Query psy1922
Match_columns 159
No_of_seqs 205 out of 345
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 19:44:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1922.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1922hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bpl_A Glucosamine--fructose-6 92.8 0.049 1.7E-06 49.2 2.6 50 29-97 28-77 (608)
2 1te5_A Conserved hypothetical 92.5 0.032 1.1E-06 45.5 0.9 48 29-96 33-82 (257)
3 1xff_A D-fructose-6-, glucosam 90.4 0.27 9.4E-06 39.1 4.2 48 30-97 29-77 (240)
4 3mdn_A Glutamine aminotransfer 80.9 0.92 3.1E-05 37.4 2.8 48 28-96 42-92 (274)
5 1ecf_A Glutamine phosphoribosy 60.7 5.3 0.00018 35.3 3.0 46 31-95 30-75 (504)
6 1ao0_A Glutamine phosphoribosy 51.9 12 0.0004 32.6 3.7 46 31-96 30-75 (459)
7 2igs_A Hypothetical protein; h 29.7 20 0.00069 29.3 1.5 26 78-106 173-198 (219)
8 3iec_E 120 kDa protein, cytoto 26.5 14 0.00048 28.2 0.0 18 18-35 25-42 (125)
9 2lqj_A Mg2+ transport protein; 18.2 30 0.001 24.3 0.3 23 71-95 64-86 (94)
10 2grg_A Hypothetical protein; Y 14.9 1.7E+02 0.0057 22.0 3.8 45 4-52 40-97 (120)
No 1
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=92.82 E-value=0.049 Score=49.18 Aligned_cols=50 Identities=20% Similarity=0.327 Sum_probs=34.7
Q ss_pred HHhhcccccCCCCccEEEEEeccchHHHHHHHHHHhhccCcchhhhhhhhcccccccccceeecccCCh
Q psy1922 29 EIQTRIALDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVLGRLFPFDDRGLVHAYWAPN 97 (159)
Q Consensus 29 ~iqAGIaiDg~~~~~i~i~K~~GKV~~L~~~i~~~~~~l~~~~~ql~Q~lsRLfp~~~rGl~Ha~WApN 97 (159)
...+|+++.++ +.++.++|..|+|+.|++.+... . +..+ .||.|+|||.+
T Consensus 28 ~D~~Gi~~~~~-~~~~~~~k~~g~~~~l~~~l~~~--------~---------~~~~-~~igH~R~at~ 77 (608)
T 2bpl_A 28 YDSAGLAVVDA-EGHMTRLRRLGKVQMLAQAAEEH--------P---------LHGG-TGIAHTRWATH 77 (608)
T ss_dssp CSEEEEEEECT-TCCEEEEEEESSHHHHHHHHHHS--------C---------CCCS-EEEEEEECCCS
T ss_pred CCcCceEEEec-CCcEEEEeCCCcHHHHHHHhhcc--------C---------CCCC-EEEEEEccCCC
Confidence 44567776522 24688999999999997655421 1 4566 89999999843
No 2
>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1
Probab=92.49 E-value=0.032 Score=45.47 Aligned_cols=48 Identities=10% Similarity=-0.025 Sum_probs=33.1
Q ss_pred HHhhcccccCCCCccEEEEEeccchHH--HHHHHHHHhhccCcchhhhhhhhcccccccccceeecccCC
Q psy1922 29 EIQTRIALDAADGVDIAIVKKSGKVSA--LEDEIQTRLKELNVEESSATHVLGRLFPFDDRGLVHAYWAP 96 (159)
Q Consensus 29 ~iqAGIaiDg~~~~~i~i~K~~GKV~~--L~~~i~~~~~~l~~~~~ql~Q~lsRLfp~~~rGl~Ha~WAp 96 (159)
+..+|+|+-.+ .++.++|..|+|.. +++.+... . ++.+ .||.|+|||.
T Consensus 33 ~DgaGIa~~~~--~~~~~~k~~g~v~~~~~~~~l~~~--------~---------l~g~-~~IgHvR~AT 82 (257)
T 1te5_A 33 RDGWGIAFYEG--RGVRLFQDPLASVDSEVARLVQRF--------P---------IKSE-TVIGHIRQAN 82 (257)
T ss_dssp BCEEEEEEEET--TEEEEEEECSBSSCCHHHHHHHHS--------C---------CEEE-EEEEEEEECC
T ss_pred CCeEEEEEEeC--CceEEEECCCccccchHHHHHhhC--------C---------cccc-EEEEEeecCC
Confidence 67888887543 35899999999975 33332210 1 4566 8999999986
No 3
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Probab=90.35 E-value=0.27 Score=39.06 Aligned_cols=48 Identities=23% Similarity=0.414 Sum_probs=32.9
Q ss_pred Hhhccc-ccCCCCccEEEEEeccchHHHHHHHHHHhhccCcchhhhhhhhcccccccccceeecccCCh
Q psy1922 30 IQTRIA-LDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVLGRLFPFDDRGLVHAYWAPN 97 (159)
Q Consensus 30 iqAGIa-iDg~~~~~i~i~K~~GKV~~L~~~i~~~~~~l~~~~~ql~Q~lsRLfp~~~rGl~Ha~WApN 97 (159)
..+|++ +.. +..+.++|..|+|+.+.+.+... . +..+ .||.|+|||.+
T Consensus 29 D~~Gi~~~~~--~~~~~~~k~~g~~~~~~~~~~~~--------~---------~~~~-~~igH~R~at~ 77 (240)
T 1xff_A 29 DSAGLAVVDA--EGHMTRLRRLGKVQMLAQAAEEH--------P---------LHGG-TGIAHTRWATH 77 (240)
T ss_dssp SEEEEEEECT--TCCEEEEEEESCHHHHHHHHHHS--------C---------CCCS-EEEEEEECCSS
T ss_pred CcCCEEEEec--CCcEEEEEcCCcHHHHHhhhhcc--------c---------CCcc-EEEEEEeccCC
Confidence 345666 542 34688999999999887654321 1 3455 89999999854
No 4
>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}
Probab=80.87 E-value=0.92 Score=37.40 Aligned_cols=48 Identities=10% Similarity=-0.069 Sum_probs=27.9
Q ss_pred HHHhhcccccCCCCccEEEEEecc---chHHHHHHHHHHhhccCcchhhhhhhhcccccccccceeecccCC
Q psy1922 28 DEIQTRIALDAADGVDIAIVKKSG---KVSALEDEIQTRLKELNVEESSATHVLGRLFPFDDRGLVHAYWAP 96 (159)
Q Consensus 28 e~iqAGIaiDg~~~~~i~i~K~~G---KV~~L~~~i~~~~~~l~~~~~ql~Q~lsRLfp~~~rGl~Ha~WAp 96 (159)
-...+|+|+-.+ ..+..++|+++ +...|++... . ...+ .||.|+|||.
T Consensus 42 ~~Dg~GIa~~~~-~~~~~~~r~~~p~~~~~~l~~l~~-~------------------~~g~-~~igHvR~AT 92 (274)
T 3mdn_A 42 NGDGFGVAWYDA-RPEPGLYRDVYPAWSDPNLRAVAH-H------------------VRSG-LFLSHVRAST 92 (274)
T ss_dssp ---CEEEEEESS-SSSCEEEEESSCGGGCHHHHHHHH-H------------------CEEE-EEEEEC----
T ss_pred CCCeeEEEEEcC-CCcEEEEecCCcccCcHHHHHHhh-c------------------CCCC-EEEEEEcccc
Confidence 456778877433 23578899999 7777766532 2 3455 7888888875
No 5
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*
Probab=60.68 E-value=5.3 Score=35.30 Aligned_cols=46 Identities=15% Similarity=0.131 Sum_probs=28.7
Q ss_pred hhcccccCCCCccEEEEEeccchHHHHHHHHHHhhccCcchhhhhhhhcccccccccceeecccC
Q psy1922 31 QTRIALDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVLGRLFPFDDRGLVHAYWA 95 (159)
Q Consensus 31 qAGIaiDg~~~~~i~i~K~~GKV~~L~~~i~~~~~~l~~~~~ql~Q~lsRLfp~~~rGl~Ha~WA 95 (159)
.+|+++.. ++..+.+.|..|+|+.+-+... +.. ++.+ .||.|+||+
T Consensus 30 ~aGi~~~~-~~~~~~~~k~~g~v~~vf~~~~------------~~~-----l~g~-~~igH~R~s 75 (504)
T 1ecf_A 30 AAGIITID-ANNCFRLRKANGLVSDVFEARH------------MQR-----LQGN-MGIGHVRYP 75 (504)
T ss_dssp EEEEEEEC-TTSCEEEEEEESCHHHHCCHHH------------HHH-----CCSS-EEEEEEECC
T ss_pred cceEEEEc-CCCcEEEEecCCchhhhcCccc------------ccc-----CCCC-EEEEEEccC
Confidence 45666643 2446888999999987543311 111 4555 788888886
No 6
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Probab=51.89 E-value=12 Score=32.58 Aligned_cols=46 Identities=17% Similarity=0.222 Sum_probs=29.2
Q ss_pred hhcccccCCCCccEEEEEeccchHHHHHHHHHHhhccCcchhhhhhhhcccccccccceeecccCC
Q psy1922 31 QTRIALDAADGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVLGRLFPFDDRGLVHAYWAP 96 (159)
Q Consensus 31 qAGIaiDg~~~~~i~i~K~~GKV~~L~~~i~~~~~~l~~~~~ql~Q~lsRLfp~~~rGl~Ha~WAp 96 (159)
.+|+++.. +..+.++|..|+|+.+.+. . .++ . ++.+ .||.|+|||.
T Consensus 30 ~~Gi~~~~--~~~~~~~k~~g~v~~~~~~---~--~l~---~---------l~g~-~~igH~R~at 75 (459)
T 1ao0_A 30 GAGIVATD--GEKLTAHKGQGLITEVFQN---G--ELS---K---------VKGK-GAIGHVRYAT 75 (459)
T ss_dssp EEEEEEEC--SSCEEEEEEESCHHHHTTS---S--CTT---T---------CCBS-EEEEEEECCC
T ss_pred cCCEEEEe--CCeEEEEecCCcHhhhcch---h--hhh---c---------cCCC-EEEEEEecCC
Confidence 35666643 3468889999988865321 1 111 1 4566 8899999984
No 7
>2igs_A Hypothetical protein; helix-bundles, alpha-beta, structural genomics, PSI-2, prote structure initiative; 2.17A {Pseudomonas aeruginosa} SCOP: d.2.1.11
Probab=29.71 E-value=20 Score=29.26 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=16.6
Q ss_pred hcccccccccceeecccCChhHHHHHHHH
Q psy1922 78 LGRLFPFDDRGLVHAYWAPNFWAFYNTAD 106 (159)
Q Consensus 78 lsRLfp~~~rGl~Ha~WApN~WAlY~~~D 106 (159)
+..|.-.. .|+ --=|||||+.||-+-
T Consensus 173 iK~L~tpG-vGl--~L~apnfs~vfN~I~ 198 (219)
T 2igs_A 173 IKALVGPG-VGL--RLDAPNFSDVFNTIK 198 (219)
T ss_dssp HHHHHGGG-TTC--BTTSTTHHHHHHHHH
T ss_pred HHHHhcCC-cce--ecCCcchHHHHHHHh
Confidence 33344333 444 456999999999764
No 8
>3iec_E 120 kDa protein, cytotoxicity-associated immunodominant antigen; protein-protein complex, kinase, virulence factor, alternati promoter usage; 2.20A {Helicobacter pylori}
Probab=26.53 E-value=14 Score=28.20 Aligned_cols=18 Identities=44% Similarity=0.684 Sum_probs=10.8
Q ss_pred eccCcccchHHHHhhccc
Q psy1922 18 KKSGKVSALEDEIQTRIA 35 (159)
Q Consensus 18 kk~GKVkaLEe~iqAGIa 35 (159)
||.|++...||-|++.+|
T Consensus 25 Kk~gq~aspeEpIyaqva 42 (125)
T 3iec_E 25 KKTGQVASPEEPIYTQVA 42 (125)
T ss_pred hccccccCcccchhHHHH
Confidence 456666666666666553
No 9
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=18.18 E-value=30 Score=24.30 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=16.4
Q ss_pred hhhhhhhhcccccccccceeecccC
Q psy1922 71 ESSATHVLGRLFPFDDRGLVHAYWA 95 (159)
Q Consensus 71 ~~ql~Q~lsRLfp~~~rGl~Ha~WA 95 (159)
...|.|+.+||---. |+.|++|-
T Consensus 64 ~~~Le~iv~rLs~ep--~V~~a~W~ 86 (94)
T 2lqj_A 64 PAKLERLVAELSLQP--GVYAVHWY 86 (94)
T ss_dssp HHHHHHHHHHHHHST--TEEEEEEE
T ss_pred HHHHHHHHHHHhCCC--CeEEEEEE
Confidence 345667777775554 99999995
No 10
>2grg_A Hypothetical protein; YNR034W-AP; helix/beta strand protein, structural genomics, PSI, protein structure initiative; NMR {Saccharomyces cerevisiae} SCOP: d.110.10.1
Probab=14.86 E-value=1.7e+02 Score=22.03 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=25.3
Q ss_pred eeeecCCCCcEEEEeccCccc-----chHHHHhhc-ccccC-------CCCccEEEEEeccc
Q psy1922 4 IALDAADGVDIAIVKKSGKVS-----ALEDEIQTR-IALDA-------ADGVDIAIVKKSGK 52 (159)
Q Consensus 4 ia~Dg~~~~~i~likk~GKVk-----aLEe~iqAG-IaiDg-------~~~~~i~i~K~~GK 52 (159)
++||..++ ||--+|==| ..||-+.-. ..+|. |.+..+.+||+.||
T Consensus 40 LtFDen~n----lIessGIgk~i~k~rVeDIv~lS~veLd~eGyaV~eD~~v~vhvyK~dGk 97 (120)
T 2grg_A 40 LTFDENYN----LLDTSGVAKVIEKSPIAEIIRKSNAELGRLGYSVYEDAQYIGHAFKKAGH 97 (120)
T ss_dssp EEECTTSC----EEEEEEGGGTSCCTTHHHHHHHHHHHCSSEEEEEEECSSCEEEEEEETTE
T ss_pred EEEcCCCC----EEeccccccccccchHHHHHHHhhhhhcccceeEEecCCEEEEEEeeCCc
Confidence 47887544 555555444 667666544 33332 22344577888776
Done!