RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1924
(265 letters)
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase;
HET: LLX NHE; 2.05A {Homo sapiens}
Length = 367
Score = 237 bits (606), Expect = 4e-77
Identities = 105/119 (88%), Positives = 113/119 (94%)
Query: 25 NVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVN 84
NVGEDCPVFDGL+EFCQLS GGSVA AVKLN+Q +++ +NW GGLHHAKKSEASGFCYVN
Sbjct: 89 NVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVN 148
Query: 85 DIVLGILELLKYHQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRD 143
DIVL ILELLKYHQRVLYID+D+HHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRD
Sbjct: 149 DIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRD 207
Score = 160 bits (408), Expect = 2e-47
Identities = 70/84 (83%), Positives = 78/84 (92%)
Query: 182 NVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVN 241
NVGEDCPVFDGL+EFCQLS GGSVA AVKLN+Q +++ +NW GGLHHAKKSEASGFCYVN
Sbjct: 89 NVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVN 148
Query: 242 DIVLGILELLKYHQRVLYIDVDVH 265
DIVL ILELLKYHQRVLYID+D+H
Sbjct: 149 DIVLAILELLKYHQRVLYIDIDIH 172
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme,
arginase fold, HDAC8, histon deacetylase, hydroxamate
inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens}
PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A*
2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A*
1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Length = 388
Score = 235 bits (602), Expect = 2e-76
Identities = 62/120 (51%), Positives = 84/120 (70%), Gaps = 1/120 (0%)
Query: 25 NVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVN 84
+G CP +G++++ G ++ AA L ++ INW GG HHAKK EASGFCY+N
Sbjct: 97 GLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLN 156
Query: 85 DIVLGILELLKYHQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGE-YFPGTGDLRD 143
D VLGIL L + +R+LY+D+D+HHGDGVE+AF T +VMTVS HK+ +FPGTGD+ D
Sbjct: 157 DAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSD 216
Score = 163 bits (414), Expect = 3e-48
Identities = 39/84 (46%), Positives = 56/84 (66%)
Query: 182 NVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVN 241
+G CP +G++++ G ++ AA L ++ INW GG HHAKK EASGFCY+N
Sbjct: 97 GLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLN 156
Query: 242 DIVLGILELLKYHQRVLYIDVDVH 265
D VLGIL L + +R+LY+D+D+H
Sbjct: 157 DAVLGILRLRRKFERILYVDLDLH 180
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A
{Homo sapiens}
Length = 376
Score = 223 bits (569), Expect = 2e-71
Identities = 88/120 (73%), Positives = 100/120 (83%), Gaps = 1/120 (0%)
Query: 25 NVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVN 84
NVG+DCPVF GL+EFC G S+ A +LN + +I INW GGLHHAKK EASGFCYVN
Sbjct: 89 NVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVN 148
Query: 85 DIVLGILELLKYHQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGEY-FPGTGDLRD 143
DIV+GILELLKYH RVLYID+D+HHGDGV+EAFY TDRVMTVSFHKYG Y FPGTGD+ +
Sbjct: 149 DIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYE 208
Score = 151 bits (384), Expect = 7e-44
Identities = 59/84 (70%), Positives = 68/84 (80%)
Query: 182 NVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVN 241
NVG+DCPVF GL+EFC G S+ A +LN + +I INW GGLHHAKK EASGFCYVN
Sbjct: 89 NVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVN 148
Query: 242 DIVLGILELLKYHQRVLYIDVDVH 265
DIV+GILELLKYH RVLYID+D+H
Sbjct: 149 DIVIGILELLKYHPRVLYIDIDIH 172
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta
fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2
PDB: 1c3r_A* 1c3s_A*
Length = 375
Score = 216 bits (553), Expect = 4e-69
Identities = 50/121 (41%), Positives = 71/121 (58%), Gaps = 5/121 (4%)
Query: 27 GEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDI 86
G + PV ++ L+ G +V A + K + N GG+HHA KS A+GFCY+N+
Sbjct: 90 GYENPVSYAMFTGSSLATGSTVQAIEEFLK--GNVAFNPAGGMHHAFKSRANGFCYINNP 147
Query: 87 VLGILELLK-YHQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGEYF--PGTGDLRD 143
+GI L K +R+LYID+D HH DGV+EAFY TD+V +S H+ EY G L +
Sbjct: 148 AVGIEYLRKKGFKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEE 207
Query: 144 M 144
+
Sbjct: 208 I 208
Score = 147 bits (374), Expect = 2e-42
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 184 GEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDI 243
G + PV ++ L+ G +V A + K + N GG+HHA KS A+GFCY+N+
Sbjct: 90 GYENPVSYAMFTGSSLATGSTVQAIEEFLK--GNVAFNPAGGMHHAFKSRANGFCYINNP 147
Query: 244 VLGILELLK-YHQRVLYIDVDVH 265
+GI L K +R+LYID+D H
Sbjct: 148 AVGIEYLRKKGFKRILYIDLDAH 170
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A
{Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A*
2vcg_A*
Length = 369
Score = 97.0 bits (242), Expect = 2e-23
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 24 VNVGEDCPVFDGLYEFCQLSAGGSVAA--AVKLNKQASEICINWGGGLHHAKKSEASGFC 81
+ +G E +LSAGG+V V + ++ + G HHA + A GFC
Sbjct: 95 DTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPG-HHAPHNAAMGFC 153
Query: 82 YVNDIVLGILELLKYH--QRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTG 139
N+ + +RV +D DVHHG+G ++ ++ V+T+S H++ + P +G
Sbjct: 154 IFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFPPDSG 213
Query: 140 DLRD 143
+
Sbjct: 214 YSTE 217
Score = 49.3 bits (118), Expect = 4e-07
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 181 VNVGEDCPVFDGLYEFCQLSAGGSVAA--AVKLNKQASEICINWGGGLHHAKKSEASGFC 238
+ +G E +LSAGG+V V + ++ + G HHA + A GFC
Sbjct: 95 DTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPG-HHAPHNAAMGFC 153
Query: 239 YVNDIVLGILELLKYH--QRVLYIDVDVH 265
N+ + +RV +D DVH
Sbjct: 154 IFNNTSVAAGYARAVLGMERVAILDWDVH 182
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A
{Burkholderia pseudomallei 1710B}
Length = 362
Score = 93.3 bits (232), Expect = 3e-22
Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 29 DCPVFDGLYEFCQLSAGGSVAAAVK-LNKQASEICINWGGGLHHAKKSEASGFCYVNDIV 87
CPV + + SA ++AAA + + + G HHA+ A GFCY+N+
Sbjct: 136 SCPVGEHTWRAAYWSAQSALAAAAAVRDGAPAAYALCRPPG-HHARVDAAGGFCYLNNAA 194
Query: 88 LGILELLKYHQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGE--YFPGTGD 140
+ L H RV +D D+HHG G++E FY V+ VS H Y G
Sbjct: 195 IAAQALRARHARVAVLDTDMHHGQGIQEIFYARRDVLYVSIHGDPTNFYPAVAGF 249
Score = 57.1 bits (138), Expect = 1e-09
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 186 DCPVFDGLYEFCQLSAGGSVAAAVK-LNKQASEICINWGGGLHHAKKSEASGFCYVNDIV 244
CPV + + SA ++AAA + + + G HHA+ A GFCY+N+
Sbjct: 136 SCPVGEHTWRAAYWSAQSALAAAAAVRDGAPAAYALCRPPG-HHARVDAAGGFCYLNNAA 194
Query: 245 LGILELLKYHQRVLYIDVDVH 265
+ L H RV +D D+H
Sbjct: 195 IAAQALRARHARVAVLDTDMH 215
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural
genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens}
PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A*
2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Length = 421
Score = 90.6 bits (225), Expect = 4e-21
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 70 HHAKKSEASGFCYVNDIVLGILELLKYH--QRVLYIDVDVHHGDGVEEAFYTTDRVMTVS 127
HHA S A GFC+ N + + +L + ++L +D DVHHG+G ++ FY V+ +S
Sbjct: 187 HHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYIS 246
Query: 128 FHKY--GEYFPGTGDLRD 143
H++ G +FPG+G + +
Sbjct: 247 LHRHDDGNFFPGSGAVDE 264
Score = 47.5 bits (113), Expect = 2e-06
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 227 HHAKKSEASGFCYVNDIVLGILELLKYH--QRVLYIDVDVH 265
HHA S A GFC+ N + + +L + ++L +D DVH
Sbjct: 187 HHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVH 227
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold,
deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N;
2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Length = 341
Score = 88.6 bits (220), Expect = 1e-20
Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 5/116 (4%)
Query: 29 DCPVFDGLYEFCQLSAGGSVAAAVK-LNKQASEICINWGGGLHHAKKSEASGFCYVNDIV 87
+ + G +E S ++ A + + G HHA G+C++N+
Sbjct: 117 ETAISPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPPG-HHAGIDMFGGYCFINNAA 175
Query: 88 LGILELL-KYHQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKY--GEYFPGTGD 140
+ LL K +++ +DVD HHG+G ++ FY V S H + G
Sbjct: 176 VAAQRLLDKGAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDPAEAFPHFLGY 231
Score = 52.8 bits (127), Expect = 3e-08
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 186 DCPVFDGLYEFCQLSAGGSVAAAVK-LNKQASEICINWGGGLHHAKKSEASGFCYVNDIV 244
+ + G +E S ++ A + + G HHA G+C++N+
Sbjct: 117 ETAISPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPPG-HHAGIDMFGGYCFINNAA 175
Query: 245 LGILELL-KYHQRVLYIDVDVH 265
+ LL K +++ +DVD H
Sbjct: 176 VAAQRLLDKGAKKIAILDVDFH 197
>3mbh_A Putative phosphomethylpyrimidine kinase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE PXL; 2.00A {Bacteroides
thetaiotaomicron} PDB: 3mbj_A*
Length = 291
Score = 30.3 bits (69), Expect = 0.61
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 106 DVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDL 141
D H V +R V+ ++PGTGD
Sbjct: 191 DEPHKTSVYAYNRQGNRYWKVTCPYLPAHYPGTGDT 226
>3m31_A Endoplasmic oxidoreductin-1; disulfide mutant, disulfide bond,
electron transport, endopl reticulum, FAD, flavoprotein,
glycoprotein; HET: FAD; 1.85A {Saccharomyces cerevisiae}
PDB: 1rp4_A* 1rq1_A* 3nvj_A*
Length = 388
Score = 29.6 bits (66), Expect = 1.0
Identities = 17/108 (15%), Positives = 38/108 (35%), Gaps = 7/108 (6%)
Query: 8 LQILIVNPFFLYPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGG 67
L L+ + FF Y F +++ + C +D C + A +V + + + W
Sbjct: 31 LSALLKSDFFKY--FRLDLYKQCSFWDANDGLC-----LNRACSVDVVEDWDTLPEYWQP 83
Query: 68 GLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDVDVHHGDGVEE 115
+ + ++ +D L+ L + D + V +
Sbjct: 84 EILGSFNNDTMKEADDSDDECKFLDQLAQTSKKPVDIEDTINYCDVND 131
Score = 29.6 bits (66), Expect = 1.2
Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 7/99 (7%)
Query: 165 LQILIVNPFFLYPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGG 224
L L+ + FF Y F +++ + C +D C + A +V + + + W
Sbjct: 31 LSALLKSDFFKY--FRLDLYKQCSFWDANDGLC-----LNRACSVDVVEDWDTLPEYWQP 83
Query: 225 GLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDVD 263
+ + ++ +D L+ L + D
Sbjct: 84 EILGSFNNDTMKEADDSDDECKFLDQLAQTSKKPVDIED 122
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure
initiative, NEW YORK SGX research center for STRU
genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB:
3hyo_A* 3ibq_A*
Length = 282
Score = 29.1 bits (66), Expect = 1.4
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 107 VHHGDGVEEAFYTTDRVMTVSFHKY-GEYFPGTGDL 141
V D + A+ + + ++ GTGD
Sbjct: 181 VQRADQIGCAWLDEAGHVQYCGARRLPGHYNGTGDT 216
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase,
structural genomics, STRU genomics consortium, SGC,
lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP:
c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 27.7 bits (62), Expect = 4.1
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 80 FCYVNDIVLGILELL 94
F YV+D+V G++ L+
Sbjct: 238 FQYVSDLVNGLVALM 252
Score = 27.7 bits (62), Expect = 4.1
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 237 FCYVNDIVLGILELL 251
F YV+D+V G++ L+
Sbjct: 238 FQYVSDLVNGLVALM 252
>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal
5'-phosphate, vitamin B6, phosphorylation, transferase;
2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A*
Length = 283
Score = 27.3 bits (61), Expect = 5.0
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 110 GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDL 141
++ T D V +S + GTGDL
Sbjct: 203 NQEMQVVVVTADSVNVISHSRVKTDLKGTGDL 234
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 5.1
Identities = 14/129 (10%), Positives = 39/129 (30%), Gaps = 32/129 (24%)
Query: 140 DLRDMERVEKFNVIESRVMFTPDFFLQILIVNPFFLYPSFPVNVGEDCPVFDGLYEFCQL 199
++++ + FN + +++ T F + + FL + ++ D L
Sbjct: 252 NVQNAKAWNAFN-LSCKILLTTRF---KQVTD--FLSAATTTHISLD-HHSMTLTP---- 300
Query: 200 SAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGIL-ELLKYH---- 254
+ + + + L + N L I+ E ++
Sbjct: 301 -------------DEVKSLLLKY---LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 255 QRVLYIDVD 263
+++ D
Sbjct: 345 DNWKHVNCD 353
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin C,
SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 27.3 bits (61), Expect = 5.8
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 80 FCYVNDIVLGILELLKY 96
F ++++ V G+L L K
Sbjct: 247 FTFIDECVEGVLRLTKS 263
Score = 27.3 bits (61), Expect = 5.8
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 237 FCYVNDIVLGILELLKY 253
F ++++ V G+L L K
Sbjct: 247 FTFIDECVEGVLRLTKS 263
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 27.0 bits (60), Expect = 6.9
Identities = 2/15 (13%), Positives = 7/15 (46%)
Query: 80 FCYVNDIVLGILELL 94
F + D + + ++
Sbjct: 222 FTDIRDGIEALYRII 236
Score = 27.0 bits (60), Expect = 6.9
Identities = 2/15 (13%), Positives = 7/15 (46%)
Query: 237 FCYVNDIVLGILELL 251
F + D + + ++
Sbjct: 222 FTDIRDGIEALYRII 236
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 27.0 bits (60), Expect = 7.0
Identities = 4/15 (26%), Positives = 11/15 (73%)
Query: 80 FCYVNDIVLGILELL 94
F YV+D + +++++
Sbjct: 245 FTYVDDGISALMKII 259
Score = 27.0 bits (60), Expect = 7.0
Identities = 4/15 (26%), Positives = 11/15 (73%)
Query: 237 FCYVNDIVLGILELL 251
F YV+D + +++++
Sbjct: 245 FTYVDDGISALMKII 259
>1bk8_A AH-AMP1, antimicrobial protein 1; plant defensin,
cysteine-stabilized ALFA/ beta motif; NMR {Aesculus
hippocastanum} SCOP: g.3.7.5
Length = 50
Score = 24.7 bits (53), Expect = 7.5
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 39 FCQLSAGGSVAAAVKLNKQASEICINWGGGLH---HAKKSEASGFCYVN 84
C + + + C +W H H +++ FCY N
Sbjct: 1 LCNERPSQTWSGNCGNTAHCDKQCQDWEKASHGACHKRENHWKCFCYFN 49
Score = 24.7 bits (53), Expect = 7.5
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 196 FCQLSAGGSVAAAVKLNKQASEICINWGGGLH---HAKKSEASGFCYVN 241
C + + + C +W H H +++ FCY N
Sbjct: 1 LCNERPSQTWSGNCGNTAHCDKQCQDWEKASHGACHKRENHWKCFCYFN 49
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase,
glucose-6-phosphate, yeast, allosteric AC transferase;
HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A*
3nch_A 3naz_A 3o3c_A* 3rsz_A*
Length = 725
Score = 27.1 bits (59), Expect = 7.7
Identities = 26/156 (16%), Positives = 48/156 (30%), Gaps = 17/156 (10%)
Query: 68 GLHHAKKSEASGFCYVNDIVLGILE-LLKYHQRVLYIDVDVHHGDGVEEAFYTTDRVMTV 126
G + E + I I + ++Y L ++ G+ ++ + + +
Sbjct: 391 GQAEVRALENTVHEVTTSIGKRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRIL 450
Query: 127 SFHKYGEYFPG--TGDLRDME---------RVEKFNVIESRV--MFTPDFFLQILIVNPF 173
+ + P T ++ D +V+ FN RV +F P+F NP
Sbjct: 451 ALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDRVKMIFHPEFLNA---NNPI 507
Query: 174 FLYPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAV 209
G VF YE + V
Sbjct: 508 LGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGV 543
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose
synthase, ADP-glucose pyrophosphorylase, agpase B; HET:
PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6
PDB: 1yp3_A* 1yp4_A*
Length = 451
Score = 26.8 bits (60), Expect = 8.3
Identities = 7/42 (16%), Positives = 18/42 (42%)
Query: 146 RVEKFNVIESRVMFTPDFFLQILIVNPFFLYPSFPVNVGEDC 187
+ + +IE ++ D++ S P+ +G++C
Sbjct: 354 CISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNC 395
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.144 0.454
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,401,678
Number of extensions: 268819
Number of successful extensions: 685
Number of sequences better than 10.0: 1
Number of HSP's gapped: 664
Number of HSP's successfully gapped: 41
Length of query: 265
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 173
Effective length of database: 4,133,061
Effective search space: 715019553
Effective search space used: 715019553
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.4 bits)