Query psy1928
Match_columns 105
No_of_seqs 112 out of 1451
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 19:52:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1928.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1928hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 1.8E-17 3.9E-22 102.8 11.7 68 1-68 50-118 (144)
2 KOG4207|consensus 99.6 7.3E-16 1.6E-20 99.1 6.6 62 1-62 29-91 (256)
3 TIGR01659 sex-lethal sex-letha 99.6 4.9E-14 1.1E-18 98.2 11.4 63 1-63 209-274 (346)
4 PF13893 RRM_5: RNA recognitio 99.5 3.1E-13 6.7E-18 71.0 8.3 56 2-61 1-56 (56)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 1E-13 2.2E-18 96.3 8.1 65 1-65 285-350 (352)
6 KOG0122|consensus 99.5 1.7E-13 3.8E-18 89.9 7.2 64 1-64 205-269 (270)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 9.2E-13 2E-17 91.5 7.7 64 1-64 19-83 (352)
8 smart00361 RRM_1 RNA recogniti 99.4 2.3E-12 4.9E-17 70.8 7.4 58 1-58 4-69 (70)
9 TIGR01659 sex-lethal sex-letha 99.4 1.1E-12 2.3E-17 91.6 7.1 62 1-62 123-185 (346)
10 KOG0148|consensus 99.4 1.4E-12 3.1E-17 86.9 6.2 65 1-65 78-143 (321)
11 KOG0145|consensus 99.4 1.7E-12 3.7E-17 86.4 6.0 65 2-66 58-123 (360)
12 KOG0107|consensus 99.4 5.8E-12 1.2E-16 79.3 8.0 65 1-69 26-90 (195)
13 PF00076 RRM_1: RNA recognitio 99.4 4.6E-12 1E-16 68.7 6.7 57 1-57 14-70 (70)
14 KOG0105|consensus 99.3 9.4E-12 2E-16 79.2 8.2 61 1-63 22-82 (241)
15 KOG0125|consensus 99.3 8.2E-12 1.8E-16 85.1 6.3 63 1-64 112-174 (376)
16 KOG0113|consensus 99.3 6.4E-11 1.4E-15 79.9 10.2 62 1-62 117-179 (335)
17 TIGR01645 half-pint poly-U bin 99.3 2.1E-11 4.6E-16 90.0 8.0 63 1-63 220-283 (612)
18 smart00360 RRM RNA recognition 99.3 4.4E-11 9.5E-16 64.0 6.8 59 1-59 12-71 (71)
19 TIGR01645 half-pint poly-U bin 99.2 2.1E-11 4.6E-16 89.9 7.0 62 1-62 123-185 (612)
20 KOG0130|consensus 99.2 2.1E-11 4.4E-16 74.1 5.7 65 1-65 88-153 (170)
21 TIGR01648 hnRNP-R-Q heterogene 99.2 1.3E-10 2.8E-15 85.6 10.7 58 1-65 249-308 (578)
22 TIGR01628 PABP-1234 polyadenyl 99.2 4E-11 8.8E-16 88.1 7.9 62 1-62 16-78 (562)
23 KOG0121|consensus 99.2 3.1E-11 6.7E-16 72.7 5.2 62 1-62 52-114 (153)
24 TIGR01628 PABP-1234 polyadenyl 99.2 5.4E-11 1.2E-15 87.5 7.5 63 1-63 301-363 (562)
25 TIGR01622 SF-CC1 splicing fact 99.2 8.7E-11 1.9E-15 84.3 7.7 62 1-62 202-264 (457)
26 KOG4212|consensus 99.2 1.1E-10 2.4E-15 82.4 7.9 69 1-69 60-129 (608)
27 PLN03120 nucleic acid binding 99.2 1.5E-10 3.2E-15 77.5 7.7 62 1-65 20-81 (260)
28 PF14259 RRM_6: RNA recognitio 99.2 2.3E-10 4.9E-15 62.3 7.2 57 1-57 14-70 (70)
29 KOG0144|consensus 99.2 3.6E-11 7.8E-16 84.5 4.8 65 1-65 140-208 (510)
30 smart00362 RRM_2 RNA recogniti 99.2 2.6E-10 5.6E-15 61.2 6.7 58 1-59 15-72 (72)
31 TIGR01642 U2AF_lg U2 snRNP aux 99.1 2.2E-10 4.7E-15 83.2 8.1 62 1-62 311-373 (509)
32 KOG0117|consensus 99.1 2.2E-10 4.7E-15 80.9 7.4 62 1-62 99-162 (506)
33 KOG0146|consensus 99.1 4.1E-11 8.8E-16 80.1 3.5 64 2-65 302-366 (371)
34 KOG0126|consensus 99.1 1.5E-11 3.3E-16 77.9 0.9 63 1-63 51-114 (219)
35 KOG0149|consensus 99.1 1.3E-10 2.7E-15 76.2 4.6 61 1-62 28-89 (247)
36 KOG0144|consensus 99.1 1.8E-10 3.9E-15 81.1 5.5 66 1-66 50-120 (510)
37 TIGR01622 SF-CC1 splicing fact 99.1 6E-10 1.3E-14 80.0 7.4 61 1-62 105-166 (457)
38 KOG0148|consensus 99.0 5.8E-10 1.3E-14 74.6 6.0 57 1-62 180-236 (321)
39 TIGR01642 U2AF_lg U2 snRNP aux 99.0 9.6E-10 2.1E-14 79.8 7.4 62 1-62 435-500 (509)
40 PLN03121 nucleic acid binding 99.0 1.3E-09 2.9E-14 72.1 7.3 60 1-63 21-80 (243)
41 TIGR01648 hnRNP-R-Q heterogene 99.0 5.9E-10 1.3E-14 82.1 6.2 61 1-61 74-135 (578)
42 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 1.3E-09 2.7E-14 79.2 7.4 58 1-62 292-349 (481)
43 KOG0127|consensus 99.0 8.8E-10 1.9E-14 79.6 6.5 65 1-65 133-197 (678)
44 cd00590 RRM RRM (RNA recogniti 99.0 3.7E-09 8.1E-14 56.9 7.4 60 1-60 15-74 (74)
45 KOG0108|consensus 99.0 6.9E-10 1.5E-14 79.3 5.4 69 1-69 34-103 (435)
46 KOG0145|consensus 99.0 3.4E-09 7.4E-14 70.9 8.2 63 2-64 295-358 (360)
47 KOG0146|consensus 99.0 5.7E-10 1.2E-14 74.7 4.3 68 1-68 35-106 (371)
48 KOG0111|consensus 99.0 5.4E-10 1.2E-14 73.0 4.0 67 2-68 27-94 (298)
49 KOG0124|consensus 99.0 8E-10 1.7E-14 76.8 4.5 65 1-65 129-194 (544)
50 PLN03213 repressor of silencin 99.0 1.8E-09 3.9E-14 77.6 6.4 59 1-62 26-86 (759)
51 KOG0415|consensus 99.0 1.1E-09 2.4E-14 75.7 5.0 62 1-62 255-317 (479)
52 KOG0116|consensus 98.9 8.6E-09 1.9E-13 73.4 9.0 62 1-63 304-366 (419)
53 KOG4661|consensus 98.9 2.4E-09 5.3E-14 78.0 5.9 65 1-65 421-486 (940)
54 COG0724 RNA-binding proteins ( 98.9 4.6E-09 9.9E-14 69.2 6.7 62 1-62 131-193 (306)
55 KOG0117|consensus 98.9 5.1E-09 1.1E-13 74.1 5.9 57 2-65 276-332 (506)
56 KOG0131|consensus 98.9 4.2E-09 9.1E-14 66.9 4.5 61 2-62 26-87 (203)
57 KOG0123|consensus 98.8 1.4E-08 3E-13 71.6 6.9 60 1-62 92-151 (369)
58 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.8 1.8E-08 3.8E-13 73.3 7.6 59 1-62 112-172 (481)
59 KOG0123|consensus 98.8 1.5E-08 3.2E-13 71.5 6.7 61 1-63 14-74 (369)
60 KOG0109|consensus 98.8 1.1E-08 2.3E-13 69.3 5.1 56 2-64 19-74 (346)
61 KOG4208|consensus 98.7 3.3E-08 7.1E-13 63.9 6.0 62 2-63 66-129 (214)
62 KOG0147|consensus 98.7 3.5E-08 7.6E-13 71.3 6.0 62 1-62 294-356 (549)
63 KOG0131|consensus 98.7 4.7E-08 1E-12 62.2 5.4 64 2-65 113-178 (203)
64 KOG4206|consensus 98.6 1.2E-07 2.5E-12 62.0 5.5 59 2-62 30-88 (221)
65 KOG0114|consensus 98.6 2.6E-07 5.7E-12 54.0 6.2 59 2-62 35-93 (124)
66 KOG0124|consensus 98.6 7.9E-08 1.7E-12 67.1 4.6 62 1-62 226-288 (544)
67 KOG0127|consensus 98.5 1.2E-07 2.6E-12 68.9 4.9 65 1-65 21-86 (678)
68 KOG0109|consensus 98.5 1.2E-07 2.6E-12 64.2 4.6 56 1-63 94-149 (346)
69 KOG0533|consensus 98.5 4.9E-07 1.1E-11 60.4 6.4 62 1-62 99-160 (243)
70 KOG0110|consensus 98.5 5.6E-07 1.2E-11 66.9 7.2 64 1-64 531-598 (725)
71 KOG0110|consensus 98.5 8.8E-08 1.9E-12 71.0 2.9 63 1-63 629-692 (725)
72 KOG0153|consensus 98.4 5.4E-07 1.2E-11 62.3 5.3 58 1-63 244-302 (377)
73 KOG4209|consensus 98.4 2.6E-06 5.6E-11 56.7 7.4 60 2-62 118-178 (231)
74 KOG0132|consensus 98.3 1E-06 2.2E-11 66.3 5.6 57 1-62 437-493 (894)
75 KOG0226|consensus 98.3 4.1E-07 8.8E-12 60.7 1.7 64 2-65 207-271 (290)
76 KOG1190|consensus 98.2 9.2E-06 2E-10 57.5 7.6 57 2-62 315-371 (492)
77 KOG2314|consensus 98.2 3.5E-06 7.6E-11 61.7 4.7 61 2-62 81-142 (698)
78 KOG0106|consensus 98.1 2E-06 4.3E-11 56.5 2.2 55 1-62 17-71 (216)
79 KOG0147|consensus 98.0 7.3E-06 1.6E-10 59.6 4.5 61 1-62 195-256 (549)
80 KOG4205|consensus 98.0 5.9E-06 1.3E-10 57.2 3.5 68 2-70 23-91 (311)
81 KOG4205|consensus 97.9 2E-05 4.4E-10 54.5 5.2 67 1-68 113-180 (311)
82 KOG0120|consensus 97.9 4E-05 8.7E-10 55.9 6.3 62 1-62 425-490 (500)
83 KOG1995|consensus 97.9 4.2E-05 9E-10 53.3 5.8 64 1-64 82-154 (351)
84 KOG4660|consensus 97.8 7.9E-06 1.7E-10 59.5 1.0 53 1-57 91-143 (549)
85 KOG4212|consensus 97.6 0.00011 2.3E-09 52.9 4.5 56 2-61 553-608 (608)
86 KOG4454|consensus 97.6 8.5E-05 1.8E-09 48.9 3.5 60 2-62 26-85 (267)
87 COG5175 MOT2 Transcriptional r 97.6 0.00022 4.8E-09 49.8 5.7 60 3-62 138-201 (480)
88 KOG1548|consensus 97.5 0.00031 6.8E-09 49.0 5.6 61 2-62 151-219 (382)
89 KOG4211|consensus 97.5 0.00031 6.8E-09 50.9 5.7 61 1-64 26-86 (510)
90 KOG2202|consensus 97.5 4E-05 8.6E-10 51.3 0.9 61 2-62 85-146 (260)
91 KOG0120|consensus 97.4 0.00012 2.7E-09 53.4 2.7 61 2-62 306-367 (500)
92 KOG1457|consensus 97.4 0.0015 3.3E-08 43.3 7.3 61 2-62 51-116 (284)
93 KOG1548|consensus 97.3 0.0011 2.4E-08 46.3 6.6 58 2-62 293-350 (382)
94 PF04059 RRM_2: RNA recognitio 97.3 0.0016 3.5E-08 37.8 6.0 54 9-62 27-85 (97)
95 PF11608 Limkain-b1: Limkain b 97.3 0.0014 3E-08 37.1 5.5 52 2-62 23-75 (90)
96 KOG0151|consensus 97.2 0.00062 1.3E-08 51.5 4.5 64 2-65 191-258 (877)
97 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.0017 3.8E-08 37.9 5.4 60 2-62 22-90 (100)
98 KOG4211|consensus 97.2 0.00071 1.5E-08 49.1 4.3 61 1-62 119-180 (510)
99 KOG1456|consensus 97.1 0.0023 4.9E-08 45.4 6.6 57 2-62 305-361 (494)
100 PF08952 DUF1866: Domain of un 97.1 0.0037 8E-08 38.9 6.5 56 2-65 53-108 (146)
101 PF08777 RRM_3: RNA binding mo 97.1 0.0011 2.4E-08 39.0 4.1 55 1-60 17-76 (105)
102 PF14605 Nup35_RRM_2: Nup53/35 97.1 0.00096 2.1E-08 34.5 3.3 37 2-43 17-53 (53)
103 KOG0106|consensus 97.1 0.0003 6.6E-09 46.4 1.7 54 1-61 115-168 (216)
104 KOG1456|consensus 96.8 0.0057 1.2E-07 43.5 6.4 56 3-62 140-197 (494)
105 KOG4210|consensus 96.8 0.0011 2.3E-08 45.6 2.8 63 2-65 202-265 (285)
106 KOG4307|consensus 96.8 0.0039 8.5E-08 47.4 5.5 60 1-60 883-943 (944)
107 KOG1855|consensus 96.7 0.0015 3.4E-08 46.8 2.7 48 2-49 248-309 (484)
108 KOG1996|consensus 96.2 0.023 4.9E-07 39.3 6.0 60 3-62 304-365 (378)
109 PF08675 RNA_bind: RNA binding 95.9 0.036 7.8E-07 31.4 4.9 41 1-48 24-64 (87)
110 KOG4849|consensus 95.8 0.03 6.6E-07 39.6 5.2 49 11-59 108-157 (498)
111 KOG1190|consensus 95.7 0.022 4.7E-07 41.0 4.4 58 2-62 167-226 (492)
112 PF04847 Calcipressin: Calcipr 95.5 0.058 1.3E-06 34.9 5.5 56 2-62 12-69 (184)
113 KOG1365|consensus 95.4 0.014 3.1E-07 41.7 2.7 62 1-62 296-360 (508)
114 KOG4206|consensus 95.3 0.058 1.3E-06 35.7 5.2 57 2-62 163-220 (221)
115 PRK11634 ATP-dependent RNA hel 95.0 0.3 6.5E-06 37.3 8.8 35 27-62 527-561 (629)
116 PF03880 DbpA: DbpA RNA bindin 95.0 0.085 1.9E-06 28.9 4.5 42 12-61 33-74 (74)
117 KOG4285|consensus 94.8 0.071 1.5E-06 37.0 4.5 55 2-62 213-268 (350)
118 KOG2068|consensus 94.6 0.016 3.5E-07 40.4 1.1 59 4-62 99-161 (327)
119 KOG2135|consensus 94.3 0.021 4.7E-07 41.6 1.2 57 1-63 389-445 (526)
120 KOG0105|consensus 93.9 0.56 1.2E-05 30.6 7.0 46 1-52 131-176 (241)
121 PF10309 DUF2414: Protein of u 93.9 0.17 3.7E-06 27.0 3.9 40 1-46 20-62 (62)
122 PF15023 DUF4523: Protein of u 93.9 0.24 5.2E-06 30.9 5.1 52 2-60 107-158 (166)
123 PF07576 BRAP2: BRCA1-associat 91.7 1.3 2.8E-05 26.3 6.0 42 11-53 40-81 (110)
124 PF11767 SET_assoc: Histone ly 91.5 0.98 2.1E-05 24.3 4.9 49 2-58 17-65 (66)
125 KOG0112|consensus 91.1 0.23 4.9E-06 39.1 2.9 56 2-62 472-529 (975)
126 KOG1457|consensus 90.7 0.53 1.1E-05 31.6 3.9 48 2-52 227-274 (284)
127 KOG3152|consensus 90.2 0.19 4.2E-06 34.1 1.7 54 2-55 91-157 (278)
128 KOG0128|consensus 90.1 0.14 2.9E-06 40.0 1.0 62 2-63 753-814 (881)
129 KOG4676|consensus 89.5 0.36 7.9E-06 34.8 2.7 59 1-60 23-85 (479)
130 KOG0128|consensus 87.8 0.089 1.9E-06 41.0 -1.3 52 1-52 683-735 (881)
131 KOG4574|consensus 87.8 0.53 1.2E-05 37.1 2.7 59 2-65 315-375 (1007)
132 KOG1365|consensus 87.7 0.2 4.4E-06 36.0 0.4 61 1-62 177-241 (508)
133 KOG0129|consensus 87.0 1.6 3.4E-05 32.5 4.6 44 2-45 387-432 (520)
134 KOG4660|consensus 87.0 2.2 4.8E-05 32.0 5.4 54 9-62 413-471 (549)
135 KOG4307|consensus 86.2 0.37 8.1E-06 37.2 1.2 61 2-62 451-512 (944)
136 smart00596 PRE_C2HC PRE_C2HC d 86.1 0.95 2.1E-05 24.6 2.4 59 1-62 3-63 (69)
137 KOG2193|consensus 86.1 0.49 1.1E-05 34.6 1.6 40 26-65 37-77 (584)
138 KOG2416|consensus 85.5 1.3 2.8E-05 33.7 3.6 56 2-62 461-520 (718)
139 PF15513 DUF4651: Domain of un 81.2 2.9 6.4E-05 22.2 3.0 18 1-18 10-27 (62)
140 PF07530 PRE_C2HC: Associated 80.6 2.7 5.9E-05 22.7 2.8 59 1-62 3-63 (68)
141 KOG0115|consensus 80.1 1.8 4E-05 29.5 2.5 46 2-47 48-93 (275)
142 KOG2193|consensus 67.1 1.5 3.2E-05 32.2 -0.4 61 2-65 97-158 (584)
143 PF02714 DUF221: Domain of unk 61.0 13 0.00028 25.7 3.4 32 29-62 1-32 (325)
144 KOG0804|consensus 60.2 23 0.00049 26.4 4.4 42 11-53 101-142 (493)
145 KOG0112|consensus 59.2 2.4 5.2E-05 33.7 -0.6 61 1-61 388-448 (975)
146 PLN03134 glycine-rich RNA-bind 55.1 38 0.00082 20.9 4.4 10 37-46 84-93 (144)
147 COG4907 Predicted membrane pro 51.6 20 0.00042 27.0 3.0 12 37-48 526-537 (595)
148 KOG2591|consensus 50.9 17 0.00037 27.8 2.7 31 29-59 215-247 (684)
149 PF10567 Nab6_mRNP_bdg: RNA-re 41.4 78 0.0017 22.3 4.5 58 5-62 35-106 (309)
150 PF03439 Spt5-NGN: Early trans 40.2 52 0.0011 18.2 3.1 25 25-49 43-67 (84)
151 KOG4210|consensus 40.1 19 0.0004 25.1 1.4 52 5-56 108-160 (285)
152 PF03468 XS: XS domain; Inter 38.6 69 0.0015 19.1 3.6 41 2-44 34-75 (116)
153 PF11823 DUF3343: Protein of u 33.3 82 0.0018 16.8 3.1 24 28-51 3-26 (73)
154 COG4907 Predicted membrane pro 33.1 60 0.0013 24.5 3.1 10 39-48 525-534 (595)
155 KOG0129|consensus 32.9 1.2E+02 0.0027 23.1 4.7 45 2-47 276-327 (520)
156 KOG4483|consensus 32.3 79 0.0017 23.5 3.5 39 1-45 407-446 (528)
157 PF07292 NID: Nmi/IFP 35 domai 29.8 1.1E+02 0.0024 17.4 3.2 33 29-61 1-34 (88)
158 KOG2318|consensus 29.7 94 0.002 24.1 3.7 36 27-62 269-306 (650)
159 KOG1232|consensus 28.8 1.4E+02 0.003 22.2 4.3 43 1-43 240-286 (511)
160 KOG4019|consensus 28.6 1.2E+02 0.0027 19.8 3.7 37 26-62 51-88 (193)
161 PRK11230 glycolate oxidase sub 28.4 2E+02 0.0043 21.7 5.3 40 8-47 216-255 (499)
162 KOG2891|consensus 27.4 40 0.00087 23.7 1.4 31 2-32 178-214 (445)
163 PF09902 DUF2129: Uncharacteri 27.3 1.1E+02 0.0025 16.6 3.9 38 5-50 16-53 (71)
164 PRK02302 hypothetical protein; 27.2 1.3E+02 0.0028 17.2 4.0 37 6-50 23-59 (89)
165 PRK02886 hypothetical protein; 25.6 1.4E+02 0.003 17.0 3.9 37 6-50 21-57 (87)
166 PF06014 DUF910: Bacterial pro 24.6 28 0.0006 18.5 0.2 14 1-14 6-19 (62)
167 PLN02805 D-lactate dehydrogena 22.8 3E+02 0.0065 21.2 5.3 40 8-47 293-332 (555)
168 PF12829 Mhr1: Transcriptional 22.2 1.5E+02 0.0032 17.1 2.8 22 26-47 51-72 (91)
169 PRK08559 nusG transcription an 21.7 1.1E+02 0.0025 18.9 2.6 24 25-48 45-68 (153)
170 PF12687 DUF3801: Protein of u 20.4 2.6E+02 0.0055 18.4 4.1 47 4-52 49-96 (204)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.77 E-value=1.8e-17 Score=102.85 Aligned_cols=68 Identities=28% Similarity=0.461 Sum_probs=62.7
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccCCCC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVSVLE 68 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~~~~ 68 (105)
+|+++|++||.|.++.|+.++ ++++++||||+|.+.++|++||+.||+..|.++.|+|+++..++..+
T Consensus 50 ~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~~~~ 118 (144)
T PLN03134 50 SLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSAP 118 (144)
T ss_pred HHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcCCCCC
Confidence 589999999999999999998 99999999999999999999999999999999999999988555443
No 2
>KOG4207|consensus
Probab=99.64 E-value=7.3e-16 Score=99.11 Aligned_cols=62 Identities=27% Similarity=0.489 Sum_probs=60.3
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+.+|++||.|-.|.|++|+ +..+++|+||-|.+..+|+.|+++|++.+|+++.|.|+.+.
T Consensus 29 ~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 29 DLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred HHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 589999999999999999999 99999999999999999999999999999999999999998
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.57 E-value=4.9e-14 Score=98.22 Aligned_cols=63 Identities=24% Similarity=0.532 Sum_probs=57.7
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCC--eeEEEEEeec
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDG--RPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~--~~i~V~~~~~ 63 (105)
+|+++|++||.|+.+.|+.++ ++++++|+||+|.+.++|++||+.||+..+.+ +.|+|.++..
T Consensus 209 ~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 209 QLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEE 274 (346)
T ss_pred HHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCc
Confidence 589999999999999999998 99999999999999999999999999998865 6888888873
No 4
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.50 E-value=3.1e-13 Score=71.04 Aligned_cols=56 Identities=38% Similarity=0.663 Sum_probs=50.4
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLA 61 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~ 61 (105)
|.++|++||.|..+.+..++ .+++||+|.+.++|+.|++.||+..+.+++|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999887653 589999999999999999999999999999999986
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.50 E-value=1e-13 Score=96.29 Aligned_cols=65 Identities=22% Similarity=0.411 Sum_probs=61.5
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|.++|++||.|.+++|+.++ ++.++||+||+|.+.++|.+||..||+..|+++.|+|.+...++
T Consensus 285 ~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 285 VLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 488999999999999999998 99999999999999999999999999999999999999988554
No 6
>KOG0122|consensus
Probab=99.48 E-value=1.7e-13 Score=89.95 Aligned_cols=64 Identities=31% Similarity=0.494 Sum_probs=61.0
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|.+||.|..+++.+|+ +|.++|||||+|.+.++|++||+.||+.-+++-.|.|+|+++.
T Consensus 205 dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwskP~ 269 (270)
T KOG0122|consen 205 DLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSKPS 269 (270)
T ss_pred HHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecCCC
Confidence 589999999999999999999 9999999999999999999999999999999999999999854
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.41 E-value=9.2e-13 Score=91.51 Aligned_cols=64 Identities=34% Similarity=0.535 Sum_probs=60.1
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|+.||.|.+|.|+.++ ++++++||||+|.+.++|++||+.||+..|.++.|+|+++.+.
T Consensus 19 ~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~ 83 (352)
T TIGR01661 19 EIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPS 83 (352)
T ss_pred HHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeeccc
Confidence 589999999999999999998 8999999999999999999999999999999999999988633
No 8
>smart00361 RRM_1 RNA recognition motif.
Probab=99.40 E-value=2.3e-12 Score=70.77 Aligned_cols=58 Identities=28% Similarity=0.440 Sum_probs=51.9
Q ss_pred CHHHHhc----cCCCeeEEE-EEeCC-C--CCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEE
Q psy1928 1 MIYELFS----EFGPLKSAK-LHYDR-S--GRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQI 58 (105)
Q Consensus 1 ~l~~~f~----~~G~i~~~~-i~~~~-~--~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V 58 (105)
+|+++|+ +||.|.++. ++.++ + +++++++||.|.+.++|++|+..||+..+.++.|++
T Consensus 4 ~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 4 DFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred hHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 5788888 999999985 66665 5 889999999999999999999999999999998876
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.40 E-value=1.1e-12 Score=91.57 Aligned_cols=62 Identities=26% Similarity=0.561 Sum_probs=58.4
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|+.||.|++|+|+.++ ++++++||||+|.+.++|++||+.|++..+.++.|+|.+++
T Consensus 123 ~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 123 ELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR 185 (346)
T ss_pred HHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence 589999999999999999997 99999999999999999999999999999999999998765
No 10
>KOG0148|consensus
Probab=99.37 E-value=1.4e-12 Score=86.89 Aligned_cols=65 Identities=29% Similarity=0.420 Sum_probs=61.6
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|++.|.+||+|.+++|++|. +++++||+||.|.+.++|++||..||+.=|..+.|+-.|++-++
T Consensus 78 ~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 78 KLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred HHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 488999999999999999998 99999999999999999999999999999999999999998555
No 11
>KOG0145|consensus
Probab=99.36 E-value=1.7e-12 Score=86.38 Aligned_cols=65 Identities=34% Similarity=0.524 Sum_probs=61.3
Q ss_pred HHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccCC
Q psy1928 2 IYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVSV 66 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~~ 66 (105)
++.+|..+|+|++|++++|+ +|++.||+||.|.++.+|++||..||+..+..+.|+|.++++...
T Consensus 58 ~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~ 123 (360)
T KOG0145|consen 58 LRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSD 123 (360)
T ss_pred HHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChh
Confidence 68899999999999999999 999999999999999999999999999999999999999984443
No 12
>KOG0107|consensus
Probab=99.36 E-value=5.8e-12 Score=79.29 Aligned_cols=65 Identities=23% Similarity=0.356 Sum_probs=57.2
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccCCCCC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVSVLEN 69 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~~~~~ 69 (105)
+|+.+|.+||.|..|-|..+ +.+||||+|.+..+|+.|+..|++..|.+..|.|++++..+...+
T Consensus 26 eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r~~r 90 (195)
T KOG0107|consen 26 ELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPRGSR 90 (195)
T ss_pred HHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCccccc
Confidence 58999999999999877665 479999999999999999999999999999999999995555443
No 13
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.36 E-value=4.6e-12 Score=68.68 Aligned_cols=57 Identities=35% Similarity=0.602 Sum_probs=52.7
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEE
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQ 57 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~ 57 (105)
+|+++|+.||.|..+.+..+.++..+++|||+|.+.++|++|++.|++..+.++.|+
T Consensus 14 ~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 14 ELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp HHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred HHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 478999999999999998877888899999999999999999999999999998874
No 14
>KOG0105|consensus
Probab=99.34 E-value=9.4e-12 Score=79.22 Aligned_cols=61 Identities=21% Similarity=0.324 Sum_probs=53.5
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
+|+++|.+||.|..|++... -.+..||||+|.+..+|+.||..-++..+++..|.|++..-
T Consensus 22 eieDlFyKyg~i~~ieLK~r--~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 22 EIEDLFYKYGRIREIELKNR--PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cHHHHHhhhcceEEEEeccC--CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 58999999999999887432 23468999999999999999999999999999999999873
No 15
>KOG0125|consensus
Probab=99.29 E-value=8.2e-12 Score=85.11 Aligned_cols=63 Identities=21% Similarity=0.374 Sum_probs=57.7
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
||+.+|.+||.|.+|+|+.+. .-+|||+||+|++.++|++|-+.||+..+.|++|+|..++.+
T Consensus 112 DL~aMF~kfG~VldVEIIfNE-RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 112 DLRAMFEKFGKVLDVEIIFNE-RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred cHHHHHHhhCceeeEEEEecc-CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 799999999999999999874 335899999999999999999999999999999999998743
No 16
>KOG0113|consensus
Probab=99.28 E-value=6.4e-11 Score=79.93 Aligned_cols=62 Identities=31% Similarity=0.575 Sum_probs=58.9
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
.|+..|++||.|+.|.|+.++ +++++|||||+|.+..+...|.+..++..|+++.|.|.+..
T Consensus 117 kLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 117 KLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred HHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecc
Confidence 378999999999999999998 99999999999999999999999999999999999998876
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.27 E-value=2.1e-11 Score=89.97 Aligned_cols=63 Identities=17% Similarity=0.242 Sum_probs=59.6
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
+|+++|+.||.|.++.|..++ +++++||+||+|.+.++|.+||+.||+..|+|+.|+|.++..
T Consensus 220 dLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 220 DIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred HHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 488999999999999999998 888999999999999999999999999999999999998873
No 18
>smart00360 RRM RNA recognition motif.
Probab=99.25 E-value=4.4e-11 Score=64.02 Aligned_cols=59 Identities=42% Similarity=0.715 Sum_probs=53.5
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEE
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQ 59 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~ 59 (105)
+|+++|+.||.|..+.+..++ ++.++++|||+|.+.++|..|+..+++..+.++.|.|+
T Consensus 12 ~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 12 ELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred HHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 478999999999999998887 78889999999999999999999999999999888763
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.25 E-value=2.1e-11 Score=89.94 Aligned_cols=62 Identities=34% Similarity=0.536 Sum_probs=58.3
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|++||.|.+|.|++++ +++++|||||+|.+.++|++||+.||+..+.++.|+|....
T Consensus 123 ~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 123 TIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred HHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 488999999999999999998 99999999999999999999999999999999999998654
No 20
>KOG0130|consensus
Probab=99.25 E-value=2.1e-11 Score=74.10 Aligned_cols=65 Identities=28% Similarity=0.419 Sum_probs=60.9
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
||.+.|..||.|+.+.+..|. ++..+||++|+|....+|++||..+|+..|.+..|.|.|+-.+.
T Consensus 88 di~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 88 DIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKG 153 (170)
T ss_pred HHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecC
Confidence 578899999999999999998 99999999999999999999999999999999999999987444
No 21
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.24 E-value=1.3e-10 Score=85.57 Aligned_cols=58 Identities=38% Similarity=0.560 Sum_probs=52.6
Q ss_pred CHHHHhccC--CCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEF--GPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~--G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|++| |.|++|.+++ +|+||+|.+.++|++|++.||+..|.++.|+|.++++.+
T Consensus 249 ~L~~~F~~f~~G~I~rV~~~r-------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 249 IIEKSFSEFKPGKVERVKKIR-------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred HHHHHHHhcCCCceEEEEeec-------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 488999999 9999998764 599999999999999999999999999999999998543
No 22
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.23 E-value=4e-11 Score=88.12 Aligned_cols=62 Identities=32% Similarity=0.588 Sum_probs=58.9
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|++||.|.+|.|++++ +++++|||||+|.+.++|++||+.||...+.++.|+|.++.
T Consensus 16 ~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 16 KLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred HHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 588999999999999999998 89999999999999999999999999999999999999876
No 23
>KOG0121|consensus
Probab=99.21 E-value=3.1e-11 Score=72.67 Aligned_cols=62 Identities=35% Similarity=0.553 Sum_probs=57.6
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|++.|.|..|-|=.|+ +..++|||||+|.+.++|+.|+.-+++..+++++|.|.+..
T Consensus 52 qiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 52 QIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred HHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 488999999999999888888 78899999999999999999999999999999999998765
No 24
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.21 E-value=5.4e-11 Score=87.48 Aligned_cols=63 Identities=33% Similarity=0.515 Sum_probs=59.5
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
+|+++|+.||.|.++.++.+.++.+++|+||+|.+.++|++|+..||+..+.++.|.|.++..
T Consensus 301 ~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~ 363 (562)
T TIGR01628 301 KLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQR 363 (562)
T ss_pred HHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccC
Confidence 488999999999999999988899999999999999999999999999999999999998873
No 25
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.19 E-value=8.7e-11 Score=84.29 Aligned_cols=62 Identities=31% Similarity=0.592 Sum_probs=58.7
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|++||.|..|.++.++ ++++++||||+|.+.++|++|+..||+..|.++.|+|.++.
T Consensus 202 ~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 202 ELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred HHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 478999999999999999988 78999999999999999999999999999999999999976
No 26
>KOG4212|consensus
Probab=99.19 E-value=1.1e-10 Score=82.44 Aligned_cols=69 Identities=20% Similarity=0.356 Sum_probs=62.0
Q ss_pred CHHHHhc-cCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccCCCCC
Q psy1928 1 MIYELFS-EFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVSVLEN 69 (105)
Q Consensus 1 ~l~~~f~-~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~~~~~ 69 (105)
||+++|. +.|+|.+|+++.|.++++++|+.|+|.+++.+++|++.||.+.+.+++|+|+.....+...+
T Consensus 60 dLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~q~~~~ 129 (608)
T KOG4212|consen 60 DLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDEQRDQY 129 (608)
T ss_pred hHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCchhhhhh
Confidence 5888885 78999999999999999999999999999999999999999999999999998875544443
No 27
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.17 E-value=1.5e-10 Score=77.46 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=55.3
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.||.|.+|.|+.++ ..++||||+|.+.++++.||. |++..|.++.|.|..+.+.+
T Consensus 20 dLrefFS~~G~I~~V~I~~d~--~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 20 DIKEFFSFSGDIEYVEMQSEN--ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred HHHHHHHhcCCeEEEEEeecC--CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCCC
Confidence 589999999999999998875 246899999999999999996 99999999999999987443
No 28
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.17 E-value=2.3e-10 Score=62.33 Aligned_cols=57 Identities=32% Similarity=0.592 Sum_probs=52.0
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEE
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQ 57 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~ 57 (105)
+|.++|+.+|.|..+.+..++.+.++++|||+|.+.++|++|+..+++..+.++.|+
T Consensus 14 ~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 14 DLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp HHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred HHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 478999999999999999987788899999999999999999999998999998764
No 29
>KOG0144|consensus
Probab=99.17 E-value=3.6e-11 Score=84.54 Aligned_cols=65 Identities=26% Similarity=0.468 Sum_probs=58.1
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCccc-C--CeeEEEEEee-ccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPL-D--GRPMQIQLAA-DVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i-~--~~~i~V~~~~-~~~ 65 (105)
+++++|++||.|++|+|+++..+.++||+||.|...+.|..||+.||+... . ..+|.|+++. .++
T Consensus 140 evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 140 EVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred HHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCC
Confidence 478999999999999999999999999999999999999999999999743 3 4689999998 444
No 30
>smart00362 RRM_2 RNA recognition motif.
Probab=99.15 E-value=2.6e-10 Score=61.21 Aligned_cols=58 Identities=43% Similarity=0.723 Sum_probs=51.7
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEE
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQ 59 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~ 59 (105)
+|+++|..||.+..+.+..++ +.+.+++||+|.+.++|+.|+..+++..+.++.|.|+
T Consensus 15 ~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 15 DLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred HHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 478999999999999888776 6678999999999999999999999999999888763
No 31
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.15 E-value=2.2e-10 Score=83.17 Aligned_cols=62 Identities=32% Similarity=0.327 Sum_probs=58.8
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|+.||.|..+.++.++ ++.++|||||+|.+.++|+.||..||+..|.++.|.|+++.
T Consensus 311 ~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 311 QIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred HHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 478999999999999999987 89999999999999999999999999999999999999986
No 32
>KOG0117|consensus
Probab=99.14 E-value=2.2e-10 Score=80.91 Aligned_cols=62 Identities=23% Similarity=0.404 Sum_probs=57.2
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccC-CeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLD-GRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~-~~~i~V~~~~ 62 (105)
+|.-+|.+.|.|-+++++.|+ +|.++|||||.|.+.++|+.||+.||..+|. ++.|.|..+.
T Consensus 99 eLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 99 ELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred hhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 477899999999999999998 9999999999999999999999999999986 8888888665
No 33
>KOG0146|consensus
Probab=99.13 E-value=4.1e-11 Score=80.15 Aligned_cols=64 Identities=23% Similarity=0.393 Sum_probs=59.9
Q ss_pred HHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 2 IYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
|.++|-.||.|.+.++..|+ +..++||+||.|++..+++.||.+||++.|..++|+|++.++++
T Consensus 302 liQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 302 LIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred HHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 67889999999999999999 99999999999999999999999999999999999999887555
No 34
>KOG0126|consensus
Probab=99.12 E-value=1.5e-11 Score=77.94 Aligned_cols=63 Identities=30% Similarity=0.531 Sum_probs=58.0
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
||..+|+.||.|+.|-+++|+ ||+++||||+.|.++.+..-|+..||+..|.++.|+|.....
T Consensus 51 Dil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 51 DILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred cEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeeccc
Confidence 466789999999999999999 999999999999999998889999999999999999997663
No 35
>KOG0149|consensus
Probab=99.10 E-value=1.3e-10 Score=76.21 Aligned_cols=61 Identities=28% Similarity=0.437 Sum_probs=54.3
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|++.|+.||+|++..|+.|+ +++++||+||+|.+.+.|++|++. ..-.|+|++-.|.++.
T Consensus 28 ~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 28 TLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred HHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 378999999999999999999 999999999999999999999874 4457899988888765
No 36
>KOG0144|consensus
Probab=99.10 E-value=1.8e-10 Score=81.11 Aligned_cols=66 Identities=26% Similarity=0.411 Sum_probs=57.7
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCc-ccC--CeeEEEEEee-ccCC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGV-PLD--GRPMQIQLAA-DVSV 66 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~-~i~--~~~i~V~~~~-~~~~ 66 (105)
||+++|++||.|.+|-|++|+ ++.+++||||.|.+.++|.+|+.+||.. +|. ..+|.|+++. +++.
T Consensus 50 dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 50 DLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERER 120 (510)
T ss_pred HHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhc
Confidence 589999999999999999999 9999999999999999999999999774 454 4688898887 4443
No 37
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.07 E-value=6e-10 Score=80.01 Aligned_cols=61 Identities=34% Similarity=0.500 Sum_probs=57.1
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||. |++..+.++.|.|..+.
T Consensus 105 ~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 105 DLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred HHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecc
Confidence 488999999999999999998 89999999999999999999997 89999999999998765
No 38
>KOG0148|consensus
Probab=99.04 E-value=5.8e-10 Score=74.60 Aligned_cols=57 Identities=25% Similarity=0.462 Sum_probs=53.9
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|++.|+.||.|.+|++..+ ++|+||.|.+++.|..||..+|+.+|.++.++|.|-+
T Consensus 180 ~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGK 236 (321)
T KOG0148|consen 180 LMRQTFSPFGPIQEVRVFKD-----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGK 236 (321)
T ss_pred HHHHhcccCCcceEEEEecc-----cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccc
Confidence 37899999999999999987 6999999999999999999999999999999999987
No 39
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.03 E-value=9.6e-10 Score=79.83 Aligned_cols=62 Identities=26% Similarity=0.326 Sum_probs=55.5
Q ss_pred CHHHHhccCCCeeEEEEEeCC----CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR----SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~----~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|++||.|..|.|+++. ++...|++||+|.+.++|++||..||+..+.++.|.|.+..
T Consensus 435 dl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 435 DVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYG 500 (509)
T ss_pred HHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeC
Confidence 367889999999999998763 34567999999999999999999999999999999999876
No 40
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.03 E-value=1.3e-09 Score=72.07 Aligned_cols=60 Identities=15% Similarity=0.217 Sum_probs=53.1
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
+|+++|+.||.|.+|+|+.+. ...+++||+|.+.+.++.|+. |++..|.++.|.|.....
T Consensus 21 dLrefFS~~G~I~~V~I~~D~--et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 21 DVYDFFSHCGAIEHVEIIRSG--EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred HHHHHHHhcCCeEEEEEecCC--CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 589999999999999999874 334799999999999999996 999999999999887663
No 41
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.03 E-value=5.9e-10 Score=82.13 Aligned_cols=61 Identities=26% Similarity=0.422 Sum_probs=54.0
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccC-CeeEEEEEe
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLD-GRPMQIQLA 61 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~-~~~i~V~~~ 61 (105)
+|.++|++||.|.+++|++|.++++++||||+|.+.++|++||+.||+..+. ++.|.|..+
T Consensus 74 ~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 74 ELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred HHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4889999999999999999989999999999999999999999999998885 666655543
No 42
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.02 E-value=1.3e-09 Score=79.19 Aligned_cols=58 Identities=24% Similarity=0.405 Sum_probs=54.1
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|+.||.|..|+++.++ +++|||+|.+.++|+.||..||+..|.++.|+|.+++
T Consensus 292 ~L~~lF~~yG~V~~vki~~~~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 292 RLFNLFCVYGNVERVKFMKNK----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred HHHHHHHhcCCeEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 488999999999999998863 6899999999999999999999999999999999986
No 43
>KOG0127|consensus
Probab=99.02 E-value=8.8e-10 Score=79.64 Aligned_cols=65 Identities=29% Similarity=0.531 Sum_probs=60.3
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
||..+|+.||.+.+|.|++.+.++.+||+||.|....+|..|++.+|+..|.+++|.|.|+.++.
T Consensus 133 dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 133 DLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred HHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 58899999999999999977788888999999999999999999999999999999999997444
No 44
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.01 E-value=3.7e-09 Score=56.86 Aligned_cols=60 Identities=37% Similarity=0.623 Sum_probs=53.5
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEE
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQL 60 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~ 60 (105)
+|+++|..+|.|..+.+..++...+.+++||+|.+.++|+.|+..+++..+.++.+.|.+
T Consensus 15 ~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 15 DLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred HHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 478899999999999999877557789999999999999999999999999999888763
No 45
>KOG0108|consensus
Probab=99.00 E-value=6.9e-10 Score=79.27 Aligned_cols=69 Identities=28% Similarity=0.521 Sum_probs=63.1
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccCCCCC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVSVLEN 69 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~~~~~ 69 (105)
+|..+|+..|.|.+++++.|+ +|+++||+|++|.+.++++.|++.||+.++.++.|+|.++.......+
T Consensus 34 ~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~~~~~ 103 (435)
T KOG0108|consen 34 QLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRKNAER 103 (435)
T ss_pred HHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccchhHH
Confidence 378899999999999999999 999999999999999999999999999999999999999885554443
No 46
>KOG0145|consensus
Probab=99.00 E-value=3.4e-09 Score=70.85 Aligned_cols=63 Identities=22% Similarity=0.405 Sum_probs=58.8
Q ss_pred HHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 2 IYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
|+++|..||.|..+++++|. +.+=+||+||++.+.++|.-||..||+..+.++.|.|.+.+.+
T Consensus 295 LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 295 LWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred HHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 78999999999999999998 7888899999999999999999999999999999999987644
No 47
>KOG0146|consensus
Probab=98.99 E-value=5.7e-10 Score=74.75 Aligned_cols=68 Identities=19% Similarity=0.298 Sum_probs=59.2
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccC---CeeEEEEEee-ccCCCC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLD---GRPMQIQLAA-DVSVLE 68 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~---~~~i~V~~~~-~~~~~~ 68 (105)
|++.+|..||.|.+|.+.+.+++.++||+||.|.+..+|+.||..||+.... ...|.|+++. +++...
T Consensus 35 dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ADTdkER~l 106 (371)
T KOG0146|consen 35 DVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTL 106 (371)
T ss_pred HHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEeccchHHHHH
Confidence 4788999999999999999889999999999999999999999999997554 5679999987 555443
No 48
>KOG0111|consensus
Probab=98.98 E-value=5.4e-10 Score=73.00 Aligned_cols=67 Identities=27% Similarity=0.392 Sum_probs=60.4
Q ss_pred HHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccCCCC
Q psy1928 2 IYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVSVLE 68 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~~~~ 68 (105)
|...|=.||.|..|.++.|. +.+.++|+||+|...++|..||..||..+|-++.|+|.++++...+.
T Consensus 27 LhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~kike 94 (298)
T KOG0111|consen 27 LHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEKIKE 94 (298)
T ss_pred HHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCccccC
Confidence 45667899999999999998 99999999999999999999999999999999999999998555443
No 49
>KOG0124|consensus
Probab=98.97 E-value=8e-10 Score=76.82 Aligned_cols=65 Identities=32% Similarity=0.533 Sum_probs=59.5
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
.|+..|..||.|++|.+.||+ +++.++|+||+|.-++.|+-|++.||+..++++.|+|..-.+.+
T Consensus 129 tiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmp 194 (544)
T KOG0124|consen 129 TIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMP 194 (544)
T ss_pred HHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCc
Confidence 378899999999999999999 99999999999999999999999999999999999998655444
No 50
>PLN03213 repressor of silencing 3; Provisional
Probab=98.96 E-value=1.8e-09 Score=77.56 Aligned_cols=59 Identities=19% Similarity=0.352 Sum_probs=53.4
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCH--HHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERR--SDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~--~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
||..+|+.||.|..+.|++. ++ ++|+||+|... .++.+||..||+..+.|+.|+|..++
T Consensus 26 DLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 26 DLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred HHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 58999999999999999943 55 89999999976 68999999999999999999999776
No 51
>KOG0415|consensus
Probab=98.96 E-value=1.1e-09 Score=75.72 Aligned_cols=62 Identities=26% Similarity=0.424 Sum_probs=59.5
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
||+-+|+.||.|.+|.|+++. ++.+..||||+|.+.+++++|.=.|+...|+++.|.|.++.
T Consensus 255 DLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 255 DLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred chhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 688899999999999999998 99999999999999999999999999999999999999886
No 52
>KOG0116|consensus
Probab=98.94 E-value=8.6e-09 Score=73.40 Aligned_cols=62 Identities=18% Similarity=0.393 Sum_probs=53.0
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
+|+++|+.||.|+...|.... .++..+|+||+|.+.++++.+|.+ +...|+++++.|+..+.
T Consensus 304 ~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 304 ELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred HHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 478999999999998876654 556569999999999999999997 67888999999998763
No 53
>KOG4661|consensus
Probab=98.93 E-value=2.4e-09 Score=78.03 Aligned_cols=65 Identities=20% Similarity=0.291 Sum_probs=59.4
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
||..+|++||.|+-.+|+.+. +.-.+||+||++.+.++|.+||+.|+..+|+++.|-|+.+++.+
T Consensus 421 DLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKNEp 486 (940)
T KOG4661|consen 421 DLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKNEP 486 (940)
T ss_pred HHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecccCc
Confidence 689999999999999998886 77778999999999999999999999999999999999887444
No 54
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.92 E-value=4.6e-09 Score=69.19 Aligned_cols=62 Identities=42% Similarity=0.693 Sum_probs=58.7
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|..||.|..+.+..++ ++.++++|||+|.+.+++..|+..+++..+.++.|.|.+..
T Consensus 131 ~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 131 DLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred HHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 488999999999999999997 99999999999999999999999999999999999999864
No 55
>KOG0117|consensus
Probab=98.88 E-value=5.1e-09 Score=74.11 Aligned_cols=57 Identities=42% Similarity=0.659 Sum_probs=52.6
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
|+++|+.||.|..|+.++| |+||.|.+.++|.+|++.+|+++|++..|.|.++++.+
T Consensus 276 lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~ 332 (506)
T KOG0117|consen 276 LKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVD 332 (506)
T ss_pred HHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChh
Confidence 7899999999999987765 99999999999999999999999999999999998433
No 56
>KOG0131|consensus
Probab=98.86 E-value=4.2e-09 Score=66.89 Aligned_cols=61 Identities=33% Similarity=0.494 Sum_probs=57.6
Q ss_pred HHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 2 IYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
|+++|-..|.|..+++++++ +...+||||++|.+.++|+=|++.||...+.+++|+|..+.
T Consensus 26 l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 26 LYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred HHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 67888899999999999999 88899999999999999999999999999999999999887
No 57
>KOG0123|consensus
Probab=98.83 E-value=1.4e-08 Score=71.61 Aligned_cols=60 Identities=35% Similarity=0.581 Sum_probs=55.6
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|+.||+|.+|++..+.++ +++| ||+|.+.++|++||..||+..+.++.|.|....
T Consensus 92 ~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 92 SLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred HHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 47899999999999999998877 8999 999999999999999999999999999987765
No 58
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.83 E-value=1.8e-08 Score=73.26 Aligned_cols=59 Identities=19% Similarity=0.308 Sum_probs=51.2
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCC--eeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDG--RPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~--~~i~V~~~~ 62 (105)
+|+++|++||.|.+|.++.++. .++|||+|.+.++|++|++.||+..|.+ ..|+|++++
T Consensus 112 ~L~~~F~~~G~V~~v~i~~~~~---~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk 172 (481)
T TIGR01649 112 VLYQIFNPYGKVLRIVTFTKNN---VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAK 172 (481)
T ss_pred HHHHHHhccCCEEEEEEEecCC---ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEec
Confidence 4889999999999999877542 3689999999999999999999999964 478888876
No 59
>KOG0123|consensus
Probab=98.82 E-value=1.5e-08 Score=71.50 Aligned_cols=61 Identities=31% Similarity=0.502 Sum_probs=57.5
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
+|.+.|+.+|.+.++++++|. + +.+|+||.|.+..+|++||..||...+.+++|+|.|+..
T Consensus 14 ~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r 74 (369)
T KOG0123|consen 14 MLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR 74 (369)
T ss_pred HHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc
Confidence 488999999999999999998 6 999999999999999999999999999999999998873
No 60
>KOG0109|consensus
Probab=98.79 E-value=1.1e-08 Score=69.26 Aligned_cols=56 Identities=16% Similarity=0.340 Sum_probs=52.7
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
|+.+|++||+|.+|+|+.+ |+||...+...++.||..||+.+|++..|+|+.++++
T Consensus 19 lr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 19 LRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred HHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 7889999999999999865 9999999999999999999999999999999998866
No 61
>KOG4208|consensus
Probab=98.74 E-value=3.3e-08 Score=63.89 Aligned_cols=62 Identities=23% Similarity=0.313 Sum_probs=53.6
Q ss_pred HHHHhccC-CCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 2 IYELFSEF-GPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 2 l~~~f~~~-G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
|...|..+ |.+..+++-+++ ||.+++||||+|.+.+.|+-|.+.||+..+.++.|.|.+..+
T Consensus 66 ~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmpp 129 (214)
T KOG4208|consen 66 ILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPP 129 (214)
T ss_pred HhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCc
Confidence 45566666 677788888888 999999999999999999999999999999999998887663
No 62
>KOG0147|consensus
Probab=98.71 E-value=3.5e-08 Score=71.28 Aligned_cols=62 Identities=32% Similarity=0.597 Sum_probs=58.1
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+.+|..||.|..|.++.+. +|..++|+|++|.+.+.|.+|++.||+.+|-|+.|+|....
T Consensus 294 ~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 294 MLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred HHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 478899999999999999998 99999999999999999999999999999999999988765
No 63
>KOG0131|consensus
Probab=98.69 E-value=4.7e-08 Score=62.20 Aligned_cols=64 Identities=30% Similarity=0.421 Sum_probs=57.6
Q ss_pred HHHHhccCCCeeE-EEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 2 IYELFSEFGPLKS-AKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 2 l~~~f~~~G~i~~-~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
|.+.|++||.|.. .++++++ ++.+++|+|+.|.+.+.+.+||+.+|+..+..++|.|.++..+.
T Consensus 113 L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 113 LYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKD 178 (203)
T ss_pred HHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecC
Confidence 6889999998854 5788888 89999999999999999999999999999999999999987444
No 64
>KOG4206|consensus
Probab=98.60 E-value=1.2e-07 Score=62.03 Aligned_cols=59 Identities=31% Similarity=0.572 Sum_probs=53.6
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
|+.+|+.||.|..|.... +.+.+|-|||.|.+.+.|-.|+..|++..+.|+.++|+++.
T Consensus 30 L~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 30 LYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred HHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 677999999999886653 66778999999999999999999999999999999999987
No 65
>KOG0114|consensus
Probab=98.60 E-value=2.6e-07 Score=53.99 Aligned_cols=59 Identities=27% Similarity=0.515 Sum_probs=51.5
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
..++|.+||.|..|+|=..+ ..+|-|||.|.+..+|.+|+.+|++..+.++.+.|-+-.
T Consensus 35 mydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 35 MYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred HHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 57899999999999885543 346899999999999999999999999999999888765
No 66
>KOG0124|consensus
Probab=98.59 E-value=7.9e-08 Score=67.10 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=57.8
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
||+.+|..||.|.+|.+.+++ ....+||+|++|.+......||..||-+.+++..|+|-.+.
T Consensus 226 DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 226 DIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred HHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 688999999999999999998 66789999999999999999999999999999999998875
No 67
>KOG0127|consensus
Probab=98.55 E-value=1.2e-07 Score=68.88 Aligned_cols=65 Identities=22% Similarity=0.360 Sum_probs=59.7
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|.++|+.+|.|..+.++.++ +...+||+||+|...+++++|++..+...+.++.|.|..+..++
T Consensus 21 qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~ 86 (678)
T KOG0127|consen 21 QLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRA 86 (678)
T ss_pred HHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccc
Confidence 578999999999999999998 88899999999999999999999999999999999999887433
No 68
>KOG0109|consensus
Probab=98.55 E-value=1.2e-07 Score=64.23 Aligned_cols=56 Identities=23% Similarity=0.510 Sum_probs=52.2
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
.|+..|.+||.+.+|+|+++ |+||.|+-.++|..||..|++.++.+++++|+.++.
T Consensus 94 ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 94 ELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred HHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 36789999999999999875 999999999999999999999999999999999883
No 69
>KOG0533|consensus
Probab=98.50 E-value=4.9e-07 Score=60.36 Aligned_cols=62 Identities=60% Similarity=1.033 Sum_probs=58.0
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
||+++|..|+.+..+.+.+++.+.+.+.|-|.|...++|..|++.+++..++++.+++....
T Consensus 99 Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 99 DLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred HHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 68999999998999999999999999999999999999999999999999999999888765
No 70
>KOG0110|consensus
Probab=98.50 E-value=5.6e-07 Score=66.93 Aligned_cols=64 Identities=22% Similarity=0.394 Sum_probs=55.1
Q ss_pred CHHHHhccCCCeeEEEEEeCCCC----CcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSG----RSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~----~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|...|.+.|.|..+.|...++. .+.||+||+|.+.++|++|++.|+++.|+++.|.|+++...
T Consensus 531 ~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k 598 (725)
T KOG0110|consen 531 DLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENK 598 (725)
T ss_pred HHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCc
Confidence 46788999999999888765532 24599999999999999999999999999999999998833
No 71
>KOG0110|consensus
Probab=98.49 E-value=8.8e-08 Score=71.05 Aligned_cols=63 Identities=25% Similarity=0.359 Sum_probs=57.0
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
+++++|..||++..|+|+... .+..+|||||+|.++.+|.+|+.+|....+.++.|+++|+.+
T Consensus 629 EVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 629 EVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred HHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 378999999999999998764 566789999999999999999999999999999999999873
No 72
>KOG0153|consensus
Probab=98.43 E-value=5.4e-07 Score=62.32 Aligned_cols=58 Identities=22% Similarity=0.355 Sum_probs=50.2
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHh-CCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQY-NGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l-~~~~i~~~~i~V~~~~~ 63 (105)
+|+++|.+||+|+++.+... ++||||+|.+...|+.|.+.+ +...|++.+|+|.|...
T Consensus 244 dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 244 DIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred HHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 58999999999999987764 579999999999999988755 65678999999999885
No 73
>KOG4209|consensus
Probab=98.37 E-value=2.6e-06 Score=56.72 Aligned_cols=60 Identities=20% Similarity=0.309 Sum_probs=56.0
Q ss_pred HHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 2 IYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
++..|+.+|.|..+.|+.++ .+++++++||+|.+.+.++.++. |++..|.++.++|.+..
T Consensus 118 ~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 118 IELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred hhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 56788999999999999998 88899999999999999999999 99999999999999887
No 74
>KOG0132|consensus
Probab=98.35 E-value=1e-06 Score=66.29 Aligned_cols=57 Identities=32% Similarity=0.422 Sum_probs=53.0
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
||..+|+.||+|.+|.++-. ++||||.+.+..+|++|+..|....+.++.|+|.|+.
T Consensus 437 dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 437 DLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred HHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 58899999999999988764 7999999999999999999999999999999999987
No 75
>KOG0226|consensus
Probab=98.26 E-value=4.1e-07 Score=60.68 Aligned_cols=64 Identities=23% Similarity=0.445 Sum_probs=54.4
Q ss_pred HHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 2 IYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
|-..|.+|-.-....+++++ ++++++|.||.|.+..++..|+..|++..++.+.|++..+.+++
T Consensus 207 l~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 207 LARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred HHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHHh
Confidence 34567776655556788998 99999999999999999999999999999999999988776444
No 76
>KOG1190|consensus
Probab=98.21 E-value=9.2e-06 Score=57.54 Aligned_cols=57 Identities=23% Similarity=0.471 Sum_probs=52.9
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
|..+|..||+|..|+|+.++ +.-|+|.|.+...|+-|+++|++..+.++.|+|.+++
T Consensus 315 LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 315 LFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred HHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 67889999999999999875 3679999999999999999999999999999999998
No 77
>KOG2314|consensus
Probab=98.15 E-value=3.5e-06 Score=61.67 Aligned_cols=61 Identities=28% Similarity=0.371 Sum_probs=54.2
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccC-CeeEEEEEee
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLD-GRPMQIQLAA 62 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~-~~~i~V~~~~ 62 (105)
|.++|+++|.|..+.++-+..+..+||.|++|.+..+|+.|++.|||+.|+ .+.+.|...+
T Consensus 81 l~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~~f~ 142 (698)
T KOG2314|consen 81 LTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVRLFK 142 (698)
T ss_pred HHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEeehhh
Confidence 578999999999999988875668999999999999999999999999987 6788887665
No 78
>KOG0106|consensus
Probab=98.09 E-value=2e-06 Score=56.51 Aligned_cols=55 Identities=22% Similarity=0.367 Sum_probs=48.6
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
||+.+|..||+|..+.+.. +|+||+|.+..+|..||..||+..+.+..+.|+++.
T Consensus 17 d~E~~f~~yg~~~d~~mk~-------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 17 DVERFFKGYGKIPDADMKN-------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred HHHHHHhhccccccceeec-------ccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 5889999999999987753 689999999999999999999999998777777666
No 79
>KOG0147|consensus
Probab=98.04 E-value=7.3e-06 Score=59.61 Aligned_cols=61 Identities=30% Similarity=0.386 Sum_probs=56.5
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
||+++|+.+|.|..|.++.|. +..+++.+||+|.+.+...-||. |.|..+.+.+|.|+...
T Consensus 195 dL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 195 DLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSE 256 (549)
T ss_pred hHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccH
Confidence 689999999999999999998 99999999999999999998885 89999999999998765
No 80
>KOG4205|consensus
Probab=98.02 E-value=5.9e-06 Score=57.16 Aligned_cols=68 Identities=22% Similarity=0.319 Sum_probs=56.5
Q ss_pred HHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccCCCCCC
Q psy1928 2 IYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVSVLENT 70 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~~~~~~ 70 (105)
|++.|..||+|..|.+++++ ++.+++|+||+|.+.+.+.+++.. ..+.|+++.|.++.+.++..+...
T Consensus 23 Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av~r~~~~~~ 91 (311)
T KOG4205|consen 23 LREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAVSREDQTKV 91 (311)
T ss_pred HHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceeccCccccccc
Confidence 78889999999999999999 999999999999988888877763 566788998888887755544433
No 81
>KOG4205|consensus
Probab=97.95 E-value=2e-05 Score=54.54 Aligned_cols=67 Identities=16% Similarity=0.334 Sum_probs=57.8
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccCCCC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVSVLE 68 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~~~~ 68 (105)
++++.|.+||.|..+.++.|. +..+++|+||+|.+.+.+++++. ..-+.|.++.+.|..+.+++...
T Consensus 113 ~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 113 DFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred HHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccchhhcc
Confidence 467889999999999999998 88899999999999999998876 47778999999999998666554
No 82
>KOG0120|consensus
Probab=97.91 E-value=4e-05 Score=55.90 Aligned_cols=62 Identities=15% Similarity=0.254 Sum_probs=53.2
Q ss_pred CHHHHhccCCCeeEEEEEeC-CCCC---cccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYD-RSGR---SLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~-~~~~---~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
|++....+||.|..|.++++ .... ..|..||+|.+.+++++|.++|+|..+.++.++..|-.
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 35667789999999999888 3322 45899999999999999999999999999999988865
No 83
>KOG1995|consensus
Probab=97.89 E-value=4.2e-05 Score=53.26 Aligned_cols=64 Identities=25% Similarity=0.399 Sum_probs=54.1
Q ss_pred CHHHHhccCCCee--------EEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLK--------SAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~--------~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|.++|.+++.|. .|.|.+++ ++.+++.|.|+|.+...|+.||..++++.+.+..|+|..+...
T Consensus 82 ~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 82 DNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAERR 154 (351)
T ss_pred HHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhhhhc
Confidence 4678888888774 25566677 9999999999999999999999999999999999998887633
No 84
>KOG4660|consensus
Probab=97.79 E-value=7.9e-06 Score=59.51 Aligned_cols=53 Identities=17% Similarity=0.345 Sum_probs=45.9
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEE
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQ 57 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~ 57 (105)
+|+.+|+.||+|+.|..-. ...+.+||+|.|..+|++|+++|+..++.++.|+
T Consensus 91 ~L~~~f~~yGeir~ir~t~----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 91 TLLRIFGAYGEIREIRETP----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred HHHHHHHhhcchhhhhccc----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4789999999999865433 3468999999999999999999999999988877
No 85
>KOG4212|consensus
Probab=97.61 E-value=0.00011 Score=52.85 Aligned_cols=56 Identities=29% Similarity=0.421 Sum_probs=48.5
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLA 61 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~ 61 (105)
|++-|..||.+.+.+|+. .+++++ .|.|.++++|+.|+..|++..++++.|+|.++
T Consensus 553 lrDKfre~G~v~yadime--~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 553 LRDKFREIGHVLYADIME--NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred HHHHHHhccceehhhhhc--cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 678899999999888843 455555 89999999999999999999999999999873
No 86
>KOG4454|consensus
Probab=97.59 E-value=8.5e-05 Score=48.94 Aligned_cols=60 Identities=20% Similarity=0.217 Sum_probs=52.3
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
|.++|-.-|.|..+.|+.+++++.+ |+||.|.+...+.-|++-+|+..+.+..+.|++..
T Consensus 26 L~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 26 LSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred HHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 6778888899999988877777777 99999999999999999999999998888777654
No 87
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.59 E-value=0.00022 Score=49.76 Aligned_cols=60 Identities=22% Similarity=0.410 Sum_probs=47.4
Q ss_pred HHHhccCCCeeEEEEEeCC-CCC--cc-cEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 3 YELFSEFGPLKSAKLHYDR-SGR--SL-GTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 3 ~~~f~~~G~i~~~~i~~~~-~~~--~~-g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
.++|..||.|..|.|.+.. +-. .. --++|+|...++|.+||..+++..++|+.|+..+.+
T Consensus 138 ~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatYGT 201 (480)
T COG5175 138 HEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATYGT 201 (480)
T ss_pred hhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEeeecCc
Confidence 4689999999998775532 111 11 234999999999999999999999999999988654
No 88
>KOG1548|consensus
Probab=97.51 E-value=0.00031 Score=48.96 Aligned_cols=61 Identities=26% Similarity=0.351 Sum_probs=54.8
Q ss_pred HHHHhccCCCee--------EEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 2 IYELFSEFGPLK--------SAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 2 l~~~f~~~G~i~--------~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+.++|+++|-|. .|++.+++.|+.+|=+++.|...++++-|+..|+...+.++.|.|+.+.
T Consensus 151 ~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAk 219 (382)
T KOG1548|consen 151 FAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAK 219 (382)
T ss_pred HHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhh
Confidence 457889999775 3788888899999999999999999999999999999999999999887
No 89
>KOG4211|consensus
Probab=97.50 E-value=0.00031 Score=50.86 Aligned_cols=61 Identities=23% Similarity=0.379 Sum_probs=49.7
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|.++|+.++ |..+.+.+. ++++.+.|||+|.+.+++++|++ .+...+..+-|.|..+...
T Consensus 26 ei~~Ff~~~~-I~~~~~~r~-~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 26 EILDFFSNCG-IENLEIPRR-NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred HHHHHHhcCc-eeEEEEecc-CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCc
Confidence 4788888876 777544432 79999999999999999999999 4888888999999887633
No 90
>KOG2202|consensus
Probab=97.47 E-value=4e-05 Score=51.27 Aligned_cols=61 Identities=16% Similarity=0.394 Sum_probs=50.9
Q ss_pred HHHHhc-cCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 2 IYELFS-EFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 2 l~~~f~-~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+...|. +||+|+++.|..+-..+..+-++|.|...++|++|++.||+.-+.+++|.++++.
T Consensus 85 ~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 85 VFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 445555 8999998866554466678899999999999999999999999999999888765
No 91
>KOG0120|consensus
Probab=97.39 E-value=0.00012 Score=53.42 Aligned_cols=61 Identities=34% Similarity=0.446 Sum_probs=55.7
Q ss_pred HHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 2 IYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+.+++..||.+....++.+. ++-+++|+|.+|.+......|++.||+..+.++.|.|+.+.
T Consensus 306 ~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 306 VKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred HHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 56788889999888888887 88999999999999999999999999999999999999876
No 92
>KOG1457|consensus
Probab=97.37 E-value=0.0015 Score=43.33 Aligned_cols=61 Identities=31% Similarity=0.484 Sum_probs=43.4
Q ss_pred HHHHhccCCCeeEEEEEeC-CC-CCcccEEEEEeCCHHHHHHHHHHhCCcccC---CeeEEEEEee
Q psy1928 2 IYELFSEFGPLKSAKLHYD-RS-GRSLGTADLIYERRSDAIKAMKQYNGVPLD---GRPMQIQLAA 62 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~-~~-~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~---~~~i~V~~~~ 62 (105)
|+.+|..|---+.+.+... +. ..-+-++|++|.+..+|++|++.|||..++ ...|.|++++
T Consensus 51 iynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAK 116 (284)
T KOG1457|consen 51 IYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAK 116 (284)
T ss_pred HHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehh
Confidence 5566665532333333222 22 223479999999999999999999999887 6789999987
No 93
>KOG1548|consensus
Probab=97.33 E-value=0.0011 Score=46.27 Aligned_cols=58 Identities=16% Similarity=0.302 Sum_probs=48.4
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
|.+.=.+||.|.+|.|.- .++.|.+-|.|.+.++|+.||..|+|.-+.++.|..+...
T Consensus 293 l~eec~K~G~v~~vvv~d---~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 293 LTEECEKFGQVRKVVVYD---RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHhCCcceEEEec---cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 344457899999987653 3567899999999999999999999999999999888664
No 94
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.29 E-value=0.0016 Score=37.85 Aligned_cols=54 Identities=24% Similarity=0.221 Sum_probs=45.3
Q ss_pred CCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccC----CeeEEEEEee
Q psy1928 9 FGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLD----GRPMQIQLAA 62 (105)
Q Consensus 9 ~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~----~~~i~V~~~~ 62 (105)
.|....++++.|- +.-+.|||||.|.+++.+.+-.+.+++..+. .+.+.|.+|+
T Consensus 27 ~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAr 85 (97)
T PF04059_consen 27 KGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYAR 85 (97)
T ss_pred cCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehhH
Confidence 3566778888887 7888999999999999999999999998775 4667777776
No 95
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.29 E-value=0.0014 Score=37.12 Aligned_cols=52 Identities=25% Similarity=0.308 Sum_probs=36.3
Q ss_pred HHHHhccCC-CeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 2 IYELFSEFG-PLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 2 l~~~f~~~G-~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
|++++..+| .|.+| +.+.|++.|.+++.|++|.+.|++..+.+..|.|++..
T Consensus 23 L~qLsdNCGGkVl~v---------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 23 LRQLSDNCGGKVLSV---------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp HHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred HHHHhhccCCEEEEE---------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 456666765 44443 24689999999999999999999999999999999875
No 96
>KOG0151|consensus
Probab=97.20 E-value=0.00062 Score=51.51 Aligned_cols=64 Identities=27% Similarity=0.463 Sum_probs=55.0
Q ss_pred HHHHhccCCCeeEEEEEeCC----CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 2 IYELFSEFGPLKSAKLHYDR----SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~----~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
|...|..||.|..++|++.. ......|+||.|-+..++++|++.|++..+....+++-|.+..+
T Consensus 191 ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk~V~ 258 (877)
T KOG0151|consen 191 LLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGKAVP 258 (877)
T ss_pred HHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccccccc
Confidence 55678889999999998875 34467899999999999999999999999999999999987333
No 97
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.18 E-value=0.0017 Score=37.90 Aligned_cols=60 Identities=17% Similarity=0.265 Sum_probs=41.5
Q ss_pred HHHHhccCCCeeEEE-EEeC-------CCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCe-eEEEEEee
Q psy1928 2 IYELFSEFGPLKSAK-LHYD-------RSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGR-PMQIQLAA 62 (105)
Q Consensus 2 l~~~f~~~G~i~~~~-i~~~-------~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~-~i~V~~~~ 62 (105)
|.+.|++||.|.+.. +..+ +.-....+..|.|++..+|++||.. ||..+.+. .+-|.+++
T Consensus 22 Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~mvGV~~~~ 90 (100)
T PF05172_consen 22 VLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLMVGVKPCD 90 (100)
T ss_dssp HHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEEEEEEE-H
T ss_pred HHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEEEEEEEcH
Confidence 567899999997653 1111 1112357899999999999999985 99999875 45577764
No 98
>KOG4211|consensus
Probab=97.16 E-value=0.00071 Score=49.08 Aligned_cols=61 Identities=21% Similarity=0.289 Sum_probs=48.5
Q ss_pred CHHHHhccCCCee-EEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLK-SAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~-~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
||.++|+..-.+. .|-++.+..+++.+.|||.|.+.+.|++|+.. |...|..+-|.|..+.
T Consensus 119 dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 119 DIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred HHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhH
Confidence 5788887654332 24566666778999999999999999999985 8888999999998776
No 99
>KOG1456|consensus
Probab=97.15 E-value=0.0023 Score=45.39 Aligned_cols=57 Identities=21% Similarity=0.399 Sum_probs=50.5
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
|..+|=.||.|..|++++.+ .+-+.|++-+..+.++|+..||+..+-+.+|.|..++
T Consensus 305 lFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 305 LFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred hhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhccCccccceEEEeecc
Confidence 45667789999999999875 4679999999999999999999999999999988887
No 100
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.10 E-value=0.0037 Score=38.86 Aligned_cols=56 Identities=20% Similarity=0.429 Sum_probs=43.8
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
|.+.|..||.+.-+++..+ .-.|+|.+-..|-+|+. +++..+.++.|+|+..++.+
T Consensus 53 ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 53 LLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE-----
T ss_pred HHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCccH
Confidence 5677889999988887754 67899999999999998 79999999999999877444
No 101
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.10 E-value=0.0011 Score=39.01 Aligned_cols=55 Identities=18% Similarity=0.326 Sum_probs=33.8
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCc-----ccCCeeEEEEE
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGV-----PLDGRPMQIQL 60 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~-----~i~~~~i~V~~ 60 (105)
+|.++|+.||.|.+|.+... ...++|-|.+.+.|+.|+..+... .|.+..+.++.
T Consensus 17 ~iK~~f~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 17 DIKEAFSQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp HHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred HHHHHHHhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 47899999999999988654 358999999999999999876433 45555555553
No 102
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.07 E-value=0.00096 Score=34.47 Aligned_cols=37 Identities=32% Similarity=0.411 Sum_probs=30.8
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHH
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAM 43 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai 43 (105)
+...|..||+|..+.+.. ...+.++.|.+..+|++|+
T Consensus 17 vl~~F~~fGeI~~~~~~~-----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 17 VLEHFASFGEIVDIYVPE-----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHHHHHhcCCEEEEEcCC-----CCcEEEEEECCHHHHHhhC
Confidence 567899999999987762 2468999999999999885
No 103
>KOG0106|consensus
Probab=97.07 E-value=0.0003 Score=46.35 Aligned_cols=54 Identities=19% Similarity=0.327 Sum_probs=45.0
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLA 61 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~ 61 (105)
+|.+.|.++|.+.+..+. .+++||+|...+++.+||..|++..+.++.|.+...
T Consensus 115 dl~d~~~~~g~~~~~~~~-------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 115 DLKDHFRPAGEVTYVDAR-------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred HHhhhhcccCCCchhhhh-------ccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 477889999988544332 469999999999999999999999999999988443
No 104
>KOG1456|consensus
Probab=96.85 E-value=0.0057 Score=43.47 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=44.9
Q ss_pred HHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCC--eeEEEEEee
Q psy1928 3 YELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDG--RPMQIQLAA 62 (105)
Q Consensus 3 ~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~--~~i~V~~~~ 62 (105)
+.+-...|+|..|.|+.. ++ --|.|+|++.+.|++|.+.||+..|.. ..|+|++++
T Consensus 140 y~Icnp~GkVlRIvIfkk-ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAk 197 (494)
T KOG1456|consen 140 YTICNPQGKVLRIVIFKK-NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAK 197 (494)
T ss_pred hhhcCCCCceEEEEEEec-cc---eeeEEeechhHHHHHHHhhcccccccccceeEEEEecC
Confidence 344456788988877764 33 368899999999999999999999874 578888887
No 105
>KOG4210|consensus
Probab=96.83 E-value=0.0011 Score=45.65 Aligned_cols=63 Identities=24% Similarity=0.356 Sum_probs=53.2
Q ss_pred HHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 2 IYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
|+..|..+|.|..++++.++ ++..++++++.|.+......++.. +...+.++++.|.+....+
T Consensus 202 ~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 202 LKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred HhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCc
Confidence 45577888999999988887 999999999999999999999886 7788889888888776443
No 106
>KOG4307|consensus
Probab=96.78 E-value=0.0039 Score=47.38 Aligned_cols=60 Identities=20% Similarity=0.440 Sum_probs=49.7
Q ss_pred CHHHHhccCCCe-eEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEE
Q psy1928 1 MIYELFSEFGPL-KSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQL 60 (105)
Q Consensus 1 ~l~~~f~~~G~i-~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~ 60 (105)
||.++|.-|--+ .+|.+-++..|+..|.|-|-|.+.++|.+|...|++..|..+.+.+.+
T Consensus 883 dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 883 DIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred HHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 467888877644 455555555899999999999999999999999999999999887754
No 107
>KOG1855|consensus
Probab=96.67 E-value=0.0015 Score=46.78 Aligned_cols=48 Identities=25% Similarity=0.281 Sum_probs=39.4
Q ss_pred HHHHhccCCCeeEEEEEeC---C-C--CC--------cccEEEEEeCCHHHHHHHHHHhCCc
Q psy1928 2 IYELFSEFGPLKSAKLHYD---R-S--GR--------SLGTADLIYERRSDAIKAMKQYNGV 49 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~---~-~--~~--------~~g~~fv~f~~~~~a~~ai~~l~~~ 49 (105)
|.++|+.+|.|..|+|+.. + + +. .+-||+|+|...+.|.+|.+.|+..
T Consensus 248 l~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 248 LSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred HHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 7899999999999999876 3 2 11 2578999999999999999987543
No 108
>KOG1996|consensus
Probab=96.21 E-value=0.023 Score=39.31 Aligned_cols=60 Identities=20% Similarity=0.190 Sum_probs=47.5
Q ss_pred HHHhccCCCeeEEEEEeCC--CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 3 YELFSEFGPLKSAKLHYDR--SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 3 ~~~f~~~G~i~~~~i~~~~--~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
.+...+||.|..|-|..++ --.-.--.||+|...++|.+|+-.||+..++++.+...+-.
T Consensus 304 keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 304 KEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 4456799999988777765 22234568999999999999999999999999987766543
No 109
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.87 E-value=0.036 Score=31.35 Aligned_cols=41 Identities=29% Similarity=0.389 Sum_probs=33.6
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNG 48 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~ 48 (105)
||.++|+.||.| .|.++.+ ..|||...+.+.+..++..+.-
T Consensus 24 DI~qlFspfG~I-~VsWi~d------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 24 DIYQLFSPFGQI-YVSWIND------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp HHHHHCCCCCCE-EEEEECT------TEEEEEECCCHHHHHHHHHHTT
T ss_pred hHHHHhccCCcE-EEEEEcC------CcEEEEeecHHHHHHHHHHhcc
Confidence 589999999975 4566665 4899999999999999888763
No 110
>KOG4849|consensus
Probab=95.77 E-value=0.03 Score=39.60 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=41.4
Q ss_pred CeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEE
Q psy1928 11 PLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQ 59 (105)
Q Consensus 11 ~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~ 59 (105)
++.++++..+. ++.++||+++...+...+++.++.|..++|++..-.|.
T Consensus 108 ~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 108 QFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred HHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 56677777777 99999999999999999999999999999998754443
No 111
>KOG1190|consensus
Probab=95.70 E-value=0.022 Score=40.96 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=43.6
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCC--eeEEEEEee
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDG--RPMQIQLAA 62 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~--~~i~V~~~~ 62 (105)
|..+|++||.|..|.-.....+ =-|+|.|.+.+.|+.|...|++..|.. ..|+|.+++
T Consensus 167 LHqvFS~fG~VlKIiTF~Knn~---FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 167 LHQVFSKFGFVLKIITFTKNNG---FQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred HHHHHhhcceeEEEEEEecccc---hhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 6789999999988744332221 237899999999999999999998864 456666654
No 112
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.51 E-value=0.058 Score=34.92 Aligned_cols=56 Identities=18% Similarity=0.378 Sum_probs=41.7
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhC--CcccCCeeEEEEEee
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYN--GVPLDGRPMQIQLAA 62 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~--~~~i~~~~i~V~~~~ 62 (105)
|+++|..++.+....++.. -.-..|.|.+.+.|..|...|+ +..+.+..++|.++.
T Consensus 12 l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 12 LEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp HHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred HHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 6788999998887765542 4678899999999999999998 889999999999885
No 113
>KOG1365|consensus
Probab=95.42 E-value=0.014 Score=41.66 Aligned_cols=62 Identities=15% Similarity=0.255 Sum_probs=48.6
Q ss_pred CHHHHhccCC-CeeE--EEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFG-PLKS--AKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G-~i~~--~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
||.++|..|- .|.. ++|+.+..|++.|.|||+|.+.+.|..|....+.+....+.|.|.-+.
T Consensus 296 dIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 296 DILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred HHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 3566666655 3444 778887789999999999999999999988777766668888888766
No 114
>KOG4206|consensus
Probab=95.34 E-value=0.058 Score=35.73 Aligned_cols=57 Identities=26% Similarity=0.355 Sum_probs=44.9
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccC-CeeEEEEEee
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLD-GRPMQIQLAA 62 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~-~~~i~V~~~~ 62 (105)
+..+|..|..-..++++... .+.+||+|.+...+..|...+++..|. ...+.|.++.
T Consensus 163 l~~lf~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 163 LSDLFEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHHhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 56677778777777776542 579999999999999999999998887 6777777653
No 115
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=95.02 E-value=0.3 Score=37.30 Aligned_cols=35 Identities=11% Similarity=0.289 Sum_probs=29.5
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 27 GTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 27 g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
.|.||+.. ...+...+..|+...+.++.+.|+.+.
T Consensus 527 ~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 527 SHSTIELP-KGMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred CceEEEcC-hhhHHHHHHHhccccccCCceEEEECC
Confidence 48899987 456788899999999999999999875
No 116
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.02 E-value=0.085 Score=28.88 Aligned_cols=42 Identities=14% Similarity=0.209 Sum_probs=24.4
Q ss_pred eeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy1928 12 LKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLA 61 (105)
Q Consensus 12 i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~ 61 (105)
|-.|.+.. .|+||+.+. +.++.++..|++..+.++.++|+.+
T Consensus 33 IG~I~I~~-------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 33 IGRIDIFD-------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEEEE-S-------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEEEee-------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 44566654 489999884 5788899999999999999999864
No 117
>KOG4285|consensus
Probab=94.78 E-value=0.071 Score=37.00 Aligned_cols=55 Identities=24% Similarity=0.336 Sum_probs=42.2
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCe-eEEEEEee
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGR-PMQIQLAA 62 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~-~i~V~~~~ 62 (105)
|..+|++||.|++..... .-.+-+|-|.+..+|++||. .|+..|++. .|-|..+.
T Consensus 213 vL~~F~~cG~Vvkhv~~~-----ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 213 VLNLFSRCGEVVKHVTPS-----NGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred HHHHHHhhCeeeeeecCC-----CCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 567899999998764432 24688999999999999998 499988865 45566554
No 118
>KOG2068|consensus
Probab=94.59 E-value=0.016 Score=40.40 Aligned_cols=59 Identities=24% Similarity=0.427 Sum_probs=45.2
Q ss_pred HHhccCCCeeEEEEEeCCC----CCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 4 ELFSEFGPLKSAKLHYDRS----GRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 4 ~~f~~~G~i~~~~i~~~~~----~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+.|..||.|..|.+..+.+ .-....++|+|...++|..||..+++..++++.+++.+.+
T Consensus 99 eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~gt 161 (327)
T KOG2068|consen 99 EYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASLGT 161 (327)
T ss_pred ccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhhCC
Confidence 4577889999987776542 1123558999999999999999999998888776665443
No 119
>KOG2135|consensus
Probab=94.25 E-value=0.021 Score=41.61 Aligned_cols=57 Identities=19% Similarity=0.339 Sum_probs=46.6
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
+|...|.+||.|..|.+-+. .-.+.|+|....+|-.|.. .++..|+++.|+|.|-.+
T Consensus 389 ~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 389 DLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhhhhhhhcCccccccccCc-----hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 46778999999998876543 4578999999999866655 488999999999998775
No 120
>KOG0105|consensus
Probab=93.93 E-value=0.56 Score=30.65 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=40.1
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLD 52 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~ 52 (105)
||++++.+-|.++...+.+| +++.|+|...++.+=|+..|....+.
T Consensus 131 DLKDHmReaGdvCfadv~rD------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 131 DLKDHMREAGDVCFADVQRD------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred HHHHHHHhhCCeeeeeeecc------cceeeeeeehhhHHHHHHhhcccccc
Confidence 58888999999999988886 58899999999999999998876655
No 121
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.93 E-value=0.17 Score=26.97 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=30.4
Q ss_pred CHHHHhccC---CCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q psy1928 1 MIYELFSEF---GPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQY 46 (105)
Q Consensus 1 ~l~~~f~~~---G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l 46 (105)
||+.+|..| .....|+++.|. .|-|.|.+.+.|.+|+.+|
T Consensus 20 dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 20 DIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred HHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 466777776 235678888774 6779999999999998764
No 122
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.90 E-value=0.24 Score=30.94 Aligned_cols=52 Identities=23% Similarity=0.370 Sum_probs=39.1
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEE
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQL 60 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~ 60 (105)
+...++.||.|.+|.+.- +-.|+|.|.+...|=+|+.+++. ...+..+.+.|
T Consensus 107 V~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 107 VIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred HHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 345568999999987654 35799999999999999998775 44455566554
No 123
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.70 E-value=1.3 Score=26.35 Aligned_cols=42 Identities=12% Similarity=0.260 Sum_probs=34.4
Q ss_pred CeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCC
Q psy1928 11 PLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDG 53 (105)
Q Consensus 11 ~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~ 53 (105)
.|..++|+++.. -++-.+++.|.+...|..-...+||+.++.
T Consensus 40 ~i~~~riird~~-pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 40 DIEHIRIIRDGT-PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred cEEEEEEeeCCC-CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 466778887642 356789999999999999999999998874
No 124
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.51 E-value=0.98 Score=24.34 Aligned_cols=49 Identities=12% Similarity=0.261 Sum_probs=33.0
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEE
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQI 58 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V 58 (105)
++..+.+|. ... |..+++ --||.|.+..+|++|....++..+....+.+
T Consensus 17 ~K~~Lr~y~-~~~--I~~d~t-----GfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 17 FKKRLRKYR-WDR--IRDDRT-----GFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred HHHHHhcCC-cce--EEecCC-----EEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 455556664 233 233332 3479999999999999999988776655543
No 125
>KOG0112|consensus
Probab=91.13 E-value=0.23 Score=39.11 Aligned_cols=56 Identities=29% Similarity=0.502 Sum_probs=47.3
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCC--eeEEEEEee
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDG--RPMQIQLAA 62 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~--~~i~V~~~~ 62 (105)
|..+|..||.|..|.+-. ...|++|.|.+...++.|++.|.+..|++ +.+.|.++.
T Consensus 472 l~r~fd~fGpir~Idy~h-----gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 472 LNREFDRFGPIRIIDYRH-----GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred HHHHhhccCcceeeeccc-----CCcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 567899999999876643 35799999999999999999999999984 568888776
No 126
>KOG1457|consensus
Probab=90.66 E-value=0.53 Score=31.62 Aligned_cols=48 Identities=23% Similarity=0.310 Sum_probs=34.1
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccC
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLD 52 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~ 52 (105)
|+.+|+.|-.-..++|. .+. .-+.+|++|.+.+.|..|+..|++..|.
T Consensus 227 l~~~~~~~~gf~~l~~~-~~~--g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 227 LKQLLSRYPGFHILKIR-ARG--GMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred HHHHHHhCCCceEEEEe-cCC--CcceEeecHHHHHHHHHHHHHhhcceec
Confidence 67778777543333332 222 2368999999999999999999987765
No 127
>KOG3152|consensus
Probab=90.23 E-value=0.19 Score=34.10 Aligned_cols=54 Identities=19% Similarity=0.354 Sum_probs=41.7
Q ss_pred HHHHhccCCCeeEEEEEeCC-C--------CCcc----cEEEEEeCCHHHHHHHHHHhCCcccCCee
Q psy1928 2 IYELFSEFGPLKSAKLHYDR-S--------GRSL----GTADLIYERRSDAIKAMKQYNGVPLDGRP 55 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~-~--------~~~~----g~~fv~f~~~~~a~~ai~~l~~~~i~~~~ 55 (105)
|+++|+.||.|-.|.+.... + +.+. ..+.|+|.+...|..+...||+.+|+++.
T Consensus 91 lReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 91 LREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGGKK 157 (278)
T ss_pred HHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCCCC
Confidence 67899999999888775443 3 2222 34558999999999999999999999753
No 128
>KOG0128|consensus
Probab=90.12 E-value=0.14 Score=40.01 Aligned_cols=62 Identities=21% Similarity=0.270 Sum_probs=51.8
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
++.++++.|.+..+.++..+.+++++.+++.|.+..++.+++...+...+....+.|..+.+
T Consensus 753 ~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 753 LKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred HHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 56778899999888887777999999999999999999999887777777777777777653
No 129
>KOG4676|consensus
Probab=89.53 E-value=0.36 Score=34.79 Aligned_cols=59 Identities=12% Similarity=0.122 Sum_probs=40.8
Q ss_pred CHHHHhccCCCeeEEEEEeCC----CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEE
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR----SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQL 60 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~----~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~ 60 (105)
+++.+|...|.|..+.++-+. -....-.|||.|.+...+..|-. |-.+++-++.|.|..
T Consensus 23 qm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 23 QMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred HHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 367899999999988765432 12345789999999888877654 655555555554443
No 130
>KOG0128|consensus
Probab=87.83 E-value=0.089 Score=40.97 Aligned_cols=52 Identities=17% Similarity=0.170 Sum_probs=39.1
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLD 52 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~ 52 (105)
||...|..++.|..+.+.... .+..+|.|++.|.+.+++.+||.......+.
T Consensus 683 dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 683 DLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred hhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 466778888877666554334 7788999999999999999999865554443
No 131
>KOG4574|consensus
Probab=87.83 E-value=0.53 Score=37.05 Aligned_cols=59 Identities=25% Similarity=0.393 Sum_probs=48.3
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccC--CeeEEEEEeeccC
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLD--GRPMQIQLAADVS 65 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~--~~~i~V~~~~~~~ 65 (105)
|..+++.||.+.+...+++ -..+.|+|...+.|..|+.+|+++++. +-+.+|.+++..+
T Consensus 315 L~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 315 LATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred HHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 5668899999988877665 468999999999999999999998765 6678888887333
No 132
>KOG1365|consensus
Probab=87.68 E-value=0.2 Score=36.02 Aligned_cols=61 Identities=18% Similarity=0.272 Sum_probs=44.6
Q ss_pred CHHHHhcc----CCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSE----FGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~----~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
|+.++|.. -+..+.|-++..++++..|-|||.|...++|+.|+.. |...|+.+.|.+..++
T Consensus 177 dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRST 241 (508)
T KOG1365|consen 177 DVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRST 241 (508)
T ss_pred HHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHHh
Confidence 35566641 1234566666666899999999999999999999985 7777777777666554
No 133
>KOG0129|consensus
Probab=87.03 E-value=1.6 Score=32.54 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=38.4
Q ss_pred HHHHhc-cCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHH
Q psy1928 2 IYELFS-EFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQ 45 (105)
Q Consensus 2 l~~~f~-~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~ 45 (105)
|-.+|. -||.|+.+.|-.|+ -..++|-+-|+|.+.....+||.+
T Consensus 387 LA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 387 LAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred HHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 455666 69999999999996 888999999999999999999974
No 134
>KOG4660|consensus
Probab=87.00 E-value=2.2 Score=32.04 Aligned_cols=54 Identities=20% Similarity=0.182 Sum_probs=40.6
Q ss_pred CCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccC----CeeEEEEEee
Q psy1928 9 FGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLD----GRPMQIQLAA 62 (105)
Q Consensus 9 ~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~----~~~i~V~~~~ 62 (105)
.|.=..++++.|- +....|||||.|.+.+.+....++.|++... .+.+.|.|++
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYAr 471 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYAR 471 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhh
Confidence 4444566777765 6667899999999999999999999998643 3455666555
No 135
>KOG4307|consensus
Probab=86.19 E-value=0.37 Score=37.21 Aligned_cols=61 Identities=10% Similarity=-0.005 Sum_probs=44.6
Q ss_pred HHHHhccCCCeeE-EEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 2 IYELFSEFGPLKS-AKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 2 l~~~f~~~G~i~~-~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+.++|++.-.|++ |+|-+.++++....+||.|.+.+++.+|+..-+.+.+..+.|.|.-..
T Consensus 451 ~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 451 PVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred hhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 4566766555654 777666688889999999999888888877556666667777777444
No 136
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=86.14 E-value=0.95 Score=24.62 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=41.7
Q ss_pred CHHHHhccCC-CeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFG-PLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G-~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|.+.|.+.| ++..++.+... +..+...-+|+.....+... .|+-+.|.+..+.|+...
T Consensus 3 ~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 3 QIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 4778888888 66788877776 56677888888875544333 456667778888877543
No 137
>KOG2193|consensus
Probab=86.08 E-value=0.49 Score=34.59 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=33.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCc-ccCCeeEEEEEeeccC
Q psy1928 26 LGTADLIYERRSDAIKAMKQYNGV-PLDGRPMQIQLAADVS 65 (105)
Q Consensus 26 ~g~~fv~f~~~~~a~~ai~~l~~~-~i~~~~i~V~~~~~~~ 65 (105)
.+|+|+.+.+...+.+|++.++++ ++.++.+.|..+.++.
T Consensus 37 ~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kk 77 (584)
T KOG2193|consen 37 SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKK 77 (584)
T ss_pred cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHH
Confidence 589999999999999999999986 5778888888776433
No 138
>KOG2416|consensus
Probab=85.53 E-value=1.3 Score=33.72 Aligned_cols=56 Identities=11% Similarity=0.135 Sum_probs=39.3
Q ss_pred HHHHhc-cCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccC---CeeEEEEEee
Q psy1928 2 IYELFS-EFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLD---GRPMQIQLAA 62 (105)
Q Consensus 2 l~~~f~-~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~---~~~i~V~~~~ 62 (105)
|+.++. ..|.|... +| .+.+..|||.|.+.++|...+.+||+..+- .+-|.|.|..
T Consensus 461 LkelL~rtgg~Vee~-Wm----DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 461 LKELLGRTGGNVEEF-WM----DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred HHHHHhhccCchHHH-HH----HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecc
Confidence 556665 34444443 22 134679999999999999999999998654 4567777765
No 139
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=81.19 E-value=2.9 Score=22.23 Aligned_cols=18 Identities=22% Similarity=0.445 Sum_probs=14.5
Q ss_pred CHHHHhccCCCeeEEEEE
Q psy1928 1 MIYELFSEFGPLKSAKLH 18 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~ 18 (105)
+|+++|+..|.|.-+.+.
T Consensus 10 ~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 10 EIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHhcCcEEEEEEc
Confidence 488999999999766553
No 140
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=80.62 E-value=2.7 Score=22.68 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=40.8
Q ss_pred CHHHHhccCC-CeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFG-PLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G-~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|.+.|...| .+.++.-+..+ +..+....||+.....+.. +.|+-..+.+..++|+...
T Consensus 3 ~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k---~i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 3 EIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNK---EIYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccc---ceeehHhhCCeEEEEecCC
Confidence 4667777777 66777766666 6777788899987654422 3456667778788877544
No 141
>KOG0115|consensus
Probab=80.13 E-value=1.8 Score=29.54 Aligned_cols=46 Identities=22% Similarity=0.444 Sum_probs=38.3
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYN 47 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~ 47 (105)
+++.|+.||.|....++.|..++..+..+|.|.....+.+|+..++
T Consensus 48 l~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 48 LEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred HHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 5677899999987666666677888899999999999999988774
No 142
>KOG2193|consensus
Probab=67.05 E-value=1.5 Score=32.20 Aligned_cols=61 Identities=15% Similarity=0.378 Sum_probs=44.6
Q ss_pred HHHHhccCCCeeEEEEEe-CCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 2 IYELFSEFGPLKSAKLHY-DRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~-~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
|..++..||.+..|.... +. ..-..-++|...+.+..||..|++..+....++|.|.....
T Consensus 97 ld~Ll~qyg~ve~~eqvnt~~---etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPdeq 158 (584)
T KOG2193|consen 97 LDSLLAQYGTVENCEQVNTDS---ETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDEQ 158 (584)
T ss_pred HHHHHhccCCHhHhhhhccch---HHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchhh
Confidence 345667899888775432 22 11233478889999999999999999999999999887333
No 143
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=61.03 E-value=13 Score=25.73 Aligned_cols=32 Identities=13% Similarity=0.085 Sum_probs=22.7
Q ss_pred EEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 29 ADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 29 ~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
|||+|.+..+|+.|++.+....- ..+.++.+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCC
Confidence 69999999999999986554332 334555554
No 144
>KOG0804|consensus
Probab=60.23 E-value=23 Score=26.39 Aligned_cols=42 Identities=12% Similarity=0.193 Sum_probs=34.3
Q ss_pred CeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCC
Q psy1928 11 PLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDG 53 (105)
Q Consensus 11 ~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~ 53 (105)
.|.++++++|. .-++-.++|.|.+..+|..-.+.+||+.++.
T Consensus 101 ~I~~irivRd~-~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 101 QISDIRIVRDG-MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred hhheeEEeecC-CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 57888999853 2235578999999999999999999998874
No 145
>KOG0112|consensus
Probab=59.17 E-value=2.4 Score=33.75 Aligned_cols=61 Identities=15% Similarity=0.071 Sum_probs=46.5
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLA 61 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~ 61 (105)
+|+..|..+|.|.+|.|-...-+.-.-++|+.|.+.+.+.+|...+.+..|..-.+++.+.
T Consensus 388 eiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 388 EIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 4678899999999998876653344568999999999999988888887776545555544
No 146
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=55.08 E-value=38 Score=20.85 Aligned_cols=10 Identities=20% Similarity=0.042 Sum_probs=4.2
Q ss_pred HHHHHHHHHh
Q psy1928 37 SDAIKAMKQY 46 (105)
Q Consensus 37 ~~a~~ai~~l 46 (105)
.+.+.|..++
T Consensus 84 ~~~e~A~~Al 93 (144)
T PLN03134 84 NDEGAATAAI 93 (144)
T ss_pred CCHHHHHHHH
Confidence 3344444443
No 147
>COG4907 Predicted membrane protein [Function unknown]
Probab=51.56 E-value=20 Score=26.96 Aligned_cols=12 Identities=25% Similarity=0.368 Sum_probs=5.8
Q ss_pred HHHHHHHHHhCC
Q psy1928 37 SDAIKAMKQYNG 48 (105)
Q Consensus 37 ~~a~~ai~~l~~ 48 (105)
+++.+|++.++.
T Consensus 526 dkVvkam~~~~~ 537 (595)
T COG4907 526 DKVVKAMRKALD 537 (595)
T ss_pred HHHHHHHHHhCc
Confidence 445555554443
No 148
>KOG2591|consensus
Probab=50.86 E-value=17 Score=27.81 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=23.3
Q ss_pred EEEEeCCHHHHHHHHHHhCC--cccCCeeEEEE
Q psy1928 29 ADLIYERRSDAIKAMKQYNG--VPLDGRPMQIQ 59 (105)
Q Consensus 29 ~fv~f~~~~~a~~ai~~l~~--~~i~~~~i~V~ 59 (105)
=||+|.+..+|+.|.+.|.. ++|.+++|..+
T Consensus 215 WyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 215 WYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 47999999999999887743 45667766444
No 149
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=41.35 E-value=78 Score=22.33 Aligned_cols=58 Identities=16% Similarity=0.325 Sum_probs=37.5
Q ss_pred HhccCCCeeEEEEEeCC--------CCCcccEEEEEeCCHHHHHH----HHHHhCC--cccCCeeEEEEEee
Q psy1928 5 LFSEFGPLKSAKLHYDR--------SGRSLGTADLIYERRSDAIK----AMKQYNG--VPLDGRPMQIQLAA 62 (105)
Q Consensus 5 ~f~~~G~i~~~~i~~~~--------~~~~~g~~fv~f~~~~~a~~----ai~~l~~--~~i~~~~i~V~~~~ 62 (105)
.|-+||.|++|+++.+. ..+......+.|.+.+.+-. .+..|.. ..+....|.|.+..
T Consensus 35 ~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 35 KFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTKLKSESLTLSFVS 106 (309)
T ss_pred HhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEE
Confidence 45689999999987654 23345778899988776543 2222322 24556778777765
No 150
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=40.15 E-value=52 Score=18.22 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=20.7
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCc
Q psy1928 25 SLGTADLIYERRSDAIKAMKQYNGV 49 (105)
Q Consensus 25 ~~g~~fv~f~~~~~a~~ai~~l~~~ 49 (105)
.+||.||+=.+..++..|+..+...
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTE
T ss_pred CceEEEEEeCCHHHHHHHHhcccce
Confidence 6899999999999999998876543
No 151
>KOG4210|consensus
Probab=40.07 E-value=19 Score=25.05 Aligned_cols=52 Identities=23% Similarity=0.170 Sum_probs=34.8
Q ss_pred HhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeE
Q psy1928 5 LFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPM 56 (105)
Q Consensus 5 ~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i 56 (105)
++..+|......+.... +..+++++.+.|...+.+..|+.......+....+
T Consensus 108 ~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~ 160 (285)
T KOG4210|consen 108 FSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKG 160 (285)
T ss_pred cchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccc
Confidence 44455655544444433 66678999999999999999998644445554443
No 152
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=38.63 E-value=69 Score=19.10 Aligned_cols=41 Identities=27% Similarity=0.415 Sum_probs=22.4
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeC-CHHHHHHHHH
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYE-RRSDAIKAMK 44 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~-~~~~a~~ai~ 44 (105)
|.+.|..|..+ .+..+.++. ...++++|.|. +-.....|+.
T Consensus 34 l~~~l~~f~p~-kv~~l~~~~-gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 34 LLDKLAEFNPL-KVKPLYGKQ-GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp HHHHHHH---S-EEEEEEETT-EEEEEEEEE--SSHHHHHHHHH
T ss_pred HHHHHHhcCCc-eeEECcCCC-CCcEEEEEEECCChHHHHHHHH
Confidence 55667777654 355555443 34689999998 5555666665
No 153
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=33.28 E-value=82 Score=16.77 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=18.7
Q ss_pred EEEEEeCCHHHHHHHHHHhCCccc
Q psy1928 28 TADLIYERRSDAIKAMKQYNGVPL 51 (105)
Q Consensus 28 ~~fv~f~~~~~a~~ai~~l~~~~i 51 (105)
+.++.|.+..+|.+|-+.|....+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 678999999999888777765443
No 154
>COG4907 Predicted membrane protein [Function unknown]
Probab=33.12 E-value=60 Score=24.52 Aligned_cols=10 Identities=20% Similarity=0.142 Sum_probs=4.6
Q ss_pred HHHHHHHhCC
Q psy1928 39 AIKAMKQYNG 48 (105)
Q Consensus 39 a~~ai~~l~~ 48 (105)
+++.+++|..
T Consensus 525 ~dkVvkam~~ 534 (595)
T COG4907 525 SDKVVKAMRK 534 (595)
T ss_pred HHHHHHHHHH
Confidence 3445554443
No 155
>KOG0129|consensus
Probab=32.92 E-value=1.2e+02 Score=23.05 Aligned_cols=45 Identities=16% Similarity=0.258 Sum_probs=29.6
Q ss_pred HHHHhccCCCeeEEEEEeCC----CCCccc---EEEEEeCCHHHHHHHHHHhC
Q psy1928 2 IYELFSEFGPLKSAKLHYDR----SGRSLG---TADLIYERRSDAIKAMKQYN 47 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~----~~~~~g---~~fv~f~~~~~a~~ai~~l~ 47 (105)
|...|..||.+ .++++... ...++| |+|+.|.+...++.-|.++.
T Consensus 276 i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 276 INASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred HHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 55678888864 34444322 122456 99999999888887776553
No 156
>KOG4483|consensus
Probab=32.29 E-value=79 Score=23.45 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=28.8
Q ss_pred CHHHHhccCCCe-eEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHH
Q psy1928 1 MIYELFSEFGPL-KSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQ 45 (105)
Q Consensus 1 ~l~~~f~~~G~i-~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~ 45 (105)
||...|..|+.- ..|.++.+ -++|..|.+...|..||..
T Consensus 407 Dll~~f~~yq~kgfdIkWvDd------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 407 DLLKAFETYQNKGFDIKWVDD------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred HHHHHHHHhhcCCceeEEeec------ceeEEeecchHHHHHHhhc
Confidence 466778887643 45666655 3899999999999888763
No 157
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=29.83 E-value=1.1e+02 Score=17.42 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=20.9
Q ss_pred EEEEeCCHHHHHHHHHHh-CCcccCCeeEEEEEe
Q psy1928 29 ADLIYERRSDAIKAMKQY-NGVPLDGRPMQIQLA 61 (105)
Q Consensus 29 ~fv~f~~~~~a~~ai~~l-~~~~i~~~~i~V~~~ 61 (105)
|+|+|.+..-|++.+..- +...+++..+.|+..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE
Confidence 578999988888887632 223455555555433
No 158
>KOG2318|consensus
Probab=29.66 E-value=94 Score=24.14 Aligned_cols=36 Identities=8% Similarity=0.191 Sum_probs=28.8
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCcccCC--eeEEEEEee
Q psy1928 27 GTADLIYERRSDAIKAMKQYNGVPLDG--RPMQIQLAA 62 (105)
Q Consensus 27 g~~fv~f~~~~~a~~ai~~l~~~~i~~--~~i~V~~~~ 62 (105)
-||.|+|.+...|......++|..+.. ..+-+++..
T Consensus 269 YyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 269 YYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred EEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 589999999999999999999998874 445555544
No 159
>KOG1232|consensus
Probab=28.76 E-value=1.4e+02 Score=22.22 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=31.0
Q ss_pred CHHHHh----ccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHH
Q psy1928 1 MIYELF----SEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAM 43 (105)
Q Consensus 1 ~l~~~f----~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai 43 (105)
|+..+| ...|-|..+.|...+.-++-..+|+-..+-+++++++
T Consensus 240 dlkhLFIGSEGtlGVvT~vSil~~~kpksvn~af~gi~sf~~v~k~f 286 (511)
T KOG1232|consen 240 DLKHLFIGSEGTLGVVTKVSILAPPKPKSVNVAFIGIESFDDVQKVF 286 (511)
T ss_pred cchhheecCCceeeEEeeEEEeecCCCcceeEEEEccccHHHHHHHH
Confidence 455666 2356677888887777777788999888888877654
No 160
>KOG4019|consensus
Probab=28.62 E-value=1.2e+02 Score=19.84 Aligned_cols=37 Identities=11% Similarity=0.290 Sum_probs=29.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCcccCCe-eEEEEEee
Q psy1928 26 LGTADLIYERRSDAIKAMKQYNGVPLDGR-PMQIQLAA 62 (105)
Q Consensus 26 ~g~~fv~f~~~~~a~~ai~~l~~~~i~~~-~i~V~~~~ 62 (105)
.....|.|.+...|.+|...++...+.++ .++.-++.
T Consensus 51 frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ 88 (193)
T KOG4019|consen 51 FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQ 88 (193)
T ss_pred hceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEcc
Confidence 45677999999999999999999988887 56655554
No 161
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=28.37 E-value=2e+02 Score=21.67 Aligned_cols=40 Identities=8% Similarity=-0.054 Sum_probs=27.1
Q ss_pred cCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q psy1928 8 EFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYN 47 (105)
Q Consensus 8 ~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~ 47 (105)
.+|-|.++.+...+.-......++.|.+.+++..++..+.
T Consensus 216 tlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 216 MLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 4666777766544433334567788999999888887653
No 162
>KOG2891|consensus
Probab=27.39 E-value=40 Score=23.69 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=20.2
Q ss_pred HHHHhccCCCeeEEEEEe-CC-----CCCcccEEEEE
Q psy1928 2 IYELFSEFGPLKSAKLHY-DR-----SGRSLGTADLI 32 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~-~~-----~~~~~g~~fv~ 32 (105)
|...|..||.|..|.|+. |+ +++..|..|-.
T Consensus 178 lr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~g 214 (445)
T KOG2891|consen 178 LRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHG 214 (445)
T ss_pred HHHHHHHhccceecCCcccchhHHHhcCccccceeec
Confidence 567899999999887643 22 55554444433
No 163
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=27.29 E-value=1.1e+02 Score=16.60 Aligned_cols=38 Identities=11% Similarity=0.303 Sum_probs=24.6
Q ss_pred HhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcc
Q psy1928 5 LFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVP 50 (105)
Q Consensus 5 ~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~ 50 (105)
-+.+||.|.++.=- ..|+ +-|-+.++++..++.|....
T Consensus 16 ~L~kfG~i~Y~Skk-------~kYv-vlYvn~~~~e~~~~kl~~l~ 53 (71)
T PF09902_consen 16 QLRKFGDIHYVSKK-------MKYV-VLYVNEEDVEEIIEKLKKLK 53 (71)
T ss_pred hHhhcccEEEEECC-------ccEE-EEEECHHHHHHHHHHHhcCC
Confidence 35689988776311 1244 55667888888888776543
No 164
>PRK02302 hypothetical protein; Provisional
Probab=27.17 E-value=1.3e+02 Score=17.21 Aligned_cols=37 Identities=11% Similarity=0.279 Sum_probs=24.0
Q ss_pred hccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcc
Q psy1928 6 FSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVP 50 (105)
Q Consensus 6 f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~ 50 (105)
+.+||.|.++.=- ..|+ |-|-+.++++..++.|....
T Consensus 23 LrkfG~I~Y~Skk-------~kYv-vlYvn~~~~e~~~~kl~~l~ 59 (89)
T PRK02302 23 LSKYGDIVYHSKR-------SRYL-VLYVNKEDVEQKLEELSKLK 59 (89)
T ss_pred HhhcCcEEEEecc-------ccEE-EEEECHHHHHHHHHHHhcCC
Confidence 5688988775311 1244 45667888888888776543
No 165
>PRK02886 hypothetical protein; Provisional
Probab=25.55 E-value=1.4e+02 Score=17.02 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=24.0
Q ss_pred hccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcc
Q psy1928 6 FSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVP 50 (105)
Q Consensus 6 f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~ 50 (105)
+.+||.|..+.=- ..|+ |-|-+.++++..++.|....
T Consensus 21 LrkyG~I~Y~Skr-------~kYv-vlYvn~~~~e~~~~kl~~l~ 57 (87)
T PRK02886 21 LRKFGNVHYVSKR-------LKYA-VLYCDMEQVEDIMNKLSSLP 57 (87)
T ss_pred HhhcCcEEEEecc-------ccEE-EEEECHHHHHHHHHHHhcCC
Confidence 5688988775311 1244 55667888888888776543
No 166
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=24.57 E-value=28 Score=18.54 Aligned_cols=14 Identities=21% Similarity=0.410 Sum_probs=7.8
Q ss_pred CHHHHhccCCCeeE
Q psy1928 1 MIYELFSEFGPLKS 14 (105)
Q Consensus 1 ~l~~~f~~~G~i~~ 14 (105)
|+.+++++||.+.+
T Consensus 6 DVqQLLK~fG~~IY 19 (62)
T PF06014_consen 6 DVQQLLKKFGIIIY 19 (62)
T ss_dssp HHHHHHHTTS----
T ss_pred HHHHHHHHCCEEEE
Confidence 46778888886654
No 167
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=22.80 E-value=3e+02 Score=21.20 Aligned_cols=40 Identities=13% Similarity=0.067 Sum_probs=26.7
Q ss_pred cCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q psy1928 8 EFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYN 47 (105)
Q Consensus 8 ~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~ 47 (105)
.+|-|.++.+-..+--.....+++.|.+.+++.+++..+.
T Consensus 293 tLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 293 TLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATM 332 (555)
T ss_pred ceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHH
Confidence 4666777766444423334577889999988888776543
No 168
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=22.16 E-value=1.5e+02 Score=17.07 Aligned_cols=22 Identities=5% Similarity=0.030 Sum_probs=18.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHhC
Q psy1928 26 LGTADLIYERRSDAIKAMKQYN 47 (105)
Q Consensus 26 ~g~~fv~f~~~~~a~~ai~~l~ 47 (105)
+.+|.|.|.+.+.+..|...|.
T Consensus 51 ~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 51 RPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred eEeEEEECCChHHHHHHHHHHH
Confidence 5799999999998888876654
No 169
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=21.70 E-value=1.1e+02 Score=18.94 Aligned_cols=24 Identities=13% Similarity=0.029 Sum_probs=20.1
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCC
Q psy1928 25 SLGTADLIYERRSDAIKAMKQYNG 48 (105)
Q Consensus 25 ~~g~~fv~f~~~~~a~~ai~~l~~ 48 (105)
.+||.||+....+++..++..+.+
T Consensus 45 fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 45 LKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred CCcEEEEEEEChHHHHHHHhcCCC
Confidence 589999999988888888876654
No 170
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=20.35 E-value=2.6e+02 Score=18.44 Aligned_cols=47 Identities=15% Similarity=0.207 Sum_probs=27.2
Q ss_pred HHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccC
Q psy1928 4 ELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLD 52 (105)
Q Consensus 4 ~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~ 52 (105)
....+|| |.++ ++.|+ ++.+.-..|+.=.+.+....|+..+....+.
T Consensus 49 k~AkKyG-V~ya-v~kdk~~~~~~~~V~FkA~Da~~i~~af~~~~~~~~~ 96 (204)
T PF12687_consen 49 KEAKKYG-VDYA-VKKDKSTGPGKYDVFFKAKDADVINRAFKEFSAKKLK 96 (204)
T ss_pred HHHHHcC-CceE-EeeccCCCCCcEEEEEEcCcHHHHHHHHHHHHHHhhh
Confidence 3445676 4544 45555 3333444555555777788888877665544
Done!