RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1919
(737 letters)
>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1;
glucosamine-6-phosphate synthase, aldose/ketose
isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo
sapiens} PDB: 2zj4_A* 2v4m_A*
Length = 375
Score = 522 bits (1346), Expect = 0.0
Identities = 231/302 (76%), Positives = 267/302 (88%), Gaps = 1/302 (0%)
Query: 421 LKLEIQEIMKGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRR 480
Q+IMKGN+S FMQKEIFEQPESVVNTMRGR+NF+ +V LGG+KD+I EI+RCRR
Sbjct: 3 HHHHHQQIMKGNFSSFMQKEIFEQPESVVNTMRGRVNFDDYTVNLGGLKDHIKEIQRCRR 62
Query: 481 LMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETAD 540
L++I CGTSYH+ VATRQ+LEELTELPVMVELASDFLDRNTPVFRDDVCFF+SQSGETAD
Sbjct: 63 LILIACGTSYHAGVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFFLSQSGETAD 122
Query: 541 SLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMF 600
+LM LRYCK RGAL VG+TNTVGSSISRE+ CG+HINAGPEIGVASTKAYTSQF+SLVMF
Sbjct: 123 TLMGLRYCKERGALTVGITNTVGSSISRETDCGVHINAGPEIGVASTKAYTSQFVSLVMF 182
Query: 601 ALVMCEDRISLQTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGGY 660
AL+MC+DRIS+Q RR EI+ GLK + + I+EVL MD E+Q+LA E+Y QKS+L+MGR GY
Sbjct: 183 ALMMCDDRISMQERRKEIMLGLKRLPDLIKEVLSMDDEIQKLATELYHQKSVLIMGR-GY 241
Query: 661 NYATCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALL 720
+YATC+EGALKIKE+TYMHSEGI+AGELKHGPLAL+D MPVIMI+ RD Y KC NAL
Sbjct: 242 HYATCLEGALKIKEITYMHSEGILAGELKHGPLALVDKLMPVIMIIMRDHTYAKCQNALQ 301
Query: 721 QV 722
QV
Sbjct: 302 QV 303
Score = 86.8 bits (216), Expect = 2e-18
Identities = 34/49 (69%), Positives = 40/49 (81%)
Query: 240 LKLEIQEIMKGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIK 288
Q+IMKGN+S FMQKEIFEQPESVVNTMRGR+NF+ +V LGG+K
Sbjct: 3 HHHHHQQIMKGNFSSFMQKEIFEQPESVVNTMRGRVNFDDYTVNLGGLK 51
>2poc_A D-fructose-6- PH, isomerase domain of glutamine-fructose-6-phosphat
transaminase (isomerizing); glucosamine-6-phosphate
synthase; HET: BG6 UD1; 1.80A {Candida albicans} PDB:
2put_A* 2puv_A* 2puw_A*
Length = 367
Score = 502 bits (1296), Expect = e-174
Identities = 190/296 (64%), Positives = 242/296 (81%), Gaps = 2/296 (0%)
Query: 429 MKGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGCGT 488
MKG Y +FMQKEIFEQP+S NTMRGRI+FE V LGG+K ++ IRRCRR++MI CGT
Sbjct: 1 MKGPYKHFMQKEIFEQPDSAFNTMRGRIDFENCVVTLGGLKSWLSTIRRCRRIIMIACGT 60
Query: 489 SYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYC 548
SYHS +ATR + EELTE+PV VELASDFLDR +PVFRDD C F+SQSGETADS++AL+YC
Sbjct: 61 SYHSCLATRSIFEELTEIPVSVELASDFLDRRSPVFRDDTCVFVSQSGETADSILALQYC 120
Query: 549 KARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDR 608
RGAL VG+ N+VGSS+SR++HCG+HINAGPEIGVASTKAYTSQ+I+LVMFAL + D
Sbjct: 121 LERGALTVGIVNSVGSSMSRQTHCGVHINAGPEIGVASTKAYTSQYIALVMFALSLSNDS 180
Query: 609 ISLQTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMY-EQKSMLLMGRGGYNYATCME 667
IS + R EIIKGL+ I EQI++VL+++++++ L +QKS+LL+GR GY +AT +E
Sbjct: 181 ISRKGRHEEIIKGLQKIPEQIKQVLKLENKIKDLCNSSLNDQKSLLLLGR-GYQFATALE 239
Query: 668 GALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVI 723
GALKIKE++YMHSEG++AGELKHG LAL+D +P+I TRD ++ K M+A+ QV
Sbjct: 240 GALKIKEISYMHSEGVLAGELKHGILALVDEDLPIIAFATRDSLFPKVMSAIEQVT 295
Score = 81.8 bits (203), Expect = 8e-17
Identities = 29/41 (70%), Positives = 33/41 (80%)
Query: 248 MKGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIK 288
MKG Y +FMQKEIFEQP+S NTMRGRI+FE V LGG+K
Sbjct: 1 MKGPYKHFMQKEIFEQPDSAFNTMRGRIDFENCVVTLGGLK 41
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing];
amidotransferase, ammonia channeling, glucosamine 6-
phosphate synthase; HET: F6R; 2.05A {Escherichia coli}
SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X
2vf5_X* 3ooj_A*
Length = 608
Score = 433 bits (1115), Expect = e-143
Identities = 133/349 (38%), Positives = 202/349 (57%), Gaps = 8/349 (2%)
Query: 368 EYFFASDASAVIEHTNRVIFLEDDDVAAVKDGSLSIHRLRRSLDDPHGREITILKLEIQE 427
E F ASD A++ T R IFLE+ D+A + S++I R+ L+
Sbjct: 186 ENFIASDQLALLPVTRRFIFLEEGDIAEITRRSVNIFDKT---GAEVKRQDIESNLQYDA 242
Query: 428 IMKGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEI-RRCRRLMMIGC 486
KG Y ++MQKEI+EQP ++ NT+ GRI+ V L + E+ + + ++ C
Sbjct: 243 GDKGIYRHYMQKEIYEQPNAIKNTLTGRIS--HGQVDLSELGPNADELLSKVEHIQILAC 300
Query: 487 GTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALR 546
GTSY+S + +R E L +P VE+AS+F R + V R+ + +SQSGETAD+L LR
Sbjct: 301 GTSYNSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGLR 360
Query: 547 YCKARGAL-IVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMC 605
K G L + + N GSS+ RES + NAG EIGVASTKA+T+Q L+M +
Sbjct: 361 LSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKLS 420
Query: 606 EDRISLQTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGGYNYATC 665
+ + + ++I+ GL+ + +I ++L D ++ LA++ ++ L +GR G Y
Sbjct: 421 KLKGLDASIEHDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGR-GDQYPIA 479
Query: 666 MEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVK 714
+EGALK+KE++Y+H+E AGELKHGPLALID MPVI++ + + K
Sbjct: 480 LEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEK 528
Score = 120 bits (304), Expect = 1e-28
Identities = 60/195 (30%), Positives = 80/195 (41%), Gaps = 68/195 (34%)
Query: 4 IALDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEV 63
+A+ A+G + +++ GKV L + E GIAHTRWATHG PSEV
Sbjct: 33 LAVVDAEG-HMTRLRRLGKVQMLAQAAE--------EHPLHGGTGIAHTRWATHGEPSEV 83
Query: 64 NSHPQRSDIDQTFCVVHNGIVTNY----KELKA----FLTNKD----------HRPHGRS 105
N+HP S+ VVHNGI+ N+ +ELKA F++ D G +
Sbjct: 84 NAHPHVSE---HIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGT 140
Query: 106 ------ETMPML-------------P------RNDSTSEFQPL-----EDKQVEYFFASD 135
+P L P R+ S PL E F ASD
Sbjct: 141 LREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGS-----PLVIGLGMG---ENFIASD 192
Query: 136 ASAVIEHTNRVIFLE 150
A++ T R IFLE
Sbjct: 193 QLALLPVTRRFIFLE 207
Score = 74.4 bits (184), Expect = 5e-14
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 209 DDDVAAVKDGSLSIHRLRRSLDDPHGREITILKLEIQEIMKGNYSYFMQKEIFEQPESVV 268
+ D+A + S++I R+ L+ KG Y ++MQKEI+EQP ++
Sbjct: 208 EGDIAEITRRSVNIFDKT---GAEVKRQDIESNLQYDAGDKGIYRHYMQKEIYEQPNAIK 264
Query: 269 NTMRGRINFETNSVILGGIK 288
NT+ GRI+ V L +
Sbjct: 265 NTLTGRIS--HGQVDLSELG 282
>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET:
GLP MES; 1.57A {Escherichia coli} SCOP: c.80.1.1 PDB:
1mor_A* 1mos_A*
Length = 368
Score = 378 bits (973), Expect = e-125
Identities = 115/287 (40%), Positives = 174/287 (60%), Gaps = 5/287 (1%)
Query: 430 KGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEI-RRCRRLMMIGCGT 488
KG Y ++MQKEI+EQP ++ NT+ GRI+ V L + E+ + + ++ CGT
Sbjct: 5 KGIYRHYMQKEIYEQPNAIKNTLTGRIS--HGQVDLSELGPNADELLSKVEHIQILACGT 62
Query: 489 SYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYC 548
SY+S + +R E L +P VE+AS+F R + V R+ + +SQSGETAD+L LR
Sbjct: 63 SYNSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGLRLS 122
Query: 549 KARGAL-IVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCED 607
K G L + + N GSS+ RES + NAG EIGVASTKA+T+Q L+M +
Sbjct: 123 KELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKLSRL 182
Query: 608 RISLQTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGGYNYATCME 667
+ + ++I+ GL+ + +I ++L D ++ LA++ ++ L +GR G Y +E
Sbjct: 183 KGLDASIEHDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGR-GDQYPIALE 241
Query: 668 GALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVK 714
GALK+KE++Y+H+E AGELKHGPLALID MPVI++ + + K
Sbjct: 242 GALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEK 288
Score = 62.1 bits (152), Expect = 2e-10
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 249 KGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIK 288
KG Y ++MQKEI+EQP ++ NT+ GRI+ V L +
Sbjct: 5 KGIYRHYMQKEIYEQPNAIKNTLTGRIS--HGQVDLSELG 42
>3tbf_A Glucosamine--fructose-6-phosphate aminotransferas [isomerizing];
structural genomics; 2.28A {Francisella tularensis
subsp}
Length = 372
Score = 376 bits (969), Expect = e-125
Identities = 102/288 (35%), Positives = 172/288 (59%), Gaps = 6/288 (2%)
Query: 430 KGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEI-RRCRRLMMIGCGT 488
K Y ++M KEI+EQPE+V NT+ + + L E+ + + + ++ CGT
Sbjct: 7 KDGYKHYMLKEIYEQPEAVSNTILASLA--DGEISLDSFDKRAKELFEKTKHICIVACGT 64
Query: 489 SYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYC 548
SY++ + + +E+ ++P VE+AS+ R+ V + ISQSGETAD+L +LR
Sbjct: 65 SYNAGMTAKYWIEKYAKVPCSVEIASEIRYRDNVVVDGSLFVSISQSGETADTLESLRKS 124
Query: 549 KARGAL-IVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCED 607
K + + + + N SS+ RES AG EIGVASTKA+T+Q ++L +F LV+ +
Sbjct: 125 KKQNYVGSMCICNVPNSSLVRESDIAFMTKAGVEIGVASTKAFTTQLVALAIFTLVIAKL 184
Query: 608 RISL-QTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGGYNYATCM 666
+ SL + + + LK I + L++D+E+ Q+++ +++ + +GR G Y +
Sbjct: 185 KNSLTDQQIAKYTEELKNIRALVMGALKLDTEIDQISEYFSDKEHTIFLGR-GLYYPIAI 243
Query: 667 EGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVK 714
EGALK+KE++Y+H+E +GELKHGPLAL+D +MP++ ++ D + K
Sbjct: 244 EGALKLKEISYIHAEAYPSGELKHGPLALVDKNMPIVAVVPNDELLDK 291
Score = 62.5 bits (153), Expect = 1e-10
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 249 KGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGI 287
K Y ++M KEI+EQPE+V NT+ + + L
Sbjct: 7 KDGYKHYMLKEIYEQPEAVSNTILASLA--DGEISLDSF 43
>3knz_A Putative sugar binding protein; structural genomics, joint C
structural genomics, JCSG, protein structure initiative;
2.50A {Salmonella enterica subsp}
Length = 366
Score = 365 bits (940), Expect = e-121
Identities = 55/287 (19%), Positives = 105/287 (36%), Gaps = 10/287 (3%)
Query: 430 KGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGCGTS 489
++ + + E P ++ + L + R R+++ G GTS
Sbjct: 9 HHHHENLYFQGMNETPLRLLEMLTQTRE------DLWRAAQAL-TERGVTRIILTGSGTS 61
Query: 490 YHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCK 549
YH A+ R ++ LPV V D + ISQ G + +L A+ +
Sbjct: 62 YHGALTARTFMQRWCALPVDVCWPFMLDDETLARSGKALVVGISQGGGSLSTLAAMERAR 121
Query: 550 ARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRI 609
G + + ++I R + + + G E A TK Y ++L++ AL + +
Sbjct: 122 NVGHITASMAGVAPATIDRAADYILTVPCGEETAGAKTKGYHCTVLNLMLLALAVAGQQQ 181
Query: 610 SL-QTRRNEIIKGLKVIHEQIREVL-QMDSEVQQLAKEMYEQKSMLLMGRGGYNYATCME 667
L +R ++ ++ + ++ + Q A + + + L G + T E
Sbjct: 182 RLDGEQRRSLLLRMEKTFNHLPALVTASQAWAQTNALALRDSADIRLTGP-ATLFGTVQE 240
Query: 668 GALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVK 714
GALK+ E G E HG + +IM+ +
Sbjct: 241 GALKMLETLRCPVSGYEFEEFIHGIYNAFNAQSALIMLDPQPDARQD 287
Score = 55.2 bits (134), Expect = 4e-08
Identities = 3/49 (6%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 249 KGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKRKIRPKCIV 297
++ + + E P ++ + + +R + +
Sbjct: 9 HHHHENLYFQGMNETPLRLLEMLTQTRE-DLWRAAQALTERGVTRIILT 56
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative; HET: MSE; 1.75A {Silicibacter pomeroyi
dss-3}
Length = 344
Score = 356 bits (915), Expect = e-117
Identities = 68/286 (23%), Positives = 117/286 (40%), Gaps = 19/286 (6%)
Query: 430 KGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGCGTS 489
+ M++EI E PE+V + + ++D + + G+S
Sbjct: 2 MTQHITRMRREIDEIPEAVQRLLDHGAQDVARVAAVLRLRDP-------SFVATVARGSS 54
Query: 490 YHSAVATRQLLEELTELPVMVELASDFLD-RNTPVFRDDVCFFISQSGETADSLMALRYC 548
H E L LPV S +C +SQSG++ D + R
Sbjct: 55 DHVCTYLSYAAELLLGLPVASLGPSVASVYDARLRLDRALCLAVSQSGKSPDIVAMTRNA 114
Query: 549 KARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDR 608
GAL V +TN S ++ S I I+AGPE+ VA+TK + + ++ +M ED
Sbjct: 115 GRDGALCVALTNDAASPLAGVSAHTIDIHAGPELSVAATKTFVTSAVAGLMLLADWAEDD 174
Query: 609 ISLQTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGGYNYATCMEG 668
+ L + E + ++D ++ + + S+ +GR G + A E
Sbjct: 175 --------GLRAALGNLPETLAAASRID--WPEMRVAIGARPSLFTLGR-GTSLAVSNEA 223
Query: 669 ALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVK 714
ALK KE +H+E + E+ HGP+++++ PV+ D
Sbjct: 224 ALKFKETCQLHAESYSSAEVLHGPVSIVEEGFPVLGFAAGDAAEAP 269
Score = 59.8 bits (146), Expect = 1e-09
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 249 KGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKR 289
+ M++EI E PE+V + + ++
Sbjct: 2 MTQHITRMRREIDEIPEAVQRLLDHGAQDVARVAAVLRLRD 42
>3hba_A Putative phosphosugar isomerase; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE CIT; 2.00A {Shewanella denitrificans
OS217}
Length = 334
Score = 344 bits (885), Expect = e-113
Identities = 64/283 (22%), Positives = 126/283 (44%), Gaps = 19/283 (6%)
Query: 433 YSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGCGTSYHS 492
+ M++E P+ + + I + + E + + +M++G G+S H+
Sbjct: 4 TNTIMEQEARTAPQKIAEQLLAND------AITESLGSVLREFK-PKFVMIVGRGSSDHA 56
Query: 493 AVATRQLLEELTELPVMVELASDFLD-RNTPVFRDDVCFFISQSGETADSLMALRYCKAR 551
V + L E +P S T + ISQSG + D L R K
Sbjct: 57 GVFAKYLFEIEASIPTFAAAPSVASVYGKTLKLAGGLVIVISQSGRSPDILAQARMAKNA 116
Query: 552 GALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISL 611
GA V + N + I I + AG E VA+TK+Y + +L+ A ++
Sbjct: 117 GAFCVALVNDETAPIKDIVDVVIPLRAGEEKAVAATKSYLATLSALLQVAAKWTQNE--- 173
Query: 612 QTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALK 671
+++ + + + ++ + + +++ A + + K+++++GR G+ YA E ALK
Sbjct: 174 -----SLVEAVNSLPQALQAAVDAEPQLR--AGSLTDVKNLVVLGR-GFGYAVSKEIALK 225
Query: 672 IKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVK 714
+KE+ +H+E + E HGP+ L++ + ++ + RD Y
Sbjct: 226 LKEVCAIHAEAFSSAEFLHGPVTLVEKKLSILDVCIRDESYGS 268
Score = 51.8 bits (125), Expect = 4e-07
Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 252 YSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKRKIRPKCIVVKLC 301
+ M++E P+ + + + LG + R+ +PK +++
Sbjct: 4 TNTIMEQEARTAPQKIAEQLLANDAITES---LGSVLREFKPKFVMIVGR 50
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA
protein, structural genomics, joint center for
structural G JCSG; HET: MSE CIT; 1.80A {Clostridium
difficile}
Length = 352
Score = 341 bits (876), Expect = e-111
Identities = 50/276 (18%), Positives = 112/276 (40%), Gaps = 15/276 (5%)
Query: 437 MQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGCGTSYHSAVAT 496
+Q + E P + + + + +K +++++ G GTSYHS V
Sbjct: 4 IQDYMLETPVRMREIISNADS------LFNEVK-----RTNLKKIIITGSGTSYHSGVQV 52
Query: 497 RQLLEELTELPVMVELASDFLDRNTPVF-RDDVCFFISQSGETADSLMALRYCKARGALI 555
+ L+ L ++ V+ + + + +SQ G + + A++ + +G I
Sbjct: 53 QPYLQNLLDIDVVKMYPFMITEDTFKFDNENTLVVGVSQGGSSYSTYNAMKLAEDKGCKI 112
Query: 556 VGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISL-QTR 614
+ + I S + +N G E A TK Y ++L++ L + ++ + +
Sbjct: 113 ASMAGCKNALIDEISDYILTVNCGEEKSGAKTKGYYCTKLNLMLLGLQIAREKGIISSEK 172
Query: 615 RNEIIKGLKVIHEQIREVLQMDSE-VQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIK 673
NE I + + V ++ + +++ +++ K + ++G Y +E ALK+
Sbjct: 173 YNEEINKILDAINRFEAVYKLSKQWIERNKEKLVNSKEIRIIGH-SDIYGDTLEAALKLL 231
Query: 674 ELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRD 709
E + G E HG I++ + ++ T
Sbjct: 232 ETMRIPVTGYEFEEFIHGIYNAINSDSTIFILDTGK 267
Score = 44.8 bits (107), Expect = 6e-05
Identities = 6/34 (17%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 256 MQKEIFEQPESVVNTMRGRINFETNSVILGGIKR 289
+Q + E P + + + N V +K+
Sbjct: 4 IQDYMLETPVRMREIISNADSL-FNEVKRTNLKK 36
>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics,
joint center structural genomics, JCSG, protein
structure initiative; HET: MSE; 1.50A {Listeria
monocytogenes}
Length = 373
Score = 341 bits (876), Expect = e-111
Identities = 58/286 (20%), Positives = 118/286 (41%), Gaps = 11/286 (3%)
Query: 439 KEIFEQPESVVNTMRGRINF--ETNSVILGGIKDYIPEI-----RRCRRLMMIGCGTSYH 491
+I + TM IN E VIL + ++ + +++ G+S +
Sbjct: 4 DKIHHHHHHMKPTMMTYINEEEEMCRVILADFQTNAEKLESLVKNGAKEWLILATGSSLN 63
Query: 492 SAVATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKAR 551
+A + + +E L ++ + +E + L D+ ISQSG++ ++ AL K
Sbjct: 64 AAQSAKYYIENLADVRITIEEPFNHLYYEKLSSHLDLVIGISQSGQSTSTISALERVKKE 123
Query: 552 GAL-IVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRIS 610
++ +V +T+ V S I+ + + I +G E TK +T+ ++L++ L +
Sbjct: 124 ASVPVVALTSDVTSEIAEFADITLDIGSGKERVGYVTKGFTATVLTLMLTGLHFAYKTVQ 183
Query: 611 L-QTRRNEIIKGLKVIHEQIREVL-QMDSEVQQLAKEMYEQKSMLLMGRGGYNYATCMEG 668
+ +TR N I + I + + ++ ++ +E +G G TC E
Sbjct: 184 IDETRFNNEISAFSRAIDAIPATIAETEAFYERWQEEFATAPKFTAIGY-GPTVGTCKEF 242
Query: 669 ALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVK 714
K E + S+G+ HGP ++ + + T V +
Sbjct: 243 ETKFSETVRVPSQGLDLEAFMHGPYLEVNPQHRIFFLETASAVTER 288
Score = 38.7 bits (91), Expect = 0.006
Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 255 FMQKEIFEQPESVVNTMRGRINFETN--SVILGGIKR 289
M I E+ E + S++ G K
Sbjct: 16 TMMTYINEEEEMCRVILADFQTNAEKLESLVKNGAKE 52
Score = 35.3 bits (82), Expect = 0.068
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 258 KEIFEQPESVVNTMRGRINF--ETNSVILGGIK 288
+I + TM IN E VIL +
Sbjct: 4 DKIHHHHHHMKPTMMTYINEEEEMCRVILADFQ 36
>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813,
glucosamine-6-phosphate deamina PSI, protein structure
initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1
Length = 342
Score = 337 bits (866), Expect = e-110
Identities = 53/289 (18%), Positives = 108/289 (37%), Gaps = 23/289 (7%)
Query: 430 KGNYSYFMQ---KEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGC 486
++ + M KEI +Q + + + I I + ++ +GC
Sbjct: 6 IHHHHHHMSKTLKEITDQKNELKKFFENFVLNLEKTEIFSEI-----QKNLTDEVLFVGC 60
Query: 487 GTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFR-DDVCFFISQSGETADSLMAL 545
G+SY+ A+ E + ++ A + + P + F S++G T + L+A
Sbjct: 61 GSSYNLALTISYYFERVLKIRTKAIPAGEVAFQKIPDLEERGLAFLFSRTGNTTEVLLAN 120
Query: 546 RYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMC 605
K R +G+T S +++ES + E + TK+++ +SL+ A +
Sbjct: 121 DVLKKRNHRTIGITIEEESRLAKESDLPLVF-PVREEAIVMTKSFSMILLSLMFLADKIA 179
Query: 606 EDRISLQTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGGYNYATC 665
+ + E ++ ++ ++ E + +G +
Sbjct: 180 ------GNSTERFSELVGYSPEFFDISWKVIEKI-----DLKEHDHFVFLGMS-EFFGVS 227
Query: 666 MEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVK 714
+E ALK E++ SE E +HGP AL+ V M + +
Sbjct: 228 LESALKCIEMSLTFSEAYSTLEYRHGPKALVKKGTLVFMQ-KVSGMDEQ 275
Score = 60.2 bits (147), Expect = 6e-10
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 249 KGNYSYFMQ---KEIFEQPESVVNTMRGRINFETNSVILGGIKRKIRPKCIVV 298
++ + M KEI +Q + + + I I++ + + + V
Sbjct: 6 IHHHHHHMSKTLKEITDQKNELKKFFENFVLNLEKTEIFSEIQKNLTDEVLFV 58
>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Length = 347
Score = 333 bits (857), Expect = e-109
Identities = 55/292 (18%), Positives = 116/292 (39%), Gaps = 26/292 (8%)
Query: 430 KGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGCGTS 489
+ + + ++ Q SV + RI + I + R+ +GCG S
Sbjct: 4 DKIHHHHHHENLYFQGMSVAHENARRIISD------------ILGKQNIERVWFVGCGGS 51
Query: 490 YHSAVATRQLLE-ELTELPVMVELASDFLDRN-TPVFRDDVCFFISQSGETADSLMALRY 547
+ L+ E ++L V +++F+ + ++ V SQ G TA+++ A R
Sbjct: 52 LTGFWPGKYFLDCEASKLAVGYITSNEFVHATPKALGKNSVVILASQQGNTAETVAAARV 111
Query: 548 CKARGALIVGVTNTVGSSISRESHCGIHINAGP---EIGVASTKAYTSQFISLVMFALVM 604
+ +GA +G+ + + S I + A KA S +++L + A
Sbjct: 112 AREKGAATIGLVYQPDTPLCEYSDYIIEYQWARYPETVDPAQQKAAYSLWLALEILAQTE 171
Query: 605 CEDRISLQTRRNEIIKGLKVIHEQIREVL-QMDSEVQQLAKEMYEQKSMLLMGRGGYNYA 663
+ +E++ + + Q+ + Q+ A E ++K + +MG G ++
Sbjct: 172 GYAQY------DELVSAFGRFSDVVHGAQRQVQEDAQRFAAEWKDEKVVYMMGS-GPSFG 224
Query: 664 T-CMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVK 714
E + E+ +++S I +GE HGP + + P I++ +
Sbjct: 225 AAHQESICILLEMQWINSASIHSGEYFHGPFEITEPGTPFILLQSSGRTRPL 276
Score = 58.4 bits (142), Expect = 3e-09
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 249 KGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKR 289
+ + + ++ Q SV + RI + + I+R
Sbjct: 4 DKIHHHHHHENLYFQGMSVAHENARRIISD--ILGKQNIER 42
>2e5f_A Hypothetical protein PH0510; structural genomics, sugar binding
protein, NPPSFA, national on protein structural and
functional analyses; 1.35A {Pyrococcus horikoshii} PDB:
2dec_A* 2df8_A 2cb0_A*
Length = 325
Score = 299 bits (769), Expect = 4e-96
Identities = 54/278 (19%), Positives = 117/278 (42%), Gaps = 33/278 (11%)
Query: 439 KEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGCGTSYHSAVATRQ 498
EI + P+ ++ + + +KD I R ++ +GCG+S+ +
Sbjct: 5 IEIKQTPDGIIKADK----------VFNKVKDKISLPNR---ILYLGCGSSHFLSKLLAM 51
Query: 499 LLEELTELPVMVELASDFLDRN--TPVFRDDVCFFISQSGETADSLMALRYCKARGALIV 556
+ L + + S+FL P+ ++ IS+SGET + L+AL + I
Sbjct: 52 VTNMHGGLGIALP-CSEFLYSKETYPIGEVELAVGISRSGETTEILLALEKINVKKLGI- 109
Query: 557 GVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTRRN 616
T SS++R + + A E V T ++TS + + +
Sbjct: 110 ---TTRESSLTRMCDYSLVVPAIEE-SVVMTHSFTSFYFAYLQLLRYSYGLPPLNAGE-- 163
Query: 617 EIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIKELT 676
I + + L+ + ++++ + ++ ++++ +G G Y +E +LK+KE++
Sbjct: 164 --------ISKATEKSLEYERYIREIVES-FDFQNIIFLGSG-LLYPVALEASLKMKEMS 213
Query: 677 YMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVK 714
SE E++HG A+ D V++++ + +
Sbjct: 214 IFWSEAYPTFEVRHGFKAIADEKTLVVLMVEEPFEWHE 251
Score = 33.6 bits (78), Expect = 0.22
Identities = 5/32 (15%), Positives = 11/32 (34%), Gaps = 3/32 (9%)
Query: 258 KEIFEQPESVVNTMRGRINFETNSVILGGIKR 289
EI + P+ ++ + F + R
Sbjct: 5 IEIKQTPDGIIKADKV---FNKVKDKISLPNR 33
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural
genomics, joint center for structural genomics; HET:
MSE; 1.23A {Salmonella typhimurium}
Length = 355
Score = 295 bits (757), Expect = 7e-94
Identities = 48/289 (16%), Positives = 108/289 (37%), Gaps = 23/289 (7%)
Query: 430 KGNYSYFMQKEI-----FEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMI 484
++ + M + F Q E + + + + I L
Sbjct: 6 IHHHHHHMNNQEKNMLGFNQDEYLTSAREIIAARQKAEQVADEIYQ-----AGFSSLFFA 60
Query: 485 GCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVF-RDDVCFFISQSGETADSLM 543
G S +A + +ELT LPV VE A++ + + +D V +S+SG+T +S+
Sbjct: 61 SVGGSLAPMMAINEFAKELTTLPVYVEQAAELIHKGNKRLNKDSVVITLSKSGDTKESVA 120
Query: 544 ALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALV 603
+CKA+G +V +T S +++ A I + +++ L
Sbjct: 121 IAEWCKAQGIRVVAITKNADSPLAQA--------ATWHIPMRHKNGVEYEYMLLYWLFFR 172
Query: 604 MCEDRISLQTRRNEIIKGLKVIHEQIREV-LQMDSEVQQLAKEMYEQKSMLLMGRGGYNY 662
+ + L+++ + + + D + +A + M+ +G +
Sbjct: 173 VLSRNNEF-ASYDRFASQLEILPANLLKAKQKFDPQADAIASRYHNSDYMMWVGGA-EMW 230
Query: 663 A-TCMEGALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDP 710
+ ++E+ + + + + E HG L L++ +P+I++
Sbjct: 231 GEVYLFSMCILEEMQWKRTRPVSSAEFFHGALELLEKDVPLILVKGEGK 279
Score = 31.1 bits (71), Expect = 1.3
Identities = 6/51 (11%), Positives = 15/51 (29%), Gaps = 10/51 (19%)
Query: 249 KGNYSYFMQKEI-----FEQPESVVNT-----MRGRINFETNSVILGGIKR 289
++ + M + F Q E + + R + + + G
Sbjct: 6 IHHHHHHMNNQEKNMLGFNQDEYLTSAREIIAARQKAEQVADEIYQAGFSS 56
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative
phosphosugar isomerase, structural genomics, joint for
structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus
subtilis}
Length = 329
Score = 291 bits (747), Expect = 9e-93
Identities = 53/268 (19%), Positives = 117/268 (43%), Gaps = 15/268 (5%)
Query: 459 ETNSVILGGIKDYIPEI--RRCRRLMMIGCGTSYHSAVATRQLLEEL-TELPVMVELASD 515
+ + + ++ ++ ++ + + + CG S ++ + + + + A++
Sbjct: 4 QATAKVNREVQAFLQDLKGKTIDHVFFVACGGSSAIMYPSKYVFDRESKSINSDLYSANE 63
Query: 516 FLDRN-TPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGI 574
F+ RN + + S SG T +++ A + + +GAL + +T S +++E+
Sbjct: 64 FIQRNPVQLGEKSLVILCSHSGNTPETVKAAAFARGKGALTIAMTFKPESPLAQEAQYVA 123
Query: 575 HINAGPE-IGVASTKAYTSQFISLVMFALVMCEDRISLQTRRNEIIKGLKVIHEQIREVL 633
+ G E + + + Q + + L T+ + I+GL + + L
Sbjct: 124 QYDWGDEALAINTNYGVLYQIVFGTLQVLEN-------NTKFEQAIEGLDQLQAVYEKAL 176
Query: 634 QMDSE-VQQLAKEMYEQKSMLLMGRGGYNYATCMEGAL-KIKELTYMHSEGIMAGELKHG 691
+ +++ +Q AK ++ + M G NY ++ + E+ ++HS I AGE HG
Sbjct: 177 KQEADNAKQFAKAHEKESIIYTMAS-GANYGVAYSYSICILMEMQWIHSHAIHAGEYFHG 235
Query: 692 PLALIDNSMPVIMILTRDPVYVKCMNAL 719
P +ID S+P I++L D AL
Sbjct: 236 PFEIIDESVPFIILLGLDETRPLEERAL 263
>3i0z_A Putative tagatose-6-phosphate ketose/aldose isome; NP_344614.1,
putative putative tagatose-6-phosphate ketose/A
isomerase; HET: MSE; 1.70A {Streptococcus pneumoniae
TIGR4}
Length = 389
Score = 279 bits (717), Expect = 1e-87
Identities = 52/322 (16%), Positives = 118/322 (36%), Gaps = 36/322 (11%)
Query: 420 ILKLEIQEIMKGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCR 479
+L +++++ + +EI++QP+ + I +
Sbjct: 2 MLHYTKEDLLELG-AEITTREIYQQPDVWREAFEFYQAKREE---IAAFLQEIADKHDYI 57
Query: 480 RLMMIGCGTSYHSAVATRQLLEELTE--------LPVMVELASDFLDRNTPVFRDDVCFF 531
++++ G GTS + +E+ + + +A+ V V
Sbjct: 58 KVILTGAGTSAYVGDTLLPYFKEVYDERKWNFNAIATTDIVANPATYLKKDV--ATVLVS 115
Query: 532 ISQSGETADSLMALRYCKARGALI--VGVTNTVGSSISRESHCGIH------INAGPEIG 583
++SG + +SL + K+ + V +T ++ ++H + G
Sbjct: 116 FARSGNSPESLATVDLAKSLVDELYQVTITCAADGKLALQAHGDDRNLLLLQPAVSNDAG 175
Query: 584 VASTKAYTSQFISLVMFALVMCEDRISLQTRRNEIIKGLKVIHEQIREVLQMDSEVQQLA 643
A T ++TS ++ ++ T + +V+ R+VL +V++L
Sbjct: 176 FAMTSSFTSMMLTTLLVFD---------PTEFAVKSERFEVVSSLARKVLDKAEDVKELV 226
Query: 644 KEMYEQKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIM--AGELKHGPLALIDNSMP 701
+ ++ +G G + E LKI ELT + +HGP +LI+++
Sbjct: 227 DLDF--NRVIYLGAG-PFFGLAHEAQLKILELTAGQVATMYESPVGFRHGPKSLINDNTV 283
Query: 702 VIMILTRDPVYVKCMNALLQVI 723
V++ T K L++ +
Sbjct: 284 VLVFGTTTDYTRKYDLDLVREV 305
Score = 51.5 bits (124), Expect = 6e-07
Identities = 8/60 (13%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 239 ILKLEIQEIMKGNYSYFMQKEIFEQPESVVNTMRGRINFETN-SVILGGIKRKIRPKCIV 297
+L +++++ + +EI++QP+ + L I K ++
Sbjct: 2 MLHYTKEDLLELG-AEITTREIYQQPDVWREAFEFYQAKREEIAAFLQEIADKHDYIKVI 60
>3odp_A Putative tagatose-6-phosphate ketose/aldose isome; structural
genomics, joint center for structural genomics, J
protein structure initiative; HET: MSE PG4; 2.35A
{Clostridium novyi}
Length = 393
Score = 280 bits (718), Expect = 1e-87
Identities = 52/318 (16%), Positives = 117/318 (36%), Gaps = 33/318 (10%)
Query: 419 TILKLEIQEIMKGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRC 478
+L ++ +K Y KEI QP+ T ++ L D +
Sbjct: 4 NLLGYS-EDYLKERKGYITAKEICNQPKLWRETYEIILSQRE---KLKSFLDNF-AKKPN 58
Query: 479 RRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRD----DVCFFISQ 534
++++ G G+S + L + + +D + + + ++
Sbjct: 59 AKIVITGAGSSAFVGNSVVSYLNAKENIKIEAIATTDIVSHP-FYYLKKDEPTLLISCAR 117
Query: 535 SGETADSLMALRYCKARGALI--VGVTNTVGSSISRESHCGIHI------NAGPEIGVAS 586
SG + +S A+ + I + +T ++ + + + G A
Sbjct: 118 SGNSPESTAAVTLAEKIVDDISHLIITCNSEGKLALHAKRNYNSFLLLMPEESNDKGFAM 177
Query: 587 TKAYTSQFISLVMFALVMCEDRISLQTRRNEIIKGLKVIHEQIREVLQMDSE-VQQLAKE 645
T ++++ +S ++ + I K ++ I Q +VL + E ++++ E
Sbjct: 178 TGSFSTMLLSCLLIF---------NLDKLESIGKQIESISMQGEKVLVNNVELMKKIVGE 228
Query: 646 MYEQKSMLLMGRGGYNYATCMEGALKIKELTYMHSEGIMAGEL--KHGPLALIDNSMPVI 703
+ K + +G + E ALK+ ELT + L +HGP ++ID+ ++
Sbjct: 229 KF--KRTVYLGA-ANAFGLAKESALKVLELTAGKIATLYDTPLGFRHGPKSIIDDETLIV 285
Query: 704 MILTRDPVYVKCMNALLQ 721
+ + D + LL+
Sbjct: 286 IFFSNDTYAREYEYDLLK 303
Score = 59.6 bits (145), Expect = 2e-09
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 238 TILKLEIQEIMKGNYSYFMQKEIFEQPESVVNTMRGRINFETN-SVILGGIKRKIRPKCI 296
+L ++ +K Y KEI QP+ T ++ L +K K +
Sbjct: 4 NLLGYS-EDYLKERKGYITAKEICNQPKLWRETYEIILSQREKLKSFLDNFAKKPNAKIV 62
Query: 297 VV 298
+
Sbjct: 63 IT 64
>3c3j_A Putative tagatose-6-phosphate ketose/aldose isome;
tagatose-6-phosphate ketose/aldose isomerase, structural
GEN PSI, MCSG; 1.80A {Escherichia coli}
Length = 384
Score = 259 bits (664), Expect = 8e-80
Identities = 41/293 (13%), Positives = 97/293 (33%), Gaps = 37/293 (12%)
Query: 435 YFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEI--RRCRRLMMIGCGTSYHS 492
+ ++EI QP + + ++ + +++ + + R+++ G GTS
Sbjct: 14 TWTEEEIRHQPRAWIRSLTNIDALR------SALNNFLEPLLRKENLRIILTGAGTSAFI 67
Query: 493 AVATRQLL-----EELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRY 547
L + + +P + + N + +SG + +S+ A+
Sbjct: 68 GDIIAPWLASHTGKNFSAVPTTDLVTNPMDYLNPA--HPLLLISFGRSGNSPESVAAVEL 125
Query: 548 CKARGALIVGVT---NTVGSSISRESHCG---IHI--NAGPEIGVASTKAYTSQFISLVM 599
+ N G+ + + + G A T + T+ S +
Sbjct: 126 ANQFVPECYHLPITCNEAGALYQNAINSDNAFALLMPAETHDRGFAMTSSITTMMASCLA 185
Query: 600 FALVMCEDRISLQTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGG 659
+ + + ++ + +L + + K ++ +G G
Sbjct: 186 VFA-----------PETINSQTFRDVADRCQAILTSLGDFSEGVFGYAPWKRIVYLGSG- 233
Query: 660 YNYATCMEGALKIKELTYMHSEGIM--AGELKHGPLALIDNSMPVIMILTRDP 710
E ALK+ ELT +HGP +L+D+ V++ ++ P
Sbjct: 234 GLQGAARESALKVLELTAGKLAAFYDSPTGFRHGPKSLVDDETLVVVFVSSHP 286
Score = 45.0 bits (107), Expect = 6e-05
Identities = 4/25 (16%), Positives = 11/25 (44%)
Query: 254 YFMQKEIFEQPESVVNTMRGRINFE 278
+ ++EI QP + + ++
Sbjct: 14 TWTEEEIRHQPRAWIRSLTNIDALR 38
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase
[isomerizing]; complex (transferase/inhibitor),
glutamine amidotransferase; HET: GLU; 1.80A {Escherichia
coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Length = 240
Score = 116 bits (294), Expect = 1e-29
Identities = 60/195 (30%), Positives = 80/195 (41%), Gaps = 68/195 (34%)
Query: 4 IALDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEV 63
+A+ A+G + +++ GKV L + E GIAHTRWATHG PSEV
Sbjct: 33 LAVVDAEG-HMTRLRRLGKVQMLAQAAE--------EHPLHGGTGIAHTRWATHGEPSEV 83
Query: 64 NSHPQRSDIDQTFCVVHNGIVTNY----KELKA----FLTNKD----------HRPHGRS 105
N+HP S+ VVHNGI+ N+ +ELKA F++ D G +
Sbjct: 84 NAHPHVSE---HIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGT 140
Query: 106 ------ETMPML-------------P------RNDSTSEFQPL-----EDKQVEYFFASD 135
+P L P R+ S PL E F ASD
Sbjct: 141 LREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGS-----PLVIGLGMG---ENFIASD 192
Query: 136 ASAVIEHTNRVIFLE 150
A++ T R IFLE
Sbjct: 193 QLALLPVTRRFIFLE 207
Score = 59.0 bits (144), Expect = 8e-10
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 368 EYFFASDASAVIEHTNRVIFLEDDDVAAVKDGSLSIHRLRRSLDDPHGREITILKLE 424
E F ASD A++ T R IFLE+ D+A + S++I R+ L+
Sbjct: 186 ENFIASDQLALLPVTRRFIFLEEGDIAEITRRSVNIFDKT---GAEVKRQDIESNLQ 239
>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon,
hyperthermophIle, PGI family; 1.16A {Pyrobaculum
aerophilum} SCOP: c.80.1.1 PDB: 1tzc_A* 1x9h_A* 1x9i_A*
Length = 302
Score = 85.4 bits (210), Expect = 3e-18
Identities = 32/288 (11%), Positives = 89/288 (30%), Gaps = 40/288 (13%)
Query: 437 MQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGCGTSYHSA-VA 495
+ ++ ++ + ++ ++ I RL + G G S A +
Sbjct: 4 LLQDYLNWENYILRRVDFPTSYVVEGEVV--------RIEAMPRLYISGMGGSGVVADLI 55
Query: 496 TRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALI 555
L E+ V+ R+ + +S SG T ++L + Y K R
Sbjct: 56 RDFSLTWNWEVEVIAVKDYFLKARDG------LLIAVSYSGNTIETLYTVEYAKRRRIPA 109
Query: 556 VGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTRR 615
V +T G +++ + + A + T+ + + + L+
Sbjct: 110 VAITT--GGRLAQMGVPTVIVPKASAPRAALPQLLTAALHVVAKVYGIDVKIPEGLEPPN 167
Query: 616 NEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIKEL 675
+I L ++ ++ + ++ +A + + E
Sbjct: 168 EALIHKLVEEFQKRPTIIAAE-SMRGVAYRVKNE----------------------FNEN 204
Query: 676 TYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVI 723
+ + E H + + ++ + + + + A ++++
Sbjct: 205 AKIEPSVEILPEAHHNWIEGSERAVVALTSPHIPKEHQERVKATVEIV 252
>1te5_A Conserved hypothetical protein; glutamine amidotransferase,
amidotransferase, structural genomics, PSI, protein
structure initiative; 2.00A {Pseudomonas aeruginosa
PAO1} SCOP: d.153.1.1
Length = 257
Score = 64.0 bits (155), Expect = 2e-11
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 45 THVGIAHTRWATHGAPSEVNSHP-QRSDIDQTFCVVHNGIVTNYKELKAFL 94
+ I H R A G N+HP R + + HNG + +++ F
Sbjct: 71 SETVIGHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQPKPGFY 121
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 66.6 bits (162), Expect = 3e-11
Identities = 75/468 (16%), Positives = 143/468 (30%), Gaps = 165/468 (35%)
Query: 339 RP----HGRSETMPMLPRND------STSEFQPLEDKQVEYFFASDA-SAVIE------- 380
RP HG E + ++P +F + + E F A D + E
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 381 HTNRVI----------------------FLEDDDVAAVKDGSLSIHRLRRSLDDPHGREI 418
+ + ++ +LE +D IH L L + +
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND----------IHALAAKLLQEN--DT 114
Query: 419 TILKLEIQEIMKGNYSYF-----MQKEIFEQPES----VVNTMRGRINFETNSVILGG-- 467
T++K +E++K +Y ++ ++ S V ++ I GG
Sbjct: 115 TLVK--TKELIK---NYITARIMAKRPFDKKSNSALFRAVGEGNAQL-V----AIFGGQG 164
Query: 468 -IKDYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRD 526
DY E+ R L +YH V L++ E + EL LD VF
Sbjct: 165 NTDDYFEEL---RDL-----YQTYHVLV--GDLIKFSAET--LSELIRTTLDAE-KVFTQ 211
Query: 527 --DVCFFISQSGETADS--------------LMAL-RY---CKARG-------ALIVGVT 559
++ ++ T D ++ L Y K G + + G T
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 560 NTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTRRNEII 619
+ + A + +A T ++ S F V A+ +
Sbjct: 272 -GHSQGL---------VTA---VAIAETDSWES-FFVSVRKAI-----TVLFFI------ 306
Query: 620 KGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIKELTYMH 679
G++ +E + + + + E + M L I LT
Sbjct: 307 -GVRC-YEAYP-NTSLPPSILEDSLE------------NNEGVPSPM---LSISNLTQEQ 348
Query: 680 SEGIMAGELKHGP------LALIDNSMPVIMILTRDPVYVKCMNALLQ 721
+ + H P ++L+ N ++++ P + +N L+
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLV-NG-AKNLVVSGPPQSLYGLNLTLR 394
Score = 50.0 bits (119), Expect = 3e-06
Identities = 103/696 (14%), Positives = 201/696 (28%), Gaps = 268/696 (38%)
Query: 100 RP----HGRSETMPMLPRND------STSEFQPLEDKQVEYFFASDA-SAVIEHTNRVIF 148
RP HG E + ++P +F + + E F A D + E + F
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK--F 64
Query: 149 LERFDRGNCNCQSLTVPKSKKERRQDRNKSAVLRTNLWDILLGLSSSWAGIEPRGLIEGT 208
L + SL P + Q VL L + E +EG
Sbjct: 65 LG-Y------VSSLVEPSKVGQFDQ------VLNLCLTEF-----------E-NCYLEGN 99
Query: 209 DDDVAAVKDGSLSIHRLRRSLDDPHGREITILKLEIQEIMKGNYSYFMQKEIFEQPESVV 268
D IH L L + + T++K +E++K +Y + + ++P
Sbjct: 100 D------------IHALAAKLLQEN--DTTLVK--TKELIK---NYITARIMAKRP---- 136
Query: 269 NTMRGRINFETNSVILGGIKRKIRPKCIVVKLCPNMVDRRGEEVNLLCRGSVRF--QSTS 326
+ ++NS + + + + + F Q +
Sbjct: 137 ------FDKKSNSALFRAVGEG-NAQLVAI-----------------------FGGQGNT 166
Query: 327 ---IDELKCVWTQHHRPHGRSETMPMLPRNDSTSEFQPL--EDKQVEYFFAS--DASAVI 379
+EL+ ++ Q + ++ S L E F + +
Sbjct: 167 DDYFEELRDLY-QTYHVLVG----DLIKF--SAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 380 EHTNRVIFLEDDDV---AAVKDGSLSIHRLRRSLDDPHGREITILKLEIQEIMKGNYSYF 436
E+ + D D + S + I +++L +Y
Sbjct: 220 ENPSNT---PDKDYLLSIPI---SCPL--------------IGVIQL-------AHYVVT 252
Query: 437 MQKEIFEQPESVVNTMRGRINFETNSVILGGI------------KDYIPEIRRCRRLMM- 483
+ F P + + ++G + G+ + + +R+ ++
Sbjct: 253 AKLLGFT-PGELRSYLKG------ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF 305
Query: 484 IGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLM 543
IG A T LP + D L+ E S M
Sbjct: 306 IGV----RCYEAYPN-----TSLPP--SILEDSLEN----------------NEGVPSPM 338
Query: 544 -ALRYCKARGAL--IVGVTNTVGSSISRESHCGIHI---N-------AGP-------EIG 583
++ + + V TN+ + + I N +GP +
Sbjct: 339 LSISNLT-QEQVQDYVNKTNS---HLPAGKQ--VEISLVNGAKNLVVSGPPQSLYGLNLT 392
Query: 584 VASTKA-----------------YTSQFISLVMFA------LVMCEDRISLQTRRNEI-I 619
+ KA ++++F L + + LV D I+ +N +
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRF--LPVASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 620 KG--LK--VIH----EQIREVLQMDSE--VQQLAKE--------MYEQKSMLLMGRGGYN 661
++ V +R + SE V + + ++ +L G GG
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGG-- 508
Query: 662 YATCMEGALKIKELTYMHSEG-----IMAGELKHGP 692
A + LT+ + +G I+AG L P
Sbjct: 509 -------ASGLGVLTHRNKDGTGVRVIVAGTLDINP 537
Score = 38.9 bits (90), Expect = 0.008
Identities = 40/245 (16%), Positives = 71/245 (28%), Gaps = 76/245 (31%)
Query: 23 VSALE-DEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHN 81
+S L +++Q + + N + V I S VN +
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEI-----------SLVNGA-------KNL----- 377
Query: 82 GIVT-NYKELKAFLTN--KDHRPHGRSET-MPMLPRNDSTS-EFQPLEDKQVEYFFA--- 133
+V+ + L K P G ++ +P R S F P+ +
Sbjct: 378 -VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV--------ASPFH 428
Query: 134 ----SDASAVIEHTNRVIFLERFDRGNC--NCQSLTVPKSKKERRQD-RNKSAVLRTNL- 185
AS +I + + N N + + +P D R S + +
Sbjct: 429 SHLLVPASDLI--------NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV 480
Query: 186 ---------WDILLGLSSSWA---GIEPRGLIEGTDDDVAAVKDGS----LSIHRLRRSL 229
W+ ++ G P G G KDG+ + L +
Sbjct: 481 DCIIRLPVKWETTTQFKATHILDFG--P-GGASGLGVLTHRNKDGTGVRVIVAGTLDINP 537
Query: 230 DDPHG 234
DD +G
Sbjct: 538 DDDYG 542
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.9 bits (139), Expect = 1e-08
Identities = 102/664 (15%), Positives = 193/664 (29%), Gaps = 188/664 (28%)
Query: 57 HGAPSEVNSHP-QRSDIDQTFCVVHNGIVTNYK------ELKAFLTNK--DH---RPHGR 104
H E H Q DI F + V N+ K+ L+ + DH
Sbjct: 5 HHMDFETGEHQYQYKDILSVF---EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 105 SETMPMLPRNDSTSEFQPLEDKQ---VEYFFASD--------ASAVIEHTN-----RVIF 148
S T+ + F L KQ V+ F S + ++
Sbjct: 62 SGTLRL---------FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 149 LERFDRGNCNCQSLT---VPKSKKERRQDRNKSAVLRTNLWDILLGLSSSWAGIEPRG-- 203
+E+ DR + Q V + + + R LR ++ G+ G G
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYL-KLRQALLELRPAKNVLIDGV----LGS---GKT 164
Query: 204 -LIEGT--DDDVAAVKDGS---LSIHRLRRSLDDPHGREITILKLEIQEIMKGNYSYFMQ 257
+ V D L++ LE+ + Y +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV----------LEMLQ----KLLYQID 210
Query: 258 KEIFEQPESVVNTMRGRINFETNSVILGGIKRKIRPKCIVVKLCPNMVDRRGEEV----N 313
+ + N + RI+ + + +K K C++V +++ + + N
Sbjct: 211 PNWTSRSDHSSNI-KLRIH-SIQAELRRLLKSKPYENCLLV-----LLNVQNAKAWNAFN 263
Query: 314 LLCRGSV--RFQSTSIDELKCVWTQH----HRPHG--RSETMPMLPRNDSTSEFQ-PLED 364
L C+ + RF+ D L T H H E +L + P E
Sbjct: 264 LSCKILLTTRFKQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 365 KQVEYFFASDASAVI-EHTNRVIFLED---DDVAAVKDGSLSI---HRLRRSLDD----P 413
S + I + + D + + + SL++ R+ D P
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 414 HGREITILKLEI----------QEIMKG--NYS----------------YF-MQKEIFEQ 444
I + L + ++ YS Y ++ ++ +
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 445 PE---SVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGCGTSYHSAVATRQLLE 501
S+V+ F+++ +I + Y IG +H + + E
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYF--------YSHIG----HH--LKNIEHPE 488
Query: 502 ELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNT 561
+T ++ FLD FR F+ Q +R+ + NT
Sbjct: 489 RMTLFRMV------FLD-----FR-----FLEQ---------KIRHDSTAWNASGSILNT 523
Query: 562 VGSSISRESHCGIHINAG-PEIGV---------ASTKAYTSQFISLVMFALVMCEDRISL 611
+ + + I N E V S++ L+ AL+ ++ I
Sbjct: 524 LQQLKFYKPY--ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Query: 612 QTRR 615
+ +
Sbjct: 582 EAHK 585
Score = 57.9 bits (139), Expect = 1e-08
Identities = 57/386 (14%), Positives = 118/386 (30%), Gaps = 119/386 (30%)
Query: 379 IEHTNRVI-------FLEDDDVAAVKD---GSLSIHRLRRSLDDPHGRE-----ITILKL 423
++ + I F+++ D V+D LS + + L
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 424 E--------IQEIMKGNYSYFMQ--KEIFEQPESVV---NTMRGRINFETNSVILGGIKD 470
+ ++E+++ NY + M K QP + R R+ + N V K
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL-YNDNQVF---AKY 129
Query: 471 YIP------EIRRC-RRLM---------MIGCGTSYHSAVATRQLLEELTELPVMVELAS 514
+ ++R+ L ++G G ++ +A
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW---------------------VAL 168
Query: 515 DFLDRNTPV---FRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESH 571
D + V + F+++ L+ C + ++ + + I
Sbjct: 169 DVC-LSYKVQCKMDFKI-FWLN-----------LKNCNSPETVLEMLQKLL-YQIDPNWT 214
Query: 572 CGIHINAGPEIGVASTKAYTSQFISLVMFA---LVM---------------CEDRISLQT 613
++ ++ + S +A + + + LV+ C +I L T
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC--KILLTT 272
Query: 614 RRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIK 673
R ++ L + +D L + E KS+LL Y C L +
Sbjct: 273 RFKQVTDFLSAAT---TTHISLDHHSMTLTPD--EVKSLLL------KYLDCRPQDLP-R 320
Query: 674 ELTYMHSEGI-MAGELKHGPLALIDN 698
E+ + + + E LA DN
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDN 346
Score = 52.2 bits (124), Expect = 6e-07
Identities = 74/583 (12%), Positives = 158/583 (27%), Gaps = 201/583 (34%)
Query: 336 QHHRPHGRSETMPM-LPRNDSTSEFQPLEDKQVEYFFASDASAVIEHTNRVIFLED-DDV 393
HH H ET D S F+ V+ F D V + ++ E+ D +
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFED---AFVDNF---DCKDVQDMPKSILSKEEIDHI 54
Query: 394 AAVKDGSLSIHRLRRSLDDPHGREITILKLEIQEIMKGNYSYFMQ--KEIFEQPESVV-- 449
KD ++ R ++ +++ ++E+++ NY + M K QP +
Sbjct: 55 IMSKD---AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 450 -NTMRGRINFETNSVILGGIKDYIP------EIRRC-RRLM---------MIGCGTSYHS 492
R R+ + N V K + ++R+ L ++G G ++ +
Sbjct: 112 YIEQRDRL-YNDNQVF---AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 493 AVATR------------------------QLLEELTEL------------------PVMV 510
+LE L +L + +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 511 ELASDFLDR--NTPVFR------DDVC-------F-------FISQSGETADSLMALRYC 548
L R + + +V F ++ + D L A
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 549 KARG-------------ALIVGVTNTVGSSISRESHCGIH------INA----GPE---- 581
+L++ + + RE + I G
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV-LTTNPRRLSIIAESIRDGLATWDN 346
Query: 582 ----------------IGVASTKAYTSQFISLVMF-------ALVMC--------ED--- 607
+ V Y F L +F +++ D
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 608 ------RISLQTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEM---------YEQKSM 652
+ SL ++ + + I E+ L + + ++ +
Sbjct: 407 VVNKLHKYSLVEKQPK--ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 653 LLMGRGGYNYA------TCMEGALKIKELT--YMHSEGIMAGELKHGPLALIDNS--MPV 702
+ Y Y+ +E ++ ++ + +++H A + +
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-DFRFLEQKIRHDSTAWNASGSILNT 523
Query: 703 IM--------ILTRDPVYVKCMNALLQVIFTIFNLKSFFFRSP 737
+ I DP Y + +NA+L F + ++ S
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAILD--F-LPKIEENLICSK 563
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3
PDB: 1viv_A
Length = 186
Score = 54.3 bits (131), Expect = 1e-08
Identities = 27/177 (15%), Positives = 51/177 (28%), Gaps = 39/177 (22%)
Query: 468 IKDYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVF--- 524
I ++ G G S A + A +
Sbjct: 27 ADQLADHILSSHQIFTAGAGRSGLMAKS----------------FAMRLMHMGFNAHIVG 70
Query: 525 --------RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHI 576
D+ S SGET + K+ ++ +T SSI +++ I +
Sbjct: 71 EILTPPLAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRM 130
Query: 577 NAGPE---IGVASTKAYT-SQF--ISLVMF-ALVMCEDRISLQTRRNEIIKGLKVIH 626
P+ G T S F L+ + A+++ L ++ + + H
Sbjct: 131 PGSPKDQSNGSYKTIQPMGSLFEQTLLLFYDAVILK-----LMEKKGLDSETMFTHH 182
>3sho_A Transcriptional regulator, RPIR family; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
1.80A {Sphaerobacter thermophilus}
Length = 187
Score = 51.9 bits (125), Expect = 1e-07
Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 26/166 (15%)
Query: 475 IRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDF-------LDRNTPVFRDD 527
I R ++++G G S AVA L L L + + ++ L P D
Sbjct: 36 ICRADHVIVVGMGFSA--AVA-VFLGHGLNSLGIRTTVLTEGGSTLTITLANLRP---TD 89
Query: 528 VCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEIGVAST 587
+ +S D++ AL RG + +T++ S +R + + S
Sbjct: 90 LMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSVSPPARIADHVLVAATRGVGHSLS- 148
Query: 588 KAYTSQFISLV--MFALVMCEDRISLQTRRNEIIKGLKVIHEQIRE 631
I++V + A + + L+ + RE
Sbjct: 149 --PVGL-IAVVNLLLAEIA-------VREPERALAVLREVDRLYRE 184
>3fxa_A SIS domain protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Length = 201
Score = 50.7 bits (122), Expect = 2e-07
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 525 RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE--- 581
++D+ IS+ G T + L + CK +G+ ++GVT S I++E+ ++ E
Sbjct: 92 KEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDP 151
Query: 582 IGVASTKAYTSQFISLVMF-ALVMC 605
+ +T S + F A+++C
Sbjct: 152 FNMLAT---ASTMAVIASFDAVIVC 173
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA)
sandwich, structural genomics, J center for structural
genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans
c-125}
Length = 243
Score = 49.4 bits (117), Expect = 1e-06
Identities = 24/178 (13%), Positives = 46/178 (25%), Gaps = 29/178 (16%)
Query: 437 MQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGCGTSYHSAVAT 496
M + + + + I+ G + R + G G S+ A
Sbjct: 2 MTSSFTDYCKFFNRILS-EVQETQEQAIIKGAHLVSEAVMNGGRFYVFGSGHSHMIAEEI 60
Query: 497 RQLLEELTELPVMVELASDF-------------------LDRNTPVFRDDVCFFISQSGE 537
L + ++ + V DV IS SG
Sbjct: 61 YNRAGGLALVTAILPPELMLHERPNKSTYLERIEGLSKSYLKLHQVTNKDVIMIISNSGR 120
Query: 538 TADSLMALRYCKARGALIVGVTNTVGSSISRESH---------CGIHINAGPEIGVAS 586
+ + GA ++ +T+ S H + ++ G +G A
Sbjct: 121 NTVPVEMAIESRNIGAKVIAMTSMKHSQKVTSRHKSGKKLYEYADVVLDNGAPVGDAG 178
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide
biogenesis; 2.60A {Escherichia coli}
Length = 183
Score = 48.3 bits (116), Expect = 1e-06
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 525 RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE--- 581
DV IS SGE+++ + K ++ +T SS++R + + + E
Sbjct: 96 PQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVAKEACP 155
Query: 582 IGVASTKAYTSQFISLVM 599
+G+A T +S +LVM
Sbjct: 156 LGLAPT---SSTTATLVM 170
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar,
3-hexulose-6-phosphate isomerase structural genomics;
HET: CME CIT; 2.00A {Methanocaldococcus jannaschii}
SCOP: c.80.1.3
Length = 180
Score = 46.6 bits (111), Expect = 5e-06
Identities = 30/206 (14%), Positives = 59/206 (28%), Gaps = 46/206 (22%)
Query: 437 MQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGCGTSYHSAVAT 496
M K E+ + V N + F TN + I I + +++ + G G S +
Sbjct: 1 MSK--LEELDIVSNNILILKKFYTNDEWKNKLDSLIDRIIKAKKIFIFGVGRSGYIGRC- 57
Query: 497 RQLLEELTELPVMVELASDFLDRNTPVF-----------RDDVCFFISQSGETADSLMAL 545
A + + +DD+ IS SG T L
Sbjct: 58 ---------------FAMRLMHLGFKSYFVGETTTPSYEKDDLLILISGSGRTESVLTVA 102
Query: 546 RYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE----IGVASTKAYTSQFISLVMF- 600
+ K I+ + ++ + I + +G + +L+
Sbjct: 103 KKAKNINNNIIAIV-CECGNVVEFADLTIPLEVKKSKYLPMGTTFEET------ALIFLD 155
Query: 601 ALVMCEDRISLQTRRNEIIKGLKVIH 626
++ + R N + H
Sbjct: 156 LVIAE-----IMKRLNLDESEIIKRH 176
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine
biosynthesis, transferase, glycosyltransferase, gluta
amidotransferase; HET: PIN; 2.00A {Escherichia coli}
SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A*
1ecj_A*
Length = 504
Score = 47.5 bits (114), Expect = 1e-05
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 46 HVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHNGIVTNYKELKAFLTNKDHR 100
++GI H R+ T G+ S + P + + HNG +TN EL+ L + R
Sbjct: 66 NMGIGHVRYPTAGSSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKRR 120
>3etn_A Putative phosphosugar isomerase involved in capsu formation;
YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis
nctc 9343}
Length = 220
Score = 45.8 bits (109), Expect = 2e-05
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 525 RDDVCFFISQSGETADSLMALRYCK--ARGALIVGVTNTVGSSISRESHCGIHINAGPE- 581
+D+ IS SG+T + + + G + +T S ++ ES + E
Sbjct: 106 ENDLLLLISNSGKTREIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLSTGHPAEV 165
Query: 582 --IGVASTKAYTSQFISLVMF-ALVMC 605
+G+ T TS + V+ LV+
Sbjct: 166 CTLGMTPT---TSTTVMTVIGDILVVQ 189
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function;
1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Length = 200
Score = 44.2 bits (105), Expect = 4e-05
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 525 RDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINA----GP 580
DV IS SGET + + K G+ +V VT SS+++ + + +
Sbjct: 89 DQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVVKGKMKQER 148
Query: 581 EIGVASTKAYTSQF--ISLVMF-ALVMC 605
+ ++ + F +++ ALV
Sbjct: 149 DEILSQLAPLGTMFELTAMIFLDALVAE 176
>3mdn_A Glutamine aminotransferase class-II domain protei; structural
genomics, PSI-2, protein structure initiative; 2.09A
{Ruegeria pomeroyi}
Length = 274
Score = 43.2 bits (101), Expect = 1e-04
Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 15/94 (15%)
Query: 8 AADGVDIAIVKKSGKVS-------ALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAP 60
DG +A + A D + + + ++H R +T
Sbjct: 42 NGDGFGVAWYDARPEPGLYRDVYPAWSDPNLRAVAH-----HVRSGLFLSHVRASTGSCI 96
Query: 61 SEVNSHPQRSDIDQTFCVVHNGIVTNYKELKAFL 94
S N HP + +C +HNG V ++ +
Sbjct: 97 SRNNCHPFAAR---RWCFMHNGQVGGFEAFRKQA 127
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine
amidotransferase, prtase, purine biosynthesis,
phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus
subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Length = 459
Score = 42.1 bits (100), Expect = 5e-04
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 8 AADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHP 67
A DG + K G ++ + L ++ I H R+AT G N P
Sbjct: 35 ATDGEKLTAHKGQGLITEVFQN--GELSKVK------GKGAIGHVRYATAGGGGYENVQP 86
Query: 68 --QRSDIDQTFCVVHNGIVTNYKELKAFLTNK 97
RS + + + HNG + N +LK L N+
Sbjct: 87 LLFRSQNNGSLALAHNGNLVNATQLKQQLENQ 118
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum
spherical virus}
Length = 165
Score = 34.3 bits (78), Expect = 0.057
Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 379 IEHTNRVIFLEDDDVAAVKDGSLSIHRLRRSLDDPHGREITILKL-----EIQEIMKGNY 433
I H+ V+ D +A + DG + +++ L HGR ++ + + + GN
Sbjct: 3 IGHSREVLVRLRDILALLADGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAFGNV 62
Query: 434 SYFMQKEIFEQPESVVNTM 452
+ +Q +V+ M
Sbjct: 63 ALVCLSM--DQYRQLVDGM 79
Score = 29.7 bits (66), Expect = 1.9
Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 201 PRG----LIEGTDDDVAAVKDGSLSIHRLRRSLDDPHGREITILKL-----EIQEIMKGN 251
P G ++ D +A + DG + +++ L HGR ++ + + + GN
Sbjct: 2 PIGHSREVLVRLRDILALLADGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAFGN 61
Query: 252 YSYFMQKEIFEQPESVVNTM 271
+ +Q +V+ M
Sbjct: 62 VALVCLSM--DQYRQLVDGM 79
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 34.9 bits (80), Expect = 0.13
Identities = 45/303 (14%), Positives = 76/303 (25%), Gaps = 61/303 (20%)
Query: 463 VILGGIKDYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTP 522
I+GG D+ E G A + E P S
Sbjct: 1128 CIVGGYDDFQEE-------GSFEFGNM--KATSNTLEEFEHGRTP---AEMSRPATTT-- 1173
Query: 523 VFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINA-GPE 581
R+ F +Q +M G I G+ ++ I + P
Sbjct: 1174 --RNG--FMEAQGAGIQ-IIMQADLALKMGVPIYGIVAMAATATD-----KIGRSVPAPG 1223
Query: 582 IGVASTKAYTSQFISLVMFALVMCEDRISLQTRRNEIIKG----LKVIHE---------- 627
G+ +T + L M + L TR +I L+ +
Sbjct: 1224 KGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQ 1283
Query: 628 ----QIREVLQMDSEVQQLAKEMYEQKSMLLMGRGGYNYATCM---EGALKIKELTYM-- 678
R ++ +E + + +Q R L I +L
Sbjct: 1284 NEFLLER-TREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVASF 1342
Query: 679 HSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYV---KCMN-------ALLQVIFTIFN 728
H A + A I+ M + +PV K + + +
Sbjct: 1343 HGTSTKANDK--NESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQI 1400
Query: 729 LKS 731
L S
Sbjct: 1401 LNS 1403
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A
{Escherichia coli} PDB: 2i22_A 1x94_A
Length = 212
Score = 33.5 bits (77), Expect = 0.18
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 527 DVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINA 578
DV IS SG +A+ + A+ + +G ++ +T G ++ + I +
Sbjct: 133 DVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPH 184
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis,
structural genomics, NYSGXRC, LPC1_camje, PSI, protein
structure initiative; 2.10A {Campylobacter jejuni} SCOP:
c.80.1.3
Length = 188
Score = 33.0 bits (76), Expect = 0.21
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 526 DDVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINA 578
DV IS SG++ + L AL+ K L +G++ G +++ + + +
Sbjct: 111 KDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVPS 163
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A
{Burkholderia pseudomallei} PDB: 2x3y_A
Length = 198
Score = 33.1 bits (76), Expect = 0.22
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 527 DVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINA 578
DV S SG++ + L A R KA+G VG T G + + + +
Sbjct: 118 DVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPS 169
>3ezj_A General secretion pathway protein GSPD; general secretory pathway,
secretin, single chain antibody, transport, immune
system, complex; 2.80A {Escherichia coli}
Length = 241
Score = 31.2 bits (70), Expect = 1.0
Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 23/162 (14%)
Query: 333 VWTQHHRPHGRSETMPMLPRNDSTSEFQPL--EDKQVEYFFASDASAVIE------HTNR 384
V + E +P++ + + V + + ++ +
Sbjct: 78 VLKVVKSSAAKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGN 137
Query: 385 VIFLEDDDVAAVKDGSLSIHRLR---RSLDDPHGREITILKL------EIQEIMKGNYSY 435
V+ + +V + + + RL + +D R ++ L EI +++
Sbjct: 138 VVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTKN 197
Query: 436 FMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRR 477
+ + +V R TNSVI+ G ++RR
Sbjct: 198 SGENQPATLKSQIVADER------TNSVIVSGDPATRDKMRR 233
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide
bonding, putative phosphosugar BIND protein, DNAA
binding protein; 1.85A {Escherichia coli}
Length = 196
Score = 30.4 bits (69), Expect = 1.3
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 527 DVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSIS 567
DV IS G + D + A+ R IV +T G ++
Sbjct: 111 DVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELA 151
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 30.6 bits (68), Expect = 1.5
Identities = 25/116 (21%), Positives = 38/116 (32%), Gaps = 25/116 (21%)
Query: 296 IVVKLCPNMVD-RRGEEVNLLCRGSVRFQSTSIDELKCV-WTQHHRPHGRSETMPMLPRN 353
V+ P + R G+ + C QST + V W H ET+ N
Sbjct: 119 WVLPEEPRDLRVRVGDTTQMRCS----IQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSN 174
Query: 354 DSTSEFQPLEDKQVEYFFASDASAVIEHTNRVIFLEDDDVAAVKDGSLSIHRLRRS 409
+ +FQ L NRV D + DGS+ + ++ S
Sbjct: 175 MRSGKFQSLG----------------RFRNRVDLTGDI---SRNDGSIKLQTVKES 211
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC
AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC
CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1
d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Length = 513
Score = 31.2 bits (71), Expect = 1.5
Identities = 11/65 (16%), Positives = 15/65 (23%), Gaps = 6/65 (9%)
Query: 46 HVGIAHTRWAT---HGAPSEVNSHPQRSDIDQTFCVVHNGIVTNYKELKAFLTNKDHRPH 102
A H + RS V G + N EL + L P
Sbjct: 38 DTPQGERSLAATLVHAPSVAPDRAVARSLTGAPTTAVLAGEIYNRDELLSVL---PAGPA 94
Query: 103 GRSET 107
+
Sbjct: 95 PEGDA 99
>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases,
HSP70, actin superfamily, anhydro-N-actetylmuramic acid
binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB:
3qbw_A*
Length = 371
Score = 30.6 bits (70), Expect = 1.7
Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 8/55 (14%)
Query: 9 ADGVDIAIVKKSGKVSAL-------EDEIQTRLKEL-NVEESSATHVGIAHTRWA 55
DG+DI ++++ + + L ++ + L RW
Sbjct: 13 LDGMDIVLIEQGDRTTLLASHYLPMPAGLREDILALCVPGPDEIARAAEVEQRWV 67
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 30.8 bits (69), Expect = 1.7
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 191 GLSSSWAGIEPRGLI--EGTDDDVAAVKDGSLSIHRLRRSLDDPHGREITILKLEI 244
S G R + E D V G+ + L R +++ + + I
Sbjct: 136 QGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATI 191
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A
{Francisella tularensis subsp}
Length = 201
Score = 30.4 bits (69), Expect = 1.7
Identities = 8/41 (19%), Positives = 19/41 (46%)
Query: 527 DVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSIS 567
D+ I+ SG++ + L A+ ++ +T G ++
Sbjct: 116 DILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGGALQ 156
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural
genomics, SIS domain, A/B protein, lipopolysaccharide
biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas
aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Length = 199
Score = 30.0 bits (68), Expect = 2.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 527 DVCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSIS 567
DV IS SG +A+ + A++ R L+V +T G ++
Sbjct: 115 DVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMA 155
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling,
asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A
{Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Length = 553
Score = 30.6 bits (69), Expect = 2.4
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 12/66 (18%)
Query: 46 HVGIAHTRWA----THGAPSEVNSHPQRSDIDQTFCVVHNGIVTNYKELKAFLTNKDHRP 101
+ +AH R + GA P + +T + NG + N++ L+A ++
Sbjct: 42 NAILAHERLSIVDVNAGA------QPLYNQ-QKTHVLAVNGEIYNHQALRAEY-GDRYQF 93
Query: 102 HGRSET 107
S+
Sbjct: 94 QTGSDC 99
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam
synthetase, AS-B, class B asparagine synthetase,
AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP:
c.26.2.1 d.153.1.1 PDB: 1q19_A*
Length = 503
Score = 29.3 bits (66), Expect = 5.1
Identities = 3/30 (10%), Positives = 8/30 (26%)
Query: 78 VVHNGIVTNYKELKAFLTNKDHRPHGRSET 107
G + N L + + ++
Sbjct: 53 AYLIGSLYNRTFLIGLAGVWEGEAYLANDA 82
>3d7i_A Carboxymuconolactone decarboxylase family protein; 1591455,
structural genomics, JOI for structural genomics, JCSG;
HET: MSE PG4; 1.75A {Methanocaldococcus jannaschii}
Length = 105
Score = 27.4 bits (61), Expect = 6.5
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 591 TSQFISLVMFALVMCEDRISLQTRRNEIIKGLKVIHEQIREVLQM 635
T + I++ + A E I Q + +K L + E+I +VL++
Sbjct: 43 TQKLIAIGIVASRCDEVAIEKQMKS--AMKELGITKEEIADVLRV 85
>3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA
polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A
{Drosophila melanogaster} PDB: 3fdf_A 3fmv_A 3omx_A
3omw_A
Length = 198
Score = 27.8 bits (62), Expect = 8.8
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 85 TNYKELKAFLTNKDHRPHGRSETMPMLPRN 114
T Y+++ L +KD + ++ + ML RN
Sbjct: 63 TKYEDIYRDLESKDKEFYTQNGLLHMLDRN 92
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein
transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Length = 148
Score = 27.5 bits (61), Expect = 9.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 482 MMIGCGTSYHSAVATRQLLEELTEL 506
M CG +HS VA + L EL ++
Sbjct: 65 CMNHCGEKFHSEVAKFRFLNELIKV 89
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.392
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,099,045
Number of extensions: 681097
Number of successful extensions: 1789
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1676
Number of HSP's successfully gapped: 82
Length of query: 737
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 636
Effective length of database: 3,881,772
Effective search space: 2468806992
Effective search space used: 2468806992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.3 bits)