RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1922
(159 letters)
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 32.0 bits (72), Expect = 0.021
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 40 DGVDIAIVKKSGKVSALEDEIQTRLKELNVEESSATHVLG 79
V++ V + G + ++ ++ EE S +V+G
Sbjct: 173 GSVNLYHVTEDGWIYHGNHDVGELFWKVKEEEGSFNNVIG 212
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 241
Score = 30.0 bits (67), Expect = 0.099
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 13/68 (19%)
Query: 6 LDAADGVDIAIVKKSGKVSALEDEIQTRIALDAADGVDIAIVKKSGKVSAL-EDEIQTRL 64
+ V + + +L + +QT A ++I +VK + AL +EI +
Sbjct: 184 ATVEECVKLTV-------RSLLEVVQT-----GAKNIEITVVKPDSDIVALSSEEINQYV 231
Query: 65 KELNVEES 72
++ E+
Sbjct: 232 TQIEQEKQ 239
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 28.1 bits (62), Expect = 0.39
Identities = 9/50 (18%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 23 VSALEDEIQTRIALDAADGVDIAIVKKSGKVSAL-EDEIQTRLKELNVEE 71
+ AL + +Q +++A++++ + L +EI+ + E+ E+
Sbjct: 191 IKALLEVVQ-----SGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEK 235
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 243
Score = 27.4 bits (60), Expect = 0.72
Identities = 4/29 (13%), Positives = 13/29 (44%)
Query: 39 ADGVDIAIVKKSGKVSALEDEIQTRLKEL 67
+ +++ + K + + I+ RL +
Sbjct: 211 KNDLEVGVATKDKFFTLSAENIEERLVAI 239
Score = 24.7 bits (53), Expect = 5.7
Identities = 3/27 (11%), Positives = 12/27 (44%)
Query: 9 ADGVDIAIVKKSGKVSALEDEIQTRIA 35
+ +++ + K + + I+ R+
Sbjct: 211 KNDLEVGVATKDKFFTLSAENIEERLV 237
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 233
Score = 27.0 bits (59), Expect = 0.84
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 39 ADGVDIAIVKKSGKVSALEDEIQTRLKEL 67
D +++ I ++G E++ L +
Sbjct: 204 EDNIEVGICNEAGFRRLTPTEVKDYLAAI 232
Score = 25.5 bits (55), Expect = 3.5
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 9 ADGVDIAIVKKSGKVSALEDEIQTRIA 35
D +++ I ++G E++ +A
Sbjct: 204 EDNIEVGICNEAGFRRLTPTEVKDYLA 230
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 26.9 bits (59), Expect = 1.1
Identities = 5/30 (16%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 39 ADGVDIAIVKKSGKVSAL-EDEIQTRLKEL 67
A +++A V+ ++E++ +K++
Sbjct: 205 ATNIELATVQPGQNFHMFTKEELEEVIKDI 234
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 25.3 bits (54), Expect = 2.8
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 16 IVKKSGKVSALEDEIQT--RIALDAADGVDIAIVKKS--GKVSALEDEIQTRLKELNVEE 71
+ K G+ E + R G+ +++ + ++D + +K+LN E+
Sbjct: 109 LPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIKQLNAED 168
>d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 190
Score = 25.1 bits (55), Expect = 3.9
Identities = 10/52 (19%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 33 RIALDAADGVDIAIV------KKSGKVSALEDEIQTRLKELNVEESSATHVL 78
AL+ A+G+++ +V + G+ + + E++ L++ + +H+L
Sbjct: 47 MKALEMAEGLEVVVVTYHTGFVREGENT-MPPEVEEELRKRGAKIVRQSHIL 97
>d3er7a1 d.17.4.24 (A:5-122) Uncharacterized protein Exig0174
{Exiguobacterium sibiricum 255-15 [TaxId: 262543]}
Length = 118
Score = 24.5 bits (53), Expect = 4.4
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 9/46 (19%)
Query: 22 KVSALEDEIQTRIALD---------AADGVDIAIVKKSGKVSALED 58
S D ++TR A+ DG DIA + GK+ L +
Sbjct: 68 VPSETGDTMETRWAVCGKSADGSVFTQDGTDIARLNADGKIVYLAN 113
Score = 24.1 bits (52), Expect = 7.0
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 8 AADGVDIAIVKKSGKVSALED 28
DG DIA + GK+ L +
Sbjct: 93 TQDGTDIARLNADGKIVYLAN 113
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 202
Score = 24.8 bits (53), Expect = 5.7
Identities = 7/54 (12%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 14 IAIVKKSGKVSALEDEIQTRIALDAADGVDIAIVKKSGKVSALEDEIQTRLKEL 67
+ + ++ SA++ + + DG+D+ + + +E++ L +
Sbjct: 154 VELAVRAIY-SAMKRDSAS------GDGIDVVKITEDEFYQYSPEEVEQILAKF 200
>d2oqma1 a.213.1.3 (A:1-171) Hypothetical protein Sden0562
{Shewanella denitrificans [TaxId: 192073]}
Length = 171
Score = 24.5 bits (53), Expect = 6.6
Identities = 6/50 (12%), Positives = 12/50 (24%), Gaps = 4/50 (8%)
Query: 70 EESSATHVLGRLFPFDDRGLVHAYWAPNFW----AFYNTADKAAVVLGKR 115
+ + + PN + Y V +GK+
Sbjct: 111 ATIQISQPRWQGKYLTGYEFAIEHAIPNLYFHITTAYGILRHNGVEVGKK 160
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.394
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 562,525
Number of extensions: 23690
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 16
Length of query: 159
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,336,656
Effective search space: 108269136
Effective search space used: 108269136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.0 bits)