RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1919
(737 letters)
>gnl|CDD|215531 PLN02981, PLN02981, glucosamine:fructose-6-phosphate
aminotransferase.
Length = 680
Score = 511 bits (1318), Expect = e-173
Identities = 197/365 (53%), Positives = 274/365 (75%), Gaps = 14/365 (3%)
Query: 363 EDKQVEYFFASDASAVIEHTNRVIFLEDDDVAAVKDGSLSIHRLRRSLDDPHG------- 415
DK E+F ASDASAV+EHT RV+ +ED++V +KDG + I++ G
Sbjct: 235 RDKPKEFFLASDASAVVEHTKRVLVIEDNEVVHLKDGGVGIYKFENEKGRGGGGLSRPAS 294
Query: 416 --REITILKLEIQEIMKGNYSYFMQKEIFEQPESVVNTMRGRI----NFETNSVILGGIK 469
R ++ L++E+++IMKGNY ++MQKEI EQPES+ TMRGR+ + + V+LGG+K
Sbjct: 295 VERALSTLEMEVEQIMKGNYDHYMQKEIHEQPESLTTTMRGRLIRGGSGKAKRVLLGGLK 354
Query: 470 DYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDDVC 529
D++ IRR RR++ IGCGTSY++A+A R +LEEL+ +PV +ELASD LDR P++R+D
Sbjct: 355 DHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSGVPVTMELASDLLDRQGPIYREDTA 414
Query: 530 FFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKA 589
F+SQSGETAD+L AL Y K GAL VG+TNTVGS+ISR +HCG+HINAG EIGVASTKA
Sbjct: 415 VFVSQSGETADTLRALEYAKENGALCVGITNTVGSAISRGTHCGVHINAGAEIGVASTKA 474
Query: 590 YTSQFISLVMFALVMCEDRISLQTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQ 649
YTSQ +++ M AL + ED IS ++RR II GL + ++REVL++D E+++LA+ + ++
Sbjct: 475 YTSQIVAMTMLALALGEDSISSRSRREAIIDGLFDLPNKVREVLKLDQEMKELAELLIDE 534
Query: 650 KSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRD 709
+S+L+ GR GYNYAT +EGALK+KE+ MHSEGI+AGE+KHGPLAL+D ++P+I+I TRD
Sbjct: 535 QSLLVFGR-GYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDETLPIIVIATRD 593
Query: 710 PVYVK 714
+ K
Sbjct: 594 ACFSK 598
Score = 173 bits (439), Expect = 2e-45
Identities = 103/341 (30%), Positives = 159/341 (46%), Gaps = 71/341 (20%)
Query: 4 IALD---AADGVDIAIVKKSGKVSALEDEI--QTRLKELNVEESSATHVGIAHTRWATHG 58
IA+D + + + ++ GK+ +L + + +LN++ H GIAHTRWATHG
Sbjct: 40 IAIDNDPSLESSSPLVFREEGKIESLVRSVYEEVAETDLNLDLVFENHAGIAHTRWATHG 99
Query: 59 APSEVNSHPQRSDIDQTFCVVHNGIVTNYKELKAFLTNKDHRPHG---RSET----MPML 111
P+ NSHPQ S F VVHNGI+TNY+ LK L HG S+T +P L
Sbjct: 100 PPAPRNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLR-----HGFTFESDTDTEVIPKL 154
Query: 112 PRNDSTSEFQPLEDKQVEYFFASDASAVIEHTN---RVIFLERFDRGN---CNCQS---L 162
+ F L +++ + F+ V+ +IF C S L
Sbjct: 155 AK----FVFDKLNEEEGDVTFSQVVMEVMRQLEGAYALIFKSPHYPNELVACKRGSPLLL 210
Query: 163 TVPKSKKERRQDRNKSAVLRTNLWDILLGLSSSWAG--IE------PRGLIEGT------ 208
V KE +++N SAV + + + E ++E T
Sbjct: 211 GV----KELPEEKNSSAVFTSEGFL------TKNRDKPKEFFLASDASAVVEHTKRVLVI 260
Query: 209 -DDDVAAVKDGSLSIHRLRRSLDDPHG---------REITILKLEIQEIMKGNYSYFMQK 258
D++V +KDG + I++ G R ++ L++E+++IMKGNY ++MQK
Sbjct: 261 EDNEVVHLKDGGVGIYKFENEKGRGGGGLSRPASVERALSTLEMEVEQIMKGNYDHYMQK 320
Query: 259 EIFEQPESVVNTMRGRI----NFETNSVILGGIK---RKIR 292
EI EQPES+ TMRGR+ + + V+LGG+K + IR
Sbjct: 321 EIHEQPESLTTTMRGRLIRGGSGKAKRVLLGGLKDHLKTIR 361
>gnl|CDD|234729 PRK00331, PRK00331, glucosamine--fructose-6-phosphate
aminotransferase; Reviewed.
Length = 604
Score = 415 bits (1071), Expect = e-137
Identities = 137/348 (39%), Positives = 216/348 (62%), Gaps = 11/348 (3%)
Query: 368 EYFFASDASAVIEHTNRVIFLEDDDVAAVKDGSLSIHRLRRSLDDPHGREITILKLEIQE 427
E F ASDA A++ +T RVI+LED ++A + + I +P RE+ + +
Sbjct: 188 ENFLASDALALLPYTRRVIYLEDGEIAVLTRDGVEIFDFD---GNPVEREVYTVDWDASA 244
Query: 428 IMKGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGCG 487
KG Y +FM KEI+EQPE++ +T+ GR++ LG + ++++ R+ ++ CG
Sbjct: 245 AEKGGYRHFMLKEIYEQPEAIRDTLEGRLDE------LGEGELADEDLKKIDRIYIVACG 298
Query: 488 TSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRY 547
TSYH+ + + L+E L +PV VE+AS+F R+ + + ISQSGETAD+L ALR
Sbjct: 299 TSYHAGLVAKYLIESLAGIPVEVEIASEFRYRDPVLSPKTLVIAISQSGETADTLAALRL 358
Query: 548 CKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCED 607
K GA + + N GS+I+RES ++ +AGPEIGVASTKA+T+Q L + AL + +
Sbjct: 359 AKELGAKTLAICNVPGSTIARESDAVLYTHAGPEIGVASTKAFTAQLAVLYLLALALAKA 418
Query: 608 RISL-QTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGGYNYATCM 666
R +L +++ L+ + I +VL + ++++LA++ + ++ L +GR G +Y +
Sbjct: 419 RGTLSAEEEADLVHELRELPALIEQVLDLKEQIEELAEDFADARNALFLGR-GVDYPVAL 477
Query: 667 EGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVK 714
EGALK+KE++Y+H+EG AGELKHGP+ALID MPV+ I D +Y K
Sbjct: 478 EGALKLKEISYIHAEGYAAGELKHGPIALIDEGMPVVAIAPNDELYEK 525
Score = 134 bits (341), Expect = 4e-33
Identities = 61/189 (32%), Positives = 76/189 (40%), Gaps = 65/189 (34%)
Query: 10 DGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQR 69
D + + K GKV+ LE +++ EE GI HTRWATHG P+E N+HP
Sbjct: 38 DDGGLEVRKAVGKVANLEAKLE--------EEPLPGTTGIGHTRWATHGKPTERNAHPHT 89
Query: 70 SDIDQTFCVVHNGIVTNYKELKAFLTNKDHR----------PH--------GRS------ 105
VVHNGI+ NY ELK L K H H G
Sbjct: 90 DC-SGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVIAHLIEEELKEGGDLLEAVR 148
Query: 106 ETMPML-------------P------RNDSTSEFQPL-----EDKQVEYFFASDASAVIE 141
+ + L P RN S PL E E F ASDA A++
Sbjct: 149 KALKRLEGAYALAVIDKDEPDTIVAARNGS-----PLVIGLGEG---ENFLASDALALLP 200
Query: 142 HTNRVIFLE 150
+T RVI+LE
Sbjct: 201 YTRRVIYLE 209
Score = 68.1 bits (168), Expect = 7e-12
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 209 DDDVAAVKDGSLSIHRLRRSLDDPHGREITILKLEIQEIMKGNYSYFMQKEIFEQPESVV 268
D ++A + + I +P RE+ + + KG Y +FM KEI+EQPE++
Sbjct: 210 DGEIAVLTRDGVEIFDFD---GNPVEREVYTVDWDASAAEKGGYRHFMLKEIYEQPEAIR 266
Query: 269 NTMRGRINFETNSVILGGIKRKIRPKCIV 297
+T+ GR++ + +KI IV
Sbjct: 267 DTLEGRLDELGEGELADEDLKKIDRIYIV 295
>gnl|CDD|173585 PTZ00394, PTZ00394, glucosamine-fructose-6-phosphate
aminotransferase; Provisional.
Length = 670
Score = 414 bits (1065), Expect = e-135
Identities = 183/360 (50%), Positives = 245/360 (68%), Gaps = 3/360 (0%)
Query: 365 KQVEYFFASDASAVIEHTNRVIFLEDDDVAAVKDGSLSIHRLRRSLDDPHGREITILKLE 424
+E FF+SD ++ E+T V+FLED D+A DG+L + RE+ L +
Sbjct: 240 GPLEVFFSSDVNSFAEYTREVVFLEDGDIAHYCDGALRFYNAAERQRSIVKREVQHLDAK 299
Query: 425 IQEIMKGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKD-YIPEIRRCRRLMM 483
+ + KGNY +FM KEI+EQPESV+++M GRI+F + +V L G I I RR++
Sbjct: 300 PEGLSKGNYPHFMLKEIYEQPESVISSMHGRIDFSSGTVQLSGFTQQSIRAILTSRRILF 359
Query: 484 IGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLM 543
I CGTS +S +A R L EEL LP+ VE ASDFLDR + RDDVCFF+SQSGETAD+LM
Sbjct: 360 IACGTSLNSCLAVRPLFEELVPLPISVENASDFLDRRPRIQRDDVCFFVSQSGETADTLM 419
Query: 544 ALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALV 603
AL+ CK GA+ VG+TN VGSSISR +H IH+NAG E+GVASTKAYTSQ + L + AL+
Sbjct: 420 ALQLCKEAGAMCVGITNVVGSSISRLTHYAIHLNAGVEVGVASTKAYTSQVVVLTLVALL 479
Query: 604 MCEDRISLQTRRNEIIKGLKVIHEQIREVLQMDSE-VQQLAKEMYEQKSMLLMGRGGYNY 662
+ D + LQ RRNEII+GL + I E L++ + V+ LA + E S+L++GR GY+
Sbjct: 480 LSSDSVRLQERRNEIIRGLAELPAAISECLKITHDPVKALAARLKESSSILVLGR-GYDL 538
Query: 663 ATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQV 722
AT ME ALK+KEL+Y+H+EGI +GELKHGPLALID + PV+ + T D + +A+ QV
Sbjct: 539 ATAMEAALKVKELSYVHTEGIHSGELKHGPLALIDETSPVLAMCTHDKHFGLSKSAVQQV 598
Score = 139 bits (352), Expect = 2e-34
Identities = 87/303 (28%), Positives = 135/303 (44%), Gaps = 45/303 (14%)
Query: 16 IVKKSGKVSALEDEIQTRLKELNVEESSAT---HVGIAHTRWATHGAPSEVNSHPQRSDI 72
+V+ G +S L +++ + + AT HVGIAHTRWATHG E N HPQ+S+
Sbjct: 65 VVRSVGNISQLREKVFSEAVAATLPPMDATTSHHVGIAHTRWATHGGVCERNCHPQQSN- 123
Query: 73 DQTFCVVHNGIVTNYKELKAFLTNKDHRPHGRSET-------------MPMLPRNDSTSE 119
+ F +VHNGIVTNY LK L + + ++T + D E
Sbjct: 124 NGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEVISVLSEYLYTRKGIHNFADLALE 183
Query: 120 FQPLED-------KQVEYFFASDASAVIEHTNRVIFLERFDRGNCNCQSLTVPKSKKERR 172
+ + K V +F +A + + ++ + R D C + T
Sbjct: 184 VSRMVEGSYALLVKSV--YFPGQLAASRKGSPLMVGIRRTDDRGCVMKLQTYD------- 234
Query: 173 QDRNKSAVLRTNLWDIL-LGLSSSWAGIEP--RGLIEGTDDDVAAVKDGSLSIHRLRRSL 229
T+L L + SS R ++ D D+A DG+L +
Sbjct: 235 ---------LTDLSGPLEVFFSSDVNSFAEYTREVVFLEDGDIAHYCDGALRFYNAAERQ 285
Query: 230 DDPHGREITILKLEIQEIMKGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKR 289
RE+ L + + + KGNY +FM KEI+EQPESV+++M GRI+F + +V L G +
Sbjct: 286 RSIVKREVQHLDAKPEGLSKGNYPHFMLKEIYEQPESVISSMHGRIDFSSGTVQLSGFTQ 345
Query: 290 KIR 292
+
Sbjct: 346 QSI 348
>gnl|CDD|223526 COG0449, GlmS, Glucosamine 6-phosphate synthetase, contains
amidotransferase and phosphosugar isomerase domains
[Cell envelope biogenesis, outer membrane].
Length = 597
Score = 411 bits (1058), Expect = e-135
Identities = 136/359 (37%), Positives = 222/359 (61%), Gaps = 16/359 (4%)
Query: 366 QVEYFFASDASAVIEHTNRVIFLEDDDVAAVKDGSLSIHRLRRSLDDPHGREITILKLEI 425
+ E F ASD SA++ T R ++LE+ D+A + +SI+ R++ +++ ++
Sbjct: 183 EGENFLASDVSALLNFTRRFVYLEEGDIAKLTTDGVSINDGNVL------RDVPVIEWDL 236
Query: 426 QEIMKGNYSYFMQKEIFEQPESVVNTMRGRINF-ETNSVILGGIKDYIPEIRRCRRLMMI 484
KG + +FM KEI+EQPE++ NT++GR++ N + L +++ R++++
Sbjct: 237 CAAEKGGFRHFMLKEIYEQPEALRNTLQGRLDELVQNELDLDILREV-------DRIIIV 289
Query: 485 GCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMA 544
CGTSYH+ + + E L ++PV VE AS+F R + + + ISQSGETAD+L A
Sbjct: 290 ACGTSYHAGLVAKYFFERLAKIPVEVEEASEFRYREPALNPNTLVIAISQSGETADTLAA 349
Query: 545 LRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVM 604
LR K +GA + +TN GS+I+RES + I AGPEIGVASTKA+T+Q ++L + AL +
Sbjct: 350 LRLAKEQGAKTLAITNVPGSTIARESDHTLLIRAGPEIGVASTKAFTAQVLALYLLALYL 409
Query: 605 CEDRISL-QTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGGYNYA 663
+ R ++ + +IK L+ + I +VL + ++++LAK + + K +GR G Y
Sbjct: 410 AKQRGTISEEEERSLIKELQKLPNHIPKVLAAEEKIKELAKRLADAKDFFFLGR-GVLYP 468
Query: 664 TCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQV 722
+EGALK+KE++Y+H+EG AGELKHGP+ALID + PVI I + ++ K + + +V
Sbjct: 469 VALEGALKLKEISYIHAEGYAAGELKHGPIALIDENTPVIAIAPKPDLFEKTKSNIQEV 527
Score = 108 bits (273), Expect = 1e-24
Identities = 41/94 (43%), Positives = 53/94 (56%), Gaps = 13/94 (13%)
Query: 14 IAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSDID 73
+ + K+ GK+S LE EL +E VGIAHTRWATHG P+ N+HP D
Sbjct: 43 LNVRKQVGKISNLE--------ELLNKEPLIGGVGIAHTRWATHGGPTRANAHP---HSD 91
Query: 74 QTFCVVHNGIVTNYKELKAFLTNKDHRPHGRSET 107
F VVHNGI+ N+ ELK L K + +S+T
Sbjct: 92 GEFAVVHNGIIENFAELKEELEAKGYV--FKSDT 123
Score = 63.7 bits (156), Expect = 2e-10
Identities = 22/84 (26%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 209 DDDVAAVKDGSLSIHRLRRSLDDPHGREITILKLEIQEIMKGNYSYFMQKEIFEQPESVV 268
+ D+A + +SI+ R++ +++ ++ KG + +FM KEI+EQPE++
Sbjct: 207 EGDIAKLTTDGVSINDGNVL------RDVPVIEWDLCAAEKGGFRHFMLKEIYEQPEALR 260
Query: 269 NTMRGRINFETNSVILGGIKRKIR 292
NT++GR++ + + I R++
Sbjct: 261 NTLQGRLDELVQNELDLDILREVD 284
>gnl|CDD|130205 TIGR01135, glmS, glucosamine--fructose-6-phosphate aminotransferase
(isomerizing). The member from Methanococcus jannaschii
contains an intein [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan,
Central intermediary metabolism, Amino sugars].
Length = 607
Score = 356 bits (917), Expect = e-114
Identities = 138/356 (38%), Positives = 218/356 (61%), Gaps = 8/356 (2%)
Query: 368 EYFFASDASAVIEHTNRVIFLEDDDVAAVKDGSLSIHRLRRSLDDPHGREITILKLEIQE 427
E F ASD +A++ T RVI+LED D+A + + I+ P RE+ + ++
Sbjct: 187 ENFVASDVTALLPVTRRVIYLEDGDIAILTRDGVRIYNFE---GAPVSREVRTIDWDLDA 243
Query: 428 IMKGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGCG 487
KG Y +FM KEI+EQP ++ +T+ GRI+ + G ++ ++ R+ ++ CG
Sbjct: 244 AEKGGYRHFMLKEIYEQPRALRDTLEGRISEAGVVLEELGAEE---LLKNVDRIQIVACG 300
Query: 488 TSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRY 547
TSYH+ + + L+E L +PV VE+AS+F R V +D + ISQSGETAD+L ALR
Sbjct: 301 TSYHAGLVAKYLIERLAGIPVEVEIASEFRYRKPVVDKDTLVIAISQSGETADTLAALRL 360
Query: 548 CKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCED 607
K GA +G+ N GS++ RES ++ AGPEIGVASTKA+T+Q L + AL + +
Sbjct: 361 AKELGAKTLGICNVPGSTLVRESDHTLYTRAGPEIGVASTKAFTTQLTVLYLLALKLAKA 420
Query: 608 RISLQTR-RNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGGYNYATCM 666
R +L E++ GL+ + + +VL+++ + +LA+ ++ + L +GR G Y +
Sbjct: 421 RGTLSAEEEAELVDGLRRLPALVEQVLKLEESIAELAERYADKHNFLFLGR-GLGYPIAL 479
Query: 667 EGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQV 722
EGALK+KE++Y+H+EG AGELKHGP+ALID +PV+ I +D ++ K + + +V
Sbjct: 480 EGALKLKEISYIHAEGYPAGELKHGPIALIDEGLPVVAIAPKDSLFEKTKSNVEEV 535
Score = 100 bits (251), Expect = 6e-22
Identities = 40/104 (38%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 4 IALDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEV 63
IA+ D + + K GKV L +L + VGI HTRWATHG P+E
Sbjct: 33 IAV--VDEGKLFVRKAVGKVQELA-------NKLGEKPLPGG-VGIGHTRWATHGKPTEE 82
Query: 64 NSHPQRSDIDQTFCVVHNGIVTNYKELKAFLTNKDHRPHGRSET 107
N+HP D VVHNGI+ NY EL+ L + H S+T
Sbjct: 83 NAHPHT-DEGGRIAVVHNGIIENYAELREELEARGHVFV--SDT 123
Score = 55.7 bits (135), Expect = 6e-08
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 209 DDDVAAVKDGSLSIHRLRRSLDDPHGREITILKLEIQEIMKGNYSYFMQKEIFEQPESVV 268
D D+A + + I+ P RE+ + ++ KG Y +FM KEI+EQP ++
Sbjct: 209 DGDIAILTRDGVRIYNFE---GAPVSREVRTIDWDLDAAEKGGYRHFMLKEIYEQPRALR 265
Query: 269 NTMRGRIN 276
+T+ GRI+
Sbjct: 266 DTLEGRIS 273
Score = 41.8 bits (99), Expect = 0.001
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 129 EYFFASDASAVIEHTNRVIFLE 150
E F ASD +A++ T RVI+LE
Sbjct: 187 ENFVASDVTALLPVTRRVIYLE 208
>gnl|CDD|240349 PTZ00295, PTZ00295, glucosamine-fructose-6-phosphate
aminotransferase; Provisional.
Length = 640
Score = 256 bits (657), Expect = 7e-76
Identities = 128/364 (35%), Positives = 199/364 (54%), Gaps = 24/364 (6%)
Query: 370 FFASDASAVIEHTNRVIFLEDDDVAAV-KDGSLSIHRLRRSLDDPHGREITILKLEIQEI 428
+ AS+ SA ++TN I L+D ++A + + ++ RR P E+ E
Sbjct: 220 YVASEPSAFAKYTNEYISLKDGEIAELSLENVNDLYTQRRVEKIPE---------EVIEK 270
Query: 429 MKGNYSYFMQKEIFEQPESVVNTM--RGRINFETNSVILGGIKDYIPEIRRCRRLMMIGC 486
Y ++ KEIFEQP ++ + GR++ N V LGG+ Y+ E+ + L+++GC
Sbjct: 271 SPEPYPHWTLKEIFEQPIALSRALNNGGRLSGYNNRVKLGGLDQYLEELLNIKNLILVGC 330
Query: 487 GTSYHSAVATRQLLEELTEL-PVMVELASDF-LDRNTPVFRDDVCF-FISQSGETADSLM 543
GTSY++A+ ++++L V V AS+ L R +D FISQSGET D +
Sbjct: 331 GTSYYAALFAASIMQKLKCFNTVQVIDASELTLYRLP---DEDAGVIFISQSGETLDVVR 387
Query: 544 ALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFAL- 602
AL + V NTVGS I+R + CG+++NAG E+ VASTKA+TSQ L + AL
Sbjct: 388 ALNLADELNLPKISVVNTVGSLIARSTDCGVYLNAGREVAVASTKAFTSQVTVLSLIALW 447
Query: 603 -VMCEDRISLQTRRNEIIKGLKVIHEQIREVLQM-DSEVQQLAKEMYEQKSMLLMGRGGY 660
++ + + +I L + I L+ + + +++A+++ KSM ++G+ G
Sbjct: 448 FAQNKEYSCSNYKCSSLINSLHRLPTYIGMTLKSCEEQCKRIAEKLKNAKSMFILGK-GL 506
Query: 661 NYATCMEGALKIKELTYMHSEGIMAGELKHGPLALID--NSMPVIMILTRDPVYVKCMNA 718
Y +EGALKIKE+TY+H+EG G LKHGP ALID + PVI+I+ D +NA
Sbjct: 507 GYPIALEGALKIKEITYIHAEGFSGGALKHGPFALIDKEKNTPVILIILDDEHKELMINA 566
Query: 719 LLQV 722
QV
Sbjct: 567 AEQV 570
Score = 93.2 bits (232), Expect = 1e-19
Identities = 78/268 (29%), Positives = 121/268 (45%), Gaps = 41/268 (15%)
Query: 32 TRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHNGIVTNYKELK 91
LKE ++ + +GIAHTRWATHG ++ N+HP D + +VHNG + NY ELK
Sbjct: 82 EILKEKLLDSHKNSTIGIAHTRWATHGGKTDENAHPH-CDYKKRIALVHNGTIENYVELK 140
Query: 92 AFLTNKDHRPHGRSETMPMLPRNDSTS--EFQPLEDKQVEYFFASDASAV--IEHTNRVI 147
+ L K RSET DS LE Q E F + SA+ ++ T +
Sbjct: 141 SELIAKG--IKFRSET-------DSEVIANLIGLELDQGEDFQEAVKSAISRLQGTWGLC 191
Query: 148 FLERFDRGNCNCQSLTVPKSKKERRQDRNKSAVLRTNLWDILLGLSSS--WAGIEPRGLI 205
+ + N SL V RN S +L+G+ + EP
Sbjct: 192 IIHK-----DNPDSLIVA---------RNGSP--------LLVGIGDDSIYVASEPSAFA 229
Query: 206 EGTDDDVAAVKDGSLSIHRLRRSLDDPHGREITILKLEIQEIMKGNYSYFMQKEIFEQPE 265
+ T++ + ++KDG ++ L D R + + E+ E Y ++ KEIFEQP
Sbjct: 230 KYTNEYI-SLKDGEIAELSLENVNDLYTQRRVEKIPEEVIEKSPEPYPHWTLKEIFEQPI 288
Query: 266 SVVNTM--RGRINFETNSVILGGIKRKI 291
++ + GR++ N V LGG+ + +
Sbjct: 289 ALSRALNNGGRLSGYNNRVKLGGLDQYL 316
>gnl|CDD|240141 cd05008, SIS_GlmS_GlmD_1, SIS (Sugar ISomerase) domain repeat 1
found in Glucosamine 6-phosphate synthase (GlmS) and
Glucosamine-6-phosphate deaminase (GlmD). The SIS domain
is found in many phosphosugar isomerases and
phosphosugar binding proteins. GlmS contains a
N-terminal glutaminase domain and two C-terminal SIS
domains and catalyzes the first step in hexosamine
metabolism, converting fructose 6-phosphate into
glucosamine 6-phosphate using glutamine as nitrogen
source. The glutaminase domain hydrolyzes glutamine to
glutamate and ammonia. Ammonia is transferred through a
channel to the isomerase domain for glucosamine
6-phosphate synthesis. The end product of the pathway is
N-acetylglucosamine, which plays multiple roles in
eukaryotic cells including being a building block of
bacterial and fungal cell walls. In the absence of
glutamine, GlmS catalyzes the isomerization of fructose
6-phosphate into glucose 6- phosphate (PGI-like
activity). Glucosamine-6-phosphate deaminase (GlmD)
contains two SIS domains and catalyzes the deamination
and isomerization of glucosamine-6-phosphate into
fructose-6-phosphate with the release of ammonia; in
presence of high ammonia concentration, GlmD can
catalyze the reverse reaction.
Length = 126
Score = 196 bits (502), Expect = 1e-59
Identities = 62/126 (49%), Positives = 90/126 (71%)
Query: 480 RLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETA 539
R++++GCGTSYH+A+ + LLE L +PV VE AS+F R + D + ISQSGETA
Sbjct: 1 RILIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPLLDEDTLVIAISQSGETA 60
Query: 540 DSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVM 599
D+L ALR K +GA V +TN VGS+++RE+ +++ AGPEI VA+TKA+TSQ ++L++
Sbjct: 61 DTLAALRLAKEKGAKTVAITNVVGSTLAREADYVLYLRAGPEISVAATKAFTSQLLALLL 120
Query: 600 FALVMC 605
AL +
Sbjct: 121 LALALA 126
>gnl|CDD|225132 COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope
biogenesis, outer membrane].
Length = 340
Score = 161 bits (410), Expect = 4e-44
Identities = 83/278 (29%), Positives = 134/278 (48%), Gaps = 19/278 (6%)
Query: 434 SYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGCGTSYHSA 493
S M +EI +QP V R L D++ R R++ +GCG+S H+A
Sbjct: 2 STLMLREIEQQPAVV---ARLLEANRAVLAELA---DFL-RKRGIDRILFVGCGSSLHAA 54
Query: 494 VATRQLLEELTELPVMVELASDFLDRNTPVF-RDDVCFFISQSGETADSLMALRYCKARG 552
+ LLE L V AS+FL D + SQSG T +S+ A K G
Sbjct: 55 TPAKYLLERELGLLVAAIPASEFLTNGAKYLGEDSLVIAFSQSGNTPESVAAAELAKEGG 114
Query: 553 ALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQ 612
AL + +TN S ++R + I AG E VA+TK++T+ ++L+ AL+ D +
Sbjct: 115 ALTIALTNEEDSPLARAADYVIPYLAGEEASVAATKSFTASLLALL--ALLAEYDGDAQL 172
Query: 613 TRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKI 672
L + + + L + + Q+ A+E ++ + +G G Y E ALK+
Sbjct: 173 LAA------LPDLPLEAAKAL--EEDAQEFAEEYADEDRIYTLGSGP-LYGAAYEAALKL 223
Query: 673 KELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDP 710
KE+ ++HSE I +GE +HGP L++ PV++ ++ D
Sbjct: 224 KEMQWIHSEAISSGEFRHGPKELVEEGTPVLLFVSEDE 261
>gnl|CDD|238366 cd00714, GFAT, Glutamine amidotransferases class-II
(Gn-AT)_GFAT-type. This domain is found at the
N-terminus of glucosamine-6P synthase (GlmS, or GFAT in
humans). The glutaminase domain catalyzes amide
nitrogen transfer from glutamine to the appropriate
substrate. In this process, glutamine is hydrolyzed to
glutamic acid and ammonia. In humans, GFAT catalyzes the
first and rate-limiting step of hexosamine metabolism,
the conversion of D-fructose-6P (Fru6P) into
D-glucosamine-6P using L-glutamine as a nitrogen source.
The end product of this pathway, UDP-N-acetyl
glucosamine, is a major building block of the bacterial
peptidoglycan and fungal chitin.
Length = 215
Score = 152 bits (386), Expect = 3e-42
Identities = 66/192 (34%), Positives = 86/192 (44%), Gaps = 61/192 (31%)
Query: 4 IALDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEV 63
IA+ + +VK GKV+ LE+++ E+ + HVGI HTRWATHG P++V
Sbjct: 33 IAVIGDGS--LEVVKAVGKVANLEEKLA--------EKPLSGHVGIGHTRWATHGEPTDV 82
Query: 64 NSHPQRSDIDQTFCVVHNGIVTNYKELKAFLTNKDHR----------PH----------- 102
N+HP RS D VVHNGI+ NY ELK L K ++ H
Sbjct: 83 NAHPHRSC-DGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHLIEYYYDGGLD 141
Query: 103 ---GRSETMPML-------------P------RNDSTSEFQPL--EDKQVEYFFASDASA 138
+ + L P RN S PL E F ASDA A
Sbjct: 142 LLEAVKKALKRLEGAYALAVISKDEPDEIVAARNGS-----PLVIGIGDGENFVASDAPA 196
Query: 139 VIEHTNRVIFLE 150
++EHT RVI+LE
Sbjct: 197 LLEHTRRVIYLE 208
Score = 60.5 bits (148), Expect = 2e-10
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 365 KQVEYFFASDASAVIEHTNRVIFLEDDDVAAV 396
E F ASDA A++EHT RVI+LED D+A +
Sbjct: 184 GDGENFVASDAPALLEHTRRVIYLEDGDIAVI 215
>gnl|CDD|216466 pfam01380, SIS, SIS domain. SIS (Sugar ISomerase) domains are
found in many phosphosugar isomerases and phosphosugar
binding proteins. SIS domains are also found in proteins
that regulate the expression of genes involved in
synthesis of phosphosugars. Presumably the SIS domains
bind to the end-product of the pathway.
Length = 131
Score = 131 bits (332), Expect = 6e-36
Identities = 56/130 (43%), Positives = 80/130 (61%), Gaps = 1/130 (0%)
Query: 474 EIRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRN-TPVFRDDVCFFI 532
++ + +R+ +IG GTSY +A+ LEE+ + V VE AS+F V DD+ I
Sbjct: 1 KLAKAKRIYVIGAGTSYAAALELALKLEEIGYIVVEVEDASEFRHGPLALVDPDDLVIAI 60
Query: 533 SQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTS 592
SQSGET D L A + KARGA I+ +T++ GS ++RE+ ++I AGPE GVASTK+ T
Sbjct: 61 SQSGETRDLLEAAKLLKARGAKIIAITDSKGSPLAREADHVLYIIAGPEAGVASTKSLTL 120
Query: 593 QFISLVMFAL 602
Q L A+
Sbjct: 121 QLALLDALAI 130
Score = 67.4 bits (165), Expect = 2e-13
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 645 EMYEQKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIM 704
++ + K + ++G G +YA +E ALK++E+ Y+ E A E +HGPLAL+D VI
Sbjct: 1 KLAKAKRIYVIGAG-TSYAAALELALKLEEIGYIVVEVEDASEFRHGPLALVDPDDLVIA 59
Query: 705 ILTRD 709
I
Sbjct: 60 ISQSG 64
>gnl|CDD|240142 cd05009, SIS_GlmS_GlmD_2, SIS (Sugar ISomerase) domain repeat 2
found in Glucosamine 6-phosphate synthase (GlmS) and
Glucosamine-6-phosphate deaminase (GlmD). The SIS domain
is found in many phosphosugar isomerases and
phosphosugar binding proteins. GlmS contains a
N-terminal glutaminase domain and two C-terminal SIS
domains and catalyzes the first step in hexosamine
metabolism, converting fructose 6-phosphate into
glucosamine 6-phosphate using glutamine as nitrogen
source. The glutaminase domain hydrolyzes glutamine to
glutamate and ammonia. Ammonia is transferred through a
channel to the isomerase domain for glucosamine
6-phosphate synthesis. The end product of the pathway is
N-acetylglucosamine, which plays multiple roles in
eukaryotic cells including being a building block of
bacterial and fungal cell walls. In the absence of
glutamine, GlmS catalyzes the isomerization of fructose
6-phosphate into glucose 6- phosphate (PGI-like
activity). Glucosamine-6-phosphate deaminase (GlmD)
contains two SIS domains and catalyzes the deamination
and isomerization of glucosamine-6-phosphate into
fructose-6-phosphate with the release of ammonia; in
presence of high ammonia concentration, GlmD can
catalyze the reverse reaction.
Length = 153
Score = 119 bits (300), Expect = 2e-31
Identities = 37/85 (43%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Query: 638 EVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALID 697
++++LA+++ E KS ++GRG NY T +EGALK+KE +Y+H+E AGE KHGP+AL+D
Sbjct: 2 DIKELAEKLKEAKSFYVLGRG-PNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIALVD 60
Query: 698 NSMPVIMILTRDPVYVKCMNALLQV 722
PVI + D + K + + +V
Sbjct: 61 EGTPVIFLAPEDRLEEKLESLIKEV 85
>gnl|CDD|238212 cd00352, Gn_AT_II, Glutamine amidotransferases class-II (GATase).
The glutaminase domain catalyzes an amide nitrogen
transfer from glutamine to the appropriate substrate. In
this process, glutamine is hydrolyzed to glutamic acid
and ammonia. This domain is related to members of the
Ntn (N-terminal nucleophile) hydrolase superfamily and
is found at the N-terminus of enzymes such as
glucosamine-fructose 6-phosphate synthase (GLMS or
GFAT), glutamine phosphoribosylpyrophosphate (Prpp)
amidotransferase (GPATase), asparagine synthetase B
(AsnB), beta lactam synthetase (beta-LS) and glutamate
synthase (GltS). GLMS catalyzes the formation of
glucosamine 6-phosphate from fructose 6-phosphate and
glutamine in amino sugar synthesis. GPATase catalyzes
the first step in purine biosynthesis, an amide transfer
from glutamine to PRPP, resulting in
phosphoribosylamine, pyrophosphate and glutamate.
Asparagine synthetase B synthesizes asparagine from
aspartate and glutamine. Beta-LS catalyzes the formation
of the beta-lactam ring in the beta-lactamase inhibitor
clavulanic acid. GltS synthesizes L-glutamate from
2-oxoglutarate and L-glutamine. These enzymes are
generally dimers, but GPATase also exists as a
homotetramer.
Length = 220
Score = 87.5 bits (217), Expect = 2e-19
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 10 DGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQR 69
DG IA+ G + + ++E + V + H R AT+G PSE N+ P R
Sbjct: 33 DGAGIAVYDGDGLFVEKRAGPVSDVALDLLDEPLKSGVALGHVRLATNGLPSEANAQPFR 92
Query: 70 SDIDQTFCVVHNGIVTNYKELKAFLTNKDHRPHGRSET 107
S+ D +VHNG + NY+EL+ L + +R G S++
Sbjct: 93 SE-DGRIALVHNGEIYNYRELREELEARGYRFEGESDS 129
Score = 29.0 bits (65), Expect = 7.3
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 361 PL---EDKQVEYFFASDASAVIEHT-NRVIFLEDDDVA 394
PL K FAS+ A++ V L ++
Sbjct: 183 PLYYGITKDGGLVFASEPKALLALPFKGVRRLPPGELL 220
>gnl|CDD|215851 pfam00310, GATase_2, Glutamine amidotransferases class-II.
Length = 223
Score = 70.1 bits (172), Expect = 2e-13
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 45 THVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHNGIVTNYKELKAFLTNKDHR 100
+ + I HTR++T+G PS N+HP R + + + HNG + + L+ ++ ++
Sbjct: 85 SALAIVHTRFSTNGFPSWENAHPFRRE---GWVLAHNGEINTLRGLRNWMRAREGV 137
>gnl|CDD|240214 cd05710, SIS_1, A subgroup of the SIS domain. SIS (Sugar ISomerase)
domains are found in many phosphosugar isomerases and
phosphosugar binding proteins. SIS domains are also
found in proteins that regulate the expression of genes
involved in synthesis of phosphosugars.
Length = 120
Score = 66.1 bits (162), Expect = 5e-13
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 480 RLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDD-VCFFISQSGET 538
+ +GCG S + L++ ++LPV V A++FL + V S SG T
Sbjct: 1 NVFFVGCGGSLADMYPAKYFLKKESKLPVFVYNAAEFLHTGPKRLTEKSVVILASHSGNT 60
Query: 539 ADSLMALRYCKARGALIVGVTNTVGSSISRESH 571
+++ A ++ K +GA ++G+T+ S +++ +
Sbjct: 61 KETVAAAKFAKEKGATVIGLTDDEDSPLAKLAD 93
>gnl|CDD|240112 cd04795, SIS, SIS domain. SIS (Sugar ISomerase) domains are found
in many phosphosugar isomerases and phosphosugar binding
proteins. SIS domains are also found in proteins that
regulate the expression of genes involved in synthesis
of phosphosugars.
Length = 87
Score = 55.5 bits (134), Expect = 9e-10
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 484 IGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVF--RDDVCFFISQSGETADS 541
IG G S A L ELT + V+ +A++ + + DV +S SG T +
Sbjct: 4 IGIGGSGAIAAYFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRTEEL 63
Query: 542 LMALRYCKARGALIVGVT 559
L AL K G ++ +T
Sbjct: 64 LAALEIAKELGIPVIAIT 81
>gnl|CDD|183111 PRK11382, frlB, fructoselysine-6-P-deglycase; Provisional.
Length = 340
Score = 59.2 bits (143), Expect = 2e-09
Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 19/240 (7%)
Query: 476 RRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFI--S 533
R R+ + CG+ ++A + L + ++L V +F D NTP DD C I S
Sbjct: 42 RDIDRIYFVACGSPLNAAQTAKHLADRFSDLQVYAISGWEFCD-NTPYRLDDRCAVIGVS 100
Query: 534 QSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQ 593
G+T + + AL +A GAL T S I+ + E + +
Sbjct: 101 DYGKTEEVIKALELGRACGALTAAFTKRADSPITSAA----------EFSIDYQADCIWE 150
Query: 594 FISLVMFALVMCEDRISLQTRRNEIIK---GLKVIHEQIREVLQM-DSEVQQLAKEMYEQ 649
L+ +++V+ + I+ EI K LK + + +++ + + +QL + +
Sbjct: 151 IHLLLCYSVVL--EMITRLAPNAEIGKIKNDLKQLPNALGHLVRTWEEKGRQLGELASQW 208
Query: 650 KSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRD 709
+ + G EG + + E T+ H I +GE +HGPL +++ +P + +L D
Sbjct: 209 PMIYTVAAGPLRPLGYKEGIVTLMEFTWTHGCVIESGEFRHGPLEIVEPGVPFLFLLGND 268
>gnl|CDD|240144 cd05013, SIS_RpiR, RpiR-like protein. RpiR contains a SIS (Sugar
ISomerase) domain, which is found in many phosphosugar
isomerases and phosphosugar binding proteins. In E.
coli, rpiR negatively regulates the expression of rpiB
gene. Both rpiB and rpiA are ribose phosphate isomerases
that catalyze the reversible reactions of ribose
5-phosphate into ribulose 5-phosphate.
Length = 139
Score = 53.8 bits (130), Expect = 1e-08
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 9/135 (6%)
Query: 475 IRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASD---FLDRNTPVFRDDVCFF 531
+ + RR+ + G G+S A L +L L V L SD L + DV
Sbjct: 10 LAKARRIYIFGVGSSGLVA---EYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIA 66
Query: 532 ISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYT 591
IS SGET +++ A K RGA ++ +T++ S +++ + I + E G + A++
Sbjct: 67 ISFSGETKETVEAAEIAKERGAKVIAITDSANSPLAKLAD--IVLLVSSEEGDFRSSAFS 124
Query: 592 SQFISLVMF-ALVMC 605
S+ L + AL +
Sbjct: 125 SRIAQLALIDALFLA 139
>gnl|CDD|240145 cd05014, SIS_Kpsf, KpsF-like protein. KpsF is an
arabinose-5-phosphate isomerase which contains SIS
(Sugar ISomerase) domains. SIS domains are found in many
phosphosugar isomerases and phosphosugar binding
proteins. KpsF catalyzes the reversible reaction of
ribulose 5-phosphate to arabinose 5-phosphate. This is
the second step in the CMP-Kdo biosynthesis pathway.
Length = 128
Score = 52.5 bits (127), Expect = 3e-08
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 525 RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESH----CGIHINAGP 580
DV IS SGET + L L + K RGA I+ +T S++++ S + A P
Sbjct: 47 PGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDLPVEEEACP 106
Query: 581 EIGVASTKAYTSQFISLVMF-ALVMC 605
+G+A T TS L + AL +
Sbjct: 107 -LGLAPT---TSTTAMLALGDALAVA 128
>gnl|CDD|222195 pfam13522, GATase_6, Glutamine amidotransferase domain. This
domain is a class-II glutamine amidotransferase domain
found in a variety of enzymes, such as asparagine
synthetase and glutamine--fructose-6-phosphate
transaminase.
Length = 130
Score = 52.3 bits (126), Expect = 3e-08
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 46 HVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHNGIVTNYKELKAFLTNKDHRPHGRS 105
+ + H R A P S D +VHNG + N+ EL+ L K H RS
Sbjct: 11 GIALGHVRLAIVDLSEAGA-QPMLSA-DGRLVLVHNGEIYNFGELREELPAKGHAFRSRS 68
Query: 106 ET 107
++
Sbjct: 69 DS 70
>gnl|CDD|240140 cd05007, SIS_Etherase, N-acetylmuramic acid 6-phosphate etherase.
Members of this family contain the SIS (Sugar ISomerase)
domain. The SIS domain is found in many phosphosugar
isomerases and phosphosugar binding proteins. The
bacterial cell wall sugar N-acetylmuramic acid carries a
unique D-lactyl ether substituent at the C3 position.
The etherase catalyzes the cleavage of the lactyl ether
bond of N-acetylmuramic acid 6-phosphate.
Length = 257
Score = 54.8 bits (133), Expect = 4e-08
Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 513 ASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHC 572
A+D N DV I+ SG T L ALRY +ARGAL +G+ GS + + +
Sbjct: 108 AADLQAINLT--ERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLADI 165
Query: 573 GIHINAGPEIGVAST--KAYTSQFISLVMFA-LVM 604
I + GPE+ ST KA T+Q ++L M + VM
Sbjct: 166 AIALITGPEVVAGSTRLKAGTAQKLALNMLSTAVM 200
>gnl|CDD|235467 PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase;
Reviewed.
Length = 299
Score = 54.4 bits (132), Expect = 7e-08
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 532 ISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVAST--KA 589
I+ SG T + AL Y + RGAL +G++ GS +S+E+ I + GPE+ ST KA
Sbjct: 138 IAASGRTPYVIGALEYARERGALTIGISCNPGSPLSKEADIAIEVVVGPEVLTGSTRMKA 197
Query: 590 YTSQFISLVMFA-LVM 604
T+Q + L M + VM
Sbjct: 198 GTAQKLVLNMISTGVM 213
>gnl|CDD|223865 COG0794, GutQ, Predicted sugar phosphate isomerase involved in
capsule formation [Cell envelope biogenesis, outer
membrane].
Length = 202
Score = 51.9 bits (125), Expect = 2e-07
Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 15/139 (10%)
Query: 479 RRLMMIGCGTSYH--SAVATRQLLEELTELPVMVELASDFLDRNTPVF-RDDVCFFISQS 535
++ + G G S A R L T P ++ L + + DV IS S
Sbjct: 40 GKVFVTGVGKSGLIGKKFAAR-LAS--TGTPAFFVGPAEALHGDLGMITPGDVVIAISGS 96
Query: 536 GETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE---IGVASTKAYTS 592
GET + L K GA ++ +T+ SS+++ + + I E +G+A T TS
Sbjct: 97 GETKELLNLAPKAKRLGAKLIAITSNPDSSLAKAADVVLVIPVKTEACPLGLAPT---TS 153
Query: 593 QFISLVMF-ALVMC--EDR 608
++L + AL E R
Sbjct: 154 TTLTLALGDALAGTLFEAR 172
>gnl|CDD|225014 COG2103, COG2103, Predicted sugar phosphate isomerase [General
function prediction only].
Length = 298
Score = 52.7 bits (127), Expect = 3e-07
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 526 DDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVA 585
DV I+ SG T + AL Y + RGA +G+ GS+ISR + I GPE+
Sbjct: 130 KDVVVGIAASGRTPYVIGALEYARQRGATTIGIACNPGSAISRIADIAIEPVVGPEVLTG 189
Query: 586 ST--KAYTSQFISLVMF 600
ST KA T+Q + L M
Sbjct: 190 STRLKAGTAQKLVLNML 206
>gnl|CDD|222208 pfam13537, GATase_7, Glutamine amidotransferase domain. This
domain is a class-II glutamine amidotransferase domain
found in a variety of enzymes such as asparagine
synthetase and glutamine-fructose-6-phosphate
transaminase.
Length = 120
Score = 49.0 bits (118), Expect = 3e-07
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 51 HTRWATHGAPSEVNSHPQRSDIDQTFCVVHNGIVTNYKELKAFLTNKDHRPHGRSETMPM 110
H R + + + P S+ D + +V NG + NY+EL+A L K +R S+T +
Sbjct: 1 HRRLSIDDSEG--GAQPMVSE-DGRYVIVFNGEIYNYRELRAELEAKGYRFRTHSDTEVI 57
Query: 111 LP 112
L
Sbjct: 58 LH 59
>gnl|CDD|224651 COG1737, RpiR, Transcriptional regulators [Transcription].
Length = 281
Score = 48.1 bits (115), Expect = 7e-06
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 525 RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESH 571
DV IS SG T + + A K RGA ++ +T++ S +++ +
Sbjct: 177 PGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLAD 223
>gnl|CDD|223112 COG0034, PurF, Glutamine phosphoribosylpyrophosphate
amidotransferase [Nucleotide transport and metabolism].
Length = 470
Score = 47.6 bits (114), Expect = 2e-05
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 8/100 (8%)
Query: 9 ADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHP- 67
ADG K G VS E ++ +VGI H R++T G+ S N+ P
Sbjct: 42 ADGKRFHTHKGMGLVS-------DVFNERDLLRKLQGNVGIGHVRYSTAGSSSIENAQPF 94
Query: 68 QRSDIDQTFCVVHNGIVTNYKELKAFLTNKDHRPHGRSET 107
+ + HNG + N +EL+ L + + S++
Sbjct: 95 YVNSPGGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDS 134
>gnl|CDD|129375 TIGR00274, TIGR00274, N-acetylmuramic acid 6-phosphate etherase.
This protein, MurQ, is involved in recycling components
of the bacterial murein sacculus turned over during cell
growth. The cell wall metabolite anhydro-N-acetylmuramic
acid (anhMurNAc) is converted by a kinase, AnmK, to
MurNAc-phosphate, then converted to
N-acetylglucosamine-phosphate by this etherase, called
MurQ. This family of proteins is similar to the
C-terminal half of a number of vertebrate glucokinase
regulator proteins and contains a Prosite pattern which
is shared by this group of proteins in a region of local
similarity [Cell envelope, Biosynthesis and degradation
of murein sacculus and peptidoglycan].
Length = 291
Score = 45.2 bits (107), Expect = 7e-05
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 519 RNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINA 578
+N + ++DV I+ SG T + L+Y ++ GAL + + S+ S + I
Sbjct: 120 QNIHLTKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAASEIADIAIETIV 179
Query: 579 GPEIGVAST--KAYTSQFISLVM 599
GPEI S+ KA T+Q + L M
Sbjct: 180 GPEILTGSSRLKAGTAQKMVLNM 202
>gnl|CDD|238367 cd00715, GPATase_N, Glutamine amidotransferases class-II
(GN-AT)_GPAT- type. This domain is found at the
N-terminus of glutamine phosphoribosylpyrophosphate
(Prpp) amidotransferase (GPATase) . The glutaminase
domain catalyzes amide nitrogen transfer from glutamine
to the appropriate substrate. In this process, glutamine
is hydrolyzed to glutamic acid and ammonia. GPATase
catalyzes the first step in purine biosynthesis, an
amide transfer from glutamine to PRPP, resulting in
phosphoribosylamine, pyrophosphate and glutamate.
GPATase crystalizes as a homotetramer, but can also
exist as a homdimer.
Length = 252
Score = 44.8 bits (107), Expect = 7e-05
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 8 AADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHP 67
+DG K G VS + DE +L+ L ++ I H R++T G+ S N+ P
Sbjct: 35 TSDGKRFHTHKGMGLVSDVFDE--EKLRRLP------GNIAIGHVRYSTAGSSSLENAQP 86
Query: 68 QRSDIDQ-TFCVVHNGIVTNYKELKAFLTNKDH 99
+ + HNG + N KEL+ L +
Sbjct: 87 FVVNSPLGGIALAHNGNLVNAKELREELEEEGR 119
>gnl|CDD|131862 TIGR02815, agaS_fam, putative sugar isomerase, AgaS family. Some
members of this protein family are found in regions
associated with N-acetyl-galactosamine and galactosamine
untilization and are suggested to be isomerases.
Length = 372
Score = 44.0 bits (104), Expect = 2e-04
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 9/124 (7%)
Query: 589 AYTSQFISLVMFALVMCEDRISLQTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYE 648
A TS F + + L + + +T ++ + I E Q D L +E
Sbjct: 160 AMTSSFSCMTLATLAV----LGPETIESQTEERFADAALCILESGQWDFSEGVLGYAPWE 215
Query: 649 QKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGEL--KHGPLALIDNSMPVIMIL 706
+ ++ +G GG E ALK+ ELT L +HGP +L+D+ V++ +
Sbjct: 216 R--IVYLGSGGLQGLA-RESALKVLELTAGKVMAFYDSSLGFRHGPKSLVDDETLVVVYV 272
Query: 707 TRDP 710
+ DP
Sbjct: 273 SSDP 276
>gnl|CDD|238888 cd01907, GlxB, Glutamine amidotransferases class-II
(Gn-AT)_GlxB-type. GlxB is a glutamine
amidotransferase-like protein of unknown function found
in bacteria and archaea. GlxB has a structural fold
similar to that of other class II glutamine
amidotransferases including glucosamine-fructose
6-phosphate synthase (GLMS or GFAT), glutamine
phosphoribosylpyrophosphate (Prpp) amidotransferase
(GPATase), asparagine synthetase B (AsnB), beta lactam
synthetase (beta-LS) and glutamate synthase (GltS).
The GlxB fold is also somewhat similar to the Ntn
(N-terminal nucleophile) hydrolase fold of the
proteasomal alpha and beta subunits.
Length = 249
Score = 42.3 bits (100), Expect = 4e-04
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Query: 11 GVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHP-QR 69
G D+ + K G ++I R +EE H IAHTR T+ A +HP
Sbjct: 51 GKDMEVFKGVG----YPEDIARRYD---LEEYKGYH-WIAHTRQPTNSAVWWYGAHPFSI 102
Query: 70 SDIDQTFCVVHNGIVTNYKELKAFL 94
DI VVHNG ++NY + +L
Sbjct: 103 GDI----AVVHNGEISNYGSNREYL 123
>gnl|CDD|236113 PRK07847, PRK07847, amidophosphoribosyltransferase; Provisional.
Length = 510
Score = 42.7 bits (101), Expect = 7e-04
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 10/103 (9%)
Query: 9 ADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHP- 67
+DG I + K G VS + DE QT L S HV I H R++T GA + N+ P
Sbjct: 60 SDGSQILVFKDLGLVSQVFDE-QT----LA---SLQGHVAIGHCRYSTTGASTWENAQPT 111
Query: 68 -QRSDIDQTFCVVHNGIVTNYKELKAFLTNKDHRPHGRSETMP 109
+ + + HNG + N EL A ++
Sbjct: 112 FRATAAGGGVALGHNGNLVNTAELAARARDRGLIRGRDPAGAT 154
>gnl|CDD|238364 cd00712, AsnB, Glutamine amidotransferases class-II (GATase)
asparagine synthase_B type. Asparagine synthetase B
catalyses the ATP-dependent conversion of aspartate to
asparagine. This enzyme is a homodimer, with each
monomer composed of a glutaminase domain and a
synthetase domain. The N-terminal glutaminase domain
hydrolyzes glutamine to glutamic acid and ammonia.
Length = 220
Score = 40.6 bits (96), Expect = 0.001
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 11/66 (16%)
Query: 46 HVGIAHTRWA----THGAPSEVNSHPQRSDIDQTFCVVHNGIVTNYKELKAFLTNKDHRP 101
V + H R + + GA P S+ D +V NG + NY+EL+A L HR
Sbjct: 41 GVALGHRRLSIIDLSGGA------QPMVSE-DGRLVLVFNGEIYNYRELRAELEALGHRF 93
Query: 102 HGRSET 107
S+T
Sbjct: 94 RTHSDT 99
>gnl|CDD|215241 PLN02440, PLN02440, amidophosphoribosyltransferase.
Length = 479
Score = 41.6 bits (98), Expect = 0.001
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 46 HVGIAHTRWATHGAPSEVNSHPQRSDIDQ-TFCVVHNGIVTNYKELKAFLTNK 97
+ I H R++T GA S N P ++ + V HNG + NY+EL+A L
Sbjct: 66 DIAIGHVRYSTAGASSLKNVQPFVANYRFGSIGVAHNGNLVNYEELRAKLEEN 118
>gnl|CDD|238889 cd01908, YafJ, Glutamine amidotransferases class-II
(Gn-AT)_YafJ-type. YafJ is a glutamine
amidotransferase-like protein of unknown function found
in prokaryotes, eukaryotes and archaea. YafJ has a
conserved structural fold similar to those of other
class II glutamine amidotransferases including
lucosamine-fructose 6-phosphate synthase (GLMS or GFAT),
glutamine phosphoribosylpyrophosphate (Prpp)
amidotransferase (GPATase), asparagine synthetase B
(AsnB), beta lactam synthetase (beta-LS) and glutamate
synthase (GltS). The YafJ fold is also somwhat similar
to the Ntn (N-terminal nucleophile) hydrolase fold of
the proteasomal alpha and beta subunits.
Length = 257
Score = 40.5 bits (95), Expect = 0.002
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 45 THVGIAHTRWATHGAPSEVNSHP-QRSDIDQTFCVVHNGIVTNYKELKAFLTNKD-HRPH 102
+ + +AH R AT G S N HP R F HNG + ++ L+ L P
Sbjct: 80 SPLVLAHVRAATVGPVSLENCHPFTRGRW--LF--AHNGQLDGFRLLRRRLLRLLPRLPV 135
Query: 103 GR--SE 106
G SE
Sbjct: 136 GTTDSE 141
>gnl|CDD|223199 COG0121, COG0121, Predicted glutamine amidotransferase [General
function prediction only].
Length = 252
Score = 40.4 bits (95), Expect = 0.002
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 46 HVGIAHTRWATHGAPSEVNSHP-QRSDIDQTFCVVHNGIVTNYKEL 90
+ IAH R AT G S N+HP R + HNG + +K L
Sbjct: 71 ELVIAHVRKATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKLL 116
>gnl|CDD|181456 PRK08525, PRK08525, amidophosphoribosyltransferase; Provisional.
Length = 445
Score = 40.9 bits (96), Expect = 0.002
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Query: 8 AADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHP 67
++G I +K G V+ + +E LK L E + I H R++T G S +++ P
Sbjct: 36 VSNGKKIKTIKGRGLVTQVFNE--DNLKTLKGEIA------IGHNRYSTAGNDSILDAQP 87
Query: 68 --QRSDIDQTFCVVHNGIVTNYKELKAFLTNK 97
R D+ + +VHNG + N KE+++ L
Sbjct: 88 VFARYDLGE-IAIVHNGNLVNKKEVRSRLIQD 118
>gnl|CDD|236427 PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional.
Length = 501
Score = 40.9 bits (97), Expect = 0.002
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 16/63 (25%)
Query: 46 HVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCV--------VHNGIVTNYKELKAFLTNK 97
++GI H R+ T G+ S + P F V HNG +TN +EL+ L K
Sbjct: 66 NMGIGHVRYPTAGSSSSAEAQP--------FYVNSPYGITLAHNGNLTNAEELRKELFEK 117
Query: 98 DHR 100
D R
Sbjct: 118 DRR 120
>gnl|CDD|237142 PRK12570, PRK12570, N-acetylmuramic acid-6-phosphate etherase;
Reviewed.
Length = 296
Score = 39.7 bits (93), Expect = 0.004
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 526 DDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVA 585
DDV I+ SG T + AL Y K GA + ++ S I++ + I GPE+
Sbjct: 128 DDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSPIAKIADIAISPVVGPEVLTG 187
Query: 586 ST--KAYTSQFISLVMF 600
ST K+ T+Q + L M
Sbjct: 188 STRLKSGTAQKMVLNML 204
>gnl|CDD|222238 pfam13580, SIS_2, SIS domain. SIS (Sugar ISomerase) domains are
found in many phosphosugar isomerases and phosphosugar
binding proteins. SIS domains are also found in proteins
that regulate the expression of genes involved in
synthesis of phosphosugars.
Length = 138
Score = 37.5 bits (88), Expect = 0.005
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 10/72 (13%)
Query: 499 LLEELTELPVMVELASDFLDRN----TPVFRD------DVCFFISQSGETADSLMALRYC 548
LL +L AS+ L+R+ + R DV IS SG A + A
Sbjct: 67 LLPDLALHEGAPTTASNDLERDEGYARQILRLYDIRPGDVLIVISNSGRNAVPIEAALAA 126
Query: 549 KARGALIVGVTN 560
K RG ++ +T+
Sbjct: 127 KERGMKVIALTS 138
>gnl|CDD|233285 TIGR01134, purF, amidophosphoribosyltransferase. Alternate name:
glutamine phosphoribosylpyrophosphate (PRPP)
amidotransferase [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 442
Score = 38.8 bits (91), Expect = 0.011
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 8 AADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHP 67
+DG I K +G VS + DE L+ L +VGI H R++T G+ S N+ P
Sbjct: 36 VSDGNKIRTHKGNGLVSDVFDE--RHLERL------KGNVGIGHVRYSTAGSSSLSNAQP 87
Query: 68 QRSDIDQTFCVVHNGIVTNYKELKAFLTNKDH 99
+ + HNG + N +EL+ L +
Sbjct: 88 FVVNSPGGIALAHNGNLVNAEELREELEEEGR 119
>gnl|CDD|183089 PRK11337, PRK11337, DNA-binding transcriptional repressor RpiR;
Provisional.
Length = 292
Score = 37.8 bits (88), Expect = 0.013
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 526 DDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESH 571
DV +S SG T+D + A+ K GA I+ +TN+ S I++ +
Sbjct: 188 GDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLAD 233
>gnl|CDD|221994 pfam13230, GATase_4, Glutamine amidotransferases class-II. This
family captures members that are not found in pfam00310.
Length = 272
Score = 37.6 bits (88), Expect = 0.017
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 49 IAHTRWATHGAPSEVNSHP-QRSDIDQTFCVVHNGIVTNYK 88
IAH R AT G + N+HP R + + HNG + +K
Sbjct: 75 IAHIRKATQGDVTLENTHPFMRELWGRHWIFAHNGDLKGFK 115
>gnl|CDD|223145 COG0067, GltB, Glutamate synthase domain 1 [Amino acid transport
and metabolism].
Length = 371
Score = 36.5 bits (85), Expect = 0.044
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 45 THVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHNGIVTNYK 88
+ + + HTR++T+ PS +HP R +VHNG + Y
Sbjct: 202 SAIALVHTRFSTNTFPSWPLAHPFRL-------LVHNGEINTYG 238
>gnl|CDD|185431 PTZ00077, PTZ00077, asparagine synthetase-like protein;
Provisional.
Length = 586
Score = 36.2 bits (84), Expect = 0.068
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 73 DQTFCVVHNGIVTNYKELKAFLTNKDH--RPHGRSETMPML 111
D+T ++ NG + N+ E++ L + + + E + L
Sbjct: 72 DETVALMQNGEIYNHWEIRPELEKEGYKFSSNSDCEIIGHL 112
>gnl|CDD|102351 PRK06388, PRK06388, amidophosphoribosyltransferase; Provisional.
Length = 474
Score = 34.9 bits (80), Expect = 0.14
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 10 DGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQR 69
DG I + K G V+ + + + VG+ HTR++T G+ N+ P
Sbjct: 56 DGRKIHLKKGMGLVTDVFN---------PATDPIKGIVGVGHTRYSTAGSKGVENAGPFV 106
Query: 70 SDIDQTFC-VVHNGIVTNYKELKAFLTNKDHRPHGRSETMPML 111
+ + + HNG + N EL+ + + + S+T ML
Sbjct: 107 INSSLGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVML 149
>gnl|CDD|240138 cd05005, SIS_PHI, Hexulose-6-phosphate isomerase (PHI). PHI is a
member of the SIS (Sugar ISomerase domain) superfamily.
In the ribulose monophosphate pathway of formaldehyde
fixation, hexulose-6-phosphate synthase catalyzes the
condensation of ribulose-5-phosphate with formadelhyde
to become hexulose-6-phosphate, which is then isomerized
to fructose-6-phosphate by PHI.
Length = 179
Score = 33.7 bits (78), Expect = 0.18
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 520 NTPVF-RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINA 578
TP D+ IS SGET+ + A K GA +V +T+ S +++ + + I A
Sbjct: 69 TTPAIGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVIPA 128
>gnl|CDD|240148 cd05017, SIS_PGI_PMI_1, The members of this protein family contain
the SIS (Sugar ISomerase) domain and have both the
phosphoglucose isomerase (PGI) and the phosphomannose
isomerase (PMI) functions. These functions catalyze the
reversible reactions of glucose 6-phosphate to fructose
6-phosphate, and mannose 6-phosphate to fructose
6-phosphate, respectively at an equal rate. This protein
contains two SIS domains. This alignment is based on the
first SIS domain.
Length = 119
Score = 32.6 bits (75), Expect = 0.18
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 485 GCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMA 544
G G S LL + ++PV V + L V R + +S SG T ++L A
Sbjct: 6 GMGGSGIGGDLLESLLLDEAKIPVYV-VKDYTLPA--FVDRKTLVIAVSYSGNTEETLSA 62
Query: 545 LRYCKARGALIVGVT 559
+ K RGA IV +T
Sbjct: 63 VEQAKERGAKIVAIT 77
>gnl|CDD|235611 PRK05793, PRK05793, amidophosphoribosyltransferase; Provisional.
Length = 469
Score = 34.6 bits (80), Expect = 0.21
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 9 ADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQ 68
+DG I + K G VS + + + LK L + I H R++T GA N+ P
Sbjct: 52 SDGEKIKVHKGMGLVSEVFSKEK--LKGLK------GNSAIGHVRYSTTGASDLDNAQPL 103
Query: 69 RSDIDQ-TFCVVHNGIVTNYKELKAFL 94
++ + + HNG + N ++ L
Sbjct: 104 VANYKLGSIAIAHNGNLVNADVIRELL 130
>gnl|CDD|180193 PRK05675, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 570
Score = 34.0 bits (78), Expect = 0.27
Identities = 17/74 (22%), Positives = 35/74 (47%)
Query: 202 RGLIEGTDDDVAAVKDGSLSIHRLRRSLDDPHGREITILKLEIQEIMKGNYSYFMQKEIF 261
+ L EG + A+ D ++ RL + + G ++ L+ E+Q M+ + F E
Sbjct: 403 KALKEGIEYRDASESDIDAALARLNKLNERTGGEDVAALRRELQSCMQNYFGVFRTGEYM 462
Query: 262 EQPESVVNTMRGRI 275
++ + + +R RI
Sbjct: 463 QKGIAQLADLRERI 476
Score = 29.8 bits (67), Expect = 7.0
Identities = 14/63 (22%), Positives = 30/63 (47%)
Query: 394 AAVKDGSLSIHRLRRSLDDPHGREITILKLEIQEIMKGNYSYFMQKEIFEQPESVVNTMR 453
A+ D ++ RL + + G ++ L+ E+Q M+ + F E ++ + + +R
Sbjct: 414 ASESDIDAALARLNKLNERTGGEDVAALRRELQSCMQNYFGVFRTGEYMQKGIAQLADLR 473
Query: 454 GRI 456
RI
Sbjct: 474 ERI 476
>gnl|CDD|132171 TIGR03127, RuMP_HxlB, 6-phospho 3-hexuloisomerase. Members of this
protein family are 6-phospho 3-hexuloisomerase (PHI), or
the PHI domain of a fusion protein. This enzyme is part
of the ribulose monophosphate (RuMP) pathway, which in
one direction removes the toxic metabolite formaldehyde
by assimilation into fructose-6-phosphate. In the other
direction, in species lacking a complete pentose
phosphate pathway, the RuMP pathway yields
ribulose-5-phosphate, necessary for nucleotide
biosynthesis, at the cost of also yielding formaldehyde.
These latter species tend usually have a
formaldehyde-activating enzyme to attach formaldehyde to
the C1 carrier tetrahydromethanopterin.
Length = 179
Score = 32.7 bits (75), Expect = 0.43
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 521 TPVFR-DDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISR 568
TP + D+ IS SGET + + K GA + +T S++ +
Sbjct: 67 TPSIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPESTLGK 115
>gnl|CDD|179510 PRK02947, PRK02947, hypothetical protein; Provisional.
Length = 246
Score = 32.5 bits (75), Expect = 0.58
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 512 LASDFLDRNTPVFRDDVCFFISQSGETADSL-MALRYCKARGALIVGVTN 560
A LDR + DV +S SG + MAL K RGA ++ VT+
Sbjct: 94 YAKAILDR-YDIRPGDVLIVVSNSGRNPVPIEMAL-EAKERGAKVIAVTS 141
>gnl|CDD|181395 PRK08341, PRK08341, amidophosphoribosyltransferase; Provisional.
Length = 442
Score = 32.5 bits (74), Expect = 0.78
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 38 NVEESSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHNGIVTNYKELKAFLTNK 97
+++ I H R++T G+ SEV + HNG +TN+ L+ ++
Sbjct: 59 GSLSRLKSNLAIGHVRYSTSGSLSEVQPLEVEC-CGYKIAIAHNGTLTNFLPLRRKYESR 117
Query: 98 DHRPHGRSET 107
+ +T
Sbjct: 118 GVKFRSSVDT 127
>gnl|CDD|181536 PRK08674, PRK08674, bifunctional phosphoglucose/phosphomannose
isomerase; Validated.
Length = 337
Score = 31.9 bits (73), Expect = 1.1
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 474 EIRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFI- 532
++ + +++ G G S R LL + ++PV V D P F D+ I
Sbjct: 30 DLEKIDNIVISGMGGSGIGGDLLRILLFDELKVPVFV-----NRDYTLPAFVDEKTLVIA 84
Query: 533 -SQSGETADSLMALRYCKARGALIVGVT 559
S SG T ++L A+ RGA I+ +T
Sbjct: 85 VSYSGNTEETLSAVEQALKRGAKIIAIT 112
>gnl|CDD|235998 PRK07349, PRK07349, amidophosphoribosyltransferase; Provisional.
Length = 500
Score = 31.6 bits (72), Expect = 1.7
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 10 DGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQR 69
+G + + K G VS + DE L+EL + + HTR++T G+ + N+ P
Sbjct: 71 EGDKVHLHKDMGLVSQVFDE--DILEEL------PGDLAVGHTRYSTTGSSRKANAQPAV 122
Query: 70 SDID-QTFCVVHNGIVTNYKELKAFLTNKDH 99
+ + HNG + N EL+ L +
Sbjct: 123 LETRLGPLALAHNGNLVNTVELREELLARGC 153
>gnl|CDD|239393 cd03119, alpha_CA_I_II_III_XIII, Carbonic anhydrase alpha, isozymes
I, II, and III and XIII. Carbonic anhydrases (CAs) are
zinc-containing enzymes that catalyze the reversible
hydration of carbon dioxide in a two-step mechanism: a
nucleophilic attack of a zinc-bound hydroxide ion on
carbon dioxide, followed by the regeneration of the
active site by ionization of the zinc-bound water
molecule and removal of a proton from the active site.
They are ubiquitous enzymes involved in fundamental
processes like photosynthesis, respiration, pH
homeostasis and ion transport. Most alpha CAs are
monomeric enzymes. The zinc ion is complexed by three
histidines. This vertebrate subgroup comprises isozymes
I, II, and III, which are cytoplasmic enzymes. CA I, for
example, is expressed in erythrocyes of many
vertebrates; CA II is the most active cytosolic isozyme;
while it is being expressed nearly ubiquitously, it
comprises 95% of the renal carbonic anhydrase and is
required for renal acidification; CA III has been
implicated in protection from the damaging effect of
oxidizing agents in hepatocytes. CAXIII may play
important physiological roles in several organs.
Length = 259
Score = 30.9 bits (70), Expect = 2.0
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Query: 381 HTNRVIFLEDDDVAAVKDGSLS-IHRLRR------SLDDPHGREITI 420
H+ V F + DD + ++ G L+ +RLR+ S DD HG E T+
Sbjct: 64 HSFNVEFDDTDDRSVLRGGPLTGSYRLRQFHFHWGSSDD-HGSEHTV 109
>gnl|CDD|235984 PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional.
Length = 484
Score = 31.2 bits (71), Expect = 2.2
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 45 THVGIAHTRWATHGAPSEVNSHPQRSDI-DQTFCVVHNGIVTNYKELKAFLTNKDHRPHG 103
I H R+AT G+ S N P D F + HNG +TN L+ L + H
Sbjct: 76 GQAAIGHVRYATAGSASIENIQPFLFHFHDMQFGLAHNGNLTNAVSLRKELEKQGAIFHS 135
Query: 104 RSET 107
S+T
Sbjct: 136 SSDT 139
>gnl|CDD|240143 cd05010, SIS_AgaS_like, AgaS-like protein. AgaS contains a SIS
(Sugar ISomerase) domain which is found in many
phosphosugar isomerases and phosphosugar binding
proteins. AgaS is a putative isomerase in Escherichia
coli. It is similar to the glucosamine-6-phosphate
synthases (GlmS) which catalyzes the first step in
hexosamine metabolism, converting fructose 6-phosphate
into glucosamine 6-phosphate using glutamine as nitrogen
source.
Length = 151
Score = 29.9 bits (68), Expect = 2.5
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 18/63 (28%)
Query: 658 GGYNYATCMEGALKIKELTYMHSEGIMAGEL----------KHGPLALIDNSMPVIMILT 707
G E ALK+ ELT AG++ +HGP +L+D+ V++ ++
Sbjct: 6 SGPLAGLAREAALKVLELT--------AGKVATVYDSPLGFRHGPKSLVDDDTLVVVFVS 57
Query: 708 RDP 710
DP
Sbjct: 58 NDP 60
>gnl|CDD|198435 cd10285, somatotropin_like, Somatotropin or growth hormone (GH),
placental lactogen, and related pituitary gland
hormones. Growth hormone (GH) or somatotropin is a
peptide hormone synthesized by the pituitary gland,
which mediates anabolic effects in development. GH is
known to activate, via binding to specific cellular
receptors, the MAPK/ERK and JAK-STAT signaling pathways.
Via the latter, it triggers the secretion of
insulin-like growth factor 1 (mostly in the liver).
Besides increasing body height, GH has been shown to
have a host of other effects.
Length = 180
Score = 30.1 bits (68), Expect = 3.0
Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 14/103 (13%)
Query: 148 FLERFDRGNCNCQSLTVPKSKKERRQDRNKSAVLRTNLWDILLGLSSSW-------AGIE 200
+ C +S+ P K E +Q KS + L I L L SW + +
Sbjct: 35 SNKNSPAAFCYSESIPAPTGKDETQQ---KSDL---ELLRISLLLIQSWLKPVQFLSSVF 88
Query: 201 PRGLIEGTDDDV-AAVKDGSLSIHRLRRSLDDPHGREITILKL 242
L G+ D + +KD I L R L+D R +LK
Sbjct: 89 TNQLHFGSSDRIYEKLKDLEEGIQTLIRELEDGSPRGGQLLKQ 131
>gnl|CDD|233454 TIGR01536, asn_synth_AEB, asparagine synthase
(glutamine-hydrolyzing). This model describes the
glutamine-hydrolysing asparagine synthase. A poorly
conserved C-terminal extension was removed from the
model. Bacterial members of the family tend to have a
long, poorly conserved insert lacking from archaeal and
eukaryotic sequences. Multiple isozymes have been
demonstrated, such as in Bacillus subtilis. Long-branch
members of the phylogenetic tree (which typically were
also second or third candidate members from their
genomes) were removed from the seed alignment and score
below trusted cutoff [Amino acid biosynthesis, Aspartate
family].
Length = 466
Score = 30.8 bits (70), Expect = 3.3
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 45 THVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHNGIVTNYKELKAFLTNKDHRPHGR 104
+ + H R A + P ++ T+ +V NG + N++EL+ L K +
Sbjct: 40 GNAILGHRRLAIID--LSGGAQPMSNEGK-TYVIVFNGEIYNHEELREELEAKGYTFQTD 96
Query: 105 SETMPMLP 112
S+T +L
Sbjct: 97 SDTEVILH 104
>gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein. This model describes a
number of closely related proteins with the
phosphosugar-binding domain SIS (Sugar ISomerase)
followed by two copies of the CBS (named after
Cystathionine Beta Synthase) domain. One is GutQ, a
protein of the glucitol operon. Another is KpsF, a
virulence factor involved in capsular polysialic acid
biosynthesis in some pathogenic strains of E. coli
[Energy metabolism, Sugars].
Length = 268
Score = 30.2 bits (68), Expect = 3.8
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 527 DVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE---IG 583
DV IS SGE+ + L + + K I+ T + SS++R + + I E I
Sbjct: 49 DVVLMISYSGESLELLNLIPHLKRLSHKIIAFTGSPNSSLARAADYVLDIKVEKEACPIN 108
Query: 584 VASTKAYTSQFISLVMF-ALVMC 605
+A T TS ++L + AL +
Sbjct: 109 LAPT---TSTTLTLALGDALAVA 128
>gnl|CDD|227158 COG4821, COG4821, Uncharacterized protein containing SIS (Sugar
ISomerase) phosphosugar binding domain [General function
prediction only].
Length = 243
Score = 29.8 bits (67), Expect = 4.7
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 27/108 (25%)
Query: 475 IRRCRRLMMIGCGTSYHSA----------VATRQLLEELTELPVMVE---LASDFLDRNT 521
I R+ + G G S+ A + +L E P+M+ +AS +L+R
Sbjct: 35 IMNDGRIYVFGSGHSHMLAEEVFYRAGGLAPIKPILME----PLMLHEGAVASSYLERIE 90
Query: 522 PVFR----------DDVCFFISQSGETADSLMALRYCKARGALIVGVT 559
+ +DV IS SG + Y + +GA ++ VT
Sbjct: 91 GYAKLFLHRLQIRPNDVLIVISNSGRNPVPIEVAEYAREKGAKVIAVT 138
>gnl|CDD|223152 COG0074, SucD, Succinyl-CoA synthetase, alpha subunit [Energy
production and conversion].
Length = 293
Score = 29.5 bits (67), Expect = 5.6
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 540 DSLMALRYCKARGALIVGVTNTVGSSISRESHCGI---HINAGPEIGVAS 586
D L RY + +G ++G N G E GI +I IG+ S
Sbjct: 104 DMLELKRYAREKGTRLIG-PNCPGIITPGECKIGIMPGNIYKPGNIGIVS 152
>gnl|CDD|234108 TIGR03104, trio_amidotrans, asparagine synthase family
amidotransferase. Members of this protein family are
closely related to several isoforms of asparagine
synthetase (glutamine amidotransferase) and typically
have been given this name in genome annotation to date.
Each is part of a conserved three-gene cassette sparsely
distributed across at least twenty different species
known so far, including alpha, beta, and gamma
Proteobacteria, Mycobacterium, and Prosthecochloris,
which is a member of the Chlorobi. The other two members
of the cassette are a probable protease and a member of
the GNAT family of acetyltransferases.
Length = 589
Score = 29.7 bits (67), Expect = 6.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 78 VVHNGIVTNYKELKAFLTNKDHRPHGRSET 107
+V NG + NY+EL+A L +R +T
Sbjct: 72 LVFNGCIYNYRELRAELEALGYRFFSDGDT 101
>gnl|CDD|129282 TIGR00178, monomer_idh, isocitrate dehydrogenase, NADP-dependent,
monomeric type. The monomeric type of isocitrate
dehydrogenase has been found so far in a small number of
species, including Azotobacter vinelandii,
Corynebacterium glutamicum, Rhodomicrobium vannielii,
and Neisseria meningitidis. It is NADP-specific [Energy
metabolism, TCA cycle].
Length = 741
Score = 29.8 bits (67), Expect = 7.0
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 2 KCIALDAADGVDIAIVKKSGKVSALEDEIQTRLKEL 37
K +DAA V I ++ K G + L+ ++ E+
Sbjct: 186 KSATIDAAGSVKIELIAKDGSSTVLKAKLPLLDGEI 221
>gnl|CDD|223444 COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino
acid transport and metabolism].
Length = 542
Score = 29.3 bits (66), Expect = 9.8
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 46 HVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHNGIVTNYKELKAFLTNKDHRPHGRS 105
+ + H R + + +V+NG + N +EL+ L + S
Sbjct: 42 NALLGHRRLSIVD---LSGGRQPMIKEGGKYAIVYNGEIYNVEELRKELREAGYEFRTYS 98
Query: 106 ETMPMLP 112
+T +L
Sbjct: 99 DTEVILT 105
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.392
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 37,267,059
Number of extensions: 3675845
Number of successful extensions: 3491
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3430
Number of HSP's successfully gapped: 101
Length of query: 737
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 633
Effective length of database: 6,324,786
Effective search space: 4003589538
Effective search space used: 4003589538
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.0 bits)