T COG0731 82 HVTISLSGEPTLYPNLGELIEEIKKRGKKTTFLVTNGSLPDVLEELKLPDQLYVSLDAPDEK------TFR--------- 146 (296)
T ss_pred EEEEeCCCCcccccCHHHHHHHHHhcCCceEEEEeCCChHHHHHHhccCCEEEEEeccCCHH------HHH---------
Confidence 6889999994 66788999999999 7999999853311 111 234322 22232221 110
Q ss_pred HHHHhhhhcchHHHHHHHHHHHHHHHHH-HHH-Hh--------cc-cHHHHHHHHHHcCCCeEEEEecCCCCHHHHHHHH
Q psy1919 601 ALVMCEDRISLQTRRNEIIKGLKVIHEQ-IRE-VL--------QM-DSEVQQLAKEMYEQKSMLLMGRGGYNYATCMEGA 669 (737)
Q Consensus 601 al~la~~~~~~~~~~~~~~~~l~~l~~~-i~~-vl--------~~-~~~~~~lA~~l~~~~~~~~lG~GG~~y~~A~EgA 669 (737)
.+ .+.......+.+++.|..+++. -.. ++ .. ++.++++|+.+.....-++--. ++.++-|....
T Consensus 147 --~I--nRP~~~~~~e~ile~L~~~~~~~~~~~vir~tlvkg~N~~~e~~~~~a~ll~~~~Pd~velk-~~~rpgas~~~ 221 (296)
T COG0731 147 --RI--NRPHKKDSWEKILEGLEIFRSEYKGRTVIRTTLVKGINDDEEELEEYAELLERINPDFVELK-TYMRPGASRYR 221 (296)
T ss_pred --Hh--cCCCCcchHHHHHHHHHHhhhcCCCcEEEEEEEeccccCChHHHHHHHHHHHhcCCCeEEEe-cCccCChHhhc
Confidence 01 1111122346677777777654 111 11 12 3347888888876654444344 46777777666
Q ss_pred HHHHHh
Q psy1919 670 LKIKEL 675 (737)
Q Consensus 670 LKlkE~ 675 (737)
|+..++
T Consensus 222 l~~~~~ 227 (296)
T COG0731 222 LPRSNM 227 (296)
T ss_pred cCcccc
Confidence 555444
No 226
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.44 E-value=1.6e+02 Score=34.16 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=21.4
Q ss_pred CCeEEEEecchhHHHHHHHHHHHHHhcCCcEEEec
Q psy1919 478 CRRLMMIGCGTSYHSAVATRQLLEELTELPVMVEL 512 (737)
Q Consensus 478 akrI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ 512 (737)
.++|+|+|.|.|..+ ++.+|.+. |..+....
T Consensus 7 ~~~i~v~G~G~sG~s---~a~~L~~~-G~~v~~~D 37 (498)
T PRK02006 7 GPMVLVLGLGESGLA---MARWCARH-GARLRVAD 37 (498)
T ss_pred CCEEEEEeecHhHHH---HHHHHHHC-CCEEEEEc
Confidence 578999999999754 45556665 46665543
No 227
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=25.40 E-value=3.7e+02 Score=30.90 Aligned_cols=54 Identities=11% Similarity=0.030 Sum_probs=34.6
Q ss_pred CCCCCCeEEEEcCCCCcH----HHHHHHHHHHHcCCeEEEEecCC-----CCccccccceEEEc
Q psy1919 522 PVFRDDVCFFISQSGETA----DSLMALRYCKARGALIVGVTNTV-----GSSISRESHCGIHI 576 (737)
Q Consensus 522 ~l~~~dlvI~ISqSGeT~----etl~al~~AKe~Ga~tIaITn~~-----~S~La~~AD~~L~~ 576 (737)
.+.+++-+|++-.-|+.. ++-+..+.|+++|+.+|. =|.- -.|+..-||++++-
T Consensus 143 ~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~liv-D~T~~tP~~~~pl~~GADIvv~S 205 (432)
T PRK06702 143 LANDKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIV-DNTLATPYLCQAFEHGANIIVHS 205 (432)
T ss_pred hCCcCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEE-ECCCCchhhCChhhcCCCEEEEc
Confidence 344555444444457766 888889999999987654 2222 33566678988764
No 228
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=25.10 E-value=2.9e+02 Score=33.00 Aligned_cols=114 Identities=13% Similarity=0.164 Sum_probs=59.3
Q ss_pred cccchhHHHcCCCeEEEEecchhHH-HHHHHHHHHHHhcCCcEEEecc------c----cccccCC--CCCCCCeEEEEc
Q psy1919 467 GIKDYIPEIRRCRRLMMIGCGTSYH-SAVATRQLLEELTELPVMVELA------S----DFLDRNT--PVFRDDVCFFIS 533 (737)
Q Consensus 467 ~l~~~~~~L~~akrI~ivG~GsS~~-aA~~~~~~l~~~~gi~v~~~~a------s----e~~~~~~--~l~~~dlvI~IS 533 (737)
.+..+++.|+.+++|.+++.+...+ ....++.++..++...+..... . .+..... .+..-|++|++.
T Consensus 291 Al~~ia~kL~~i~~va~~~~~~~~~e~~~~~~~~~~~lGt~~~~~~~~~~~~~~~~~~~~~~~g~~~~di~~ad~il~~G 370 (603)
T TIGR01973 291 ALAIAAEKLKASSRIGGIAGPRSSLEELFALKKLVRKLGSENFDLRIRNYEFESADLRANYLFNTTLADIEEADLVLLVG 370 (603)
T ss_pred HHHHHHHHHhccCcEEEEeCCCCCHHHHHHHHHHHHHhCCCcccccccccccccchhhcccccCCCHHHHHhCCEEEEEc
Confidence 3455666676667888887654333 3333444444443211111000 0 0000011 113356777775
Q ss_pred CC-CCcH-HHHHHHHHHHHcC-CeEEEEecCCCCccccccceEEEcCCCCC
Q psy1919 534 QS-GETA-DSLMALRYCKARG-ALIVGVTNTVGSSISRESHCGIHINAGPE 581 (737)
Q Consensus 534 qS-GeT~-etl~al~~AKe~G-a~tIaITn~~~S~La~~AD~~L~~~ag~E 581 (737)
.. .++. -....++.++++| +++|.|- ...+..+..||..+.+..|.+
T Consensus 371 ~N~~~s~p~~~~~i~~a~~~ggaklivid-pr~s~ta~~Ad~~l~i~Pgtd 420 (603)
T TIGR01973 371 ADLRQEAPLLNLRLRKAVKKGGAKVALIG-IEKWNLTYPANTNLVFHPGLS 420 (603)
T ss_pred cCchhhhHHHHHHHHHHHhcCCcEEEEEC-CccccchhhhccceeecCCcc
Confidence 44 3333 2334455666666 7766655 467889999999887765544
No 229
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.86 E-value=2.6e+02 Score=24.88 Aligned_cols=81 Identities=9% Similarity=0.046 Sum_probs=46.8
Q ss_pred eEEEEecchhHHHHHHHHHHHHHhcCCcEEEec-cccccc----cCCCCCCCCeEEEEcCCCCcHHHHHHHHHHHHcCCe
Q psy1919 480 RLMMIGCGTSYHSAVATRQLLEELTELPVMVEL-ASDFLD----RNTPVFRDDVCFFISQSGETADSLMALRYCKARGAL 554 (737)
Q Consensus 480 rI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~-ase~~~----~~~~l~~~dlvI~ISqSGeT~etl~al~~AKe~Ga~ 554 (737)
+|+++|.=.... ...+..+++.+ .....+. ...+.. -+..+..-|+||++..-=.=..+..+-+.||+.|.|
T Consensus 1 ~vliVGG~~~~~--~~~~~~~~~~G-~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip 77 (97)
T PF10087_consen 1 SVLIVGGREDRE--RRYKRILEKYG-GKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIP 77 (97)
T ss_pred CEEEEcCCcccH--HHHHHHHHHcC-CEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCc
Confidence 367777622211 23345666664 4444440 011100 123455668888877766667788888899999999
Q ss_pred EEEEecCCC
Q psy1919 555 IVGVTNTVG 563 (737)
Q Consensus 555 tIaITn~~~ 563 (737)
++-.-+..-
T Consensus 78 ~~~~~~~~~ 86 (97)
T PF10087_consen 78 IIYSRSRGV 86 (97)
T ss_pred EEEECCCCH
Confidence 887654433
No 230
>PRK15102 trimethylamine N-oxide reductase I catalytic subunit; Provisional
Probab=23.93 E-value=4.8e+02 Score=32.53 Aligned_cols=32 Identities=16% Similarity=0.319 Sum_probs=22.2
Q ss_pred HHHHHHHhc-ccHHHHHHHHHHcCCCeEEEEec
Q psy1919 626 HEQIREVLQ-MDSEVQQLAKEMYEQKSMLLMGR 657 (737)
Q Consensus 626 ~~~i~~vl~-~~~~~~~lA~~l~~~~~~~~lG~ 657 (737)
|+.++++-. ..+.++++|+.+...+..++.|.
T Consensus 330 pe~aa~itGV~ae~I~~lA~~~a~~~~~i~~g~ 362 (825)
T PRK15102 330 PEWAEKICGIDAETIRELARQMAKGRTQIIAGW 362 (825)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhcCCEEEEee
Confidence 455555443 34689999999987776667777
No 231
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=23.63 E-value=1.1e+03 Score=26.84 Aligned_cols=201 Identities=13% Similarity=0.120 Sum_probs=98.4
Q ss_pred HcCCCeEEEEec--chhHHHHHHHHHHHHHhcCCcEEEeccccccccCCCCC-CCCeEE-EEcCCC---CcHHHHHHHHH
Q psy1919 475 IRRCRRLMMIGC--GTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVF-RDDVCF-FISQSG---ETADSLMALRY 547 (737)
Q Consensus 475 L~~akrI~ivG~--GsS~~aA~~~~~~l~~~~gi~v~~~~ase~~~~~~~l~-~~dlvI-~ISqSG---eT~etl~al~~ 547 (737)
++..++|++.-. |..+..+ ...+.+ .|+.+....+.........+. +++-+| +=|-|- +-.|+-...+.
T Consensus 99 l~~GD~vl~~~~~YG~t~~~~---~~~l~~-~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~ 174 (396)
T COG0626 99 LKAGDHVLLPDDLYGGTYRLF---EKILQK-FGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARL 174 (396)
T ss_pred cCCCCEEEecCCccchHHHHH---HHHHHh-cCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHH
Confidence 344666666554 3333222 223344 467777655443311112222 345444 445544 44677788888
Q ss_pred HHHcCCeEEEEecCCCCc-----cccccceEEEcCC----CCCcccc---c-hhHHHHHHHHHHHHHHHHhhhhcchHHH
Q psy1919 548 CKARGALIVGVTNTVGSS-----ISRESHCGIHINA----GPEIGVA---S-TKAYTSQFISLVMFALVMCEDRISLQTR 614 (737)
Q Consensus 548 AKe~Ga~tIaITn~~~S~-----La~~AD~~L~~~a----g~E~~va---s-Tksftsql~~L~lLal~la~~~~~~~~~ 614 (737)
|++.| ..+.|=|+-.+| |.--||++++-.+ |.-..++ . -+....+......- ..++.. . ...+
T Consensus 175 A~~~g-~~vvVDNTfatP~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~-~~~G~~-l-~p~d 250 (396)
T COG0626 175 AKAYG-ALVVVDNTFATPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQR-ANTGAV-L-SPFD 250 (396)
T ss_pred HHhcC-CEEEEECCcccccccChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHH-hhcCCC-C-CHHH
Confidence 99999 566676665665 4445899886532 2222111 1 12233222100000 001110 0 1111
Q ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCCCe---EEEEe----------------cCCCCHH--HHH-HHHHHH
Q psy1919 615 RNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKS---MLLMG----------------RGGYNYA--TCM-EGALKI 672 (737)
Q Consensus 615 ~~~~~~~l~~l~~~i~~vl~~~~~~~~lA~~l~~~~~---~~~lG----------------~GG~~y~--~A~-EgALKl 672 (737)
.--+++.++-|+-.+++.- +.+.++|++|...+. +++=| . |..++ +.- |.+-||
T Consensus 251 A~l~lRGlkTL~~Rm~~~~---~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~-gg~~Sf~l~~~~~~~~f 326 (396)
T COG0626 251 AWLLLRGLRTLALRMERHN---ENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGY-GGLFSFELKNEEAAKKF 326 (396)
T ss_pred HHHHHhccchHHHHHHHHH---HHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCC-ceEEEEEeCChHHHHHH
Confidence 1223445555554444432 346778888776543 44443 2 21111 122 678888
Q ss_pred HHhcccccccccccc
Q psy1919 673 KELTYMHSEGIMAGE 687 (737)
Q Consensus 673 kE~s~i~Ae~~~a~E 687 (737)
.+...+...+.+.|-
T Consensus 327 ~~~L~l~~~a~SlGg 341 (396)
T COG0626 327 LDSLKLFKLAESLGG 341 (396)
T ss_pred HHhCCccEEeccCCC
Confidence 888888877776653
No 232
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=23.60 E-value=40 Score=39.38 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=31.8
Q ss_pred ccc--ccc-ccceEEeccCccc----ccccceEEEeecCcccccccCceeee
Q psy1919 121 QPL--EDK-QVEYFFASDASAV----IEHTNRVIFLERFDRGNCNCQSLTVP 165 (737)
Q Consensus 121 ~~~--~~~-~~~~~~~s~~~~~----~~~~~~~i~l~~~~~~~~~~~~~~~~ 165 (737)
+|| |.. +++++|||++.|| .+++++ |+.|++..++.+.+.+.
T Consensus 189 rPL~~G~~~~~~~~~ASE~~Al~~ig~~~ir~---l~PGEiv~i~~~g~~~~ 237 (484)
T PRK07272 189 RPLSIGKMKNGAYVVASETCAFDVVGAEWVRD---VQPGEIVIIDDEGIQYD 237 (484)
T ss_pred CcEEEEEecCCEEEEEECHHHHhccCCceEEE---cCCCeEEEEECCceEEE
Confidence 787 443 4579999999999 555555 88888888888776653
No 233
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=23.28 E-value=3.6e+02 Score=30.09 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=36.0
Q ss_pred CCCeEEEEcCCCCc--HHH-HHHHHHHHHcCCeEEEEecCCCCccccccceEEEcCCCCC
Q psy1919 525 RDDVCFFISQSGET--ADS-LMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE 581 (737)
Q Consensus 525 ~~dlvI~ISqSGeT--~et-l~al~~AKe~Ga~tIaITn~~~S~La~~AD~~L~~~ag~E 581 (737)
.-|++|++...-.. .-. ....+.++++|+++|.|--. -++.+..||..|.+..|.+
T Consensus 111 ~ad~il~~G~n~~~~~~~~~~~~~~~~~~~g~k~v~vdP~-~t~~a~~ad~~i~i~PGtD 169 (432)
T PF00384_consen 111 NADVILIWGANPAESHPHLNARFRKAARKRGAKLVVVDPR-RTPTAAKADEWIPIRPGTD 169 (432)
T ss_dssp H-SEEEEES--HHHHSHHHHHHHHHHHHHCTSEEEEEESS-B-HHGGGTSEEEEE-TTTH
T ss_pred ccceEEEcccCccccccccccccccccccCCcceEEEEec-cchhhhhcccccccccccc
Confidence 34677776554322 222 45567788889999988865 5568999999998876544
No 234
>TIGR02164 torA trimethylamine-N-oxide reductase TorA. This very narrowly defined family represents TorA, part of a family of related molybdoenzymes that include biotin sulfoxide reductases, dimethyl sulfoxide reductases, and at least two different subfamilies of trimethylamine-N-oxide reductases. A single enzyme from the larger family may have more than one activity. TorA typically is located in the periplasm, has a Tat (twin-arginine translocation)-dependent signal sequence, and is encoded in a torCAD operon.
Probab=22.27 E-value=5.6e+02 Score=31.92 Aligned_cols=32 Identities=16% Similarity=0.286 Sum_probs=21.2
Q ss_pred HHHHHHHhc-ccHHHHHHHHHHcCCCeEEEEec
Q psy1919 626 HEQIREVLQ-MDSEVQQLAKEMYEQKSMLLMGR 657 (737)
Q Consensus 626 ~~~i~~vl~-~~~~~~~lA~~l~~~~~~~~lG~ 657 (737)
|+.++++-. ..+.++++|+.+...+..+++|.
T Consensus 327 pe~aa~itGV~ae~I~~lA~~~a~~~~~~~~g~ 359 (822)
T TIGR02164 327 PEWAAKICGVEAEVIRDLARMLVKGRTQLIFGW 359 (822)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhcCCEEEEec
Confidence 344444432 34688999999987776666776
No 235
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=22.12 E-value=3.1e+02 Score=28.40 Aligned_cols=67 Identities=16% Similarity=0.056 Sum_probs=43.6
Q ss_pred CeEEEEecchhHHHHHHHHHHHHHhcCCcEEEeccccc--cccCCCCCCCCeEEEEcCCCCcHHHHHHHHH
Q psy1919 479 RRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDF--LDRNTPVFRDDVCFFISQSGETADSLMALRY 547 (737)
Q Consensus 479 krI~ivG~GsS~~aA~~~~~~l~~~~gi~v~~~~ase~--~~~~~~l~~~dlvI~ISqSGeT~etl~al~~ 547 (737)
--++|++++..-.....++ .-++. ++++.+....++ ...+..+..+.+.|+||-+|.++-+-..++.
T Consensus 73 ~~lviaAt~d~~ln~~i~~-~a~~~-~i~vNv~D~p~~~~f~~Pa~~~r~~l~iaIsT~G~sP~la~~ir~ 141 (210)
T COG1648 73 AFLVIAATDDEELNERIAK-AARER-RILVNVVDDPELCDFIFPAIVDRGPLQIAISTGGKSPVLARLLRE 141 (210)
T ss_pred ceEEEEeCCCHHHHHHHHH-HHHHh-CCceeccCCcccCceecceeeccCCeEEEEECCCCChHHHHHHHH
Confidence 4577777777655444433 33333 588887765443 2234456788899999999999876655554
No 236
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=22.01 E-value=1.1e+02 Score=31.53 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=29.6
Q ss_pred cCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCc
Q psy1919 533 SQSGETADSLMALRYCKARGALIVGVTNTVGSS 565 (737)
Q Consensus 533 SqSGeT~etl~al~~AKe~Ga~tIaITn~~~S~ 565 (737)
=.||.|.+++..++.++.+|.+|+..|..-++.
T Consensus 13 M~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R 45 (201)
T COG1435 13 MFSGKTEELLRRARRYKEAGMKVLVFKPAIDTR 45 (201)
T ss_pred CcCcchHHHHHHHHHHHHcCCeEEEEecccccc
Confidence 479999999999999999999999999866654
No 237
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=21.83 E-value=2e+02 Score=25.87 Aligned_cols=75 Identities=19% Similarity=0.198 Sum_probs=39.1
Q ss_pred EEEEecchh-HHHHHHHHHHHHHhcCCcEEEecc--ccccccCCCCCCCCeEEEEcCCCCcHHHHHHH-HHHHHcCCeEE
Q psy1919 481 LMMIGCGTS-YHSAVATRQLLEELTELPVMVELA--SDFLDRNTPVFRDDVCFFISQSGETADSLMAL-RYCKARGALIV 556 (737)
Q Consensus 481 I~ivG~GsS-~~aA~~~~~~l~~~~gi~v~~~~a--se~~~~~~~l~~~dlvI~ISqSGeT~etl~al-~~AKe~Ga~tI 556 (737)
++++|.|-| ...+..++..+.+. |+++.+... +++.. ....-|+++.-.|- ..-.+-+ +.+.+.|+++.
T Consensus 7 Ll~C~~G~sSS~l~~k~~~~~~~~-gi~~~v~a~~~~~~~~---~~~~~Dvill~pqi---~~~~~~i~~~~~~~~ipv~ 79 (95)
T TIGR00853 7 LLLCAAGMSTSLLVNKMNKAAEEY-GVPVKIAAGSYGAAGE---KLDDADVVLLAPQV---AYMLPDLKKETDKKGIPVE 79 (95)
T ss_pred EEECCCchhHHHHHHHHHHHHHHC-CCcEEEEEecHHHHHh---hcCCCCEEEECchH---HHHHHHHHHHhhhcCCCEE
Confidence 466666643 23445555555554 677665432 23311 12344766654443 2223323 34566788999
Q ss_pred EEecCC
Q psy1919 557 GVTNTV 562 (737)
Q Consensus 557 aITn~~ 562 (737)
.|....
T Consensus 80 ~I~~~~ 85 (95)
T TIGR00853 80 VINGAQ 85 (95)
T ss_pred EeChhh
Confidence 887643
No 238
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=21.79 E-value=2.1e+02 Score=28.80 Aligned_cols=37 Identities=22% Similarity=0.429 Sum_probs=26.4
Q ss_pred CCCCCeEEEEcCCCCc-HHHHHHHHHHHHcCCeEEEEe
Q psy1919 523 VFRDDVCFFISQSGET-ADSLMALRYCKARGALIVGVT 559 (737)
Q Consensus 523 l~~~dlvI~ISqSGeT-~etl~al~~AKe~Ga~tIaIT 559 (737)
+-.+|++++.-..|.| +-|-+.++.||++|++||+--
T Consensus 104 ll~gDVvvi~IAGGdT~PvTaaii~ya~~rG~~TisT~ 141 (217)
T COG4015 104 LLKGDVVVICIAGGDTIPVTAAIINYAKERGIKTISTN 141 (217)
T ss_pred hhcCCEEEEEecCCCcchhHHHHHHHHHHcCceEeecC
Confidence 3456765555555655 667788899999999998743
No 239
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=21.57 E-value=1.3e+02 Score=30.29 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=39.1
Q ss_pred EEEEcCCCCc---HHHHHHHHHHHHcCCeEEEEecCCCCccccccceE
Q psy1919 529 CFFISQSGET---ADSLMALRYCKARGALIVGVTNTVGSSISRESHCG 573 (737)
Q Consensus 529 vI~ISqSGeT---~etl~al~~AKe~Ga~tIaITn~~~S~La~~AD~~ 573 (737)
|-+|...|+- ..+-+|++.|.+.|...|-|..+..-|+++.-||.
T Consensus 21 vrlIg~~GeqlGiv~~~eAL~lA~e~~LDLV~Ispna~PPVcKImDYG 68 (176)
T COG0290 21 VRLIGEDGEQLGIVSIEEALKLAEEAGLDLVEISPNAKPPVCKIMDYG 68 (176)
T ss_pred EEEECCCCcEEcceeHHHHHHHHHHcCCCEEEECCCCCCCeeEeeecc
Confidence 6678888875 46789999999999999999999999999987764
No 240
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=20.61 E-value=71 Score=37.58 Aligned_cols=45 Identities=18% Similarity=0.113 Sum_probs=37.7
Q ss_pred ccc--cccccceEEeccCcccccc-cceEEEeecCcccccccCceeee
Q psy1919 121 QPL--EDKQVEYFFASDASAVIEH-TNRVIFLERFDRGNCNCQSLTVP 165 (737)
Q Consensus 121 ~~~--~~~~~~~~~~s~~~~~~~~-~~~~i~l~~~~~~~~~~~~~~~~ 165 (737)
+|+ |..++.++|||++.||... ++.+..++.|+...++.+.+.+.
T Consensus 208 rPL~~g~~~~~~~vASE~~AL~~~g~~~ir~v~PGeiv~I~~~gv~~~ 255 (510)
T PRK07847 208 RPLVLGRLERGWVVASETAALDIVGASFVREIEPGELIAIDADGLRST 255 (510)
T ss_pred CCcEEEEECCeEEEEechHHHhccCCcEEEEECcCEEEEEECCceEEE
Confidence 788 6667789999999999886 67788999999998888887653
No 241
>PRK09004 FMN-binding protein MioC; Provisional
Probab=20.30 E-value=2.9e+02 Score=26.60 Aligned_cols=30 Identities=13% Similarity=-0.109 Sum_probs=22.4
Q ss_pred eEEEEcCCCCcHHHHHHH-HHHHHcCCeEEE
Q psy1919 528 VCFFISQSGETADSLMAL-RYCKARGALIVG 557 (737)
Q Consensus 528 lvI~ISqSGeT~etl~al-~~AKe~Ga~tIa 557 (737)
+++.-|++|+|..+-+.+ +.+++.|..+-.
T Consensus 5 ~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~ 35 (146)
T PRK09004 5 TLISGSTLGGAEYVADHLAEKLEEAGFSTET 35 (146)
T ss_pred EEEEEcCchHHHHHHHHHHHHHHHcCCceEE
Confidence 467789999999987666 557777876543
Done!