RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1919
(737 letters)
>d1moqa_ c.80.1.1 (A:) "Isomerase domain" of glucosamine 6-phosphate
synthase (GLMS) {Escherichia coli [TaxId: 562]}
Length = 366
Score = 262 bits (670), Expect = 1e-81
Identities = 116/296 (39%), Positives = 178/296 (60%), Gaps = 5/296 (1%)
Query: 430 KGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPE-IRRCRRLMMIGCGT 488
KG Y ++MQKEI+EQP ++ NT+ GRI+ V L + E + + + ++ CGT
Sbjct: 3 KGIYRHYMQKEIYEQPNAIKNTLTGRISH--GQVDLSELGPNADELLSKVEHIQILACGT 60
Query: 489 SYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYC 548
SY+S + +R E L +P VE+AS+F R + V R+ + +SQSGETAD+L LR
Sbjct: 61 SYNSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGLRLS 120
Query: 549 KARGAL-IVGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCED 607
K G L + + N GSS+ RES + NAG EIGVASTKA+T+Q L+M +
Sbjct: 121 KELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKLSRL 180
Query: 608 RISLQTRRNEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGGYNYATCME 667
+ + ++I+ GL+ + +I ++L D ++ LA++ ++ L +GR G Y +E
Sbjct: 181 KGLDASIEHDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGR-GDQYPIALE 239
Query: 668 GALKIKELTYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVI 723
GALK+KE++Y+H+E AGELKHGPLALID MPVI++ + + K + + +V
Sbjct: 240 GALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVR 295
Score = 66.7 bits (162), Expect = 2e-12
Identities = 47/349 (13%), Positives = 103/349 (29%), Gaps = 38/349 (10%)
Query: 249 KGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKRKIRPKCIVVKLCPNMVDRR 308
KG Y ++MQKEI+EQP ++ NT+ GRI+ V L + +
Sbjct: 3 KGIYRHYMQKEIYEQPNAIKNTLTGRISH--GQVDLSELGPNADELL-----------SK 49
Query: 309 GEEVNLLCRGSVRFQSTS----IDELKCVWTQHHRPHGRSETMPMLPRNDSTSEFQPLED 364
E + +L G+ + L + + RN +
Sbjct: 50 VEHIQILACGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGE 109
Query: 365 KQ-----VEYFFASDASAVIEHTNRVIFLEDDDVAAVKDGSLSIHRLR----RSLDDPHG 415
+ + N + D +L + S
Sbjct: 110 TADTLAGLRLSKELGYLGSLAICNVP----GSSLVRESDLALMTNAGTEIGVASTKAFTT 165
Query: 416 REITILKLEIQEIMKGNYSYFMQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEI 475
+ +L L + ++ +I +++ + + ++ + I+ +
Sbjct: 166 QLTVLLMLVAKLSRLKGLDASIEHDIVHGLQALPSRIEQMLSQDKR------IEALAEDF 219
Query: 476 RRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDD--VCFFIS 533
+ +G G Y A+ L+E++ + A + + D V
Sbjct: 220 SDKHHALFLGRGDQYPIALEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAP 279
Query: 534 QSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPEI 582
+ + +ARG + + +S ++ I + E+
Sbjct: 280 NNELLEKLKSNIEEVRARGGQLYVFADQDAGFVSSDNMHIIEMPHVEEV 328
>d1j5xa_ c.80.1.1 (A:) Hypothetical protein TM0813 {Thermotoga
maritima [TaxId: 2336]}
Length = 329
Score = 119 bits (298), Expect = 5e-30
Identities = 53/283 (18%), Positives = 102/283 (36%), Gaps = 19/283 (6%)
Query: 437 MQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGCGTSYHSAVAT 496
KEI +Q + + + I I+ + + ++ +GCG+SY+ A+
Sbjct: 3 TLKEITDQKNELKKFFENFVLNLEKTEIFSEIQKNLTD-----EVLFVGCGSSYNLALTI 57
Query: 497 RQLLEELTELPVMVELASDFLDRNTPVFR-DDVCFFISQSGETADSLMALRYCKARGALI 555
E + ++ A + + P + F S++G T + L+A K R
Sbjct: 58 SYYFERVLKIRTKAIPAGEVAFQKIPDLEERGLAFLFSRTGNTTEVLLANDVLKKRNHRT 117
Query: 556 VGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTRR 615
+G+T S +++ES + E V TK+++ +SL+ A + + +
Sbjct: 118 IGITIEEESRLAKESDLPLVFPVREEAIVM-TKSFSMILLSLMFLADKIAGNSTERFSEL 176
Query: 616 NEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIKEL 675
I ++ E K ++ + + +E ALK E+
Sbjct: 177 VGYSPEFFDISWKVIE------------KIDLKEHDHFVFLGMSEFFGVSLESALKCIEM 224
Query: 676 TYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNA 718
+ SE E +HGP AL+ V M +
Sbjct: 225 SLTFSEAYSTLEYRHGPKALVKKGTLVFMQKVSGMDEQEKRLR 267
Score = 40.4 bits (93), Expect = 5e-04
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 256 MQKEIFEQPESVVNTMRGRINFETNSVILGGIKRKIRPKCIVV 298
KEI +Q + + + I I++ + + + V
Sbjct: 3 TLKEITDQKNELKKFFENFVLNLEKTEIFSEIQKNLTDEVLFV 45
>d1x9ia_ c.80.1.1 (A:) Glucose-6-phosphate isomerase, conjectural
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 300
Score = 101 bits (251), Expect = 5e-24
Identities = 35/294 (11%), Positives = 85/294 (28%), Gaps = 40/294 (13%)
Query: 437 MQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGCGTSYHSAVAT 496
+ ++ ++ + ++ ++ I RL + G G S A
Sbjct: 3 LLQDYLNWENYILRRVDFPTSYVVEGEVV--------RIEAMPRLYISGMGGSGVVADLI 54
Query: 497 RQLLEEL-TELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALI 555
R E+ V+ R+ + +S SG T ++L + Y K R
Sbjct: 55 RDFSLTWNWEVEVIAVKDYFLKARD------GLLIAVSYSGNTIETLYTVEYAKRRRIPA 108
Query: 556 VGVTNTVGSSISRESHCGIHINAGPEIGVASTKAYTSQFISLVMFALVMCEDRISLQTRR 615
V +T G +++ + + A + T+
Sbjct: 109 VAITT--GGRLAQMGVPTVIVPKASAPRAALPQLLTAAL--------------------- 145
Query: 616 NEIIKGLKVIHEQIREVLQMDSEVQQLAKEMYEQKSMLLMGRGGYNYATCMEGALKIKEL 675
++ + I +I E L+ +E QK ++ + E
Sbjct: 146 -HVVAKVYGIDVKIPEGLEPPNEALIHKLVEEFQKRPTIIAAESM-RGVAYRVKNEFNEN 203
Query: 676 TYMHSEGIMAGELKHGPLALIDNSMPVIMILTRDPVYVKCMNALLQVIFTIFNL 729
+ + E H + + ++ + + + + A ++++
Sbjct: 204 AKIEPSVEILPEAHHNWIEGSERAVVALTSPHIPKEHQERVKATVEIVGGSIYA 257
>d1nria_ c.80.1.3 (A:) Hypothetical protein HI0754 {Haemophilus
influenzae [TaxId: 727]}
Length = 248
Score = 62.8 bits (152), Expect = 1e-11
Identities = 35/193 (18%), Positives = 68/193 (35%), Gaps = 29/193 (15%)
Query: 437 MQKEIFEQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGCGTSYHSAVAT 496
+ + + E+ + V + + I ++ + ++ RL+ IG GTS V
Sbjct: 24 IVRLMNEEDKLVPLAIESCL-----PQISLAVEQIVQAFQQGGRLIYIGAGTSGRLGVLD 78
Query: 497 RQLLEELTELP----VMVELASDFLDRNTP------------------VFRDDVCFFISQ 534
+ + + R+ ++DV I+
Sbjct: 79 ASECPPTFGVSTEMVKGIIAGGECAIRHPVEGAEDNTKAVLNDLQSIHFSKNDVLVGIAA 138
Query: 535 SGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE--IGVASTKAYTS 592
SG T + L+Y K+ GAL + + + S ++ + I GPE G + K+ T+
Sbjct: 139 SGRTPYVIAGLQYAKSLGALTISIASNPKSEMAEIADIAIETIVGPEILTGSSRLKSGTA 198
Query: 593 QFISLVMFALVMC 605
Q + L M
Sbjct: 199 QKMVLNMLTTASM 211
>d1te5a_ d.153.1.1 (A:) Hypothetical protein YafJ (PA1307)
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 253
Score = 55.2 bits (132), Expect = 6e-09
Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 14/105 (13%)
Query: 10 DGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHP-Q 68
+G + + + + E+ ++ ++ + I H R A G N+HP
Sbjct: 41 EGRGVRLFQDPLASV--DSEVARLVQRFPIK----SETVIGHIRQANVGKVGLSNTHPFI 94
Query: 69 RSDIDQTFCVVHNGIVTNYKELKAFLTNKDHRPHGR--SETMPML 111
R + + HNG + +++ F RP G SE
Sbjct: 95 RELGGRYWTFAHNGQLADFQPKPGFY-----RPVGETDSEAAFCD 134
>d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis
[TaxId: 1423]}
Length = 186
Score = 53.3 bits (127), Expect = 1e-08
Identities = 25/162 (15%), Positives = 49/162 (30%), Gaps = 9/162 (5%)
Query: 468 IKDYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEELTELPVMVELASDFLDRNTPVFRDD 527
I ++ G G S A + L + + + L P+ D
Sbjct: 27 ADQLADHILSSHQIFTAGAGRSGLMA---KSFAMRLMHMGFNAHIVGEILTP--PLAEGD 81
Query: 528 VCFFISQSGETADSLMALRYCKARGALIVGVTNTVGSSISRESHCGIHINAGPE---IGV 584
+ S SGET + K+ ++ +T SSI +++ I + P+ G
Sbjct: 82 LVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPGSPKDQSNGS 141
Query: 585 ASTKAYTSQFISLVMFALVMCEDRISLQTRRNEIIKGLKVIH 626
T + + L ++ + + H
Sbjct: 142 YKTIQPMGSLFEQTLLLFYDAV-ILKLMEKKGLDSETMFTHH 182
>d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 238
Score = 53.3 bits (127), Expect = 2e-08
Identities = 49/182 (26%), Positives = 73/182 (40%), Gaps = 44/182 (24%)
Query: 10 DGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSAT-HVGIAHTRWATHGAPSEVNSHPQ 68
D +A+V G ++ L + ++ EE GIAHTRWATHG PSEVN+HP
Sbjct: 29 DSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWATHGEPSEVNAHPH 88
Query: 69 RSDIDQTFCVVHNGIVTNYKELKAFLTNKDHRPHGRSETMPM------------------ 110
S+ VVHNGI+ N++ L+ L + + ++T +
Sbjct: 89 VSEH---IVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAV 145
Query: 111 ---LPRNDSTSEFQPLED-------------------KQVEYFFASDASAVIEHTNRVIF 148
+P+ ++ E F ASD A++ T R IF
Sbjct: 146 LRAIPQLRGAYGTVIMDSRHPDTLLAARSGSPLVIGLGMGENFIASDQLALLPVTRRFIF 205
Query: 149 LE 150
LE
Sbjct: 206 LE 207
Score = 43.7 bits (102), Expect = 3e-05
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 365 KQVEYFFASDASAVIEHTNRVIFLEDDDVAAVKDGSLSIHRLRRSLDDPHGREITILKLE 424
E F ASD A++ T R IFLE+ D+A + S++I D G E+ +E
Sbjct: 183 GMGENFIASDQLALLPVTRRFIFLEEGDIAEITRRSVNIF-------DKTGAEVKRQDIE 235
Query: 425 IQ 426
Sbjct: 236 SN 237
>d1jeoa_ c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isomerase
MJ1247 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 177
Score = 51.7 bits (123), Expect = 3e-08
Identities = 31/185 (16%), Positives = 56/185 (30%), Gaps = 14/185 (7%)
Query: 443 EQPESVVNTMRGRINFETNSVILGGIKDYIPEIRRCRRLMMIGCGTSYHSAVATRQLLEE 502
E+ + V N + F TN + I I + +++ + G G S + R
Sbjct: 2 EELDIVSNNILILKKFYTNDEWKNKLDSLIDRIIKAKKIFIFGVGRSGYIG---RCFAMR 58
Query: 503 LTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADSLMALRYCKARGALIVGVTNTV 562
L L + +DD+ IS SG T L + K I+ +
Sbjct: 59 LMHLGFKSYFVGET--TTPSYEKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVCEC 116
Query: 563 GSSISRESHCGIHINAGP-EIGVASTKAYTSQFISLVMFALVMCEDRISLQTRRNEIIKG 621
++ + I + + T + I L + + R N
Sbjct: 117 -GNVVEFADLTIPLEVKKSKYLPMGTTFEETALIFLDLVI-------AEIMKRLNLDESE 168
Query: 622 LKVIH 626
+ H
Sbjct: 169 IIKRH 173
>d1ecfa2 d.153.1.1 (A:1-249) Glutamine PRPP amidotransferase,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 249
Score = 45.2 bits (106), Expect = 1e-05
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
Query: 10 DGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQR 69
D + ++K+ + + E + ++GI H R+ T G+ S + P
Sbjct: 37 DANNCFRLRKANGLVSDVFE-------ARHMQRLQGNMGIGHVRYPTAGSSSASEAQPFY 89
Query: 70 SDIDQTFCVVHNGIVTNYKELKAFLTNKDHRP 101
+ + HNG +TN EL+ L + R
Sbjct: 90 VNSPYGITLAHNGNLTNAHELRKKLFEEKRRH 121
Score = 29.4 bits (65), Expect = 1.5
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 368 EYFFASDASAVIEHTNRVIF-LEDDDVAAV-KDGSLSIHR 405
EY AS++ A+ + + + + ++G L +
Sbjct: 203 EYMVASESVALDTLGFDFLRDVAPGEAIYITEEGQLFTRQ 242
>d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase,
N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Length = 234
Score = 38.8 bits (89), Expect = 0.001
Identities = 26/152 (17%), Positives = 44/152 (28%), Gaps = 2/152 (1%)
Query: 10 DGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVGIAHTRWATHGAPSEVNSHPQR 69
+G I + + T + + I H R+AT G N P
Sbjct: 29 EGAGIVATDGEKLTAHKGQGLITEVFQNGELSKVKGKGAIGHVRYATAGGGGYENVQPLL 88
Query: 70 SDIDQT--FCVVHNGIVTNYKELKAFLTNKDHRPHGRSETMPMLPRNDSTSEFQPLEDKQ 127
+ HNG + N +LK L N+ S+T + + F + +
Sbjct: 89 FRSQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKRSGHFTLKDQIK 148
Query: 128 VEYFFASDASAVIEHTNRVIFLERFDRGNCNC 159
A A + T + + G
Sbjct: 149 NSLSMLKGAYAFLIMTETEMIVALDPNGLRPL 180
Score = 33.0 bits (74), Expect = 0.097
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 368 EYFFASDASAVIEHTNRVIF-LEDDDVAAVKDGSLSIHR 405
Y AS+ A + +E ++ + D + R
Sbjct: 188 AYVVASETCAFDVVGATYLREVEPGEMLIINDEGMKSER 226
>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium
carotovorum [TaxId: 554]}
Length = 204
Score = 38.4 bits (89), Expect = 0.001
Identities = 4/51 (7%), Positives = 13/51 (25%)
Query: 57 HGAPSEVNSHPQRSDIDQTFCVVHNGIVTNYKELKAFLTNKDHRPHGRSET 107
+G + + + G + N L + + ++
Sbjct: 31 NGYLFIEQNGHYQKCEMERGTAYLIGSLYNRTFLIGLAGVWEGEAYLANDA 81
>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces
clavuligerus [TaxId: 1901]}
Length = 206
Score = 38.2 bits (88), Expect = 0.001
Identities = 13/88 (14%), Positives = 22/88 (25%), Gaps = 12/88 (13%)
Query: 29 EIQTRLKELNVEESSATH---VGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHNGIVT 85
TR +++ + H AP + V G +
Sbjct: 24 VFATRGSHTDIDTPQGERSLAATLVHAPSV---APDRAVARSLTGA---PTTAVLAGEIY 77
Query: 86 NYKELKAFLTNKDHRPHGRSETMPMLPR 113
N EL + L P + +L
Sbjct: 78 NRDELLSVL---PAGPAPEGDAELVLRL 102
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 30.1 bits (67), Expect = 0.63
Identities = 7/39 (17%), Positives = 16/39 (41%)
Query: 10 DGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVG 48
V++ V + G + ++ ++ EE S +V
Sbjct: 173 GSVNLYHVTEDGWIYHGNHDVGELFWKVKEEEGSFNNVI 211
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 145
Score = 28.6 bits (64), Expect = 1.6
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 482 MMIGCGTSYHSAVATRQLLEELTEL 506
M CG +H V + L EL ++
Sbjct: 72 CMKSCGKRFHDEVGKFRFLNELIKV 96
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 241
Score = 28.9 bits (64), Expect = 1.9
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 9 ADGVDIAIVKKSGKVSAL-EDEIQTRLKELNVEES 42
A ++I +VK + AL +EI + ++ E+
Sbjct: 205 AKNIEITVVKPDSDIVALSSEEINQYVTQIEQEKQ 239
>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase,
N-terminal domain {Azospirillum brasilense [TaxId: 192]}
Length = 422
Score = 28.0 bits (62), Expect = 4.3
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 37 LNVEESSATHVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHNGIVTNYK 88
++E + I H R++T+ P+ + P R + HNG + K
Sbjct: 194 DLLDERFESDFAIYHQRYSTNTFPTWPLAQPFR-------MLAHNGEINTVK 238
>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 192
Score = 27.6 bits (60), Expect = 4.7
Identities = 14/137 (10%), Positives = 38/137 (27%), Gaps = 35/137 (25%)
Query: 46 HVGIAHTRWATHGAPSEVNSHPQRSDIDQTFCVVHNGIVTNYKELKAFLTNKDHRP---- 101
+ +AH R + + + T + NG + N++ L+A ++
Sbjct: 42 NAILAHERLSIVDVNAGAQPLYNQQK---THVLAVNGEIYNHQALRAEYGDRYQFQTGSD 98
Query: 102 ---------------------------HGRSETMPMLPRN-DSTSEFQPLEDKQVEYFFA 133
+ + ++ R+ D+ + + A
Sbjct: 99 CEVILALYQEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVA 158
Query: 134 SDASAVIEHTNRVIFLE 150
S+ A++ +
Sbjct: 159 SEMKALVPVCRTIKEFP 175
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 27.7 bits (61), Expect = 4.9
Identities = 6/34 (17%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 9 ADGVDIAIVKKSGKVSAL-EDEIQTRLKELNVEE 41
+++A++++ + L +EI+ + E+ E+
Sbjct: 202 GKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEK 235
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 27.1 bits (60), Expect = 5.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 482 MMIGCGTSYHSAVATRQLLEELTEL 506
M CG +HS VA + L EL ++
Sbjct: 65 CMNHCGEKFHSEVAKFRFLNELIKV 89
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 243
Score = 27.0 bits (59), Expect = 6.7
Identities = 4/29 (13%), Positives = 13/29 (44%)
Query: 9 ADGVDIAIVKKSGKVSALEDEIQTRLKEL 37
+ +++ + K + + I+ RL +
Sbjct: 211 KNDLEVGVATKDKFFTLSAENIEERLVAI 239
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 233
Score = 27.0 bits (59), Expect = 7.2
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 9 ADGVDIAIVKKSGKVSALEDEIQTRLKEL 37
D +++ I ++G E++ L +
Sbjct: 204 EDNIEVGICNEAGFRRLTPTEVKDYLAAI 232
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 151
Score = 26.3 bits (58), Expect = 7.7
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 482 MMIGCGTSYHSAVATRQLLEELTEL 506
M CG +H+ V + L EL ++
Sbjct: 66 CMKNCGRRFHNEVGKFRFLNELIKV 90
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 26.5 bits (58), Expect = 9.6
Identities = 5/30 (16%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 9 ADGVDIAIVKKSGKVSAL-EDEIQTRLKEL 37
A +++A V+ ++E++ +K++
Sbjct: 205 ATNIELATVQPGQNFHMFTKEELEEVIKDI 234
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.392
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,669,127
Number of extensions: 125647
Number of successful extensions: 387
Number of sequences better than 10.0: 1
Number of HSP's gapped: 377
Number of HSP's successfully gapped: 32
Length of query: 737
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 645
Effective length of database: 1,144,436
Effective search space: 738161220
Effective search space used: 738161220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.0 bits)