Query psy1924
Match_columns 265
No_of_seqs 187 out of 2244
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 19:47:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1924.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1924hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a69_A Histone deacetylase 3,; 100.0 1.4E-58 4.9E-63 425.9 13.4 241 3-246 63-316 (376)
2 3max_A HD2, histone deacetylas 100.0 1.5E-58 5.2E-63 423.8 12.6 241 3-246 63-315 (367)
3 3ew8_A HD8, histone deacetylas 100.0 7E-58 2.4E-62 421.3 15.1 241 3-246 72-324 (388)
4 1c3p_A Protein (HDLP (histone 100.0 4.6E-56 1.6E-60 410.3 12.6 239 3-246 62-315 (375)
5 3q9b_A Acetylpolyamine amidohy 100.0 1.3E-55 4.6E-60 400.8 12.2 208 22-231 110-328 (341)
6 3men_A Acetylpolyamine aminohy 100.0 2.6E-55 8.7E-60 401.1 12.7 206 23-230 130-345 (362)
7 1zz1_A Histone deacetylase-lik 100.0 1.3E-54 4.3E-59 399.9 13.9 231 3-243 77-327 (369)
8 2pqp_A HD7A, histone deacetyla 100.0 5.3E-50 1.8E-54 371.2 17.3 206 24-231 139-366 (421)
9 2vqm_A HD4, histone deacetylas 100.0 7.7E-49 2.6E-53 366.4 14.4 220 22-245 108-349 (413)
10 3ew8_A HD8, histone deacetylas 99.9 2.1E-22 7.1E-27 185.4 6.8 108 158-265 70-180 (388)
11 3max_A HD2, histone deacetylas 99.9 3.8E-22 1.3E-26 182.8 7.8 108 158-265 61-172 (367)
12 4a69_A Histone deacetylase 3,; 99.9 5.6E-22 1.9E-26 182.4 7.4 108 158-265 61-172 (376)
13 3q9b_A Acetylpolyamine amidohy 99.8 5.4E-21 1.8E-25 173.6 8.6 84 181-265 112-197 (341)
14 1zz1_A Histone deacetylase-lik 99.8 3.2E-21 1.1E-25 177.5 7.1 103 158-265 75-182 (369)
15 3men_A Acetylpolyamine aminohy 99.8 8.5E-21 2.9E-25 173.3 8.1 84 181-265 131-215 (362)
16 1c3p_A Protein (HDLP (histone 99.8 3E-20 1E-24 171.3 6.8 106 158-265 60-170 (375)
17 2pqp_A HD7A, histone deacetyla 99.7 2.3E-18 7.8E-23 159.6 5.9 83 182-265 140-227 (421)
18 2vqm_A HD4, histone deacetylas 99.7 7.3E-18 2.5E-22 157.3 5.2 84 181-265 110-198 (413)
19 1g3q_A MIND ATPase, cell divis 43.1 21 0.00071 28.8 3.9 17 95-111 29-45 (237)
20 3q9l_A Septum site-determining 42.9 21 0.00072 29.2 3.9 19 95-113 29-47 (260)
21 3ea0_A ATPase, para family; al 42.3 13 0.00046 30.2 2.5 19 97-115 34-52 (245)
22 1hyq_A MIND, cell division inh 40.9 24 0.00081 29.1 3.9 18 95-112 29-46 (263)
23 3ez2_A Plasmid partition prote 35.8 22 0.00075 31.7 3.1 16 95-111 141-156 (398)
24 3kjh_A CO dehydrogenase/acetyl 34.9 28 0.00095 28.1 3.4 16 95-111 26-41 (254)
25 1cp2_A CP2, nitrogenase iron p 32.8 27 0.00092 28.9 3.0 22 95-117 27-48 (269)
26 2xj4_A MIPZ; replication, cell 32.6 30 0.001 29.3 3.3 19 95-113 31-49 (286)
27 1wcv_1 SOJ, segregation protei 32.0 30 0.001 28.5 3.2 17 95-112 33-49 (257)
28 3ez9_A Para; DNA binding, wing 30.9 29 0.001 31.0 3.1 16 95-111 144-159 (403)
29 3la6_A Tyrosine-protein kinase 30.6 41 0.0014 28.7 3.8 17 95-111 119-135 (286)
30 3end_A Light-independent proto 29.0 44 0.0015 28.3 3.7 19 95-114 67-85 (307)
31 3fwy_A Light-independent proto 28.7 37 0.0013 29.6 3.2 18 95-113 74-91 (314)
32 3pg5_A Uncharacterized protein 27.3 37 0.0013 30.0 3.0 23 95-118 28-50 (361)
33 3cio_A ETK, tyrosine-protein k 27.3 50 0.0017 28.3 3.8 18 95-112 131-148 (299)
34 3zq6_A Putative arsenical pump 24.3 53 0.0018 28.4 3.4 15 95-110 40-54 (324)
35 3bfv_A CAPA1, CAPB2, membrane 24.2 65 0.0022 27.1 3.9 17 95-111 109-125 (271)
36 3fkq_A NTRC-like two-domain pr 24.1 58 0.002 28.7 3.7 16 95-111 170-185 (373)
37 3k9g_A PF-32 protein; ssgcid, 23.9 44 0.0015 27.6 2.7 18 96-114 54-71 (267)
38 2afh_E Nitrogenase iron protei 23.3 68 0.0023 26.8 3.9 23 95-118 28-50 (289)
39 2ph1_A Nucleotide-binding prot 22.8 58 0.002 26.9 3.3 17 95-111 45-61 (262)
40 2woj_A ATPase GET3; tail-ancho 21.7 59 0.002 28.7 3.2 14 95-108 46-59 (354)
No 1
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.4e-58 Score=425.89 Aligned_cols=241 Identities=45% Similarity=0.737 Sum_probs=211.2
Q ss_pred CHHHHHHHHhhCCCCC----CCCCCcccCCCCCCChhHHHHHHHHhhHHHHHHHHHhccCCceEEecCCCCCCcccCCCC
Q psy1924 3 TPDFFLQILIVNPFFL----YPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEAS 78 (265)
Q Consensus 3 ~~~yv~~~~~~~p~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~a~~~~~g~HHa~~~~~~ 78 (265)
|++||+.|+..+|... .+++.++++.|||+++++++++++++|++|.|++.+.+|+.++|++++||+|||.+++++
T Consensus 63 s~~Yi~~l~~~~~~~~~~~~~~~~~~~l~~Dtpv~~~~~e~a~~aaGgtl~Aa~~v~~g~~~~A~~~~gG~HHA~~~~a~ 142 (376)
T 4a69_A 63 SEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEAS 142 (376)
T ss_dssp CHHHHHHHHHCCTTTGGGGHHHHHHHTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCB
T ss_pred CHHHHHHHHHhCcccchhhhhhhceeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCcceeeeCCCCCCcCCcCCCC
Confidence 7999999998887632 124468899999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHhCCcEEEEeccccCCCcceecceecCceEEEEccCcCC-CCCCCCCCCccccC----ceeeEE
Q psy1924 79 GFCYVNDIVLGILELLKYHQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGE-YFPGTGDLRDMERV----EKFNVI 153 (265)
Q Consensus 79 Gfc~~n~~a~a~~~~~~~~~rv~iiD~D~h~g~G~~~~f~~d~~vl~~S~h~~~~-~~P~~g~~~~~g~g----~~~ni~ 153 (265)
|||+|||+||||++|++..+||+|||||||||||||++|++||+|+++|+|++++ |||++|..+++|.+ ..+|+|
T Consensus 143 GFC~~NdvAiAa~~l~~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvP 222 (376)
T 4a69_A 143 GFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVP 222 (376)
T ss_dssp TTBSSCHHHHHHHHHTTTCSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSTTCTTCCCCTTCCCCGGGTTSEEEEE
T ss_pred cchhhhHHHHHHHHHHHhCCcEEEEeccCCCCcchhhHhcCCCCEEEEecccCCCcCCCCCCCccccCCCCCCceeEeee
Confidence 9999999999999999989999999999999999999999999999999999876 89999999998765 368999
Q ss_pred eecccCCHHHHHHHHh-hCC--CccCCC-CCeeecCCCCccCcccccccccHhHHHHHHHHHhhhccceeeccCCCcCcc
Q psy1924 154 ESRVMFTPDFFLQILI-VNP--FFLYPS-FPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHA 229 (265)
Q Consensus 154 ~~~~~~~~d~~~~l~~-v~p--~~~~P~-i~v~aG~D~~~~d~l~~~a~lsaGg~l~a~~~l~~~~~~~a~~~~GGyhHA 229 (265)
++....+.+|...+.. +.| ..|+|+ +++|+|+|++..|||..+ ++|..++.+.++.+.+...+++++++|||+..
T Consensus 223 L~~G~~D~~yl~~~~~~l~p~~~~f~Pd~IvvsaG~Da~~~DpLg~l-~Lt~~g~~~~~~~l~~~~~p~v~v~eGGY~~~ 301 (376)
T 4a69_A 223 LRDGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCF-NLSIRGHGECVEYVKSFNIPLLVLGGGGYTVR 301 (376)
T ss_dssp ECTTCBHHHHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSCCC-BBCHHHHHHHHHHHHTTCCCEEEECCCCCSHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCcccCCCCCcccCe-ecCHHHHHHHHHHHHHcCCCEEEEECCCCChh
Confidence 9987666677655532 233 347898 678999999999999987 79999999999888877778999999999975
Q ss_pred cCCCCceechhhHHHHH
Q psy1924 230 KKSEASGFCYVNDIVLG 246 (265)
Q Consensus 230 ~~~~a~gfC~~n~~ala 246 (265)
.. +.+|++.+.++++
T Consensus 302 ~v--ar~w~~~~a~l~g 316 (376)
T 4a69_A 302 NV--ARCWTYETSLLVE 316 (376)
T ss_dssp HH--HHHHHHHHHHHTT
T ss_pred HH--HHHHHHHHHHhcC
Confidence 44 5588888877765
No 2
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.5e-58 Score=423.81 Aligned_cols=241 Identities=51% Similarity=0.804 Sum_probs=210.8
Q ss_pred CHHHHHHHHhhCCCCC----CCCCCcccCCCCCCChhHHHHHHHHhhHHHHHHHHHhccCCceEEecCCCCCCcccCCCC
Q psy1924 3 TPDFFLQILIVNPFFL----YPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEAS 78 (265)
Q Consensus 3 ~~~yv~~~~~~~p~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~a~~~~~g~HHa~~~~~~ 78 (265)
|++||+.|+..+|.+. .++++++++.|||+++++++++++++|++|.|++.+.+++.++|++||||+|||.+++++
T Consensus 63 s~~Yi~~l~~~~~~~~~~~~~~~~~~~l~~Dtp~~~~~~e~a~~aaGgsl~aa~~v~~~~~~~Ai~~pgG~HHA~~~~a~ 142 (367)
T 3max_A 63 SDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEAS 142 (367)
T ss_dssp CHHHHHHHHHCCGGGGGGCHHHHHHTTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCB
T ss_pred CHHHHHHHHHhCccccchhhhHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCcceEecCCCCCCcCCcCCCC
Confidence 7999999998877632 224568899999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHhCCcEEEEeccccCCCcceecceecCceEEEEccCcCCCCCCCCCCCccccCc----eeeEEe
Q psy1924 79 GFCYVNDIVLGILELLKYHQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDMERVE----KFNVIE 154 (265)
Q Consensus 79 Gfc~~n~~a~a~~~~~~~~~rv~iiD~D~h~g~G~~~~f~~d~~vl~~S~h~~~~~~P~~g~~~~~g~g~----~~ni~~ 154 (265)
|||+|||+||||+++++..+||+|||||+|||||||++|++||+|+++|+|++++|||++|..+++|.+. .+|+|+
T Consensus 143 GFC~~NdvaiAa~~l~~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~fPgtg~~~e~G~g~g~g~~vNvPL 222 (367)
T 3max_A 143 GFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPM 222 (367)
T ss_dssp TTBCSCHHHHHHHHHTTTCSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSSCTTCCCCTTCCCCGGGTTCEEEEEE
T ss_pred CchhhhHHHHHHHHHHHcCCcEEEEecCCCCCchhhHHhcCCCCEEEEecccCCCCCCCCCCccccCCCCCCceEEEEec
Confidence 9999999999999999989999999999999999999999999999999999977999999999887653 589999
Q ss_pred ecccCCHHHHHHHHh-hCC--CccCCC-CCeeecCCCCccCcccccccccHhHHHHHHHHHhhhccceeeccCCCcCccc
Q psy1924 155 SRVMFTPDFFLQILI-VNP--FFLYPS-FPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAK 230 (265)
Q Consensus 155 ~~~~~~~d~~~~l~~-v~p--~~~~P~-i~v~aG~D~~~~d~l~~~a~lsaGg~l~a~~~l~~~~~~~a~~~~GGyhHA~ 230 (265)
+....+.+|...+.. +.| ..|+|+ +++|+|+|++..||+..+ ++|..++...++.+.+...+++++++|||+...
T Consensus 223 ~~g~~d~~y~~~~~~~~~~~~~~f~Pd~ivvsaG~D~~~~Dplg~~-~lt~~g~~~~~~~~~~~~~p~v~~~eGGY~~~~ 301 (367)
T 3max_A 223 RDGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCF-NLTVKGHAKCVEVVKTFNLPLLMLGGGGYTIRN 301 (367)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSCCC-CBCHHHHHHHHHHHHTTCCCEEEECCCCCSHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccCcCCCCCCCe-eeCHHHHHHHHHHHHhcCCCEEEEeCCCCChhH
Confidence 987666666655532 233 347898 678999999999999987 799999999888888777788899999999765
Q ss_pred CCCCceechhhHHHHH
Q psy1924 231 KSEASGFCYVNDIVLG 246 (265)
Q Consensus 231 ~~~a~gfC~~n~~ala 246 (265)
. +.+||+.+.++++
T Consensus 302 v--ar~wt~~ta~~~~ 315 (367)
T 3max_A 302 V--ARCWTYETAVALD 315 (367)
T ss_dssp H--HHHHHHHHHHHTT
T ss_pred H--HHHHHHHHHHHhh
Confidence 4 4589998888775
No 3
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=100.00 E-value=7e-58 Score=421.33 Aligned_cols=241 Identities=34% Similarity=0.578 Sum_probs=207.6
Q ss_pred CHHHHHHHHhhCCCC---CCCCCCcccCCCCCCChhHHHHHHHHhhHHHHHHHHHhccCCceEEecCCCCCCcccCCCCc
Q psy1924 3 TPDFFLQILIVNPFF---LYPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASG 79 (265)
Q Consensus 3 ~~~yv~~~~~~~p~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~a~~~~~g~HHa~~~~~~G 79 (265)
|++||+.|+..++.. ..+..+++++.|||+++++++++++++|++|.|++.+++|+.++|++||||+|||.+++++|
T Consensus 72 s~~Yi~~l~~~~~~~~~~~~~~~~~~lg~Dtp~~~~~~e~a~~aaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~G 151 (388)
T 3ew8_A 72 TDAYLQHLQKVSQEGDDDHPDSIEYGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASG 151 (388)
T ss_dssp CHHHHHHHHHHHHHC--------CCSCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBT
T ss_pred CHHHHHHHHHhcccccccchhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHcCCCceeeecCCcccceeecCCCC
Confidence 799999997754431 23366788999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHhCCcEEEEeccccCCCcceecceecCceEEEEccCcC-CCCCCCCCCCccccCc----eeeEEe
Q psy1924 80 FCYVNDIVLGILELLKYHQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYG-EYFPGTGDLRDMERVE----KFNVIE 154 (265)
Q Consensus 80 fc~~n~~a~a~~~~~~~~~rv~iiD~D~h~g~G~~~~f~~d~~vl~~S~h~~~-~~~P~~g~~~~~g~g~----~~ni~~ 154 (265)
||+|||+||||++|++..+||+|||||||||||||++|++||+|+++|+|+++ .|||++|..+++|.+. .+|+|+
T Consensus 152 FC~~NdiaiAa~~l~~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL 231 (388)
T 3ew8_A 152 FCYLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPI 231 (388)
T ss_dssp TBSSCHHHHHHHHHTTTCSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECCTTCTTCCCCTTCCCCGGGTTSEEEEEE
T ss_pred chhhhHHHHHHHHHHhcCCeEEEEecCCCCChhHHHHhccCCCEEEEecCCCCCCCCCCCCCcccccCCCCcceeeeccC
Confidence 99999999999999988899999999999999999999999999999999986 4999999999987654 589999
Q ss_pred ecccCCHHHHHHHHh-hCC--CccCCC-CCeeecCCCCccCcccccccccHhHHHHHHHHHhhhccceeeccCCCcCccc
Q psy1924 155 SRVMFTPDFFLQILI-VNP--FFLYPS-FPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAK 230 (265)
Q Consensus 155 ~~~~~~~d~~~~l~~-v~p--~~~~P~-i~v~aG~D~~~~d~l~~~a~lsaGg~l~a~~~l~~~~~~~a~~~~GGyhHA~ 230 (265)
+....+.+|...+.. +.| ..|+|+ +++|+|+|++..|||..+ +++..++.+.++.+++...++.++.+|||+...
T Consensus 232 ~~G~~d~~y~~~~~~~l~p~~~~F~PdlIvvsaG~Da~~~DpLg~l-~lt~~g~~~~~~~l~~~~~p~l~~~gGGY~~~~ 310 (388)
T 3ew8_A 232 QDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSF-NMTPVGIGKCLKYILQWQLATLILGGGGYNLAN 310 (388)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHCCSEEEEECCSTTBTTCTTCCC-CBCHHHHHHHHHHHHTTCCEEEEECCCCCSHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccCCCCCCCCCC-cCCHHHHHHHHHHHHhcCCCEEEEECCCCChhH
Confidence 887666667655532 233 347898 678999999999999987 799999999988888766677788899999776
Q ss_pred CCCCceechhhHHHHH
Q psy1924 231 KSEASGFCYVNDIVLG 246 (265)
Q Consensus 231 ~~~a~gfC~~n~~ala 246 (265)
. +.+|++++.++++
T Consensus 311 v--ar~w~~~~~~l~g 324 (388)
T 3ew8_A 311 T--ARCWTYLTGVILG 324 (388)
T ss_dssp H--HHHHHHHHHHHHT
T ss_pred H--HHHHHHHHHHHcC
Confidence 5 5599999888776
No 4
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=100.00 E-value=4.6e-56 Score=410.27 Aligned_cols=239 Identities=29% Similarity=0.403 Sum_probs=201.7
Q ss_pred CHHHHHHHHhhCCCC---CCCCCCccc-CCCCCCChhHHHHHHHHhhHHHHHHHHHhccCCceEEecCCCCCCcccCCCC
Q psy1924 3 TPDFFLQILIVNPFF---LYPSFPVNV-GEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEAS 78 (265)
Q Consensus 3 ~~~yv~~~~~~~p~~---~~~~~~~~~-~~d~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~a~~~~~g~HHa~~~~~~ 78 (265)
|++||+.|+...+.. ...++++++ +.|||+++++++++++++|++|.|++.+++++ +++++|||+|||.+++++
T Consensus 62 ~~~Yv~~l~~~~~~~~~~~~~~~~~~l~~~dtp~~~~~~~~a~~aaGg~l~aa~~v~~g~--~a~~ppGG~HHA~~~~a~ 139 (375)
T 1c3p_A 62 TEDYINTLMEAERCQCVPKGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGN--VAFNPAGGMHHAFKSRAN 139 (375)
T ss_dssp CHHHHHHHHHHHHHTSCCTTHHHHHCCSSSSSCSSTTTTHHHHHHHHHHHHHHHHHHTTC--EEEETTCCCTTCBTTBCB
T ss_pred CHHHHHHHHHhccccCCChHHhhccccCCCCcccChhHHHHHHHHhhHHHHHHHHHHcCC--ceeecCcccceeeeccCC
Confidence 799999997754421 112356667 68999999999999999999999999999988 899999999999999999
Q ss_pred cccccchHHHHHHHHHHhC-CcEEEEeccccCCCcceecceecCceEEEEccCcCC-CCCCCCCCCccc-c----Cceee
Q psy1924 79 GFCYVNDIVLGILELLKYH-QRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGE-YFPGTGDLRDME-R----VEKFN 151 (265)
Q Consensus 79 Gfc~~n~~a~a~~~~~~~~-~rv~iiD~D~h~g~G~~~~f~~d~~vl~~S~h~~~~-~~P~~g~~~~~g-~----g~~~n 151 (265)
|||+|||+||||++|+++. +||+|||||||||||||++|++||+|+++|+|+++. |||++|..+++| . +..+|
T Consensus 140 GFC~fNnvAiAa~~l~~~g~~RV~IvD~DvHHGnGtq~iF~~dp~Vl~~SiH~~~~~ffPgtG~~~e~G~~g~g~g~~vN 219 (375)
T 1c3p_A 140 GFCYINNPAVGIEYLRKKGFKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLN 219 (375)
T ss_dssp TTBSSCHHHHHHHHHHHTTCCCEEEEECSSSCCHHHHHHHTTCSSEEEEEEEECTTTSTTSSSCCTTCCCCGGGTTSEEE
T ss_pred CceeecHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHHhccCCCEEEEecccCCCCCCCCCCCccccCCcCCCCceEEE
Confidence 9999999999999999886 799999999999999999999999999999999976 799999988876 3 45689
Q ss_pred EEeecccCCHHHHHHHHh-hCC--CccCCC-CCeeecCCCCccCcccccccccHhHHHHHHHHHhhhccceeeccCCCcC
Q psy1924 152 VIESRVMFTPDFFLQILI-VNP--FFLYPS-FPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLH 227 (265)
Q Consensus 152 i~~~~~~~~~d~~~~l~~-v~p--~~~~P~-i~v~aG~D~~~~d~l~~~a~lsaGg~l~a~~~l~~~~~~~a~~~~GGyh 227 (265)
+|++....+.+|+..+.. +.| ..|+|+ +++|+|+|++..||+..+ ++|..++...++.+.+.+.+++++++|||+
T Consensus 220 vPL~~g~~D~~yl~a~~~~l~p~l~~F~PdlIvvsaG~Da~~~DpLg~l-~lt~~g~~~~~~~l~~~a~~vv~vleGGY~ 298 (375)
T 1c3p_A 220 IPLPKGLNDNEFLFALEKSLEIVKEVFEPEVYLLQLGTDPLLEDYLSKF-NLSNVAFLKAFNIVREVFGEGVYLGGGGYH 298 (375)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHHHCCCSEEEEECCSTTBTTCTTCSC-CBCHHHHHHHHHHHHHHHCSCEEECCCCCC
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccccCCCCCCCc-ccCHHHHHHHHHHHHHhccceEEEECCCCC
Confidence 999987666777655432 222 348898 678999999999999987 799999999999998887778899999998
Q ss_pred cccCCCCceechhhHHHHH
Q psy1924 228 HAKKSEASGFCYVNDIVLG 246 (265)
Q Consensus 228 HA~~~~a~gfC~~n~~ala 246 (265)
..... .+|+.+..+.++
T Consensus 299 ~~~l~--~~~~~~~~~l~g 315 (375)
T 1c3p_A 299 PYALA--RAWTLIWCELSG 315 (375)
T ss_dssp HHHHH--HHHHHHHHHHHT
T ss_pred hHHHH--HHHHHHHHHHcC
Confidence 75443 466666554443
No 5
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=100.00 E-value=1.3e-55 Score=400.79 Aligned_cols=208 Identities=19% Similarity=0.241 Sum_probs=183.1
Q ss_pred CCcccCCCCCCChhHHHHHHHHhhHHHHHHHHHhccC-CceEEecCCCCCCcccCCCCcccccchHHHHHHHHHHh-CCc
Q psy1924 22 FPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQA-SEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKY-HQR 99 (265)
Q Consensus 22 ~~~~~~~d~~~~~~~~~~~~~~~g~~~~a~~~~~~~~-~~~a~~~~~g~HHa~~~~~~Gfc~~n~~a~a~~~~~~~-~~r 99 (265)
+.+.++.|||+++++|+++++++|++|.|++.+++|+ +.++++|||| |||.+++++|||+|||+||||++|+++ .+|
T Consensus 110 g~~~~d~dt~~~~~~~~aa~~aaG~~l~a~~~v~~g~~~afal~rppG-HHA~~~~a~GFC~~NnvaiAa~~l~~~g~~R 188 (341)
T 3q9b_A 110 GYYCNAAETAISPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPPG-HHAGIDMFGGYCFINNAAVAAQRLLDKGAKK 188 (341)
T ss_dssp HHTBSBTTCCBCTTHHHHHHHHHHHHHHHHHHHHHTCSEEEECCSSCC-TTCBTTBBBTTBSSCHHHHHHHHHHHTTCSC
T ss_pred ceeccCCCCCcChhHHHHHHHHHHHHHHHHHHHHhCCCceEecCCCCC-CCCCCCCCCCccccCHHHHHHHHHHHcCCCe
Confidence 4578899999999999999999999999999999985 5688899999 999999999999999999999999998 599
Q ss_pred EEEEeccccCCCcceecceecCceEEEEccCcC-CCCCC-CCCCCccccC----ceeeEEeecccCCHHHHHHHHhhCC-
Q psy1924 100 VLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYG-EYFPG-TGDLRDMERV----EKFNVIESRVMFTPDFFLQILIVNP- 172 (265)
Q Consensus 100 v~iiD~D~h~g~G~~~~f~~d~~vl~~S~h~~~-~~~P~-~g~~~~~g~g----~~~ni~~~~~~~~~d~~~~l~~v~p- 172 (265)
|+|||||+|||||||++|++||+|+++|+|+++ .|||+ +|..+++|.+ ..+|+|++....+.+|+..+..+.+
T Consensus 189 V~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~yP~~tG~~~e~G~g~g~g~~vNvpL~~g~~d~~y~~~~~~~l~~ 268 (341)
T 3q9b_A 189 IAILDVDFHHGNGTQDIFYERGDVFFASLHGDPAEAFPHFLGYAEETGKGAGAGTTANYPMGRGTPYSVWGEALTDSLKR 268 (341)
T ss_dssp EEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGSTTCSSCCTTCCCCGGGTTCEEEEEECTTCBHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCcchhHHhcCCCCEEEEeccCCCccCCCCCCCcccccCCCCCCceeEeeecCCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999986 49998 8999888754 4689999987666677655543323
Q ss_pred -CccCCC-CCeeecCCCCccCcccccccccHhHHHHHHHHHhhhccceeeccCCCcCcccC
Q psy1924 173 -FFLYPS-FPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKK 231 (265)
Q Consensus 173 -~~~~P~-i~v~aG~D~~~~d~l~~~a~lsaGg~l~a~~~l~~~~~~~a~~~~GGyhHA~~ 231 (265)
..|+|+ +++|+|+|++..||+..+ +++..++.+.++.+.+.+.+++++++|||+....
T Consensus 269 l~~f~Pd~ivvsaG~D~~~~Dplg~~-~lt~~~~~~~~~~l~~~~~~~v~vleGGY~~~~l 328 (341)
T 3q9b_A 269 IAAFGAEAIVVSLGVDTFEQDPISFF-KLTSPDYITMGRTIAASGVPLLVVMEGGYGVPEI 328 (341)
T ss_dssp HHHHTCSCEEEEECCTTBTTCTTCCC-BBCTTHHHHHHHHHHTTSSCEEEEECCCCCCTTH
T ss_pred HHhhCCCEEEEeCCccccCCCCCCCc-cCCHHHHHHHHHHHHHhCCCEEEEECCCCChHHH
Confidence 237898 668999999999999987 7999999999999988878899999999996543
No 6
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=2.6e-55 Score=401.05 Aligned_cols=206 Identities=24% Similarity=0.333 Sum_probs=182.6
Q ss_pred CcccCCCCCCChhHHHHHHHHhhHHHHHHHHHhccC-CceEEecCCCCCCcccCCCCcccccchHHHHHHHHHHhCCcEE
Q psy1924 23 PVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQA-SEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVL 101 (265)
Q Consensus 23 ~~~~~~d~~~~~~~~~~~~~~~g~~~~a~~~~~~~~-~~~a~~~~~g~HHa~~~~~~Gfc~~n~~a~a~~~~~~~~~rv~ 101 (265)
.+.+|.|||+++++|+++++++|++|.|++.+++|+ +.++++|||| |||.+++++|||+|||+||||++|+++.+||+
T Consensus 130 ~~~~d~Dtpv~~~~~~aa~~aaG~~l~aa~~v~~g~~~afal~rPpG-HHA~~~~a~GFC~fNnvAiAa~~l~~~~~RV~ 208 (362)
T 3men_A 130 RHLADGSCPVGEHTWRAAYWSAQSALAAAAAVRDGAPAAYALCRPPG-HHARVDAAGGFCYLNNAAIAAQALRARHARVA 208 (362)
T ss_dssp HHBCBTTCCBCTTHHHHHHHHHHHHHHHHHHHHTTCSEEEECCSSCC-TTCBTTBBBTTBSSCHHHHHHHHHTTTCSCEE
T ss_pred ccccCCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCC-CCCCCCCCCCccccCHHHHHHHHHHHcCCeEE
Confidence 467889999999999999999999999999999985 5678889999 99999999999999999999999999999999
Q ss_pred EEeccccCCCcceecceecCceEEEEccCcC-CCCCC-CCCCCccccC----ceeeEEeecccCCHHHHHHHHhhCC--C
Q psy1924 102 YIDVDVHHGDGVEEAFYTTDRVMTVSFHKYG-EYFPG-TGDLRDMERV----EKFNVIESRVMFTPDFFLQILIVNP--F 173 (265)
Q Consensus 102 iiD~D~h~g~G~~~~f~~d~~vl~~S~h~~~-~~~P~-~g~~~~~g~g----~~~ni~~~~~~~~~d~~~~l~~v~p--~ 173 (265)
|||||+|||||||++|++||+|+++|+|+++ .|||+ +|..+++|.+ ..+|+|++....+.+|+..+..+.+ .
T Consensus 209 ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~yP~~tG~~~e~G~g~g~g~~vNvPL~~g~~d~~yl~~~~~~l~~l~ 288 (362)
T 3men_A 209 VLDTDMHHGQGIQEIFYARRDVLYVSIHGDPTNFYPAVAGFDDERGAGEGLGYNVNLPMPHGSSEAAFFERVDDALRELR 288 (362)
T ss_dssp EEECSSSCCHHHHHHTTTCSSEEEEEEEECCTTSTTCSSCCTTCCCSGGGTTSEEEEEECTTBCHHHHHHHHHHHHHHHH
T ss_pred EEeCcCCCchhHhHHhcCCCCEEEEEecCCCccCCCCCCCccccccCCCCCceeEeeccCCCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999986 49998 8999888754 4689999987666677655543333 2
Q ss_pred ccCCC-CCeeecCCCCccCcccccccccHhHHHHHHHHHhhhccceeeccCCCcCccc
Q psy1924 174 FLYPS-FPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAK 230 (265)
Q Consensus 174 ~~~P~-i~v~aG~D~~~~d~l~~~a~lsaGg~l~a~~~l~~~~~~~a~~~~GGyhHA~ 230 (265)
.|+|+ +++|+|+|++..||+..+ +++..++...++.+.+.+.+++++++|||+...
T Consensus 289 ~f~PdlIvvsaG~Da~~~Dplg~l-~lt~~~~~~~~~~l~~~~~~~v~vleGGY~~~~ 345 (362)
T 3men_A 289 RFAPDALVLSLGFDVYRDDPQSQV-AVTTDGFGRLGHLIGALRLPTVIVQEGGYHIES 345 (362)
T ss_dssp HHCCSEEEEEECSTTBTTCTTCCB-CBCHHHHHHHHHHHHTTCCCEEEEECCCCCHHH
T ss_pred hcCCCEEEEECcccCcCCCCCCCc-cCCHHHHHHHHHHHHhhCCCEEEEECCCCCHHH
Confidence 37898 678999999999999987 799999999999998887889999999999643
No 7
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=100.00 E-value=1.3e-54 Score=399.92 Aligned_cols=231 Identities=23% Similarity=0.249 Sum_probs=194.7
Q ss_pred CHHHHHHHHhhCC-CCCCCCCCcccCC-CCCCChhHHHHHHHHhhHHHHHHHHHhccCC--ceEEecCCCCCCcccCCCC
Q psy1924 3 TPDFFLQILIVNP-FFLYPSFPVNVGE-DCPVFDGLYEFCQLSAGGSVAAAVKLNKQAS--EICINWGGGLHHAKKSEAS 78 (265)
Q Consensus 3 ~~~yv~~~~~~~p-~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~--~~a~~~~~g~HHa~~~~~~ 78 (265)
|++||++|+..++ + +.+.++. |||+++++++++++++|+++.|++.+++|+. .++++|||| |||.+++++
T Consensus 77 ~~~Yv~~l~~~~~~~-----~~~~l~~~dtp~~~~~~~~a~~aaG~~l~aa~~v~~g~~~~afa~~rppG-HHA~~~~a~ 150 (369)
T 1zz1_A 77 SAAHLENMKRVSNLP-----TGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPG-HHAPHNAAM 150 (369)
T ss_dssp CHHHHHHHHHHHHST-----TCEECSSSSCEECTTTHHHHHHHHHHHHHHHHHHHTTSCSEEEECCSSCC-TTCCTTCCB
T ss_pred cHHHHHHHHHhCccc-----cceecCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEecCCc-cCcCCCCCC
Confidence 7999999987665 3 3455788 9999999999999999999999999999974 457889999 999999999
Q ss_pred cccccchHHHHHHHHHHhC--CcEEEEeccccCCCcceecceecCceEEEEccCcCCCCC-CCCCCCccccC----ceee
Q psy1924 79 GFCYVNDIVLGILELLKYH--QRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFP-GTGDLRDMERV----EKFN 151 (265)
Q Consensus 79 Gfc~~n~~a~a~~~~~~~~--~rv~iiD~D~h~g~G~~~~f~~d~~vl~~S~h~~~~~~P-~~g~~~~~g~g----~~~n 151 (265)
|||+|||+||||++|++++ +||+|||||||||||||++|++||+|+++|+|+++ ||| ++|..+++|.+ ..+|
T Consensus 151 GFC~fNnvAiAa~~l~~~~g~~RV~IvD~DvHHGnGTq~iF~~d~~Vl~~SiH~~~-~yP~~tG~~~e~G~g~g~g~~vN 229 (369)
T 1zz1_A 151 GFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHL-CFPPDSGYSTERGAGNGHGYNIN 229 (369)
T ss_dssp TTBSSCHHHHHHHHHHHTSCCSCEEEEECSSSCCHHHHHHTTTCTTEEEEEEEETT-SSSTTCCCTTCCCCGGGTTCEEE
T ss_pred CchHhhHHHHHHHHHHHhcCCCeEEEEecCCCCchhhhHHhcCCCCEEEEeccCCC-CCCCCCCcccccCCCCCCceEEe
Confidence 9999999999999999873 89999999999999999999999999999999986 999 99999888754 5689
Q ss_pred EEeecccCCHHHHHHHHh-hCC--CccCCC-CCeeecCCCCccCcccccccccHhHHHHHHHHHhhhc-----cceeecc
Q psy1924 152 VIESRVMFTPDFFLQILI-VNP--FFLYPS-FPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQA-----SEICINW 222 (265)
Q Consensus 152 i~~~~~~~~~d~~~~l~~-v~p--~~~~P~-i~v~aG~D~~~~d~l~~~a~lsaGg~l~a~~~l~~~~-----~~~a~~~ 222 (265)
+|++....+.+|+..+.. +.| ..|+|+ +++|+|+|++..||+..+ ++|..++...++.+.+.+ .++++++
T Consensus 230 vPL~~g~~d~~yl~~~~~~v~p~l~~f~PdlIvvsaG~Da~~~DpLg~l-~lt~~g~~~~~~~l~~~a~~~~~g~vv~vl 308 (369)
T 1zz1_A 230 VPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARM-MVTADGFRQMARRTIDCAADICDGRIVFVQ 308 (369)
T ss_dssp EEECTTCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCTTCCC-BBCHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred eecCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccCCCCCCCCCc-ccCHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 999987766777665543 333 237898 678999999999999987 799999999988887554 4588899
Q ss_pred CCCcCcccCCCCceechhhHH
Q psy1924 223 GGGLHHAKKSEASGFCYVNDI 243 (265)
Q Consensus 223 ~GGyhHA~~~~a~gfC~~n~~ 243 (265)
+|||+.... +.+|+.+...
T Consensus 309 eGGY~~~~l--~~~~~~~~~~ 327 (369)
T 1zz1_A 309 EGGYSPHYL--PFCGLAVIEE 327 (369)
T ss_dssp CCCCCTTTH--HHHHHHHHHH
T ss_pred CCCCCccHH--HHHHHHHHHH
Confidence 999996432 3344444433
No 8
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=100.00 E-value=5.3e-50 Score=371.16 Aligned_cols=206 Identities=26% Similarity=0.382 Sum_probs=174.7
Q ss_pred cccCCCCCCC-hhHHHHHHHHhhHHHHHHHHHhccCC--ceEEecCCCCCCcccCCCCcccccchHHHHHHHHHHh--CC
Q psy1924 24 VNVGEDCPVF-DGLYEFCQLSAGGSVAAAVKLNKQAS--EICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKY--HQ 98 (265)
Q Consensus 24 ~~~~~d~~~~-~~~~~~~~~~~g~~~~a~~~~~~~~~--~~a~~~~~g~HHa~~~~~~Gfc~~n~~a~a~~~~~~~--~~ 98 (265)
.++|.|++++ +.+++++++++|+++.|++.+++|+. +++++|||| |||.+++++|||+|||+||||++++++ .+
T Consensus 139 ~~~D~Dt~~~~~~s~~aa~~aaG~~~~a~~~v~~g~~~~afa~~rPpG-HHA~~~~a~GFC~fNnvAiAa~~l~~~~~~~ 217 (421)
T 2pqp_A 139 VGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPG-HHADHSTAMGFCFFNSVAIACRQLQQQSKAS 217 (421)
T ss_dssp EESSSSCEECTTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCSSCC-TTCBTTBCBTTBSSCHHHHHHHHHHHHSTTC
T ss_pred cCCCCCcccCCccHHHHHHHHHhHHHHHHHHHHcCccccceeeCCCCC-CCCCCCCCCcchhhCHHHHHHHHHHHhcCCC
Confidence 4577899988 59999999999999999999999875 467789999 999999999999999999999999987 38
Q ss_pred cEEEEeccccCCCcceecceecCceEEEEccCcC--CCCCCCCCCCccccC----ceeeEEeecc----cCCHHHHHHHH
Q psy1924 99 RVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYG--EYFPGTGDLRDMERV----EKFNVIESRV----MFTPDFFLQIL 168 (265)
Q Consensus 99 rv~iiD~D~h~g~G~~~~f~~d~~vl~~S~h~~~--~~~P~~g~~~~~g~g----~~~ni~~~~~----~~~~d~~~~l~ 168 (265)
||+|||||+|||||||++|++||+|+++|+|+++ +|||++|..+++|.+ .++|+|++.+ ..+.+|+..+.
T Consensus 218 RV~ivD~DvHHGnGtq~iF~~dp~Vl~~S~H~~~~g~~yPgtG~~~e~G~g~g~g~~vNvPl~~gl~~g~~d~~yl~~~~ 297 (421)
T 2pqp_A 218 KILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFR 297 (421)
T ss_dssp CEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGTSTTCCCCTTCCCCGGGTTCEEEEEECSCSSSCCBHHHHHHHHH
T ss_pred eEEEEecCCCCChhHHHHhcCCCCEEEEecccCCCCCCCCCCCChhhccCCCCccceeccccCCCCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999975 599999999988754 3579998754 23455655553
Q ss_pred h-hCC--CccCCC-CCeeecCCCCccC--cccccccccHhHHHHHHHHHhhhc-cceeeccCCCcCcccC
Q psy1924 169 I-VNP--FFLYPS-FPVNVGEDCPVFD--GLYEFCQLSAGGSVAAAVKLNKQA-SEICINWGGGLHHAKK 231 (265)
Q Consensus 169 ~-v~p--~~~~P~-i~v~aG~D~~~~d--~l~~~a~lsaGg~l~a~~~l~~~~-~~~a~~~~GGyhHA~~ 231 (265)
. +.| ..|+|+ +++++|+|++..| ||..+ +++..++..+++.+.+.+ .+++.+++|||+....
T Consensus 298 ~~l~p~~~~F~PdlIvvsaG~Da~~gD~dpLg~~-~lt~~~y~~~~~~l~~~a~grvv~vlEGGY~l~~l 366 (421)
T 2pqp_A 298 IVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGY-HVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAI 366 (421)
T ss_dssp HTHHHHHHHHCCSEEEEEECCTTBTTCCGGGCCC-BBCHHHHHHHHHHHTTSGGGCEEEEECSCCCHHHH
T ss_pred HHHHHHHHHhCCCEEEEeCCcccccccccccCCc-eeCHHHHHHHHHHHHHHcCCCEEEEECCCCChHHH
Confidence 2 333 347898 6789999999986 89887 789999999998888764 5788999999996543
No 9
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=100.00 E-value=7.7e-49 Score=366.40 Aligned_cols=220 Identities=25% Similarity=0.333 Sum_probs=179.7
Q ss_pred CCcccCCCCCCCh-hHHHHHHHHhhHHHHHHHHHhccCCce--EEecCCCCCCcccCCCCcccccchHHHHHHHHHHhC-
Q psy1924 22 FPVNVGEDCPVFD-GLYEFCQLSAGGSVAAAVKLNKQASEI--CINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYH- 97 (265)
Q Consensus 22 ~~~~~~~d~~~~~-~~~~~~~~~~g~~~~a~~~~~~~~~~~--a~~~~~g~HHa~~~~~~Gfc~~n~~a~a~~~~~~~~- 97 (265)
..+.++.|+++++ .+++++++++|+++.|++.+++|+..+ +++|||| |||.+++++|||+|||+||||+++++++
T Consensus 108 ~~~~~d~dt~~~~~~s~~aA~laaG~~l~a~~~v~~g~~~~afa~vrppG-HHA~~~~a~GFC~~Nnvaiaa~~~~~~~~ 186 (413)
T 2vqm_A 108 GGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPG-HHAEESTPMGFCYFNSVAVAAKLLQQRLS 186 (413)
T ss_dssp SCEEECTTSTHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCCSCC-TTCBTTBCBTTBSSCHHHHHHHHHHHHSC
T ss_pred CCcCccCCccccchhHHHHHHHHHHHHHHHHHHHhcCCccceeeeccccc-ccCcCCCCCCccccchHHHHHHHHHHhcC
Confidence 4556788888775 799999999999999999999998665 5568888 9999999999999999999999999874
Q ss_pred -CcEEEEeccccCCCcceecceecCceEEEEccCcC--CCCCCCCCCCccccCc----eeeEEeecc----cCCHHHHHH
Q psy1924 98 -QRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYG--EYFPGTGDLRDMERVE----KFNVIESRV----MFTPDFFLQ 166 (265)
Q Consensus 98 -~rv~iiD~D~h~g~G~~~~f~~d~~vl~~S~h~~~--~~~P~~g~~~~~g~g~----~~ni~~~~~----~~~~d~~~~ 166 (265)
+||+|||||||||||||++|++||+|+++|+|+++ +|||++|..+++|.+. ++|+|++.+ ..+.+|+..
T Consensus 187 ~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~f~pgtG~~~e~G~g~g~g~~~n~pl~~g~~~~~~D~~y~~~ 266 (413)
T 2vqm_A 187 VSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAA 266 (413)
T ss_dssp CSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGCSTTCCCCTTCCCSGGGTTCEEEEEECSCSSSCCCHHHHHHH
T ss_pred CCeEEEEecccCCCccHHHHHhcCcccccccchhccCCCCCCCCCCHHHcCCCcccccccccccccccCCCCCHHHHHHH
Confidence 89999999999999999999999999999999975 4999999999987654 568888754 234556554
Q ss_pred HHh-hCC--CccCCC-CCeeecCCCCcc--CcccccccccHhHHHHHHHHHhhhc-cceeeccCCCcCcccCCCCceech
Q psy1924 167 ILI-VNP--FFLYPS-FPVNVGEDCPVF--DGLYEFCQLSAGGSVAAAVKLNKQA-SEICINWGGGLHHAKKSEASGFCY 239 (265)
Q Consensus 167 l~~-v~p--~~~~P~-i~v~aG~D~~~~--d~l~~~a~lsaGg~l~a~~~l~~~~-~~~a~~~~GGyhHA~~~~a~gfC~ 239 (265)
+.. +.| ..|+|+ +++|+|+|++.+ |+++.+ +++..++...++.+.+.+ .+++++++|||+.... +.+|+.
T Consensus 267 ~~~~v~p~~~~f~PdlivvsaG~Da~~~d~D~lg~~-~lt~~~~~~~~~~l~~~a~~~~v~vleGGY~~~~l--~~~~~~ 343 (413)
T 2vqm_A 267 FRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGY-NLSARCFGYLTKQLMGLAGGRIVLALEGGHDLTAI--CDASEA 343 (413)
T ss_dssp HHHTHHHHHHHHCCSEEEEEECCTTBSSCTTTTCCC-CBCHHHHHHHHHHHHTSGGGCEEEEECCCCCHHHH--HHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEeCChhhcCCCCCCCCCc-ccCHHHHHHHHHHHHHhcCCCEEEEeCcCCChHHH--HHHHHH
Confidence 432 233 237898 678999999998 668886 799999999999888764 5788899999997544 335555
Q ss_pred hhHHHH
Q psy1924 240 VNDIVL 245 (265)
Q Consensus 240 ~n~~al 245 (265)
+....+
T Consensus 344 ~~~~l~ 349 (413)
T 2vqm_A 344 CVSALL 349 (413)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 544443
No 10
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=99.86 E-value=2.1e-22 Score=185.42 Aligned_cols=108 Identities=39% Similarity=0.739 Sum_probs=91.9
Q ss_pred cCCHHHHHHHHhhCCCc--cCCC-CCeeecCCCCccCcccccccccHhHHHHHHHHHhhhccceeeccCCCcCcccCCCC
Q psy1924 158 MFTPDFFLQILIVNPFF--LYPS-FPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEA 234 (265)
Q Consensus 158 ~~~~d~~~~l~~v~p~~--~~P~-i~v~aG~D~~~~d~l~~~a~lsaGg~l~a~~~l~~~~~~~a~~~~GGyhHA~~~~a 234 (265)
.|+++|+..+....+.. ..|+ ....+|.||++++++++.+++++|+++.+++.+++....++++++||+|||.++++
T Consensus 70 vHs~~Yi~~l~~~~~~~~~~~~~~~~~~lg~Dtp~~~~~~e~a~~aaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a 149 (388)
T 3ew8_A 70 FHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEA 149 (388)
T ss_dssp TSCHHHHHHHHHHHHHC--------CCSCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBC
T ss_pred hCCHHHHHHHHHhcccccccchhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHcCCCceeeecCCcccceeecCC
Confidence 58999998886433211 1122 34567889999999999999999999999999987766789999999999999999
Q ss_pred ceechhhHHHHHHHHHhhcCCeEEEEeccCC
Q psy1924 235 SGFCYVNDIVLGILELLKYHQRVLYIDVDVH 265 (265)
Q Consensus 235 ~gfC~~n~~ala~~~~~~~~~~v~i~D~D~H 265 (265)
+|||+|||+|||++++++..+||+|||||||
T Consensus 150 ~GFC~~NdiaiAa~~l~~~~~RV~ivD~DvH 180 (388)
T 3ew8_A 150 SGFCYLNDAVLGILRLRRKFERILYVDLDLH 180 (388)
T ss_dssp BTTBSSCHHHHHHHHHTTTCSCEEEEECSSS
T ss_pred CCchhhhHHHHHHHHHHhcCCeEEEEecCCC
Confidence 9999999999999999988899999999999
No 11
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=99.86 E-value=3.8e-22 Score=182.76 Aligned_cols=108 Identities=66% Similarity=1.140 Sum_probs=92.3
Q ss_pred cCCHHHHHHHHhhCCCccC---CC-CCeeecCCCCccCcccccccccHhHHHHHHHHHhhhccceeeccCCCcCcccCCC
Q psy1924 158 MFTPDFFLQILIVNPFFLY---PS-FPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSE 233 (265)
Q Consensus 158 ~~~~d~~~~l~~v~p~~~~---P~-i~v~aG~D~~~~d~l~~~a~lsaGg~l~a~~~l~~~~~~~a~~~~GGyhHA~~~~ 233 (265)
.|+++|+..+....+.... +. ....+|.||++++++++.+++++|+++.+++.+.+....++++++||+|||.+++
T Consensus 61 vHs~~Yi~~l~~~~~~~~~~~~~~~~~~~l~~Dtp~~~~~~e~a~~aaGgsl~aa~~v~~~~~~~Ai~~pgG~HHA~~~~ 140 (367)
T 3max_A 61 YHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSE 140 (367)
T ss_dssp TSCHHHHHHHHHCCGGGGGGCHHHHHHTTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTB
T ss_pred hCCHHHHHHHHHhCccccchhhhHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCcceEecCCCCCCcCCcCC
Confidence 5899999888755433110 00 0145788999999999999999999999999887666789999999999999999
Q ss_pred CceechhhHHHHHHHHHhhcCCeEEEEeccCC
Q psy1924 234 ASGFCYVNDIVLGILELLKYHQRVLYIDVDVH 265 (265)
Q Consensus 234 a~gfC~~n~~ala~~~~~~~~~~v~i~D~D~H 265 (265)
++|||+|||+|||++++++..+||+|||||||
T Consensus 141 a~GFC~~NdvaiAa~~l~~~~~RV~ivD~DvH 172 (367)
T 3max_A 141 ASGFCYVNDIVLAILELLKYHQRVLYIDIDIH 172 (367)
T ss_dssp CBTTBCSCHHHHHHHHHTTTCSCEEEEECSSS
T ss_pred CCCchhhhHHHHHHHHHHHcCCcEEEEecCCC
Confidence 99999999999999999998899999999999
No 12
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=99.85 E-value=5.6e-22 Score=182.44 Aligned_cols=108 Identities=58% Similarity=1.042 Sum_probs=92.1
Q ss_pred cCCHHHHHHHHhhCCCccC---CC-CCeeecCCCCccCcccccccccHhHHHHHHHHHhhhccceeeccCCCcCcccCCC
Q psy1924 158 MFTPDFFLQILIVNPFFLY---PS-FPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSE 233 (265)
Q Consensus 158 ~~~~d~~~~l~~v~p~~~~---P~-i~v~aG~D~~~~d~l~~~a~lsaGg~l~a~~~l~~~~~~~a~~~~GGyhHA~~~~ 233 (265)
.|+++|++.+....+.... .. -...+|.||++++++++.+++++|+++.+++.+.......+++++||+|||.+++
T Consensus 61 vHs~~Yi~~l~~~~~~~~~~~~~~~~~~~l~~Dtpv~~~~~e~a~~aaGgtl~Aa~~v~~g~~~~A~~~~gG~HHA~~~~ 140 (376)
T 4a69_A 61 FHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFE 140 (376)
T ss_dssp TSCHHHHHHHHHCCTTTGGGGHHHHHHHTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTB
T ss_pred hCCHHHHHHHHHhCcccchhhhhhhceeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCcceeeeCCCCCCcCCcCC
Confidence 5899999888765443110 00 0245789999999999999999999999999987766678899999999999999
Q ss_pred CceechhhHHHHHHHHHhhcCCeEEEEeccCC
Q psy1924 234 ASGFCYVNDIVLGILELLKYHQRVLYIDVDVH 265 (265)
Q Consensus 234 a~gfC~~n~~ala~~~~~~~~~~v~i~D~D~H 265 (265)
++|||+|||+|||+++++++.+||+|||||||
T Consensus 141 a~GFC~~NdvAiAa~~l~~~~~RV~ivD~DvH 172 (376)
T 4a69_A 141 ASGFCYVNDIVIGILELLKYHPRVLYIDIDIH 172 (376)
T ss_dssp CBTTBSSCHHHHHHHHHTTTCSCEEEEECSSS
T ss_pred CCcchhhhHHHHHHHHHHHhCCcEEEEeccCC
Confidence 99999999999999999998899999999999
No 13
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=99.83 E-value=5.4e-21 Score=173.60 Aligned_cols=84 Identities=20% Similarity=0.366 Sum_probs=78.0
Q ss_pred eeecCCCCccCcccccccccHhHHHHHHHHHhhhc-cceeeccCCCcCcccCCCCceechhhHHHHHHHHHhhc-CCeEE
Q psy1924 181 VNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQA-SEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKY-HQRVL 258 (265)
Q Consensus 181 v~aG~D~~~~d~l~~~a~lsaGg~l~a~~~l~~~~-~~~a~~~~GGyhHA~~~~a~gfC~~n~~ala~~~~~~~-~~~v~ 258 (265)
..++.||++++++++.+++++|+.+.+++.+++.. ..+|+++||| |||.+++++|||+|||+|||+++++++ .+||+
T Consensus 112 ~~~d~dt~~~~~~~~aa~~aaG~~l~a~~~v~~g~~~afal~rppG-HHA~~~~a~GFC~~NnvaiAa~~l~~~g~~RV~ 190 (341)
T 3q9b_A 112 YCNAAETAISPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPPG-HHAGIDMFGGYCFINNAAVAAQRLLDKGAKKIA 190 (341)
T ss_dssp TBSBTTCCBCTTHHHHHHHHHHHHHHHHHHHHHTCSEEEECCSSCC-TTCBTTBBBTTBSSCHHHHHHHHHHHTTCSCEE
T ss_pred eccCCCCCcChhHHHHHHHHHHHHHHHHHHHHhCCCceEecCCCCC-CCCCCCCCCCccccCHHHHHHHHHHHcCCCeEE
Confidence 35788999999999999999999999999988653 5799999999 999999999999999999999999998 48999
Q ss_pred EEeccCC
Q psy1924 259 YIDVDVH 265 (265)
Q Consensus 259 i~D~D~H 265 (265)
|||||||
T Consensus 191 ivD~DvH 197 (341)
T 3q9b_A 191 ILDVDFH 197 (341)
T ss_dssp EEECSSS
T ss_pred EEecCCC
Confidence 9999999
No 14
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=99.83 E-value=3.2e-21 Score=177.50 Aligned_cols=103 Identities=24% Similarity=0.314 Sum_probs=88.5
Q ss_pred cCCHHHHHHHHhhCCCccCCCCCeeecC-CCCccCcccccccccHhHHHHHHHHHhhhc--cceeeccCCCcCcccCCCC
Q psy1924 158 MFTPDFFLQILIVNPFFLYPSFPVNVGE-DCPVFDGLYEFCQLSAGGSVAAAVKLNKQA--SEICINWGGGLHHAKKSEA 234 (265)
Q Consensus 158 ~~~~d~~~~l~~v~p~~~~P~i~v~aG~-D~~~~d~l~~~a~lsaGg~l~a~~~l~~~~--~~~a~~~~GGyhHA~~~~a 234 (265)
.|+++|+..+....+. .-...+|. ||++++++++.+++++|+++.+++.+++.. ..+|++++|| |||.++++
T Consensus 75 vH~~~Yv~~l~~~~~~----~~~~~l~~~dtp~~~~~~~~a~~aaG~~l~aa~~v~~g~~~~afa~~rppG-HHA~~~~a 149 (369)
T 1zz1_A 75 AHSAAHLENMKRVSNL----PTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPG-HHAPHNAA 149 (369)
T ss_dssp TSCHHHHHHHHHHHHS----TTCEECSSSSCEECTTTHHHHHHHHHHHHHHHHHHHTTSCSEEEECCSSCC-TTCCTTCC
T ss_pred hccHHHHHHHHHhCcc----ccceecCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEecCCc-cCcCCCCC
Confidence 5888998888654320 11234788 999999999999999999999999988654 5689999999 99999999
Q ss_pred ceechhhHHHHHHHHHhhcC--CeEEEEeccCC
Q psy1924 235 SGFCYVNDIVLGILELLKYH--QRVLYIDVDVH 265 (265)
Q Consensus 235 ~gfC~~n~~ala~~~~~~~~--~~v~i~D~D~H 265 (265)
+|||+|||+|||++++++++ +||+|||||||
T Consensus 150 ~GFC~fNnvAiAa~~l~~~~g~~RV~IvD~DvH 182 (369)
T 1zz1_A 150 MGFCIFNNTSVAAGYARAVLGMERVAILDWDVH 182 (369)
T ss_dssp BTTBSSCHHHHHHHHHHHTSCCSCEEEEECSSS
T ss_pred CCchHhhHHHHHHHHHHHhcCCCeEEEEecCCC
Confidence 99999999999999999874 89999999999
No 15
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=99.82 E-value=8.5e-21 Score=173.29 Aligned_cols=84 Identities=30% Similarity=0.487 Sum_probs=78.5
Q ss_pred eeecCCCCccCcccccccccHhHHHHHHHHHhhh-ccceeeccCCCcCcccCCCCceechhhHHHHHHHHHhhcCCeEEE
Q psy1924 181 VNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQ-ASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLY 259 (265)
Q Consensus 181 v~aG~D~~~~d~l~~~a~lsaGg~l~a~~~l~~~-~~~~a~~~~GGyhHA~~~~a~gfC~~n~~ala~~~~~~~~~~v~i 259 (265)
..++.||++++++++.+++++|+.+.+++.+.+. ...+|+++||| |||.+++++|||+|||+|||+++++++.+||+|
T Consensus 131 ~~~d~Dtpv~~~~~~aa~~aaG~~l~aa~~v~~g~~~afal~rPpG-HHA~~~~a~GFC~fNnvAiAa~~l~~~~~RV~i 209 (362)
T 3men_A 131 HLADGSCPVGEHTWRAAYWSAQSALAAAAAVRDGAPAAYALCRPPG-HHARVDAAGGFCYLNNAAIAAQALRARHARVAV 209 (362)
T ss_dssp HBCBTTCCBCTTHHHHHHHHHHHHHHHHHHHHTTCSEEEECCSSCC-TTCBTTBBBTTBSSCHHHHHHHHHTTTCSCEEE
T ss_pred cccCCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCC-CCCCCCCCCCccccCHHHHHHHHHHHcCCeEEE
Confidence 3568899999999999999999999999998865 36799999999 999999999999999999999999998999999
Q ss_pred EeccCC
Q psy1924 260 IDVDVH 265 (265)
Q Consensus 260 ~D~D~H 265 (265)
||||||
T Consensus 210 vD~DvH 215 (362)
T 3men_A 210 LDTDMH 215 (362)
T ss_dssp EECSSS
T ss_pred EeCcCC
Confidence 999999
No 16
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=99.80 E-value=3e-20 Score=171.30 Aligned_cols=106 Identities=34% Similarity=0.537 Sum_probs=87.5
Q ss_pred cCCHHHHHHHHhhCCCcc-CCC--CCeee-cCCCCccCcccccccccHhHHHHHHHHHhhhccceeeccCCCcCcccCCC
Q psy1924 158 MFTPDFFLQILIVNPFFL-YPS--FPVNV-GEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSE 233 (265)
Q Consensus 158 ~~~~d~~~~l~~v~p~~~-~P~--i~v~a-G~D~~~~d~l~~~a~lsaGg~l~a~~~l~~~~~~~a~~~~GGyhHA~~~~ 233 (265)
.|+++|+..+....+... .+. ....+ +.||++++++++.+++++|+++.+++.+++.. .++.++||+|||.+++
T Consensus 60 vH~~~Yv~~l~~~~~~~~~~~~~~~~~~l~~~dtp~~~~~~~~a~~aaGg~l~aa~~v~~g~--~a~~ppGG~HHA~~~~ 137 (375)
T 1c3p_A 60 FHTEDYINTLMEAERCQCVPKGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGN--VAFNPAGGMHHAFKSR 137 (375)
T ss_dssp TSCHHHHHHHHHHHHHTSCCTTHHHHHCCSSSSSCSSTTTTHHHHHHHHHHHHHHHHHHTTC--EEEETTCCCTTCBTTB
T ss_pred hCCHHHHHHHHHhccccCCChHHhhccccCCCCcccChhHHHHHHHHhhHHHHHHHHHHcCC--ceeecCcccceeeecc
Confidence 589999988864322110 111 11234 68999999999999999999999999988754 6788899999999999
Q ss_pred CceechhhHHHHHHHHHhhcC-CeEEEEeccCC
Q psy1924 234 ASGFCYVNDIVLGILELLKYH-QRVLYIDVDVH 265 (265)
Q Consensus 234 a~gfC~~n~~ala~~~~~~~~-~~v~i~D~D~H 265 (265)
++|||+|||+|||++++++++ +||+|||||||
T Consensus 138 a~GFC~fNnvAiAa~~l~~~g~~RV~IvD~DvH 170 (375)
T 1c3p_A 138 ANGFCYINNPAVGIEYLRKKGFKRILYIDLDAH 170 (375)
T ss_dssp CBTTBSSCHHHHHHHHHHHTTCCCEEEEECSSS
T ss_pred CCCceeecHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 999999999999999999887 69999999999
No 17
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=99.72 E-value=2.3e-18 Score=159.64 Aligned_cols=83 Identities=27% Similarity=0.430 Sum_probs=72.3
Q ss_pred eecCCCCccC-cccccccccHhHHHHHHHHHhhhc--cceeeccCCCcCcccCCCCceechhhHHHHHHHHHhhcC--Ce
Q psy1924 182 NVGEDCPVFD-GLYEFCQLSAGGSVAAAVKLNKQA--SEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYH--QR 256 (265)
Q Consensus 182 ~aG~D~~~~d-~l~~~a~lsaGg~l~a~~~l~~~~--~~~a~~~~GGyhHA~~~~a~gfC~~n~~ala~~~~~~~~--~~ 256 (265)
..+.|+.++. ..++.+++++|+.+.+++.+.+.. +.+|++++|| |||.+++++|||+|||+|||++++++++ +|
T Consensus 140 ~~D~Dt~~~~~~s~~aa~~aaG~~~~a~~~v~~g~~~~afa~~rPpG-HHA~~~~a~GFC~fNnvAiAa~~l~~~~~~~R 218 (421)
T 2pqp_A 140 GVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPG-HHADHSTAMGFCFFNSVAIACRQLQQQSKASK 218 (421)
T ss_dssp ESSSSCEECTTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCSSCC-TTCBTTBCBTTBSSCHHHHHHHHHHHHSTTCC
T ss_pred CCCCCcccCCccHHHHHHHHHhHHHHHHHHHHcCccccceeeCCCCC-CCCCCCCCCcchhhCHHHHHHHHHHHhcCCCe
Confidence 4456777764 556778999999999999987543 5799999999 9999999999999999999999999864 89
Q ss_pred EEEEeccCC
Q psy1924 257 VLYIDVDVH 265 (265)
Q Consensus 257 v~i~D~D~H 265 (265)
|+|||||||
T Consensus 219 V~ivD~DvH 227 (421)
T 2pqp_A 219 ILIVDWDVH 227 (421)
T ss_dssp EEEEECSSS
T ss_pred EEEEecCCC
Confidence 999999999
No 18
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=99.70 E-value=7.3e-18 Score=157.26 Aligned_cols=84 Identities=27% Similarity=0.407 Sum_probs=71.9
Q ss_pred eeecCCCCccC-cccccccccHhHHHHHHHHHhhhc--cceeeccCCCcCcccCCCCceechhhHHHHHHHHHhhcC--C
Q psy1924 181 VNVGEDCPVFD-GLYEFCQLSAGGSVAAAVKLNKQA--SEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYH--Q 255 (265)
Q Consensus 181 v~aG~D~~~~d-~l~~~a~lsaGg~l~a~~~l~~~~--~~~a~~~~GGyhHA~~~~a~gfC~~n~~ala~~~~~~~~--~ 255 (265)
...+.|+.+.. .+++.+++++|+.+++++.+.... ..+|+++||| |||.+++++|||+|||+|||++++++++ +
T Consensus 110 ~~~d~dt~~~~~~s~~aA~laaG~~l~a~~~v~~g~~~~afa~vrppG-HHA~~~~a~GFC~~Nnvaiaa~~~~~~~~~~ 188 (413)
T 2vqm_A 110 VGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPG-HHAEESTPMGFCYFNSVAVAAKLLQQRLSVS 188 (413)
T ss_dssp EEECTTSTHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCCSCC-TTCBTTBCBTTBSSCHHHHHHHHHHHHSCCS
T ss_pred cCccCCccccchhHHHHHHHHHHHHHHHHHHHhcCCccceeeeccccc-ccCcCCCCCCccccchHHHHHHHHHHhcCCC
Confidence 45566776654 456777899999999999887543 5689999999 9999999999999999999999999764 8
Q ss_pred eEEEEeccCC
Q psy1924 256 RVLYIDVDVH 265 (265)
Q Consensus 256 ~v~i~D~D~H 265 (265)
||+|||||||
T Consensus 189 RV~ivD~DvH 198 (413)
T 2vqm_A 189 KILIVDWDVH 198 (413)
T ss_dssp CEEEEECSSS
T ss_pred eEEEEecccC
Confidence 9999999999
No 19
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=43.15 E-value=21 Score=28.84 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=14.3
Q ss_pred HhCCcEEEEeccccCCC
Q psy1924 95 KYHQRVLYIDVDVHHGD 111 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~ 111 (265)
++..||++||+|..+++
T Consensus 29 ~~g~~VlliD~D~~~~~ 45 (237)
T 1g3q_A 29 DRGRKVLAVDGDLTMAN 45 (237)
T ss_dssp HTTCCEEEEECCTTSCC
T ss_pred hcCCeEEEEeCCCCCCC
Confidence 44689999999998775
No 20
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=42.92 E-value=21 Score=29.24 Aligned_cols=19 Identities=11% Similarity=0.092 Sum_probs=15.2
Q ss_pred HhCCcEEEEeccccCCCcc
Q psy1924 95 KYHQRVLYIDVDVHHGDGV 113 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~G~ 113 (265)
++..||++||+|..+++=+
T Consensus 29 ~~g~~VlliD~D~~~~~~~ 47 (260)
T 3q9l_A 29 QKGKKTVVIDFAIGLRNLD 47 (260)
T ss_dssp HTTCCEEEEECCCSSCCHH
T ss_pred hCCCcEEEEECCCCCCChh
Confidence 4578999999999877643
No 21
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=42.34 E-value=13 Score=30.17 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=15.3
Q ss_pred CCcEEEEeccccCCCccee
Q psy1924 97 HQRVLYIDVDVHHGDGVEE 115 (265)
Q Consensus 97 ~~rv~iiD~D~h~g~G~~~ 115 (265)
.+||++||+|...|+=+..
T Consensus 34 g~~VlliD~D~~~~~l~~~ 52 (245)
T 3ea0_A 34 DIHVLAVDISLPFGDLDMY 52 (245)
T ss_dssp TCCEEEEECCTTTCCGGGG
T ss_pred CCCEEEEECCCCCCCHHHH
Confidence 7899999999987765443
No 22
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=40.90 E-value=24 Score=29.10 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=14.8
Q ss_pred HhCCcEEEEeccccCCCc
Q psy1924 95 KYHQRVLYIDVDVHHGDG 112 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~G 112 (265)
++..||++||+|..+|+=
T Consensus 29 ~~g~~VlliD~D~~~~~l 46 (263)
T 1hyq_A 29 QLGHDVTIVDADITMANL 46 (263)
T ss_dssp HTTCCEEEEECCCSSSSH
T ss_pred hCCCcEEEEECCCCCCCc
Confidence 346899999999987763
No 23
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=35.81 E-value=22 Score=31.73 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=13.2
Q ss_pred HhCCcEEEEeccccCCC
Q psy1924 95 KYHQRVLYIDVDVHHGD 111 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~ 111 (265)
+...||++||+|. +|+
T Consensus 141 ~~g~rVlliD~D~-q~~ 156 (398)
T 3ez2_A 141 MEDLRILVIDLDP-QSS 156 (398)
T ss_dssp GGCCCEEEEEECT-TCH
T ss_pred cCCCeEEEEeCCC-CCC
Confidence 3579999999999 565
No 24
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=34.86 E-value=28 Score=28.07 Aligned_cols=16 Identities=13% Similarity=0.098 Sum_probs=12.8
Q ss_pred HhCCcEEEEeccccCCC
Q psy1924 95 KYHQRVLYIDVDVHHGD 111 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~ 111 (265)
+..+||++||+|.. ++
T Consensus 26 ~~g~~VlliD~D~~-~~ 41 (254)
T 3kjh_A 26 SDYDKIYAVDGDPD-SC 41 (254)
T ss_dssp TTCSCEEEEEECTT-SC
T ss_pred HCCCeEEEEeCCCC-cC
Confidence 34699999999994 54
No 25
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=32.78 E-value=27 Score=28.86 Aligned_cols=22 Identities=9% Similarity=0.226 Sum_probs=16.0
Q ss_pred HhCCcEEEEeccccCCCcceecc
Q psy1924 95 KYHQRVLYIDVDVHHGDGVEEAF 117 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~G~~~~f 117 (265)
++..||++||+|. +++.+...+
T Consensus 27 ~~G~~VlliD~D~-q~~~~~~~~ 48 (269)
T 1cp2_A 27 AMGKTIMVVGCDP-KADSTRLLL 48 (269)
T ss_dssp TTTCCEEEEEECT-TSCSSHHHH
T ss_pred HCCCcEEEEcCCC-CCCHHHHhc
Confidence 3468999999996 556665554
No 26
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=32.58 E-value=30 Score=29.25 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=15.0
Q ss_pred HhCCcEEEEeccccCCCcc
Q psy1924 95 KYHQRVLYIDVDVHHGDGV 113 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~G~ 113 (265)
+...||++||+|..+++=+
T Consensus 31 ~~G~~VlliD~D~~q~~l~ 49 (286)
T 2xj4_A 31 YGGAKVAVIDLDLRQRTSA 49 (286)
T ss_dssp HTTCCEEEEECCTTTCHHH
T ss_pred HCCCcEEEEECCCCCCCHH
Confidence 4578999999999776543
No 27
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=31.95 E-value=30 Score=28.53 Aligned_cols=17 Identities=35% Similarity=0.743 Sum_probs=13.4
Q ss_pred HhCCcEEEEeccccCCCc
Q psy1924 95 KYHQRVLYIDVDVHHGDG 112 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~G 112 (265)
++..||++||+|. +|+-
T Consensus 33 ~~g~~VlliD~D~-~~~~ 49 (257)
T 1wcv_1 33 RLGKRVLLVDLDP-QGNA 49 (257)
T ss_dssp HTTCCEEEEECCT-TCHH
T ss_pred HCCCCEEEEECCC-CcCH
Confidence 3478999999998 5653
No 28
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=30.92 E-value=29 Score=30.96 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=13.3
Q ss_pred HhCCcEEEEeccccCCC
Q psy1924 95 KYHQRVLYIDVDVHHGD 111 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~ 111 (265)
+...||++||+|. +|+
T Consensus 144 ~~g~rVlliD~D~-~~~ 159 (403)
T 3ez9_A 144 RHDLRILVIDLDP-QAS 159 (403)
T ss_dssp GGCCCEEEEEESS-SSG
T ss_pred cCCCeEEEEeCCC-CCC
Confidence 4579999999999 565
No 29
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=30.58 E-value=41 Score=28.72 Aligned_cols=17 Identities=41% Similarity=0.675 Sum_probs=13.8
Q ss_pred HhCCcEEEEeccccCCC
Q psy1924 95 KYHQRVLYIDVDVHHGD 111 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~ 111 (265)
+..+||++||+|...++
T Consensus 119 ~~G~rVLLID~D~~~~~ 135 (286)
T 3la6_A 119 QTNKRVLLIDCDMRKGY 135 (286)
T ss_dssp TTTCCEEEEECCTTTCC
T ss_pred hCCCCEEEEeccCCCCC
Confidence 34689999999998764
No 30
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=28.97 E-value=44 Score=28.32 Aligned_cols=19 Identities=32% Similarity=0.279 Sum_probs=14.4
Q ss_pred HhCCcEEEEeccccCCCcce
Q psy1924 95 KYHQRVLYIDVDVHHGDGVE 114 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~G~~ 114 (265)
+..+||++||+|. +|+-+.
T Consensus 67 ~~G~~VlliD~D~-~~~~~~ 85 (307)
T 3end_A 67 ILGKRVLQIGCDP-KHDSTF 85 (307)
T ss_dssp HTTCCEEEEEESS-SCCTTH
T ss_pred HCCCeEEEEeCCC-CCCHHH
Confidence 4478999999998 565543
No 31
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=28.71 E-value=37 Score=29.56 Aligned_cols=18 Identities=33% Similarity=0.366 Sum_probs=13.6
Q ss_pred HhCCcEEEEeccccCCCcc
Q psy1924 95 KYHQRVLYIDVDVHHGDGV 113 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~G~ 113 (265)
+..+||++||+|. +||-+
T Consensus 74 ~~GkkVllID~Dp-q~~s~ 91 (314)
T 3fwy_A 74 ILGKRVLQIGCDP-KHDST 91 (314)
T ss_dssp HTTCCEEEEEESS-SCCTT
T ss_pred HCCCeEEEEecCC-CCccc
Confidence 4579999999998 45433
No 32
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=27.34 E-value=37 Score=29.97 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=17.7
Q ss_pred HhCCcEEEEeccccCCCcceecce
Q psy1924 95 KYHQRVLYIDVDVHHGDGVEEAFY 118 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~G~~~~f~ 118 (265)
+..+||++||+|.. ++.+..++.
T Consensus 28 ~~G~rVLlID~D~q-~~~~~~l~~ 50 (361)
T 3pg5_A 28 LQGKRVLYVDCDPQ-CNATQLMLT 50 (361)
T ss_dssp HTTCCEEEEECCTT-CTTHHHHSC
T ss_pred hCCCcEEEEEcCCC-CChhhhhcC
Confidence 45799999999976 777766653
No 33
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=27.31 E-value=50 Score=28.30 Aligned_cols=18 Identities=39% Similarity=0.715 Sum_probs=14.6
Q ss_pred HhCCcEEEEeccccCCCc
Q psy1924 95 KYHQRVLYIDVDVHHGDG 112 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~G 112 (265)
+..+||++||+|..+++=
T Consensus 131 ~~G~rVLLID~D~r~~~l 148 (299)
T 3cio_A 131 QSDQKVLFIDADLRRGYS 148 (299)
T ss_dssp HTTCCEEEEECCTTTCCH
T ss_pred hCCCcEEEEECCCCCccH
Confidence 357999999999987653
No 34
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=24.30 E-value=53 Score=28.39 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=12.4
Q ss_pred HhCCcEEEEeccccCC
Q psy1924 95 KYHQRVLYIDVDVHHG 110 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g 110 (265)
+..+||++||+|. ++
T Consensus 40 ~~G~rVLlvD~D~-~~ 54 (324)
T 3zq6_A 40 RSGKKTLVISTDP-AH 54 (324)
T ss_dssp HTTCCEEEEECCS-SC
T ss_pred HCCCcEEEEeCCC-Cc
Confidence 3479999999999 44
No 35
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=24.24 E-value=65 Score=27.11 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=14.0
Q ss_pred HhCCcEEEEeccccCCC
Q psy1924 95 KYHQRVLYIDVDVHHGD 111 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~ 111 (265)
+..+||++||+|...++
T Consensus 109 ~~G~rVLLID~D~~~~~ 125 (271)
T 3bfv_A 109 QAGYKTLIVDGDMRKPT 125 (271)
T ss_dssp HTTCCEEEEECCSSSCC
T ss_pred hCCCeEEEEeCCCCCcc
Confidence 35799999999997764
No 36
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=24.13 E-value=58 Score=28.72 Aligned_cols=16 Identities=19% Similarity=0.706 Sum_probs=12.6
Q ss_pred HhCCcEEEEeccccCCC
Q psy1924 95 KYHQRVLYIDVDVHHGD 111 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~ 111 (265)
++..||++||+| .+|+
T Consensus 170 ~~g~rVlliD~D-~~~~ 185 (373)
T 3fkq_A 170 NMGKKVFYLNIE-QCGT 185 (373)
T ss_dssp HHTCCEEEEECC-TTCC
T ss_pred hCCCCEEEEECC-CCCC
Confidence 347899999999 6653
No 37
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=23.93 E-value=44 Score=27.58 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=13.4
Q ss_pred hCCcEEEEeccccCCCcce
Q psy1924 96 YHQRVLYIDVDVHHGDGVE 114 (265)
Q Consensus 96 ~~~rv~iiD~D~h~g~G~~ 114 (265)
+..||++||+|.. ++-+.
T Consensus 54 ~g~~VlliD~D~~-~~~~~ 71 (267)
T 3k9g_A 54 KNNKVLLIDMDTQ-ASITS 71 (267)
T ss_dssp TTSCEEEEEECTT-CHHHH
T ss_pred CCCCEEEEECCCC-CCHHH
Confidence 5799999999985 43333
No 38
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=23.29 E-value=68 Score=26.79 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=16.5
Q ss_pred HhCCcEEEEeccccCCCcceecce
Q psy1924 95 KYHQRVLYIDVDVHHGDGVEEAFY 118 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~G~~~~f~ 118 (265)
++..||++||+|.. ++.+...+.
T Consensus 28 ~~G~rVlliD~D~q-~~~~~~~~~ 50 (289)
T 2afh_E 28 EMGKKVMIVGCDPK-ADSTRLILH 50 (289)
T ss_dssp HTTCCEEEEEECSS-SCSSHHHHC
T ss_pred HCCCeEEEEecCCC-CCHHHHhcC
Confidence 34789999999984 555555543
No 39
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=22.83 E-value=58 Score=26.87 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=13.6
Q ss_pred HhCCcEEEEeccccCCC
Q psy1924 95 KYHQRVLYIDVDVHHGD 111 (265)
Q Consensus 95 ~~~~rv~iiD~D~h~g~ 111 (265)
++..||++||+|...++
T Consensus 45 ~~G~~VlliD~D~~~~~ 61 (262)
T 2ph1_A 45 RQGKKVGILDADFLGPS 61 (262)
T ss_dssp HTTCCEEEEECCSSCCH
T ss_pred HCCCeEEEEeCCCCCCC
Confidence 34689999999997654
No 40
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=21.69 E-value=59 Score=28.66 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=11.7
Q ss_pred HhCCcEEEEecccc
Q psy1924 95 KYHQRVLYIDVDVH 108 (265)
Q Consensus 95 ~~~~rv~iiD~D~h 108 (265)
+..+||++||.|..
T Consensus 46 ~~G~rVLLvD~D~~ 59 (354)
T 2woj_A 46 QPNKQFLLISTDPA 59 (354)
T ss_dssp CTTSCEEEEECCSS
T ss_pred cCCCeEEEEECCCC
Confidence 34699999999993
Done!