RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy192
(898 letters)
>gnl|CDD|214720 smart00557, IG_FLMN, Filamin-type immunoglobulin domains. These
form a rod-like structure in the actin-binding
cytoskeleton protein, filamin. The C-terminal repeats of
filamin bind beta1-integrin (CD29).
Length = 93
Score = 110 bits (277), Expect = 6e-29
Identities = 46/93 (49%), Positives = 59/93 (63%), Gaps = 2/93 (2%)
Query: 208 AHRVHAGGPGLERGEQNQPCEFNVWTREAGAGSLAISVEGPS--KAEIDFKDRKDGSCYV 265
A +V A GPGLE+G +P EF V TR+AG G L + V GPS K ++ KD DG+ V
Sbjct: 1 ASKVKASGPGLEKGVVGEPAEFTVDTRDAGGGELEVEVTGPSGKKVPVEVKDNGDGTYTV 60
Query: 266 SYVVAEPGEYRVGIKFNDQHIPDSPYKLFVSPA 298
SY EPG+Y V +KF +HIP SP+ + V PA
Sbjct: 61 SYTPTEPGDYTVTVKFGGEHIPGSPFTVKVGPA 93
Score = 96.9 bits (242), Expect = 4e-24
Identities = 46/103 (44%), Positives = 55/103 (53%), Gaps = 15/103 (14%)
Query: 567 YVTAYGPGLISGVSGEPCLFTISTKGAGAGSPFQFTVGPLRDGGLSMAVEGPS--KAEIT 624
V A GPGL GV GEP FT+ T+ AG G L + V GPS K +
Sbjct: 3 KVKASGPGLEKGVVGEPAEFTVDTRDAGGG-------------ELEVEVTGPSGKKVPVE 49
Query: 625 YHDNKDGTVAVSYLPTAPGEYKIAVKFGEKHIKGSPYLAKITG 667
DN DGT VSY PT PG+Y + VKFG +HI GSP+ K+
Sbjct: 50 VKDNGDGTYTVSYTPTEPGDYTVTVKFGGEHIPGSPFTVKVGP 92
Score = 92.7 bits (231), Expect = 1e-22
Identities = 41/92 (44%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 397 PAAVHATGNGLAEIKSGVKTDFIVDTCNAGAGTLAVTIDGPS--KVSMDCTEVEEG-YKV 453
+ V A+G GL + G +F VDT +AG G L V + GPS KV ++ + +G Y V
Sbjct: 1 ASKVKASGPGLEKGVVGEPAEFTVDTRDAGGGELEVEVTGPSGKKVPVEVKDNGDGTYTV 60
Query: 454 RYTPLVPGDYYVSLKYNGYHIVGSPFKVKCTG 485
YTP PGDY V++K+ G HI GSPF VK
Sbjct: 61 SYTPTEPGDYTVTVKFGGEHIPGSPFTVKVGP 92
Score = 86.1 bits (214), Expect = 2e-20
Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 804 PAAVHATGNGLAEIKSGVKTDFIVDTCNAGAGTLAVTIDGPSKVSVKKYKDEIFTRHTGR 863
+ V A+G GL + G +F VDT +AG G L V + GPS V + + G
Sbjct: 1 ASKVKASGPGLEKGVVGEPAEFTVDTRDAGGGELEVEVTGPSGKKV-----PVEVKDNGD 55
Query: 864 NNFEVKYIVRDRGEYLLIVKWGDDHIPGSPFKVEV 898
+ V Y + G+Y + VK+G +HIPGSPF V+V
Sbjct: 56 GTYTVSYTPTEPGDYTVTVKFGGEHIPGSPFTVKV 90
Score = 80.0 bits (198), Expect = 3e-18
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 316 MADKPTQFLVRKNGA-VGALDAKVISPSGTEDDCFIQPIDGDNYSIRFMPRENGIHNIHI 374
+ +P +F V A G L+ +V PSG + ++ Y++ + P E G + + +
Sbjct: 15 VVGEPAEFTVDTRDAGGGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTV 74
Query: 375 KFNGVHIPGSPLRIKVG 391
KF G HIPGSP +KVG
Sbjct: 75 KFGGEHIPGSPFTVKVG 91
Score = 74.2 bits (183), Expect = 3e-16
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 44 GYGGLSLSIEGPS--KAEIQCKDNADGSLNISYRPTEPGYYIINLKFADHHVEGSPFTAK 101
G G L + + GPS K ++ KDN DG+ +SY PTEPG Y + +KF H+ GSPFT K
Sbjct: 30 GGGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFGGEHIPGSPFTVK 89
Query: 102 IVG 104
+
Sbjct: 90 VGP 92
Score = 71.1 bits (175), Expect = 4e-15
Identities = 26/60 (43%), Positives = 34/60 (56%)
Query: 143 DLSATVTSPGGVTEDAEINEVEDGLYAVHFVPKELGVHTVSVRYKDIHIPGSPFQFTVGP 202
+L VT P G E+ + DG Y V + P E G +TV+V++ HIPGSPF VGP
Sbjct: 33 ELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFGGEHIPGSPFTVKVGP 92
Score = 67.2 bits (165), Expect = 1e-13
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 697 LNASIQAPSGLEEPCFLKKIPNGNLGISFTPREVGSHLVSVKKMGVHIKNSPFKINVGE 755
L + PSG + P +K +G +S+TP E G + V+VK G HI SPF + VG
Sbjct: 34 LEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFGGEHIPGSPFTVKVGP 92
Score = 48.4 bits (116), Expect = 5e-07
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 2 PSGNVDKPVIEDNHDGTVSLHYDPREEGLHELALKFNGDHVQG 44
PSG ++DN DGT ++ Y P E G + + +KF G+H+ G
Sbjct: 41 PSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFGGEHIPG 83
>gnl|CDD|216033 pfam00630, Filamin, Filamin/ABP280 repeat.
Length = 93
Score = 88.5 bits (220), Expect = 3e-21
Identities = 42/90 (46%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 208 AHRVHAGGPGLERGEQNQPCEFNVWTREAGAG---SLAISVEGPS--KAEIDFKDRKDGS 262
+V A GPGLE +P EF V TR+AG G + V GPS K ++ D DG+
Sbjct: 4 PSKVKASGPGLEGVVVGKPAEFTVDTRDAGGGPVTGFDVEVTGPSGSKVPVEVIDNGDGT 63
Query: 263 CYVSYVVAEPGEYRVGIKFNDQHIPDSPYK 292
VSY EPG+Y V +KFN QHIP SP+K
Sbjct: 64 YTVSYTPTEPGDYTVSVKFNGQHIPGSPFK 93
Score = 83.5 bits (207), Expect = 2e-19
Identities = 43/96 (44%), Positives = 52/96 (54%), Gaps = 12/96 (12%)
Query: 568 VTAYGPGLISGVSGEPCLFTISTKGAGAGSPFQFTVGPLRDGGLSMAVEGPS--KAEITY 625
V A GPGL V G+P FT+ T+ AG G F V V GPS K +
Sbjct: 7 VKASGPGLEGVVVGKPAEFTVDTRDAGGGPVTGFDV----------EVTGPSGSKVPVEV 56
Query: 626 HDNKDGTVAVSYLPTAPGEYKIAVKFGEKHIKGSPY 661
DN DGT VSY PT PG+Y ++VKF +HI GSP+
Sbjct: 57 IDNGDGTYTVSYTPTEPGDYTVSVKFNGQHIPGSPF 92
Score = 79.3 bits (196), Expect = 6e-18
Identities = 44/92 (47%), Positives = 56/92 (60%), Gaps = 6/92 (6%)
Query: 395 ADPAAVHATGNGLAEIKSGVKTDFIVDTCNAGAG---TLAVTIDGPS--KVSMDCTEVEE 449
ADP+ V A+G GL + G +F VDT +AG G V + GPS KV ++ + +
Sbjct: 2 ADPSKVKASGPGLEGVVVGKPAEFTVDTRDAGGGPVTGFDVEVTGPSGSKVPVEVIDNGD 61
Query: 450 G-YKVRYTPLVPGDYYVSLKYNGYHIVGSPFK 480
G Y V YTP PGDY VS+K+NG HI GSPFK
Sbjct: 62 GTYTVSYTPTEPGDYTVSVKFNGQHIPGSPFK 93
Score = 67.4 bits (165), Expect = 9e-14
Identities = 36/97 (37%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 802 ADPAAVHATGNGLAEIKSGVKTDFIVDTCNAGAG---TLAVTIDGPSKVSVKKYKDEIFT 858
ADP+ V A+G GL + G +F VDT +AG G V + GPS V +
Sbjct: 2 ADPSKVKASGPGLEGVVVGKPAEFTVDTRDAGGGPVTGFDVEVTGPSGSKV-----PVEV 56
Query: 859 RHTGRNNFEVKYIVRDRGEYLLIVKWGDDHIPGSPFK 895
G + V Y + G+Y + VK+ HIPGSPFK
Sbjct: 57 IDNGDGTYTVSYTPTEPGDYTVSVKFNGQHIPGSPFK 93
Score = 67.0 bits (164), Expect = 1e-13
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 315 VMADKPTQFLVRKNGAVG----ALDAKVISPSGTEDDCFIQPIDGDNYSIRFMPRENGIH 370
V+ KP +F V A G D +V PSG++ + Y++ + P E G +
Sbjct: 17 VVVGKPAEFTVDTRDAGGGPVTGFDVEVTGPSGSKVPVEVIDNGDGTYTVSYTPTEPGDY 76
Query: 371 NIHIKFNGVHIPGSP 385
+ +KFNG HIPGSP
Sbjct: 77 TVSVKFNGQHIPGSP 91
Score = 62.7 bits (153), Expect = 4e-12
Identities = 23/54 (42%), Positives = 29/54 (53%)
Query: 143 DLSATVTSPGGVTEDAEINEVEDGLYAVHFVPKELGVHTVSVRYKDIHIPGSPF 196
VT P G E+ + DG Y V + P E G +TVSV++ HIPGSPF
Sbjct: 39 GFDVEVTGPSGSKVPVEVIDNGDGTYTVSYTPTEPGDYTVSVKFNGQHIPGSPF 92
Score = 60.0 bits (146), Expect = 4e-11
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 48 LSLSIEGPS--KAEIQCKDNADGSLNISYRPTEPGYYIINLKFADHHVEGSPFT 99
+ + GPS K ++ DN DG+ +SY PTEPG Y +++KF H+ GSPF
Sbjct: 40 FDVEVTGPSGSKVPVEVIDNGDGTYTVSYTPTEPGDYTVSVKFNGQHIPGSPFK 93
Score = 52.7 bits (127), Expect = 1e-08
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 694 IRSLNASIQAPSGLEEPCFLKKIPNGNLGISFTPREVGSHLVSVKKMGVHIKNSPFK 750
+ + + PSG + P + +G +S+TP E G + VSVK G HI SPFK
Sbjct: 37 VTGFDVEVTGPSGSKVPVEVIDNGDGTYTVSYTPTEPGDYTVSVKFNGQHIPGSPFK 93
Score = 44.2 bits (105), Expect = 1e-05
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 2 PSGNVDKPVIEDNHDGTVSLHYDPREEGLHELALKFNGDHVQG 44
PSG+ + DN DGT ++ Y P E G + +++KFNG H+ G
Sbjct: 47 PSGSKVPVEVIDNGDGTYTVSYTPTEPGDYTVSVKFNGQHIPG 89
>gnl|CDD|172498 PRK13997, PRK13997, potassium-transporting ATPase subunit C;
Provisional.
Length = 193
Score = 31.1 bits (70), Expect = 1.7
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 17/81 (20%)
Query: 63 KDNADGSLNISYRPTEPGYYIINLKFAD---HHVEGSPFTAKIVGEGSN---------RQ 110
KDNADGSL + + G +I F D H S K GSN +
Sbjct: 39 KDNADGSLIYNDKNEVIGSKLIGQNFTDPRYFHGRVSSIEYKAEASGSNNYAPSNPDLEK 98
Query: 111 R-----EKIQRQREAVPVTEV 126
R E+ ++Q +VPVTEV
Sbjct: 99 RVEKSIEEWKKQNPSVPVTEV 119
>gnl|CDD|223385 COG0308, PepN, Aminopeptidase N [Amino acid transport and
metabolism].
Length = 859
Score = 31.7 bits (72), Expect = 2.2
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 480 KVKCTGKDLGERGGQETSSVTVETVQKVAKNKTQGPVIPI---FKSDASKVTCKGMGLKK 536
VK GK L + ++T+ + + + + I F S T GL +
Sbjct: 70 SVKIDGKALTAWYRLDGDALTITVAPPIPERSERPFTLAITYEFTGPVSNDT--LEGLYR 127
Query: 537 AYAQKQNMFTIHCQDAGS 554
+ + C+ G+
Sbjct: 128 SGYGGKPYLITQCEAEGA 145
>gnl|CDD|236460 PRK09300, PRK09300, tRNA splicing endonuclease; Reviewed.
Length = 330
Score = 30.3 bits (69), Expect = 4.5
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
Query: 854 DEIFTRHTGRNNFEVKYIV----RDRGEYL 879
++F R + R NFE++Y+V R+RG Y+
Sbjct: 59 RDLFARASLRPNFELRYLVYKDLRERGYYV 88
>gnl|CDD|213379 cd12194, Kcc4p_like_C, C-terminal kinase associated domain 1 (KA1),
a phospholipid binding domain, of Kcc4p and similar
proteins. This subfamily is composed of three
Saccharomyces cerevisiae proteins, Kcc4p, Gin4p, and
Hsl1p, as well as similar serine/threonine protein
kinases (STKs). They catalyze the transfer of the
gamma-phosphoryl group from ATP to S/T residues on
protein substrates. Kcc4p, Gin4p, and Hsl1p are
septin-associated proteins that are involved in septin
organization and in the yeast morphogenesis checkpoint
coordinating the cell cycle with bud formation. They
negatively regulate the Wee1-related kinase Swe1, which
phosphorylates the cyclin-dependent kinase Cdc28, and is
involved in regulating the entry of cells into mitosis.
Kcc4p, Gin4p, and Hsl1p localize in the bud neck in a
septin-dependent manner and display distinct but
partially overlapping functions. They contain an
N-terminal catalytic kinase domain and a C-terminal KA1
domain. The KA1 domain of Kcc4p, Gin4p, and Hsl1p binds
acidic phospholipids including phosphatidylserine
(PtdSer) and is required for bud neck localization.
Length = 122
Score = 28.4 bits (64), Expect = 7.7
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 650 KFGEKHIKGSPYLAKITGEGRKRNQISVGSC 680
K+G K++K ITG+ N +S+ S
Sbjct: 48 KYGLKNLKSDSSSYTITGKLSSDNSLSLKST 78
>gnl|CDD|219085 pfam06551, DUF1120, Protein of unknown function (DUF1120). This
family consists of several hypothetical bacterial
proteins of unknown function.
Length = 116
Score = 28.3 bits (63), Expect = 8.3
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 590 TKGAGAGSPFQFTVGPLRDGGLSMAVEGPSKAEITYHDNKDGT 632
T A SP +T ++ L++ P+K +T DN+ T
Sbjct: 26 TISVSALSPTDYTQLGTKNISLTITCTAPTKIAVTATDNRMDT 68
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.136 0.402
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 45,490,500
Number of extensions: 4530870
Number of successful extensions: 2390
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2377
Number of HSP's successfully gapped: 30
Length of query: 898
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 792
Effective length of database: 6,236,078
Effective search space: 4938973776
Effective search space used: 4938973776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (28.3 bits)