RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1924
(265 letters)
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 364
Score = 75.2 bits (184), Expect = 3e-16
Identities = 64/140 (45%), Positives = 87/140 (62%), Gaps = 1/140 (0%)
Query: 5 DFFLQILIVNPFFLYPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICIN 64
++ S +G DCP +G++++ G ++ AA L ++ IN
Sbjct: 64 QHLQKVSQEGDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAIN 123
Query: 65 WGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDVDVHHGDGVEEAFYTTDRVM 124
W GG HHAKK EASGFCY+ND VLGIL L + +R+LY+D+D+HHGDGVE+AF T +VM
Sbjct: 124 WSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVM 183
Query: 125 TVSFHKYGEY-FPGTGDLRD 143
TVS HK+ FPGTGD+ D
Sbjct: 184 TVSLHKFSPGFFPGTGDVSD 203
Score = 62.1 bits (150), Expect = 9e-12
Identities = 41/104 (39%), Positives = 60/104 (57%)
Query: 162 DFFLQILIVNPFFLYPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICIN 221
++ S +G DCP +G++++ G ++ AA L ++ IN
Sbjct: 64 QHLQKVSQEGDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAIN 123
Query: 222 WGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDVDVH 265
W GG HHAKK EASGFCY+ND VLGIL L + +R+LY+D+D+H
Sbjct: 124 WSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLH 167
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId:
63363]}
Length = 372
Score = 60.7 bits (146), Expect = 3e-11
Identities = 50/121 (41%), Positives = 71/121 (58%), Gaps = 5/121 (4%)
Query: 27 GEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDI 86
G + PV ++ L+ G +V A + K + N GG+HHA KS A+GFCY+N+
Sbjct: 89 GYENPVSYAMFTGSSLATGSTVQAIEEFLKG--NVAFNPAGGMHHAFKSRANGFCYINNP 146
Query: 87 VLGILELLKYH-QRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGEYF--PGTGDLRD 143
+GI L K +R+LYID+D HH DGV+EAFY TD+V +S H+ EY G L +
Sbjct: 147 AVGIEYLRKKGFKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEE 206
Query: 144 M 144
+
Sbjct: 207 I 207
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 49.2 bits (116), Expect = 2e-07
Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 6/141 (4%)
Query: 9 QILIVNPFFLYPSFPVNVGEDCPVFD-GLYEFCQLSAGGSVAAAVK-LNKQASEICINWG 66
+L F + P V V D + + +AG A K +++
Sbjct: 92 GLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVR 151
Query: 67 GGLHHAKKSEASGFCYVNDIVLGILELLKYHQ--RVLYIDVDVHHGDGVEEAFYTTDRVM 124
HHA S A GFC+ N + + +L + + ++L +D DVHHG+G ++ FY V+
Sbjct: 152 PPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVL 211
Query: 125 TVSFHKYGE--YFPGTGDLRD 143
+S H++ + +FPG+G + +
Sbjct: 212 YISLHRHDDGNFFPGSGAVDE 232
Score = 31.8 bits (71), Expect = 0.072
Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 5/128 (3%)
Query: 143 DMERVEKFNVIESRVMFTPDFFLQILIVNPFFLYPSFPVNVGEDCPVFDGL--YEFCQLS 200
V + + + L L+ F+ + +++ L + +
Sbjct: 68 SERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWA 127
Query: 201 AGGSVAAAVK-LNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQ--RV 257
AG A K +++ HHA S A GFC+ N + + +L + + ++
Sbjct: 128 AGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKI 187
Query: 258 LYIDVDVH 265
L +D DVH
Sbjct: 188 LIVDWDVH 195
>d1bk8a_ g.3.7.5 (A:) Antimicrobial protein 1 (AH-AMP1) {Horse
chestnut (Aesculus hippocastanum) [TaxId: 43364]}
Length = 50
Score = 26.4 bits (58), Expect = 0.53
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 62 CINWGGGLH---HAKKSEASGFCYVN 84
C +W H H +++ FCY N
Sbjct: 24 CQDWEKASHGACHKRENHWKCFCYFN 49
Score = 26.4 bits (58), Expect = 0.53
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 219 CINWGGGLH---HAKKSEASGFCYVN 241
C +W H H +++ FCY N
Sbjct: 24 CQDWEKASHGACHKRENHWKCFCYFN 49
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermus thermophilus [TaxId: 274]}
Length = 302
Score = 26.4 bits (57), Expect = 3.9
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 39 FCQLSAGGSVAAAVKLNKQASE----ICINWGGGL 69
F +S+GG V AA+++ ++ CI+ GG
Sbjct: 259 FLGMSSGGIVWAALQVARELGPGKRVACISPDGGW 293
Score = 26.4 bits (57), Expect = 3.9
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 196 FCQLSAGGSVAAAVKLNKQASE----ICINWGGGL 226
F +S+GG V AA+++ ++ CI+ GG
Sbjct: 259 FLGMSSGGIVWAALQVARELGPGKRVACISPDGGW 293
>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId:
562]}
Length = 213
Score = 26.0 bits (57), Expect = 4.0
Identities = 7/52 (13%), Positives = 18/52 (34%)
Query: 129 HKYGEYFPGTGDLRDMERVEKFNVIESRVMFTPDFFLQILIVNPFFLYPSFP 180
+ E G G + + +++ + ++ +P +L P P
Sbjct: 62 KEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGLTEPLLKAATEGTIPLIP 113
>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus
influenzae [TaxId: 727]}
Length = 212
Score = 25.7 bits (56), Expect = 5.7
Identities = 8/58 (13%), Positives = 20/58 (34%)
Query: 123 VMTVSFHKYGEYFPGTGDLRDMERVEKFNVIESRVMFTPDFFLQILIVNPFFLYPSFP 180
+ + ++ G + E+V + + TP +I+ + +P P
Sbjct: 55 AIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPGLNPKIVKLCQDLNFPITP 112
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine
synthase) {Escherichia coli, isoform B (CysM) [TaxId:
562]}
Length = 292
Score = 25.7 bits (55), Expect = 6.4
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 39 FCQLSAGGSVAAAVKLNKQASE---ICINWGGGL 69
FC +S+GG+VA A+++ K + + I G
Sbjct: 250 FCGVSSGGAVAGALRVAKANPDAVVVAIICDRGD 283
Score = 25.7 bits (55), Expect = 6.4
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 196 FCQLSAGGSVAAAVKLNKQASE---ICINWGGGL 226
FC +S+GG+VA A+++ K + + I G
Sbjct: 250 FCGVSSGGAVAGALRVAKANPDAVVVAIICDRGD 283
>d1v9la2 c.58.1.1 (A:4-179) Glutamate dehydrogenase {Pyrobaculum
islandicum [TaxId: 2277]}
Length = 176
Score = 24.9 bits (54), Expect = 8.0
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 89 GILELLKYHQRVLYIDVDVHHGDG 112
++L +RVL +++ V G
Sbjct: 23 DFYKILSRPRRVLIVNIPVRLDGG 46
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermotoga maritima [TaxId: 2336]}
Length = 293
Score = 25.1 bits (54), Expect = 9.0
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 39 FCQLSAGGSVAAAVKLNKQASE----ICINWGGGL 69
+S+G +VAAA+K+ ++ + +
Sbjct: 253 LVGISSGANVAAALKVAQKLGPDARVVTVAPDHAE 287
Score = 25.1 bits (54), Expect = 9.0
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 196 FCQLSAGGSVAAAVKLNKQASE----ICINWGGGL 226
+S+G +VAAA+K+ ++ + +
Sbjct: 253 LVGISSGANVAAALKVAQKLGPDARVVTVAPDHAE 287
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.144 0.454
Gapped
Lambda K H
0.267 0.0446 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,067,945
Number of extensions: 49313
Number of successful extensions: 190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 20
Length of query: 265
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,254,276
Effective search space: 227023956
Effective search space used: 227023956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.5 bits)