BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1922
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GWP|A Chain A, Structure Of The Mediator Head Module From S. Cerevisiae
pdb|4GWQ|A Chain A, Structure Of The Mediator Head Module From S. Cerevisiae
In Complex With The Carboxy-Terminal Domain (Ctd) Of Rna
Polymerase Ii Rpb1 Subunit
Length = 115
Score = 29.3 bits (64), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 16/76 (21%)
Query: 60 IQTRLKELN----------VEESSATHVLGRLFPFDDRG--LVHAYWAPNFWAFYNTADK 107
IQ RLK LN E S T + G L RG V + + FY DK
Sbjct: 6 IQERLKSLNDIETQLCSMLQEASQVTFIFGEL----KRGNESVKPQFENHVKQFYERLDK 61
Query: 108 AAVVLGKRFHLISSNV 123
+ L K L+ NV
Sbjct: 62 STTQLRKEIQLLDENV 77
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 29.3 bits (64), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 52 KVSALEDEIQTRLKELNVEESSATHVLGRLFPFDDRGLVHAYWAPNFWAFYNTADKAAVV 111
++ L E+ ++NV E +V G+ +PF RG W P + YN +
Sbjct: 84 RILRLSKELGIETYKVNVNERLVQYVKGKTYPF--RGAFPPVWNPLAYLDYNNLWRTMDE 141
Query: 112 LGK 114
+GK
Sbjct: 142 MGK 144
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 29.3 bits (64), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 9/107 (8%)
Query: 11 GVDIAIVKKSGKVSALEDEIQTRIALDAADGVDIA---IVKKSGKVSALEDEIQTRLKEL 67
GV + +++ +V I+ + D VD+ + ++ L E+ ++
Sbjct: 25 GVSVLVLEARDRVGGRTYTIRN----EHVDYVDVGGAYVGPTQNRILRLSKELGIETYKV 80
Query: 68 NVEESSATHVLGRLFPFDDRGLVHAYWAPNFWAFYNTADKAAVVLGK 114
NV E +V G+ +PF RG W P + YN + +GK
Sbjct: 81 NVSERLVQYVKGKTYPF--RGAFPPVWNPIAYLDYNNLWRTIDNMGK 125
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 9/107 (8%)
Query: 11 GVDIAIVKKSGKVSALEDEIQTRIALDAADGVDIA---IVKKSGKVSALEDEIQTRLKEL 67
GV + +++ +V I+ + D VD+ + ++ L E+ ++
Sbjct: 36 GVSVLVLEARDRVGGRTYTIRN----EHVDYVDVGGAYVGPTQNRILRLSKELGIETYKV 91
Query: 68 NVEESSATHVLGRLFPFDDRGLVHAYWAPNFWAFYNTADKAAVVLGK 114
NV E +V G+ +PF RG W P + YN + +GK
Sbjct: 92 NVSERLVQYVKGKTYPF--RGAFPPVWNPIAYLDYNNLWRTIDNMGK 136
>pdb|3L8U|A Chain A, Crystal Structure Of Smu.1707c, A Putative Rrna
Methyltransferase From Streptococcus Mutans Ua159
pdb|3L8U|B Chain B, Crystal Structure Of Smu.1707c, A Putative Rrna
Methyltransferase From Streptococcus Mutans Ua159
Length = 182
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 72 SSATHVLGRL-FPFDDRGLVHA---YWAPNFWAFYNTADKAAVVLGKRFHLISSNVTNTM 127
+++ H++ + FP DD+ + A YW FY++ + + + HLI+ T
Sbjct: 42 NTSLHIIRPMGFPIDDKKMKRAGLDYWDKLDVHFYDSLNDFMNICSGKLHLITKFANKTY 101
Query: 128 TRGLVENSQH 137
+ ++S+H
Sbjct: 102 SDENYDDSEH 111
>pdb|2WMK|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae
Sp3-Bs71 (Sp3gh98) In Complex With The A-Lewisy
Pentasaccharide Blood Group Antigen.
pdb|2WMK|B Chain B, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae
Sp3-Bs71 (Sp3gh98) In Complex With The A-Lewisy
Pentasaccharide Blood Group Antigen
Length = 606
Score = 27.3 bits (59), Expect = 4.0, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 18 KKSGK--VSALEDEIQTRIALDAADGVDIAI--VKKSGKVSALEDEIQTRLKELNVEESS 73
K +GK V+ D QT + + V AI V K+ K+ + ++KE+ E S
Sbjct: 366 KGNGKFFVNVNTDREQTPLYMTGRYNVIPAIPGVLKTDKLKESVSSSRIQIKEITSPEFS 425
Query: 74 ATHV----LGRLFPFDDRGLVHAYWAPNFWAFYN 103
+T L +L+P + G + A N W YN
Sbjct: 426 STQARKEYLNKLYPMNYEGDIFAQKLDNRWFVYN 459
>pdb|2WMI|B Chain B, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae
Sp3-Bs71 In Complex With The A-Trisaccharide Blood Group
Antigen
Length = 606
Score = 27.3 bits (59), Expect = 4.0, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 18 KKSGK--VSALEDEIQTRIALDAADGVDIAI--VKKSGKVSALEDEIQTRLKELNVEESS 73
K +GK V+ D QT + + V AI V K+ K+ + ++KE+ E S
Sbjct: 366 KGNGKFFVNVNTDREQTPLYMTGRYNVIPAIPGVLKTDKLKESVSSSRIQIKEITSPEFS 425
Query: 74 ATHV----LGRLFPFDDRGLVHAYWAPNFWAFYN 103
+T L +L+P + G + A N W YN
Sbjct: 426 STQARKEYLNKLYPMNYEGDIFAQKLDNRWFVYN 459
>pdb|2WMI|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae
Sp3-Bs71 In Complex With The A-Trisaccharide Blood Group
Antigen.
pdb|2WMJ|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae
Sp3-Bs71 (Sp3gh98) In Complex With The B-Trisaccharide
Blood Group Antigen.
pdb|2WMJ|B Chain B, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae
Sp3-Bs71 (Sp3gh98) In Complex With The B-Trisaccharide
Blood Group Antigen
Length = 606
Score = 27.3 bits (59), Expect = 4.0, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 18 KKSGK--VSALEDEIQTRIALDAADGVDIAI--VKKSGKVSALEDEIQTRLKELNVEESS 73
K +GK V+ D QT + + V AI V K+ K+ + ++KE+ E S
Sbjct: 366 KGNGKFFVNVNTDREQTPLYMTGRYNVIPAIPGVLKTDKLKESVSSSRIQIKEITSPEFS 425
Query: 74 ATHV----LGRLFPFDDRGLVHAYWAPNFWAFYN 103
+T L +L+P + G + A N W YN
Sbjct: 426 STQARKEYLNKLYPMNYEGDIFAQKLDNRWFVYN 459
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 9/107 (8%)
Query: 11 GVDIAIVKKSGKVSALEDEIQTRIALDAADGVDIA---IVKKSGKVSALEDEIQTRLKEL 67
GV + +++ +V I+ + D VD+ + ++ L E+ ++
Sbjct: 25 GVSVLVLEARDRVGGRTYTIRN----EHVDYVDVGGAYVGPTQNRILRLSKELGIETYKV 80
Query: 68 NVEESSATHVLGRLFPFDDRGLVHAYWAPNFWAFYNTADKAAVVLGK 114
NV E +V G+ +PF R W P + YN + +GK
Sbjct: 81 NVSERLVQYVKGKTYPF--RAAFPPVWNPIAYLDYNNLWRTIDNMGK 125
>pdb|3BRS|A Chain A, Crystal Structure Of Sugar Transporter From Clostridium
Phytofermentans
pdb|3BRS|B Chain B, Crystal Structure Of Sugar Transporter From Clostridium
Phytofermentans
Length = 289
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 16 IVKKSGKVSALEDEIQTRIALDAADGVDIAIVKKSGKVSAL 56
+V+KSGK+ + ++ A+D +G+ I + S K+ A+
Sbjct: 127 LVRKSGKIGVISFVKNSKTAMDREEGLKIGLSDDSNKIEAI 167
>pdb|1J4B|A Chain A, Recombinant Mouse-muscle Adenylosuccinate Synthetase
pdb|1IWE|A Chain A, Imp Complex Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase
pdb|1IWE|B Chain B, Imp Complex Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase
pdb|1LNY|A Chain A, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Mg
pdb|1LNY|B Chain B, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Mg
pdb|1LON|A Chain A, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With
6-Phosphoryl-Imp, Gdp And Hadacidin
pdb|1LOO|A Chain A, Crystal Structure Of The Mouse-Muscle Adenylosuccinate
Synthetase Ligated With Gtp
pdb|1MEZ|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Samp, Gdp, So4(2-), And Mg(2+)
pdb|1MF0|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Amp, Gdp, Hpo4(2-), And Mg(2+)
pdb|1MF1|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Amp
pdb|2DGN|A Chain A, Mouse Muscle Adenylosuccinate Synthetase Partially Ligated
Complex With Gtp, 2'-Deoxy-Imp
Length = 457
Score = 25.8 bits (55), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 103 NTADKAAVVLGKR--FHLISSNVTNTMTRGLVENSQHVVLPSI 143
N A VV GK FHL+ S + NT + N + LP +
Sbjct: 67 NNAGHTVVVDGKEYDFHLLPSGIINTKAVSFIGNGVVIHLPGL 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,249,815
Number of Sequences: 62578
Number of extensions: 152899
Number of successful extensions: 418
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 417
Number of HSP's gapped (non-prelim): 14
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)