Query psy1924
Match_columns 265
No_of_seqs 187 out of 2244
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 19:46:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1924.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1924hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00063 histone deacetylase; 100.0 1.5E-57 3.2E-62 424.2 18.3 242 3-247 64-319 (436)
2 PTZ00346 histone deacetylase; 100.0 8.6E-57 1.9E-61 416.8 18.5 243 3-248 84-338 (429)
3 KOG1342|consensus 100.0 3E-55 6.5E-60 392.6 14.8 242 3-248 67-322 (425)
4 COG0123 AcuC Deacetylases, inc 100.0 8.5E-53 1.8E-57 384.2 19.2 222 3-229 62-296 (340)
5 PF00850 Hist_deacetyl: Histon 100.0 2.2E-52 4.7E-57 379.8 14.2 226 3-230 48-298 (311)
6 KOG1343|consensus 100.0 1.9E-30 4.2E-35 256.1 11.7 206 31-238 528-751 (797)
7 KOG1344|consensus 99.9 8.7E-26 1.9E-30 191.7 4.8 221 3-231 76-307 (324)
8 KOG1342|consensus 99.9 2E-22 4.4E-27 181.5 5.6 107 159-265 66-176 (425)
9 PTZ00063 histone deacetylase; 99.8 1.4E-21 2.9E-26 183.1 8.1 108 158-265 62-175 (436)
10 PTZ00346 histone deacetylase; 99.8 2.6E-21 5.7E-26 180.2 9.1 108 158-265 82-192 (429)
11 KOG1343|consensus 99.8 2.2E-21 4.9E-26 192.1 4.2 230 2-233 92-344 (797)
12 COG0123 AcuC Deacetylases, inc 99.8 4.6E-20 1E-24 168.9 8.1 103 158-265 60-164 (340)
13 PF00850 Hist_deacetyl: Histon 99.8 5.8E-20 1.3E-24 167.2 5.5 107 158-265 46-163 (311)
14 KOG1344|consensus 98.9 4.8E-10 1E-14 96.1 2.7 77 187-265 104-182 (324)
15 KOG0121|consensus 63.2 6.4 0.00014 31.4 2.4 44 73-116 73-123 (153)
16 TIGR01969 minD_arch cell divis 58.9 11 0.00025 32.3 3.5 17 95-111 27-43 (251)
17 PRK13236 nitrogenase reductase 56.3 13 0.00029 33.4 3.6 22 96-118 33-54 (296)
18 cd02036 MinD Bacterial cell di 49.5 16 0.00036 29.3 2.9 22 93-114 24-45 (179)
19 cd03111 CpaE_like This protein 48.3 23 0.0005 26.5 3.3 15 97-111 29-43 (106)
20 TIGR03018 pepcterm_TyrKin exop 47.4 21 0.00045 30.1 3.3 17 95-111 63-79 (207)
21 CHL00175 minD septum-site dete 46.4 23 0.00051 31.2 3.5 20 95-114 42-61 (281)
22 cd03110 Fer4_NifH_child This p 45.3 17 0.00036 29.7 2.3 15 98-112 25-39 (179)
23 TIGR01287 nifH nitrogenase iro 44.4 23 0.0005 31.1 3.2 20 95-115 26-45 (275)
24 PRK10818 cell division inhibit 44.2 27 0.00059 30.5 3.6 18 95-112 29-46 (270)
25 TIGR01281 DPOR_bchL light-inde 44.0 21 0.00046 31.2 2.9 21 95-116 26-46 (268)
26 PF09140 MipZ: ATPase MipZ; I 42.5 19 0.00041 32.1 2.3 18 93-110 25-42 (261)
27 PRK13230 nitrogenase reductase 41.9 30 0.00065 30.6 3.5 21 95-116 27-47 (279)
28 PRK13232 nifH nitrogenase redu 41.3 30 0.00065 30.5 3.4 17 95-111 27-43 (273)
29 PRK13185 chlL protochlorophyll 41.1 23 0.00051 31.0 2.7 20 95-115 28-47 (270)
30 PRK13234 nifH nitrogenase redu 40.8 26 0.00056 31.6 2.9 24 93-117 28-51 (295)
31 TIGR01968 minD_bact septum sit 39.7 35 0.00075 29.3 3.5 18 95-112 28-45 (261)
32 cd02040 NifH NifH gene encodes 39.0 35 0.00075 29.7 3.5 20 95-115 27-46 (270)
33 PRK13233 nifH nitrogenase redu 37.9 33 0.00071 30.2 3.1 16 96-111 30-45 (275)
34 cd02032 Bchl_like This family 35.2 38 0.00082 29.6 3.1 19 95-114 26-44 (267)
35 cd02117 NifH_like This family 34.5 40 0.00087 28.4 3.0 22 95-117 26-47 (212)
36 PF02701 zf-Dof: Dof domain, z 34.3 14 0.0003 25.5 0.1 9 78-86 16-24 (63)
37 TIGR03371 cellulose_yhjQ cellu 32.6 38 0.00083 28.9 2.6 16 95-111 28-43 (246)
38 TIGR02016 BchX chlorophyllide 30.2 58 0.0013 29.4 3.5 16 95-110 26-41 (296)
39 COG3640 CooC CO dehydrogenase 29.9 61 0.0013 28.7 3.3 41 77-117 111-156 (255)
40 TIGR03018 pepcterm_TyrKin exop 28.1 70 0.0015 26.9 3.4 24 242-265 53-76 (207)
41 PHA02518 ParA-like protein; Pr 27.3 57 0.0012 27.0 2.8 21 93-114 25-45 (211)
42 PRK10037 cell division protein 26.5 52 0.0011 28.6 2.4 19 93-112 26-44 (250)
43 PRK13235 nifH nitrogenase redu 25.9 80 0.0017 27.7 3.6 21 95-116 27-47 (274)
44 TIGR03453 partition_RepA plasm 25.5 61 0.0013 30.3 2.8 19 95-114 131-149 (387)
45 PRK13869 plasmid-partitioning 24.8 60 0.0013 30.7 2.6 21 93-114 146-166 (405)
46 PF01656 CbiA: CobQ/CobB/MinD/ 23.6 90 0.002 25.2 3.2 18 92-109 22-39 (195)
47 COG1192 Soj ATPases involved i 23.5 82 0.0018 27.2 3.1 22 96-118 31-52 (259)
48 cd02037 MRP-like MRP (Multiple 23.0 95 0.0021 24.9 3.2 14 95-108 26-39 (169)
49 TIGR03815 CpaE_hom_Actino heli 21.9 1E+02 0.0022 27.8 3.5 16 95-110 120-135 (322)
50 TIGR01007 eps_fam capsular exo 21.9 99 0.0021 25.7 3.2 16 95-110 44-59 (204)
51 cd02033 BchX Chlorophyllide re 21.7 97 0.0021 28.6 3.3 24 94-118 56-79 (329)
52 CHL00072 chlL photochlorophyll 21.5 72 0.0016 28.6 2.4 19 95-114 26-44 (290)
No 1
>PTZ00063 histone deacetylase; Provisional
Probab=100.00 E-value=1.5e-57 Score=424.19 Aligned_cols=242 Identities=45% Similarity=0.750 Sum_probs=211.8
Q ss_pred CHHHHHHHHhhCCCCCC----CCCCcccC--CCCCCChhHHHHHHHHhhHHHHHHHHHhccCCceEEecCCCCCCcccCC
Q psy1924 3 TPDFFLQILIVNPFFLY----PSFPVNVG--EDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSE 76 (265)
Q Consensus 3 ~~~yv~~~~~~~p~~~~----~~~~~~~~--~d~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~a~~~~~g~HHa~~~~ 76 (265)
+++||+.|+.++|++.. ++.+|+++ .|||+++++++++++++||+|.||+.+++++.++|+|||||+|||++++
T Consensus 64 s~~YI~~L~~~~~~~~~~~~~~~~~f~lg~~~D~pv~~gl~~~a~~aaGgsl~Aa~~l~~g~~~iAin~~GG~HHA~~~~ 143 (436)
T PTZ00063 64 DEEYVDFLSSISPENYRDFTYQLKRFNVGEATDCPVFDGLFEFQQSCAGASIDGAYKLNNHQADICVNWSGGLHHAKRSE 143 (436)
T ss_pred CHHHHHHHHHhChhhcccchhhhhhcccCCCCCCCcccHHHHHHHHHHhHHHHHHHHHHcCCCCEEeeCCCCCCCCccCC
Confidence 79999999998887433 35567777 5999999999999999999999999999999999999999999999999
Q ss_pred CCcccccchHHHHHHHHHHhCCcEEEEeccccCCCcceecceecCceEEEEccCcCCCCCCCCCCCccccCc----eeeE
Q psy1924 77 ASGFCYVNDIVLGILELLKYHQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDMERVE----KFNV 152 (265)
Q Consensus 77 ~~Gfc~~n~~a~a~~~~~~~~~rv~iiD~D~h~g~G~~~~f~~d~~vl~~S~h~~~~~~P~~g~~~~~g~g~----~~ni 152 (265)
++|||+|||+||||++|++.++||+|||||||||||||++|+++++|+++|+|++++|||+||+..++|.+. .+|+
T Consensus 144 A~GFC~~NdiaiAi~~L~~~~~RVliID~DvHHGdGtqe~F~~~~~VltvS~H~~~~ffPgtG~~~e~G~g~G~g~~vNv 223 (436)
T PTZ00063 144 ASGFCYINDIVLGILELLKYHARVMYIDIDVHHGDGVEEAFYVTHRVMTVSFHKFGDFFPGTGDVTDIGVAQGKYYSVNV 223 (436)
T ss_pred CCceeeecHHHHHHHHHHHhCCeEEEEeCCCCCCcchHHHhccCCCeEEEEeccCCCcCCCCCCccccCCCCCCceEEEe
Confidence 999999999999999999999999999999999999999999999999999999977999999999887543 4799
Q ss_pred EeecccCCHHHHHHHHh-hCC--CccCCC-CCeeecCCCCccCcccccccccHhHHHHHHHHHhhhccceeeccCCCcCc
Q psy1924 153 IESRVMFTPDFFLQILI-VNP--FFLYPS-FPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHH 228 (265)
Q Consensus 153 ~~~~~~~~~d~~~~l~~-v~p--~~~~P~-i~v~aG~D~~~~d~l~~~a~lsaGg~l~a~~~l~~~~~~~a~~~~GGyhH 228 (265)
|++.+..+.+|...+.. +.| ..|+|+ +++|+|+|++..||++.+ ++|..|+....+.+.+...+++++++|||+.
T Consensus 224 PL~~G~~D~~Y~~~f~~ii~~~i~~f~Pd~IvvqaG~D~~~~DpLg~l-~Lt~~g~~~~~~~~~~~~~pil~l~gGGY~~ 302 (436)
T PTZ00063 224 PLNDGIDDDSFVDLFKPVISKCVEVYRPGAIVLQCGADSLTGDRLGRF-NLTIKGHAACVEFVRSLNIPLLVLGGGGYTI 302 (436)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccccCCCCCCCc-ccCHHHHHHHHHHHHhcCCCEEEEeCccCCc
Confidence 99987766666554432 223 347898 678999999999999997 7999999888888877667888899999997
Q ss_pred ccCCCCceechhhHHHHHH
Q psy1924 229 AKKSEASGFCYVNDIVLGI 247 (265)
Q Consensus 229 A~~~~a~gfC~~n~~ala~ 247 (265)
... +.+||+.+.++++.
T Consensus 303 ~~l--ar~w~~~t~~~~~~ 319 (436)
T PTZ00063 303 RNV--ARCWAYETGVILNK 319 (436)
T ss_pred hHH--HHHHHHHHHHHhCC
Confidence 544 56999999999875
No 2
>PTZ00346 histone deacetylase; Provisional
Probab=100.00 E-value=8.6e-57 Score=416.77 Aligned_cols=243 Identities=37% Similarity=0.573 Sum_probs=209.1
Q ss_pred CHHHHHHHHhhCCCCC---CCCCCcccCCCCCCChhHHHHHHHHhhHHHHHHHHHhccCCceEEecCCCCCCcccCCCCc
Q psy1924 3 TPDFFLQILIVNPFFL---YPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASG 79 (265)
Q Consensus 3 ~~~yv~~~~~~~p~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~a~~~~~g~HHa~~~~~~G 79 (265)
+++||+.|+...+... .+.+.+.++.|||+++++++++++++|++|.|++.+++|+.++|++||||+|||++++++|
T Consensus 84 s~~YI~~l~~~~~~~~~~~~~~~~~~~d~Dtpv~~~~~~~a~laaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~G 163 (429)
T PTZ00346 84 TDTYLANLGLHSCRSWLWNAETSKVFFSGDCPPVEGLMEHSIATASGTLMGAVLLNSGQVDVAVHWGGGMHHSKCGECSG 163 (429)
T ss_pred CHHHHHHHHHhcccccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEeCCCCcCcCCCCCCCc
Confidence 7899999986433211 1234566888999999999999999999999999999999889999999999999999999
Q ss_pred ccccchHHHHHHHHHHhCCcEEEEeccccCCCcceecceecCceEEEEccCcCC-CCCCCCCCCccccCc----eeeEEe
Q psy1924 80 FCYVNDIVLGILELLKYHQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGE-YFPGTGDLRDMERVE----KFNVIE 154 (265)
Q Consensus 80 fc~~n~~a~a~~~~~~~~~rv~iiD~D~h~g~G~~~~f~~d~~vl~~S~h~~~~-~~P~~g~~~~~g~g~----~~ni~~ 154 (265)
||+|||+||||++|+++.+||+|||||||||||||++|++||+|+++|+|+++. |||++|+..++|.+. .+|||+
T Consensus 164 FC~fNdvAIAa~~ll~~~~RVliID~DVHHGnGTqeiF~~dp~Vl~vSiHq~~~~fyPgtG~~~e~G~g~G~g~~vNVPL 243 (429)
T PTZ00346 164 FCYVNDIVLGILELLKCHDRVLYVDIDMHHGDGVDEAFCTSDRVFTLSLHKFGESFFPGTGHPRDVGYGRGRYYSMNLAV 243 (429)
T ss_pred chHHhHHHHHHHHHHHcCCeEEEEeCCCCCCchHHHHHcCCCCeEEEEecCCCCCCCCCCCCccccCCCCCceeEEeeeC
Confidence 999999999999999999999999999999999999999999999999999874 999999999887654 479998
Q ss_pred ecccCCHHHHHHHHh-hCC--CccCCC-CCeeecCCCCccCcccccccccHhHHHHHHHHHhhhccceeeccCCCcCccc
Q psy1924 155 SRVMFTPDFFLQILI-VNP--FFLYPS-FPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAK 230 (265)
Q Consensus 155 ~~~~~~~d~~~~l~~-v~p--~~~~P~-i~v~aG~D~~~~d~l~~~a~lsaGg~l~a~~~l~~~~~~~a~~~~GGyhHA~ 230 (265)
+....+.+|...+.. +.| ..|+|+ +++|+|+|++..|||..+ +++..++...++.+++...+++++++|||+...
T Consensus 244 ~~G~~D~~Yl~~f~~ii~p~l~~F~PdlIvvsaG~Da~~~DpLg~l-~LT~~g~~~~~~~l~~~~~plv~vleGGY~~~~ 322 (429)
T PTZ00346 244 WDGITDFYYLGLFEHALHSIVRRYSPDAIVLQCGADSLAGDRLGLL-NLSSFGHGQCVQAVRDLGIPMLALGGGGYTIRN 322 (429)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHhcCCCEEEEECCccCCCCCCCCCc-eeCHHHHHHHHHHHHhcCCCEEEEeCCcCCccH
Confidence 887666677655542 223 347898 678999999999999997 799999999999888777788899999999755
Q ss_pred CCCCceechhhHHHHHHH
Q psy1924 231 KSEASGFCYVNDIVLGIL 248 (265)
Q Consensus 231 ~~~a~gfC~~n~~ala~~ 248 (265)
. +.+|++...+.++..
T Consensus 323 l--ar~w~~~t~~l~g~~ 338 (429)
T PTZ00346 323 V--AKLWAYETSILTGHP 338 (429)
T ss_pred H--HHHHHHHHHHHcCCC
Confidence 4 559999998877653
No 3
>KOG1342|consensus
Probab=100.00 E-value=3e-55 Score=392.57 Aligned_cols=242 Identities=50% Similarity=0.792 Sum_probs=213.5
Q ss_pred CHHHHHHHHhhCCCCC----CCCCCcccCCCCCCChhHHHHHHHHhhHHHHHHHHHhccCCceEEecCCCCCCcccCCCC
Q psy1924 3 TPDFFLQILIVNPFFL----YPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEAS 78 (265)
Q Consensus 3 ~~~yv~~~~~~~p~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~a~~~~~g~HHa~~~~~~ 78 (265)
|+|||..|..++|++. .++.+|+++.|||+++++++++++++||+|.||..+.+++..+||||+||.|||+++.|+
T Consensus 67 t~eYi~fL~~V~p~n~~~~~~~~~~fNvg~DCPvF~gL~~fC~~~~GgSl~aa~kLn~~~~dIaINW~GGlHHAKK~eAS 146 (425)
T KOG1342|consen 67 TDEYINFLQSVTPENMETFNKELKQFNVGEDCPVFDGLYDYCQLYTGGSLNAAQKLNRGECDIAINWAGGLHHAKKSEAS 146 (425)
T ss_pred hHHHHHHHhhCCcccccccchHHHhcCCCCCCccccCHHHHHHHhcccchHHHHHhCCCCceEEEecCcccccccccccC
Confidence 7899999999999965 448899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHhCCcEEEEeccccCCCcceecceecCceEEEEccCcC-CCCCCCCCCCccccCce----eeEE
Q psy1924 79 GFCYVNDIVLGILELLKYHQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYG-EYFPGTGDLRDMERVEK----FNVI 153 (265)
Q Consensus 79 Gfc~~n~~a~a~~~~~~~~~rv~iiD~D~h~g~G~~~~f~~d~~vl~~S~h~~~-~~~P~~g~~~~~g~g~~----~ni~ 153 (265)
||||+|||+++|..|++.++||++||+|+|||||+|++|+..++|+|+|+|.++ .|||+||++.++|.+++ +|+|
T Consensus 147 GFCYvNDIVL~ILeLlK~h~RVLYIDIDvHHGDGVEeAFy~TDRVmTvSfHKyg~~fFPGTG~l~d~G~~kGkyyavNVP 226 (425)
T KOG1342|consen 147 GFCYVNDIVLGILELLKYHKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGPGFFPGTGDLSDIGAGKGKYYAVNVP 226 (425)
T ss_pred cceeehHHHHHHHHHHHhCCceEEEEecccCCccHHHHHhccceeEEEEEEeccCCCCCCCCcceeccCCCCceEEEccc
Confidence 999999999999999999999999999999999999999999999999999998 49999999999997764 6888
Q ss_pred eecccCCHHHHHHHHh--hCC--CccCCC-CCeeecCCCCccCcccccccccHhHHHHHHHHHhhhccceeeccCCCcCc
Q psy1924 154 ESRVMFTPDFFLQILI--VNP--FFLYPS-FPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHH 228 (265)
Q Consensus 154 ~~~~~~~~d~~~~l~~--v~p--~~~~P~-i~v~aG~D~~~~d~l~~~a~lsaGg~l~a~~~l~~~~~~~a~~~~GGyhH 228 (265)
+..+. +++.+..+.. +.+ ..|+|+ ++.|+|.|+..+|+|+.+ +||..|--..++-+++..-.+.+.-||||..
T Consensus 227 L~dGi-dD~sy~~if~pIi~~v~e~f~P~AiVLQCGaDSL~gDRlgcF-nLsi~Gh~~Cv~fvksfn~pllvlGGGGYT~ 304 (425)
T KOG1342|consen 227 LKDGI-DDESYESIFKPIISKVMERFQPEAIVLQCGADSLAGDRLGCF-NLSIKGHAECVKFVKSFNLPLLVLGGGGYTL 304 (425)
T ss_pred hhccC-CcHHHHHHHHHHHHHHHHHhCCceEEEEcCCccccCCcccee-eecchhHHHHHHHHHHcCCcEEEecCCccch
Confidence 88754 4554444432 222 347887 778999999999999998 7999999888888887766666677899886
Q ss_pred ccCCCCceechhhHHHHHHH
Q psy1924 229 AKKSEASGFCYVNDIVLGIL 248 (265)
Q Consensus 229 A~~~~a~gfC~~n~~ala~~ 248 (265)
..- |.+|||-+.+++...
T Consensus 305 rNV--ARcWtYeT~v~~~~~ 322 (425)
T KOG1342|consen 305 RNV--ARCWTYETGVLLDQE 322 (425)
T ss_pred hhh--HHHHHHHhhhhcCcc
Confidence 555 559999999998754
No 4
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8.5e-53 Score=384.19 Aligned_cols=222 Identities=29% Similarity=0.406 Sum_probs=192.8
Q ss_pred CHHHHHHHHhhCCCCCCCCCCcccCCCCCCChhHHHHHHHHhhHHHHHHHHHhccCCceEEecCCCCCCcccCCCCcccc
Q psy1924 3 TPDFFLQILIVNPFFLYPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCY 82 (265)
Q Consensus 3 ~~~yv~~~~~~~p~~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~a~~~~~g~HHa~~~~~~Gfc~ 82 (265)
+++||+.+....+. .+.+.++.|||+++++++++++++|++++|++.+++|+...++++.||+|||.+++++|||+
T Consensus 62 ~~~yv~~l~~~~~~----~~~~~~d~d~~~s~~~~~~a~~a~G~al~A~~~v~~g~~~~~~~~rppgHHA~~~~a~GFC~ 137 (340)
T COG0123 62 SPDYVEFLESLSEE----EGYGNLDGDTPVSPGTYEAARLAAGGALTAVDAVLEGEDNAFALVRPPGHHAGRDRASGFCL 137 (340)
T ss_pred CHHHHHHHHHhccc----cccccccCCCccChHHHHHHHHHhhHHHHHHHHHHcCccceEEECCCCcccccCCCCceeee
Confidence 78999999998877 22789999999999999999999999999999999997555666555559999999999999
Q ss_pred cchHHHHHHHHHHh-CCcEEEEeccccCCCcceecceecCceEEEEccCcC-CCCCCCCCCCccccC---ceeeEEeecc
Q psy1924 83 VNDIVLGILELLKY-HQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYG-EYFPGTGDLRDMERV---EKFNVIESRV 157 (265)
Q Consensus 83 ~n~~a~a~~~~~~~-~~rv~iiD~D~h~g~G~~~~f~~d~~vl~~S~h~~~-~~~P~~g~~~~~g~g---~~~ni~~~~~ 157 (265)
|||+||||++++++ .+||+|||||+|||||||++||+|++|+++|+|+++ .+||++|..+++|.+ ..+|+|++..
T Consensus 138 fNn~Aiaa~~l~~~~~~RVaIiD~DvHHGnGTqeify~~~~V~~~S~H~~~~~~yPgtg~~~e~g~g~~g~~vNiPLp~g 217 (340)
T COG0123 138 FNNVAIAAKYLLKKGVKRVAIIDFDVHHGNGTQEIFYDDDDVLTVSLHQDGRPFYPGTGGADEIGEGKEGNNVNIPLPPG 217 (340)
T ss_pred ecHHHHHHHHHHHcCCCcEEEEEecCCCChhhHHHHccCCCeEEEeccCCCCCCCCcCCCccccccCcccceEeeecCCC
Confidence 99999999999997 699999999999999999999999999999999986 599999998888876 4689999877
Q ss_pred cCCHHHHHHHHh-hCC--CccCCC-CCeeecCCCCccCcccccccccHhHHHHHHHHHhhhcc----ceeeccCCCcCcc
Q psy1924 158 MFTPDFFLQILI-VNP--FFLYPS-FPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQAS----EICINWGGGLHHA 229 (265)
Q Consensus 158 ~~~~d~~~~l~~-v~p--~~~~P~-i~v~aG~D~~~~d~l~~~a~lsaGg~l~a~~~l~~~~~----~~a~~~~GGyhHA 229 (265)
..+.+|...+.. +.| ..|+|+ +++|+|+|++..||+..+ +++..++..+++.+++.+. +++.+++|||+..
T Consensus 218 ~~d~~y~~a~~~~v~~~~~~f~PdlvivsaG~D~h~~Dpl~~~-~Lt~~~~~~~~~~v~~~a~~~~~~~~~vleGGY~~~ 296 (340)
T COG0123 218 TGDDSYLEALEEIVLPLLEEFKPDLVIVSAGFDAHRGDPLGRL-NLTEEGYAKIGRAVRKLAEGYGGPVVAVLEGGYNLD 296 (340)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCEEEEecCcccCCCCcccee-ecCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCChH
Confidence 666666554443 333 348898 678999999999999997 7999999999988876654 6889999999964
No 5
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=100.00 E-value=2.2e-52 Score=379.78 Aligned_cols=226 Identities=26% Similarity=0.395 Sum_probs=170.2
Q ss_pred CHHHHHHHHhhCCCCCCCCCCc--c----c-CCCCCCChhHHHHHHHHhhHHHHHHHHHhcc--CCceEEecCCCCCCcc
Q psy1924 3 TPDFFLQILIVNPFFLYPSFPV--N----V-GEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQ--ASEICINWGGGLHHAK 73 (265)
Q Consensus 3 ~~~yv~~~~~~~p~~~~~~~~~--~----~-~~d~~~~~~~~~~~~~~~g~~~~a~~~~~~~--~~~~a~~~~~g~HHa~ 73 (265)
|++||+.|....+......... . + +.|||+++++++++++++|+++.|++.++++ +..+++++||| |||.
T Consensus 48 ~~~Yv~~l~~~~~~~~~~~~~~~~~~~~~~~~~dt~~~~~~~~~a~~a~g~~l~a~~~v~~g~~~~~~a~~rppg-HHA~ 126 (311)
T PF00850_consen 48 DPEYVDFLESASKEAKEEEEAGSPEFPNILDDGDTPISPGSWEAARLAAGGTLEAADAVLSGEIKNAFALVRPPG-HHAE 126 (311)
T ss_dssp -HHHHHHHHHHHHHTSGCTHHHHHHHCCBTSSSSSEBCTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEEEESS---TT-B
T ss_pred CHHHHHHHHHhcccccccccccccccccccCCCCcceehHHHHHHHHHHHHHHHHHHhhhcccccceeeecCccc-cccC
Confidence 7899999976543311111000 0 1 7899999999999999999999999999998 56678887877 9999
Q ss_pred cCCCCcccccchHHHHHHHHHHh--CCcEEEEeccccCCCcceecceecCceEEEEccCcC-CCCC-CCCCCCcccc---
Q psy1924 74 KSEASGFCYVNDIVLGILELLKY--HQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYG-EYFP-GTGDLRDMER--- 146 (265)
Q Consensus 74 ~~~~~Gfc~~n~~a~a~~~~~~~--~~rv~iiD~D~h~g~G~~~~f~~d~~vl~~S~h~~~-~~~P-~~g~~~~~g~--- 146 (265)
+++++|||+|||+||||++++++ .+||+|||||+|||||||++|++||+|+++|+|+++ .+|| ++|..+++|.
T Consensus 127 ~~~a~GFC~~Nnvaiaa~~l~~~~~~~rV~iiD~DvHhGnGtq~if~~d~~V~~~SiH~~~~~~yP~~tG~~~e~G~~~g 206 (311)
T PF00850_consen 127 RDRAMGFCYFNNVAIAAKYLRKKYGLKRVAIIDFDVHHGNGTQEIFYDDPRVLYISIHQYPGNFYPFGTGFPDEIGEGKG 206 (311)
T ss_dssp TTBBBTTBSS-HHHHHHHHHHHTTTTSSEEEEE-SSS--HHHHHHTTT-SSEEEEEEEE-CTTSTTTSS--TT--ESGGG
T ss_pred cCcCcceeeeccHHHHHHHHhhccccceEEEEEeCCCCcccchhheeCCCCEEecCccccccccCCCcCCCccccCCCcc
Confidence 99999999999999999999995 389999999999999999999999999999999976 4999 9999998864
Q ss_pred -CceeeEEeecccCCHHHHHHHHh-hCC--CccCCC-CCeeecCCCCccCcccccccccHhHHHHHHHHHhhhcc----c
Q psy1924 147 -VEKFNVIESRVMFTPDFFLQILI-VNP--FFLYPS-FPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQAS----E 217 (265)
Q Consensus 147 -g~~~ni~~~~~~~~~d~~~~l~~-v~p--~~~~P~-i~v~aG~D~~~~d~l~~~a~lsaGg~l~a~~~l~~~~~----~ 217 (265)
+..+|+|++....+.+|+..+.. +.| ..|+|+ +++++|+|++..||+..+ +++..++...++.+.+.+. +
T Consensus 207 ~g~~~NipL~~g~~d~~y~~~~~~~l~~~~~~f~P~~ivvsaG~D~~~~Dplg~~-~lt~~~~~~~~~~~~~~a~~~~~~ 285 (311)
T PF00850_consen 207 KGYNLNIPLPPGTGDDEYLEAFEEILLPALEEFRPDLIVVSAGFDAHAGDPLGGL-NLTPEGYRELTRRLKSLAKRHCIP 285 (311)
T ss_dssp TTSEEEEEE-TTEBHHHHHHHHHHHHHHHHHHHT-SEEEEEE-STTBTTSTT-SE-BB-HHHHHHHHHHHHTTHSHHSGC
T ss_pred cceeEecccccccchHHHHHHHhhccccchhcccCcEEEEccCcccchhccccCc-CCCHHHHHHHHHHHHHHHHhcCCc
Confidence 44689999987667777665542 223 247898 678999999999999997 7999999999999887665 7
Q ss_pred eeeccCCCcCccc
Q psy1924 218 ICINWGGGLHHAK 230 (265)
Q Consensus 218 ~a~~~~GGyhHA~ 230 (265)
++.+++|||+...
T Consensus 286 ~v~vleGGY~~~~ 298 (311)
T PF00850_consen 286 VVSVLEGGYNPES 298 (311)
T ss_dssp EEEEE-S-SSHHH
T ss_pred EEEEECCCCChhH
Confidence 8889999999743
No 6
>KOG1343|consensus
Probab=99.97 E-value=1.9e-30 Score=256.13 Aligned_cols=206 Identities=26% Similarity=0.399 Sum_probs=160.4
Q ss_pred CCChhHHHHHHHHhhHHHHHHHHHh--cc--CCceEEecCCCCCCcccCCCCcccccchHHHHHHHHHHhC--CcEEEEe
Q psy1924 31 PVFDGLYEFCQLSAGGSVAAAVKLN--KQ--ASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYH--QRVLYID 104 (265)
Q Consensus 31 ~~~~~~~~~~~~~~g~~~~a~~~~~--~~--~~~~a~~~~~g~HHa~~~~~~Gfc~~n~~a~a~~~~~~~~--~rv~iiD 104 (265)
.+.++++.....++|+...++..+. .. ..++|+.|||| |||.+..++|||+|||+|+|+++++... .||+|+|
T Consensus 528 ~~~~dt~~~~~~ssga~~~av~~v~~~~~~~~~g~avvRppG-Hha~~~~a~gfc~fn~vaiaak~l~~~~~~~rilivd 606 (797)
T KOG1343|consen 528 GVDSDTWWNELHSSGAARLAVGCVIELAFKVASGFAVVRPPG-HHAEASTAMGFCFFNSVAIAAKLLQQRSKASRILIVD 606 (797)
T ss_pred eecccHHHHHHHHHHHHHHhcchhhhhhhhhhcceeEecCCc-cccccCCcceeeeecchhhhhHHhhhhhhhcceEEEe
Confidence 3445555555555555555554441 11 22589999999 9999999999999999999999999864 8999999
Q ss_pred ccccCCCcceecceecCceEEEEccCcC--CCCCCCCCCCccccCc----eeeEEeecccCC-HHHHHHH-HhhCCCc--
Q psy1924 105 VDVHHGDGVEEAFYTTDRVMTVSFHKYG--EYFPGTGDLRDMERVE----KFNVIESRVMFT-PDFFLQI-LIVNPFF-- 174 (265)
Q Consensus 105 ~D~h~g~G~~~~f~~d~~vl~~S~h~~~--~~~P~~g~~~~~g~g~----~~ni~~~~~~~~-~d~~~~l-~~v~p~~-- 174 (265)
||||||||||.+|+.|++|+++|+|.+. +|||++|..+++|.+. ++|++++.+... .+|.... .++.|..
T Consensus 607 wDvhhgngtq~~f~~~~~vlyislhr~~~G~~fp~~g~~~e~g~~~g~g~~vNv~~~~~~~~D~ey~~a~~~vv~Pia~~ 686 (797)
T KOG1343|consen 607 WDVHHGNGTQQAFYSDPSVLYISLHRHDDGNFFPGSGAPDEVGKGEGVGFNVNVAWTGGLDPDAEYLAAFRTVVMPIAYE 686 (797)
T ss_pred ecccCCcceeeeeccCccccccccchhccCCcCCCCCCchhcccccccceeecccccCCCCCCHHHHHHHHHhhHHHHHH
Confidence 9999999999999999999999999976 4999998888877544 467777776544 5665433 3345543
Q ss_pred cCCC-CCeeecCCCCccCcccccccccHhHHHHHHHHHhhhc-cceeeccCCCcCcccCCCCceec
Q psy1924 175 LYPS-FPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQA-SEICINWGGGLHHAKKSEASGFC 238 (265)
Q Consensus 175 ~~P~-i~v~aG~D~~~~d~l~~~a~lsaGg~l~a~~~l~~~~-~~~a~~~~GGyhHA~~~~a~gfC 238 (265)
|.|+ +++++|+|+..+||++.. .++..++-.++..+...+ .++.+.++|||+-.....++.-|
T Consensus 687 F~pd~VlvSagfDaa~~dplg~~-~vt~~~~~~lt~~l~~lagGRvv~~LEggy~lt~is~s~~~~ 751 (797)
T KOG1343|consen 687 FNPDLVLVSAGFDAAEGDPLGGY-KVTAECFGYLTQQLMGLAGGRVVLALEGGYDLTAISDSAEAC 751 (797)
T ss_pred hCCCeEEEeccccccccCccccc-cccHhHHHHHHHHHHHhcCCcEEEEecCCcchhhhhHHHHHH
Confidence 5687 669999999999999886 889999999988887665 67788899999976665544444
No 7
>KOG1344|consensus
Probab=99.92 E-value=8.7e-26 Score=191.70 Aligned_cols=221 Identities=22% Similarity=0.272 Sum_probs=162.1
Q ss_pred CHHHHHHHHhhCCC-CCCCCCCcccCCCCCCChhHHHHHHHHhhHHHHHHHHHhccCCceEEecCCCCCCcccCCCCccc
Q psy1924 3 TPDFFLQILIVNPF-FLYPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFC 81 (265)
Q Consensus 3 ~~~yv~~~~~~~p~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~a~~~~~g~HHa~~~~~~Gfc 81 (265)
|.+|+..++-.-.. --.+.-..+.-+.|++-..+..--++.+||++.|++...+ .+||+|..||+|||+.+++.|||
T Consensus 76 tr~YLkslr~s~~vA~I~EiP~v~flPn~~iqrk~LrPlR~QagGtilA~kLAle--~GWAINvGGGFHHcss~rGGGFC 153 (324)
T KOG1344|consen 76 TRKYLKSLRWSIKVAQITEIPFVGFLPNCIIQRKLLRPLRLQAGGTILAAKLALE--RGWAINVGGGFHHCSSSRGGGFC 153 (324)
T ss_pred hHHHHHHhhccceeeEEEeccccccCchhhhhhhhccceeeccCceeehhhhhhh--cCeEEeecCccceeccCCCCcee
Confidence 56788887542211 0011223344566777777777778889999999987755 56999999999999999999999
Q ss_pred ccchHHHHHHHHHHh--CCcEEEEeccccCCCcceecceecCceEEEEccCcCCCCCCCCCCCccccCceeeEEeecccC
Q psy1924 82 YVNDIVLGILELLKY--HQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDMERVEKFNVIESRVMF 159 (265)
Q Consensus 82 ~~n~~a~a~~~~~~~--~~rv~iiD~D~h~g~G~~~~f~~d~~vl~~S~h~~~~~~P~~g~~~~~g~g~~~ni~~~~~~~ 159 (265)
.+.|+.+||..+.++ ..|++|||+|+|||||.+.-|.++ .|..+.+...- .||......+ .+ ...+.+....-
T Consensus 154 ~yADItl~I~~lFer~~isr~mivDLDAHQGNghErdf~~~-~vyi~d~ynr~-iyp~D~~Ak~-~I--r~kVEl~~gTe 228 (324)
T KOG1344|consen 154 AYADITLAIFFLFERKAISRAMIVDLDAHQGNGHERDFEDD-AVYIFDMYNRF-IYPRDHVAKE-SI--RCKVELRNGTE 228 (324)
T ss_pred ehhhHHHHHHHHHhhhhhhheEEEecccccCCccccccccc-eeehhhhhhhh-ccchhHHHHH-Hh--hheeeeecCCC
Confidence 999999999999887 399999999999999999999977 77776665432 7776543221 11 12333444456
Q ss_pred CHHHHHHHHh---hCCCccCCC-CCeeecCCCCccCcccccccccHhHHHHHHHHHh----hhccceeeccCCCcCcccC
Q psy1924 160 TPDFFLQILI---VNPFFLYPS-FPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLN----KQASEICINWGGGLHHAKK 231 (265)
Q Consensus 160 ~~d~~~~l~~---v~p~~~~P~-i~v~aG~D~~~~d~l~~~a~lsaGg~l~a~~~l~----~~~~~~a~~~~GGyhHA~~ 231 (265)
+++|+.++.. +...+|+|+ +++++|.|-..+||++.. ..|+.|.+.--+++. ....++.+.+.|||--++.
T Consensus 229 ddeYLrkl~r~l~~sl~ef~Pd~VvYNAGTDiLeGDpLG~L-~ISp~Gi~~RDelVFr~~R~~~iPvvMltSGGY~K~sA 307 (324)
T KOG1344|consen 229 DDEYLRKLKRCLMQSLAEFRPDMVVYNAGTDILEGDPLGNL-AISPEGIIERDELVFRTFRALGIPVVMLTSGGYLKASA 307 (324)
T ss_pred chHHHHHHHHHHHHHHHhhCCcEEEEeCCCccccCCCCCCe-eecccccchhhHHHHHHHHHcCCcEEEEecCceehhhh
Confidence 7889888864 344558898 568999999999999987 588888776655553 3345677888999875543
No 8
>KOG1342|consensus
Probab=99.86 E-value=2e-22 Score=181.54 Aligned_cols=107 Identities=66% Similarity=1.131 Sum_probs=97.4
Q ss_pred CCHHHHHHHHhhCCCcc---CCC-CCeeecCCCCccCcccccccccHhHHHHHHHHHhhhccceeeccCCCcCcccCCCC
Q psy1924 159 FTPDFFLQILIVNPFFL---YPS-FPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEA 234 (265)
Q Consensus 159 ~~~d~~~~l~~v~p~~~---~P~-i~v~aG~D~~~~d~l~~~a~lsaGg~l~a~~~l~~~~~~~a~~~~GGyhHA~~~~a 234 (265)
|+++|+..+..|.|..- .++ .-.+.|.|||++++|++.|++++||++.+++.|......+|++|.||.|||..++|
T Consensus 66 Ht~eYi~fL~~V~p~n~~~~~~~~~~fNvg~DCPvF~gL~~fC~~~~GgSl~aa~kLn~~~~dIaINW~GGlHHAKK~eA 145 (425)
T KOG1342|consen 66 HTDEYINFLQSVTPENMETFNKELKQFNVGEDCPVFDGLYDYCQLYTGGSLNAAQKLNRGECDIAINWAGGLHHAKKSEA 145 (425)
T ss_pred chHHHHHHHhhCCcccccccchHHHhcCCCCCCccccCHHHHHHHhcccchHHHHHhCCCCceEEEecCccccccccccc
Confidence 77889888877766542 233 23689999999999999999999999999999998889999999999999999999
Q ss_pred ceechhhHHHHHHHHHhhcCCeEEEEeccCC
Q psy1924 235 SGFCYVNDIVLGILELLKYHQRVLYIDVDVH 265 (265)
Q Consensus 235 ~gfC~~n~~ala~~~~~~~~~~v~i~D~D~H 265 (265)
+||||+||++|+|..|+|.++||++||+|+|
T Consensus 146 SGFCYvNDIVL~ILeLlK~h~RVLYIDIDvH 176 (425)
T KOG1342|consen 146 SGFCYVNDIVLGILELLKYHKRVLYIDIDVH 176 (425)
T ss_pred CcceeehHHHHHHHHHHHhCCceEEEEeccc
Confidence 9999999999999999999999999999999
No 9
>PTZ00063 histone deacetylase; Provisional
Probab=99.85 E-value=1.4e-21 Score=183.05 Aligned_cols=108 Identities=58% Similarity=1.051 Sum_probs=92.0
Q ss_pred cCCHHHHHHHHhhCCCccC---CCC-Ceeec--CCCCccCcccccccccHhHHHHHHHHHhhhccceeeccCCCcCcccC
Q psy1924 158 MFTPDFFLQILIVNPFFLY---PSF-PVNVG--EDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKK 231 (265)
Q Consensus 158 ~~~~d~~~~l~~v~p~~~~---P~i-~v~aG--~D~~~~d~l~~~a~lsaGg~l~a~~~l~~~~~~~a~~~~GGyhHA~~ 231 (265)
.|+++|+..+..+.+.... ..+ ...+| .||++++++++.+++++|+++.+++.+++....+|++++||+|||.+
T Consensus 62 vHs~~YI~~L~~~~~~~~~~~~~~~~~f~lg~~~D~pv~~gl~~~a~~aaGgsl~Aa~~l~~g~~~iAin~~GG~HHA~~ 141 (436)
T PTZ00063 62 FHDEEYVDFLSSISPENYRDFTYQLKRFNVGEATDCPVFDGLFEFQQSCAGASIDGAYKLNNHQADICVNWSGGLHHAKR 141 (436)
T ss_pred hCCHHHHHHHHHhChhhcccchhhhhhcccCCCCCCCcccHHHHHHHHHHhHHHHHHHHHHcCCCCEEeeCCCCCCCCcc
Confidence 4889999888765543211 111 13456 49999999999999999999999999887666799999999999999
Q ss_pred CCCceechhhHHHHHHHHHhhcCCeEEEEeccCC
Q psy1924 232 SEASGFCYVNDIVLGILELLKYHQRVLYIDVDVH 265 (265)
Q Consensus 232 ~~a~gfC~~n~~ala~~~~~~~~~~v~i~D~D~H 265 (265)
++|+|||||||+|||++++++..+||+|||||||
T Consensus 142 ~~A~GFC~~NdiaiAi~~L~~~~~RVliID~DvH 175 (436)
T PTZ00063 142 SEASGFCYINDIVLGILELLKYHARVMYIDIDVH 175 (436)
T ss_pred CCCCceeeecHHHHHHHHHHHhCCeEEEEeCCCC
Confidence 9999999999999999999998899999999999
No 10
>PTZ00346 histone deacetylase; Provisional
Probab=99.85 E-value=2.6e-21 Score=180.22 Aligned_cols=108 Identities=44% Similarity=0.790 Sum_probs=90.4
Q ss_pred cCCHHHHHHHHhhCCCc--cCCC-CCeeecCCCCccCcccccccccHhHHHHHHHHHhhhccceeeccCCCcCcccCCCC
Q psy1924 158 MFTPDFFLQILIVNPFF--LYPS-FPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEA 234 (265)
Q Consensus 158 ~~~~d~~~~l~~v~p~~--~~P~-i~v~aG~D~~~~d~l~~~a~lsaGg~l~a~~~l~~~~~~~a~~~~GGyhHA~~~~a 234 (265)
.|+++|+..+....+.. ..++ .....+.||++++++++.+++++|+++.+++.+++....++++++||+|||.+++|
T Consensus 82 vHs~~YI~~l~~~~~~~~~~~~~~~~~~~d~Dtpv~~~~~~~a~laaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a 161 (429)
T PTZ00346 82 YHTDTYLANLGLHSCRSWLWNAETSKVFFSGDCPPVEGLMEHSIATASGTLMGAVLLNSGQVDVAVHWGGGMHHSKCGEC 161 (429)
T ss_pred hCCHHHHHHHHHhcccccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEeCCCCcCcCCCCCC
Confidence 48889988886432211 1111 12346679999999999999999999999999886656689999999999999999
Q ss_pred ceechhhHHHHHHHHHhhcCCeEEEEeccCC
Q psy1924 235 SGFCYVNDIVLGILELLKYHQRVLYIDVDVH 265 (265)
Q Consensus 235 ~gfC~~n~~ala~~~~~~~~~~v~i~D~D~H 265 (265)
+|||+|||+|||+++++++.+||+|||||||
T Consensus 162 ~GFC~fNdvAIAa~~ll~~~~RVliID~DVH 192 (429)
T PTZ00346 162 SGFCYVNDIVLGILELLKCHDRVLYVDIDMH 192 (429)
T ss_pred CcchHHhHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 9999999999999999998899999999999
No 11
>KOG1343|consensus
Probab=99.83 E-value=2.2e-21 Score=192.10 Aligned_cols=230 Identities=17% Similarity=0.158 Sum_probs=169.6
Q ss_pred CCHHHHHHHHhhCCCCCCC-CCCc-ccCCCCCCChhHHHHHHHHhhHHHHHHHHHhccC--CceEEecCCCCCCcccCCC
Q psy1924 2 FTPDFFLQILIVNPFFLYP-SFPV-NVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQA--SEICINWGGGLHHAKKSEA 77 (265)
Q Consensus 2 ~~~~yv~~~~~~~p~~~~~-~~~~-~~~~d~~~~~~~~~~~~~~~g~~~~a~~~~~~~~--~~~a~~~~~g~HHa~~~~~ 77 (265)
++++|++++..+...-+.. .... .-.+..+.++.++..+..++|+.+...+.+..++ +..+..+|+| ||+.++..
T Consensus 92 ~~ke~~~~~~~t~~~~~e~~l~~~~~~~~~~~~~~~s~~~a~~a~~~~~~~~~~~~~~~~~n~~a~v~p~~-hhsep~~~ 170 (797)
T KOG1343|consen 92 HVKEKLQEFLLSKKMTAEEGLNHSSSRYPSLYYTSASHSSADQASGSLSGSYKAVLAGKASNGKADFRPPG-HHSEPNLK 170 (797)
T ss_pred ccHHHHHHHHhhhhhcchhhhhcccCCCCcceecCCchhhhcccCcccccccccccCCcccCccCcCCCCC-Cccccchh
Confidence 5788998885544221111 1222 2235688899999999999999999877777664 6677889898 99999999
Q ss_pred CcccccchHHHHHHHHHHhC--CcEEEEeccccCCCcceeccee--cCceEEEEccCcC--CCCCC--CCCCCccccCc-
Q psy1924 78 SGFCYVNDIVLGILELLKYH--QRVLYIDVDVHHGDGVEEAFYT--TDRVMTVSFHKYG--EYFPG--TGDLRDMERVE- 148 (265)
Q Consensus 78 ~Gfc~~n~~a~a~~~~~~~~--~rv~iiD~D~h~g~G~~~~f~~--d~~vl~~S~h~~~--~~~P~--~g~~~~~g~g~- 148 (265)
.|||+|||||++.+....+. +||.|+|||+|||+|||..|++ |++|+++|+|++. +|||. .|..+.+|.+.
T Consensus 171 ~~~cl~n~Va~~~~~~~~~~~~rri~i~d~dvh~g~Gtq~~~~~~~d~~vl~~s~~r~e~~~f~P~~~~g~~~~~~~g~~ 250 (797)
T KOG1343|consen 171 VGFCLFNNVAERRSSPLLRRKKRRILIVDWDVHHGPGTQPSSPNNGDQRVLYFSLHRLETGPFLPNITLGLATLRGGGPG 250 (797)
T ss_pred cchhHHHHHHHHhhccccccccceeEeecccccCCCCCCCccCCCcccccccccchhcccCCcCCCCccchHHHhCcCCC
Confidence 99999999999999777665 9999999999999999999999 9999999999976 49996 34444455443
Q ss_pred ---eeeEEeeccc-CCHHHHHHH-Hh--hCCCccCCC-CCeeecCCCCccCc-ccccccccHhHHHHHHHHHhhhc-cce
Q psy1924 149 ---KFNVIESRVM-FTPDFFLQI-LI--VNPFFLYPS-FPVNVGEDCPVFDG-LYEFCQLSAGGSVAAAVKLNKQA-SEI 218 (265)
Q Consensus 149 ---~~ni~~~~~~-~~~d~~~~l-~~--v~p~~~~P~-i~v~aG~D~~~~d~-l~~~a~lsaGg~l~a~~~l~~~~-~~~ 218 (265)
.+|++++... .+.+|...+ .. .+..+++|+ +++++|+|++.+|+ +..+ ..+..++..++....... ..+
T Consensus 251 ~g~~~nl~~~~~g~~~~dy~~~~~~~~~~~~~efqp~Lv~~sag~dA~lg~~~~~~m-~~tP~~~~~~~~~~~~~~r~~l 329 (797)
T KOG1343|consen 251 LGQTGNLPWNQVGMTDADYEAAFLHVLLPHASEFQPDLLLVSAGFDALLGDGPVGLM-AQTPLGYAHRTSMHRPLGRGQL 329 (797)
T ss_pred cceeeccchhhcCCcchhhhhhhhccCccchhhcCcceEEeeccccccccCcccCcc-cCCcccHHHHhccccccccCcc
Confidence 4577776653 356666422 22 334457888 56899999999996 4666 455566655555423223 578
Q ss_pred eeccCCCcCcccCCC
Q psy1924 219 CINWGGGLHHAKKSE 233 (265)
Q Consensus 219 a~~~~GGyhHA~~~~ 233 (265)
++.++|||++.....
T Consensus 330 ~v~~e~gy~le~l~~ 344 (797)
T KOG1343|consen 330 VVVLEGGYFLEKLAQ 344 (797)
T ss_pred ceecchhHHHHHHHH
Confidence 889999999876544
No 12
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.81 E-value=4.6e-20 Score=168.93 Aligned_cols=103 Identities=33% Similarity=0.479 Sum_probs=88.2
Q ss_pred cCCHHHHHHHHhhCCCccCCCCCeeecCCCCccCcccccccccHhHHHHHHHHHhhhc-cceeeccCCCcCcccCCCCce
Q psy1924 158 MFTPDFFLQILIVNPFFLYPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQA-SEICINWGGGLHHAKKSEASG 236 (265)
Q Consensus 158 ~~~~d~~~~l~~v~p~~~~P~i~v~aG~D~~~~d~l~~~a~lsaGg~l~a~~~l~~~~-~~~a~~~~GGyhHA~~~~a~g 236 (265)
.|+++|+..+....+.. ...+.+.||++++++++.+++++|+++++++.+++.+ ..+|..+||| |||.+++++|
T Consensus 60 vH~~~yv~~l~~~~~~~----~~~~~d~d~~~s~~~~~~a~~a~G~al~A~~~v~~g~~~~~~~~rppg-HHA~~~~a~G 134 (340)
T COG0123 60 VHSPDYVEFLESLSEEE----GYGNLDGDTPVSPGTYEAARLAAGGALTAVDAVLEGEDNAFALVRPPG-HHAGRDRASG 134 (340)
T ss_pred hCCHHHHHHHHHhcccc----ccccccCCCccChHHHHHHHHHhhHHHHHHHHHHcCccceEEECCCCc-ccccCCCCce
Confidence 47888888776554431 1468899999999999999999999999999988664 4566666777 9999999999
Q ss_pred echhhHHHHHHHHHhhc-CCeEEEEeccCC
Q psy1924 237 FCYVNDIVLGILELLKY-HQRVLYIDVDVH 265 (265)
Q Consensus 237 fC~~n~~ala~~~~~~~-~~~v~i~D~D~H 265 (265)
||+|||+|||+++++++ .+||+|||||+|
T Consensus 135 FC~fNn~Aiaa~~l~~~~~~RVaIiD~DvH 164 (340)
T COG0123 135 FCLFNNVAIAAKYLLKKGVKRVAIIDFDVH 164 (340)
T ss_pred eeeecHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 99999999999999997 599999999999
No 13
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=99.79 E-value=5.8e-20 Score=167.25 Aligned_cols=107 Identities=28% Similarity=0.418 Sum_probs=80.7
Q ss_pred cCCHHHHHHHHhhCCCccCCC-C---C---eeecCCCCccCcccccccccHhHHHHHHHHHhhh--ccceeeccCCCcCc
Q psy1924 158 MFTPDFFLQILIVNPFFLYPS-F---P---VNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQ--ASEICINWGGGLHH 228 (265)
Q Consensus 158 ~~~~d~~~~l~~v~p~~~~P~-i---~---v~aG~D~~~~d~l~~~a~lsaGg~l~a~~~l~~~--~~~~a~~~~GGyhH 228 (265)
.|+++|+..+....+...... . . ..-+.|+++++.+++.+++++|+.+.+++.+.+. ...+|+++||| ||
T Consensus 46 vH~~~Yv~~l~~~~~~~~~~~~~~~~~~~~~~~~~dt~~~~~~~~~a~~a~g~~l~a~~~v~~g~~~~~~a~~rppg-HH 124 (311)
T PF00850_consen 46 VHDPEYVDFLESASKEAKEEEEAGSPEFPNILDDGDTPISPGSWEAARLAAGGTLEAADAVLSGEIKNAFALVRPPG-HH 124 (311)
T ss_dssp TS-HHHHHHHHHHHHHTSGCTHHHHHHHCCBTSSSSSEBCTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEEEESS---TT
T ss_pred cCCHHHHHHHHHhcccccccccccccccccccCCCCcceehHHHHHHHHHHHHHHHHHHhhhcccccceeeecCccc-cc
Confidence 589999988864322110000 0 0 0117899999999999999999999999999865 46788887777 99
Q ss_pred ccCCCCceechhhHHHHHHHHHhhcC--CeEEEEeccCC
Q psy1924 229 AKKSEASGFCYVNDIVLGILELLKYH--QRVLYIDVDVH 265 (265)
Q Consensus 229 A~~~~a~gfC~~n~~ala~~~~~~~~--~~v~i~D~D~H 265 (265)
|.+++++|||+|||+|||+++++++. +||+|||||+|
T Consensus 125 A~~~~a~GFC~~Nnvaiaa~~l~~~~~~~rV~iiD~DvH 163 (311)
T PF00850_consen 125 AERDRAMGFCYFNNVAIAAKYLRKKYGLKRVAIIDFDVH 163 (311)
T ss_dssp -BTTBBBTTBSS-HHHHHHHHHHHTTTTSSEEEEE-SSS
T ss_pred cCcCcCcceeeeccHHHHHHHHhhccccceEEEEEeCCC
Confidence 99999999999999999999999853 89999999999
No 14
>KOG1344|consensus
Probab=98.92 E-value=4.8e-10 Score=96.11 Aligned_cols=77 Identities=36% Similarity=0.599 Sum_probs=64.3
Q ss_pred CCccCcccccccccHhHHHHHHHHHhhhccceeeccCCCcCcccCCCCceechhhHHHHHHHHHhhc--CCeEEEEeccC
Q psy1924 187 CPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKY--HQRVLYIDVDV 264 (265)
Q Consensus 187 ~~~~d~l~~~a~lsaGg~l~a~~~l~~~~~~~a~~~~GGyhHA~~~~a~gfC~~n~~ala~~~~~~~--~~~v~i~D~D~ 264 (265)
+.+...+..-.++.+||++.++++..+ +.++++.+||+||+..++++|||.+-|+.+++..+.++ ..|+.|+|+|+
T Consensus 104 ~~iqrk~LrPlR~QagGtilA~kLAle--~GWAINvGGGFHHcss~rGGGFC~yADItl~I~~lFer~~isr~mivDLDA 181 (324)
T KOG1344|consen 104 CIIQRKLLRPLRLQAGGTILAAKLALE--RGWAINVGGGFHHCSSSRGGGFCAYADITLAIFFLFERKAISRAMIVDLDA 181 (324)
T ss_pred hhhhhhhccceeeccCceeehhhhhhh--cCeEEeecCccceeccCCCCceeehhhHHHHHHHHHhhhhhhheEEEeccc
Confidence 344444445557888999998876655 58999999999999999999999999999999888655 48999999999
Q ss_pred C
Q psy1924 265 H 265 (265)
Q Consensus 265 H 265 (265)
|
T Consensus 182 H 182 (324)
T KOG1344|consen 182 H 182 (324)
T ss_pred c
Confidence 8
No 15
>KOG0121|consensus
Probab=63.20 E-value=6.4 Score=31.44 Aligned_cols=44 Identities=25% Similarity=0.353 Sum_probs=30.7
Q ss_pred ccCCCCccccc----c-hHHHHHHHHHHh--CCcEEEEeccccCCCcceec
Q psy1924 73 KKSEASGFCYV----N-DIVLGILELLKY--HQRVLYIDVDVHHGDGVEEA 116 (265)
Q Consensus 73 ~~~~~~Gfc~~----n-~~a~a~~~~~~~--~~rv~iiD~D~h~g~G~~~~ 116 (265)
....++|||++ + +.-.|.+|+-.. -+|++-+|||.=.=+|-|.-
T Consensus 73 ~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~GF~eGRQyG 123 (153)
T KOG0121|consen 73 FKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAGFVEGRQYG 123 (153)
T ss_pred CCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccccchhhhhhc
Confidence 45678999987 3 444555665443 38999999998776666643
No 16
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=58.89 E-value=11 Score=32.27 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=14.5
Q ss_pred HhCCcEEEEeccccCCC
Q psy1924 95 KYHQRVLYIDVDVHHGD 111 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~ 111 (265)
++..||++||+|..+||
T Consensus 27 ~~g~~VlliD~D~~~~~ 43 (251)
T TIGR01969 27 KLGKKVLALDADITMAN 43 (251)
T ss_pred HCCCeEEEEeCCCCCcc
Confidence 44689999999998876
No 17
>PRK13236 nitrogenase reductase; Reviewed
Probab=56.34 E-value=13 Score=33.45 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=17.2
Q ss_pred hCCcEEEEeccccCCCcceecce
Q psy1924 96 YHQRVLYIDVDVHHGDGVEEAFY 118 (265)
Q Consensus 96 ~~~rv~iiD~D~h~g~G~~~~f~ 118 (265)
+.+||++||+|.+.++ +..++.
T Consensus 33 ~G~rVLliD~D~q~~~-~~~l~~ 54 (296)
T PRK13236 33 MGQRILIVGCDPKADS-TRLMLH 54 (296)
T ss_pred CCCcEEEEEccCCCCc-cchhcc
Confidence 4799999999998877 555543
No 18
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=49.46 E-value=16 Score=29.33 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=16.7
Q ss_pred HHHhCCcEEEEeccccCCCcce
Q psy1924 93 LLKYHQRVLYIDVDVHHGDGVE 114 (265)
Q Consensus 93 ~~~~~~rv~iiD~D~h~g~G~~ 114 (265)
+.++..||++||+|..+++-+.
T Consensus 24 l~~~g~~vllvD~D~~~~~~~~ 45 (179)
T cd02036 24 LAQLGYKVVLIDADLGLRNLDL 45 (179)
T ss_pred HHhCCCeEEEEeCCCCCCCchh
Confidence 3345789999999998776443
No 19
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=48.26 E-value=23 Score=26.55 Aligned_cols=15 Identities=47% Similarity=0.904 Sum_probs=14.1
Q ss_pred CCcEEEEeccccCCC
Q psy1924 97 HQRVLYIDVDVHHGD 111 (265)
Q Consensus 97 ~~rv~iiD~D~h~g~ 111 (265)
..+|+++|+|.++++
T Consensus 29 ~~~~~l~d~d~~~~~ 43 (106)
T cd03111 29 GRRVLLVDLDLQFGD 43 (106)
T ss_pred CCcEEEEECCCCCCC
Confidence 799999999999987
No 20
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=47.44 E-value=21 Score=30.14 Aligned_cols=17 Identities=35% Similarity=0.657 Sum_probs=14.0
Q ss_pred HhCCcEEEEeccccCCC
Q psy1924 95 KYHQRVLYIDVDVHHGD 111 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~ 111 (265)
...+||++||+|.+.++
T Consensus 63 ~~g~~VLlvD~D~~~~~ 79 (207)
T TIGR03018 63 EYDKTVLLIDADLRRPS 79 (207)
T ss_pred hcCCeEEEEECCCCChh
Confidence 34799999999998764
No 21
>CHL00175 minD septum-site determining protein; Validated
Probab=46.36 E-value=23 Score=31.25 Aligned_cols=20 Identities=25% Similarity=0.184 Sum_probs=16.3
Q ss_pred HhCCcEEEEeccccCCCcce
Q psy1924 95 KYHQRVLYIDVDVHHGDGVE 114 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~G~~ 114 (265)
+...||++||+|..+||-+.
T Consensus 42 ~~g~~vlliD~D~~~~~l~~ 61 (281)
T CHL00175 42 RLGYRVALIDADIGLRNLDL 61 (281)
T ss_pred hCCCeEEEEeCCCCCCChhh
Confidence 44689999999999887554
No 22
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=45.34 E-value=17 Score=29.70 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=13.0
Q ss_pred CcEEEEeccccCCCc
Q psy1924 98 QRVLYIDVDVHHGDG 112 (265)
Q Consensus 98 ~rv~iiD~D~h~g~G 112 (265)
+||++||.|...++-
T Consensus 25 ~~vlliD~D~~~~~~ 39 (179)
T cd03110 25 KNVVLADCDVDAPNL 39 (179)
T ss_pred hCcEEEECCCCCCch
Confidence 799999999998763
No 23
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=44.42 E-value=23 Score=31.15 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=14.6
Q ss_pred HhCCcEEEEeccccCCCccee
Q psy1924 95 KYHQRVLYIDVDVHHGDGVEE 115 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~G~~~ 115 (265)
++..||++||+|.. ||.+..
T Consensus 26 ~~G~~VlliD~D~q-~~~~~~ 45 (275)
T TIGR01287 26 EMGKKVMIVGCDPK-ADSTRL 45 (275)
T ss_pred HCCCeEEEEeCCCC-CCcccc
Confidence 34689999999996 444443
No 24
>PRK10818 cell division inhibitor MinD; Provisional
Probab=44.24 E-value=27 Score=30.54 Aligned_cols=18 Identities=17% Similarity=0.242 Sum_probs=14.8
Q ss_pred HhCCcEEEEeccccCCCc
Q psy1924 95 KYHQRVLYIDVDVHHGDG 112 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~G 112 (265)
++.+||++||+|.+.+|-
T Consensus 29 ~~g~~vllvD~D~~~~~~ 46 (270)
T PRK10818 29 QKGKKTVVIDFDIGLRNL 46 (270)
T ss_pred HCCCeEEEEECCCCCCCh
Confidence 346899999999987774
No 25
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=44.02 E-value=21 Score=31.22 Aligned_cols=21 Identities=33% Similarity=0.316 Sum_probs=15.9
Q ss_pred HhCCcEEEEeccccCCCcceec
Q psy1924 95 KYHQRVLYIDVDVHHGDGVEEA 116 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~G~~~~ 116 (265)
++.+||++||+|. |||-++.+
T Consensus 26 ~~g~rVLliD~D~-q~~~~~~l 46 (268)
T TIGR01281 26 KLGKRVLQIGCDP-KHDSTFTL 46 (268)
T ss_pred hCCCeEEEEecCc-ccccccee
Confidence 4578999999998 56666533
No 26
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=42.49 E-value=19 Score=32.07 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=10.1
Q ss_pred HHHhCCcEEEEeccccCC
Q psy1924 93 LLKYHQRVLYIDVDVHHG 110 (265)
Q Consensus 93 ~~~~~~rv~iiD~D~h~g 110 (265)
|.+...||.++|+|+++-
T Consensus 25 La~~G~kVg~lD~Di~q~ 42 (261)
T PF09140_consen 25 LARMGKKVGLLDLDIRQP 42 (261)
T ss_dssp HHCTT--EEEEE--TTT-
T ss_pred HHHCCCeEEEEecCCCCC
Confidence 445579999999999754
No 27
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=41.88 E-value=30 Score=30.57 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=16.2
Q ss_pred HhCCcEEEEeccccCCCcceec
Q psy1924 95 KYHQRVLYIDVDVHHGDGVEEA 116 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~G~~~~ 116 (265)
+..+||++||+|. |||=++.+
T Consensus 27 ~~G~rVLliD~Dp-q~n~t~~l 47 (279)
T PRK13230 27 ESGKKVLVVGCDP-KADCTRNL 47 (279)
T ss_pred hCCCEEEEEeeCC-cccccccc
Confidence 4468999999999 56666654
No 28
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=41.31 E-value=30 Score=30.47 Aligned_cols=17 Identities=12% Similarity=0.305 Sum_probs=14.0
Q ss_pred HhCCcEEEEeccccCCC
Q psy1924 95 KYHQRVLYIDVDVHHGD 111 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~ 111 (265)
++.+||++||+|.+..+
T Consensus 27 ~~G~rVllvD~Dpq~~~ 43 (273)
T PRK13232 27 TMGNKILLVGCDPKADS 43 (273)
T ss_pred hhCCCeEEEeccccccc
Confidence 34789999999998654
No 29
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=41.11 E-value=23 Score=31.01 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=15.0
Q ss_pred HhCCcEEEEeccccCCCccee
Q psy1924 95 KYHQRVLYIDVDVHHGDGVEE 115 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~G~~~ 115 (265)
++.+||++||+|. |||=+..
T Consensus 28 ~~G~kVLliD~Dp-q~~~t~~ 47 (270)
T PRK13185 28 KLGKKVLQIGCDP-KHDSTFT 47 (270)
T ss_pred HCCCeEEEEeccC-Ccchhhh
Confidence 4578999999997 5665543
No 30
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=40.78 E-value=26 Score=31.55 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=16.8
Q ss_pred HHHhCCcEEEEeccccCCCcceecc
Q psy1924 93 LLKYHQRVLYIDVDVHHGDGVEEAF 117 (265)
Q Consensus 93 ~~~~~~rv~iiD~D~h~g~G~~~~f 117 (265)
+.+..+||++||+|....+ |...|
T Consensus 28 la~~g~kVLliD~D~q~~~-~~~~~ 51 (295)
T PRK13234 28 LVEMGQKILIVGCDPKADS-TRLIL 51 (295)
T ss_pred HHHCCCeEEEEeccccccc-ccccc
Confidence 3345789999999997555 44343
No 31
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=39.70 E-value=35 Score=29.32 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=14.7
Q ss_pred HhCCcEEEEeccccCCCc
Q psy1924 95 KYHQRVLYIDVDVHHGDG 112 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~G 112 (265)
+...||++||+|...||=
T Consensus 28 ~~g~~vlliD~D~~~~~~ 45 (261)
T TIGR01968 28 RLGKKVVLIDADIGLRNL 45 (261)
T ss_pred HcCCeEEEEECCCCCCCe
Confidence 457899999999987763
No 32
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=39.02 E-value=35 Score=29.68 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=15.2
Q ss_pred HhCCcEEEEeccccCCCccee
Q psy1924 95 KYHQRVLYIDVDVHHGDGVEE 115 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~G~~~ 115 (265)
++.+||++||+|. |||-+..
T Consensus 27 ~~G~kVlliD~Dp-q~n~~~~ 46 (270)
T cd02040 27 EMGKKVMIVGCDP-KADSTRL 46 (270)
T ss_pred hCCCeEEEEEcCC-CCCchhh
Confidence 4578999999999 5665543
No 33
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=37.90 E-value=33 Score=30.18 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=13.0
Q ss_pred hCCcEEEEeccccCCC
Q psy1924 96 YHQRVLYIDVDVHHGD 111 (265)
Q Consensus 96 ~~~rv~iiD~D~h~g~ 111 (265)
..+||++||+|.+..+
T Consensus 30 ~G~rvLliD~Dpq~~~ 45 (275)
T PRK13233 30 HDKKVFIHGCDPKADS 45 (275)
T ss_pred cCCeEEEeccCcCcCh
Confidence 4789999999997543
No 34
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=35.24 E-value=38 Score=29.63 Aligned_cols=19 Identities=32% Similarity=0.305 Sum_probs=14.4
Q ss_pred HhCCcEEEEeccccCCCcce
Q psy1924 95 KYHQRVLYIDVDVHHGDGVE 114 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~G~~ 114 (265)
++.+||++||+|. |||=+.
T Consensus 26 ~~G~rvlliD~Dp-q~~~~~ 44 (267)
T cd02032 26 KRGKKVLQIGCDP-KHDSTF 44 (267)
T ss_pred HCCCcEEEEecCC-CCCcce
Confidence 5579999999997 465444
No 35
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=34.52 E-value=40 Score=28.42 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=15.9
Q ss_pred HhCCcEEEEeccccCCCcceecc
Q psy1924 95 KYHQRVLYIDVDVHHGDGVEEAF 117 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~G~~~~f 117 (265)
+..+||++||+|.. ||-+...+
T Consensus 26 ~~G~rvLliD~D~q-~~~~~~~~ 47 (212)
T cd02117 26 EMGKKVLQVGCDPK-ADSTRLLL 47 (212)
T ss_pred HCCCcEEEEeCCCC-CCcccccc
Confidence 45789999999964 66555443
No 36
>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent
Probab=34.30 E-value=14 Score=25.52 Aligned_cols=9 Identities=44% Similarity=1.143 Sum_probs=6.9
Q ss_pred CcccccchH
Q psy1924 78 SGFCYVNDI 86 (265)
Q Consensus 78 ~Gfc~~n~~ 86 (265)
.=|||+||-
T Consensus 16 TKFcYyNNy 24 (63)
T PF02701_consen 16 TKFCYYNNY 24 (63)
T ss_pred CEEEeecCC
Confidence 449999985
No 37
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=32.56 E-value=38 Score=28.91 Aligned_cols=16 Identities=31% Similarity=0.283 Sum_probs=12.6
Q ss_pred HhCCcEEEEeccccCCC
Q psy1924 95 KYHQRVLYIDVDVHHGD 111 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~ 111 (265)
++.+||++||+|. +|+
T Consensus 28 ~~g~~VlliD~D~-q~~ 43 (246)
T TIGR03371 28 LLGEPVLAIDLDP-QNL 43 (246)
T ss_pred hCCCcEEEEeCCC-cch
Confidence 3578999999998 443
No 38
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=30.22 E-value=58 Score=29.36 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=13.2
Q ss_pred HhCCcEEEEeccccCC
Q psy1924 95 KYHQRVLYIDVDVHHG 110 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g 110 (265)
++.+||++||+|...+
T Consensus 26 ~~g~rVLlID~Dpq~~ 41 (296)
T TIGR02016 26 EMGKRVLQLGCDPKHD 41 (296)
T ss_pred HCCCeEEEEEecCCCC
Confidence 4578999999999754
No 39
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=29.86 E-value=61 Score=28.71 Aligned_cols=41 Identities=24% Similarity=0.480 Sum_probs=29.4
Q ss_pred CCc-ccccchHHHHH-HHHHHhCCcEEEEeccc---cCCCcceecc
Q psy1924 77 ASG-FCYVNDIVLGI-LELLKYHQRVLYIDVDV---HHGDGVEEAF 117 (265)
Q Consensus 77 ~~G-fc~~n~~a~a~-~~~~~~~~rv~iiD~D~---h~g~G~~~~f 117 (265)
++| ||..|+.+=.+ +++.....-+.|||..+ |.|-||.+-.
T Consensus 111 GeGC~Cp~~allR~~l~~l~~~~~e~VivDtEAGiEHfgRg~~~~v 156 (255)
T COG3640 111 GEGCACPMNALLRRLLRHLILNRYEVVIVDTEAGIEHFGRGTIEGV 156 (255)
T ss_pred CCcccchHHHHHHHHHHHHhcccCcEEEEecccchhhhccccccCC
Confidence 455 99999886544 22323347899999997 9999988753
No 40
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=28.15 E-value=70 Score=26.89 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhcCCeEEEEeccCC
Q psy1924 242 DIVLGILELLKYHQRVLYIDVDVH 265 (265)
Q Consensus 242 ~~ala~~~~~~~~~~v~i~D~D~H 265 (265)
.+.+|...++..++||++||.|.+
T Consensus 53 a~nLA~~la~~~g~~VLlvD~D~~ 76 (207)
T TIGR03018 53 AINLAISLAQEYDKTVLLIDADLR 76 (207)
T ss_pred HHHHHHHHHHhcCCeEEEEECCCC
Confidence 334444445555799999999963
No 41
>PHA02518 ParA-like protein; Provisional
Probab=27.34 E-value=57 Score=26.96 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=15.1
Q ss_pred HHHhCCcEEEEeccccCCCcce
Q psy1924 93 LLKYHQRVLYIDVDVHHGDGVE 114 (265)
Q Consensus 93 ~~~~~~rv~iiD~D~h~g~G~~ 114 (265)
+.++..||++||+|. |++-+.
T Consensus 25 la~~g~~vlliD~D~-q~~~~~ 45 (211)
T PHA02518 25 LHADGHKVLLVDLDP-QGSSTD 45 (211)
T ss_pred HHhCCCeEEEEeCCC-CCChHH
Confidence 334579999999996 555444
No 42
>PRK10037 cell division protein; Provisional
Probab=26.47 E-value=52 Score=28.56 Aligned_cols=19 Identities=26% Similarity=0.074 Sum_probs=14.1
Q ss_pred HHHhCCcEEEEeccccCCCc
Q psy1924 93 LLKYHQRVLYIDVDVHHGDG 112 (265)
Q Consensus 93 ~~~~~~rv~iiD~D~h~g~G 112 (265)
|.++.+||++||+|.. ++-
T Consensus 26 La~~G~rVLlID~D~q-~~~ 44 (250)
T PRK10037 26 LQMLGENVLVIDACPD-NLL 44 (250)
T ss_pred HHhcCCcEEEEeCChh-hhH
Confidence 3345789999999994 553
No 43
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=25.94 E-value=80 Score=27.72 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=14.7
Q ss_pred HhCCcEEEEeccccCCCcceec
Q psy1924 95 KYHQRVLYIDVDVHHGDGVEEA 116 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~G~~~~ 116 (265)
+..+||++||+|... |=|..+
T Consensus 27 ~~G~rVLlID~Dpq~-~~t~~l 47 (274)
T PRK13235 27 EMGKKVMVVGCDPKA-DSTRLL 47 (274)
T ss_pred HCCCcEEEEecCCcc-cccccc
Confidence 346899999999954 434443
No 44
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=25.55 E-value=61 Score=30.30 Aligned_cols=19 Identities=32% Similarity=0.232 Sum_probs=14.5
Q ss_pred HhCCcEEEEeccccCCCcce
Q psy1924 95 KYHQRVLYIDVDVHHGDGVE 114 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~G~~ 114 (265)
+...||++||+|. ||+=+.
T Consensus 131 ~~G~rVLlID~Dp-Q~~ls~ 149 (387)
T TIGR03453 131 LRGYRVLAIDLDP-QASLSA 149 (387)
T ss_pred hcCCCEEEEecCC-CCCHHH
Confidence 3468999999997 676443
No 45
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=24.85 E-value=60 Score=30.74 Aligned_cols=21 Identities=29% Similarity=0.241 Sum_probs=15.4
Q ss_pred HHHhCCcEEEEeccccCCCcce
Q psy1924 93 LLKYHQRVLYIDVDVHHGDGVE 114 (265)
Q Consensus 93 ~~~~~~rv~iiD~D~h~g~G~~ 114 (265)
|.+...||++||+|. ||+=+.
T Consensus 146 LA~~G~rVLlIDlDp-Q~~lt~ 166 (405)
T PRK13869 146 LALQGYRVLAVDLDP-QASLSA 166 (405)
T ss_pred HHhcCCceEEEcCCC-CCCHHH
Confidence 334578999999999 466444
No 46
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=23.59 E-value=90 Score=25.22 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=12.6
Q ss_pred HHHHhCCcEEEEeccccC
Q psy1924 92 ELLKYHQRVLYIDVDVHH 109 (265)
Q Consensus 92 ~~~~~~~rv~iiD~D~h~ 109 (265)
++.++..||++||+|.--
T Consensus 22 ~la~~g~~VlliD~D~~~ 39 (195)
T PF01656_consen 22 ALARKGKKVLLIDLDPQA 39 (195)
T ss_dssp HHHHTTS-EEEEEESTTS
T ss_pred ccccccccccccccCccc
Confidence 333467999999999843
No 47
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=23.47 E-value=82 Score=27.25 Aligned_cols=22 Identities=27% Similarity=0.199 Sum_probs=16.1
Q ss_pred hCCcEEEEeccccCCCcceecce
Q psy1924 96 YHQRVLYIDVDVHHGDGVEEAFY 118 (265)
Q Consensus 96 ~~~rv~iiD~D~h~g~G~~~~f~ 118 (265)
..+||+.||+|.. |+-|.....
T Consensus 31 ~~~kVLliDlDpQ-~s~t~~~~~ 52 (259)
T COG1192 31 GGKKVLLIDLDPQ-GSLTSWLGL 52 (259)
T ss_pred cCCcEEEEeCCCc-chhhHhcCC
Confidence 3489999999997 665555443
No 48
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=22.97 E-value=95 Score=24.94 Aligned_cols=14 Identities=29% Similarity=0.358 Sum_probs=11.8
Q ss_pred HhCCcEEEEecccc
Q psy1924 95 KYHQRVLYIDVDVH 108 (265)
Q Consensus 95 ~~~~rv~iiD~D~h 108 (265)
+...||++||+|.-
T Consensus 26 ~~g~~vllvD~D~q 39 (169)
T cd02037 26 KLGYKVGLLDADIY 39 (169)
T ss_pred HcCCcEEEEeCCCC
Confidence 45799999999983
No 49
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=21.92 E-value=1e+02 Score=27.81 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=12.8
Q ss_pred HhCCcEEEEeccccCC
Q psy1924 95 KYHQRVLYIDVDVHHG 110 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g 110 (265)
++.+||++||+|...|
T Consensus 120 ~~g~~VlLvD~D~~~~ 135 (322)
T TIGR03815 120 RHGLRTLLVDADPWGG 135 (322)
T ss_pred hcCCCEEEEecCCCCC
Confidence 4468999999997654
No 50
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=21.90 E-value=99 Score=25.69 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=12.8
Q ss_pred HhCCcEEEEeccccCC
Q psy1924 95 KYHQRVLYIDVDVHHG 110 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g 110 (265)
+...||++||+|....
T Consensus 44 ~~G~rVllID~D~~~~ 59 (204)
T TIGR01007 44 QAGYKTLLIDGDMRNS 59 (204)
T ss_pred hCCCeEEEEeCCCCCh
Confidence 3468999999998654
No 51
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=21.69 E-value=97 Score=28.58 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=17.7
Q ss_pred HHhCCcEEEEeccccCCCcceecce
Q psy1924 94 LKYHQRVLYIDVDVHHGDGVEEAFY 118 (265)
Q Consensus 94 ~~~~~rv~iiD~D~h~g~G~~~~f~ 118 (265)
.++.+||++||.|.++++ +...|.
T Consensus 56 a~~g~rVllid~D~~~~~-~~~~~g 79 (329)
T cd02033 56 AQQGKRVLLIGCDPKSDT-TSLLFG 79 (329)
T ss_pred HHCCCcEEEEEeeecccc-cchhcc
Confidence 345789999999998764 555554
No 52
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=21.51 E-value=72 Score=28.65 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=14.4
Q ss_pred HhCCcEEEEeccccCCCcce
Q psy1924 95 KYHQRVLYIDVDVHHGDGVE 114 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~G~~ 114 (265)
+..+||++||+|.. ||=+.
T Consensus 26 ~~G~rVLlID~DpQ-~n~t~ 44 (290)
T CHL00072 26 RRGKKVLQIGCDPK-HDSTF 44 (290)
T ss_pred HCCCeEEEEeccCC-Ccccc
Confidence 45789999999986 55444
Done!