Query psy1928
Match_columns 105
No_of_seqs 112 out of 1451
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 19:52:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1928.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1928hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.1E-17 3.8E-22 103.6 8.9 65 1-65 55-120 (156)
2 4fxv_A ELAV-like protein 1; RN 99.7 5.5E-17 1.9E-21 93.9 7.9 62 1-62 35-97 (99)
3 3s8s_A Histone-lysine N-methyl 99.7 2E-16 6.8E-21 93.2 8.0 62 1-62 22-84 (110)
4 2dgo_A Cytotoxic granule-assoc 99.7 2E-15 7E-20 88.9 10.8 68 1-68 31-99 (115)
5 3pgw_S U1-70K; protein-RNA com 99.7 9.8E-16 3.3E-20 108.6 10.9 66 1-66 118-184 (437)
6 1whw_A Hypothetical protein ri 99.7 7.2E-16 2.5E-20 88.6 8.3 67 1-67 24-91 (99)
7 3bs9_A Nucleolysin TIA-1 isofo 99.7 8.4E-16 2.9E-20 86.3 8.3 64 1-64 22-86 (87)
8 2dnz_A Probable RNA-binding pr 99.7 1.1E-15 3.9E-20 87.1 8.9 65 1-65 21-86 (95)
9 3md1_A Nuclear and cytoplasmic 99.6 1.2E-15 4E-20 85.0 8.5 65 1-65 17-82 (83)
10 3ex7_B RNA-binding protein 8A; 99.6 4.2E-16 1.4E-20 93.3 7.0 66 1-66 38-104 (126)
11 2cqd_A RNA-binding region cont 99.6 1.1E-15 3.9E-20 90.2 8.4 63 1-64 33-96 (116)
12 1u6f_A Tcubp1, RNA-binding pro 99.6 9.2E-16 3.1E-20 93.2 8.1 64 1-64 58-122 (139)
13 2dgs_A DAZ-associated protein 99.6 1.8E-15 6.2E-20 87.0 8.7 65 1-66 26-91 (99)
14 2cq0_A Eukaryotic translation 99.6 1.6E-15 5.4E-20 87.9 8.3 65 1-65 31-96 (103)
15 2fy1_A RNA-binding motif prote 99.6 1.9E-15 6.6E-20 89.6 8.8 65 1-65 23-87 (116)
16 1x5s_A Cold-inducible RNA-bind 99.6 1.1E-15 3.7E-20 88.3 7.5 66 1-66 28-94 (102)
17 2cpz_A CUG triplet repeat RNA- 99.6 1.8E-15 6.2E-20 89.2 8.4 65 1-65 41-106 (115)
18 2cqb_A Peptidyl-prolyl CIS-tra 99.6 8.2E-16 2.8E-20 88.9 6.7 67 1-67 28-95 (102)
19 2do0_A HnRNP M, heterogeneous 99.6 7.5E-15 2.6E-19 86.3 11.0 62 1-62 31-92 (114)
20 3ns6_A Eukaryotic translation 99.6 2.7E-16 9.3E-21 91.0 4.5 64 1-64 28-93 (100)
21 3p5t_L Cleavage and polyadenyl 99.6 2.8E-16 9.5E-21 89.2 4.2 65 1-65 17-84 (90)
22 2do4_A Squamous cell carcinoma 99.6 3.4E-15 1.1E-19 86.0 8.7 65 1-65 33-97 (100)
23 1p27_B RNA-binding protein 8A; 99.6 2.8E-15 9.6E-20 87.1 8.4 65 1-65 39-104 (106)
24 3q2s_C Cleavage and polyadenyl 99.6 5.8E-16 2E-20 101.6 5.8 62 1-62 84-148 (229)
25 2dnm_A SRP46 splicing factor; 99.6 1.5E-15 5.2E-20 87.9 6.9 64 1-64 29-93 (103)
26 2dnh_A Bruno-like 5, RNA bindi 99.6 4.1E-15 1.4E-19 86.3 8.6 65 1-65 31-98 (105)
27 1x5u_A Splicing factor 3B subu 99.6 2E-15 6.7E-20 87.7 7.1 65 1-65 31-96 (105)
28 1x5t_A Splicing factor 3B subu 99.6 1.9E-15 6.6E-20 86.3 6.6 65 1-65 21-87 (96)
29 2lxi_A RNA-binding protein 10; 99.6 2.9E-16 1E-20 89.4 3.1 66 1-66 17-85 (91)
30 2d9p_A Polyadenylate-binding p 99.6 6.6E-15 2.3E-19 85.2 8.9 64 1-65 31-94 (103)
31 2cqc_A Arginine/serine-rich sp 99.6 3.6E-15 1.2E-19 85.0 7.4 62 1-62 31-93 (95)
32 2e5h_A Zinc finger CCHC-type a 99.6 3.2E-15 1.1E-19 85.1 7.1 62 1-62 32-94 (94)
33 3mdf_A Peptidyl-prolyl CIS-tra 99.6 1.8E-15 6.2E-20 84.6 6.0 62 1-62 23-85 (85)
34 3ulh_A THO complex subunit 4; 99.6 5E-15 1.7E-19 86.2 8.0 62 1-62 45-106 (107)
35 1x4h_A RNA-binding protein 28; 99.6 5.3E-15 1.8E-19 86.5 8.0 65 1-65 31-102 (111)
36 2dng_A Eukaryotic translation 99.6 8.7E-15 3E-19 84.7 8.7 63 1-65 31-94 (103)
37 2cph_A RNA binding motif prote 99.6 5.6E-15 1.9E-19 85.9 7.9 65 1-65 31-98 (107)
38 2x1f_A MRNA 3'-END-processing 99.6 3.9E-15 1.3E-19 85.2 7.0 65 1-65 18-83 (96)
39 2dhg_A TRNA selenocysteine ass 99.6 4.7E-15 1.6E-19 85.9 7.4 65 1-65 25-91 (104)
40 1wi8_A EIF-4B, eukaryotic tran 99.6 5.2E-15 1.8E-19 85.8 7.5 64 1-66 31-96 (104)
41 2ywk_A Putative RNA-binding pr 99.6 5E-15 1.7E-19 84.4 7.3 62 1-62 32-93 (95)
42 2la6_A RNA-binding protein FUS 99.6 5.4E-15 1.9E-19 85.1 7.5 62 1-62 29-99 (99)
43 2dgp_A Bruno-like 4, RNA bindi 99.6 3.7E-15 1.3E-19 86.6 6.7 65 1-65 29-97 (106)
44 1oo0_B CG8781-PA, drosophila Y 99.6 6.2E-15 2.1E-19 86.2 7.5 65 1-65 42-107 (110)
45 2kxn_B Transformer-2 protein h 99.6 3.7E-15 1.3E-19 89.9 6.7 64 1-64 62-126 (129)
46 2lkz_A RNA-binding protein 5; 99.6 1E-15 3.6E-20 88.0 4.0 62 1-62 25-93 (95)
47 2pe8_A Splicing factor 45; RRM 99.6 1E-14 3.4E-19 85.2 8.1 62 1-62 29-92 (105)
48 2cq3_A RNA-binding protein 9; 99.6 2.1E-14 7.1E-19 83.1 9.3 66 1-67 31-96 (103)
49 2cpe_A RNA-binding protein EWS 99.6 5.7E-15 1.9E-19 86.8 6.8 65 1-65 31-104 (113)
50 4f25_A Polyadenylate-binding p 99.6 7.2E-15 2.5E-19 86.9 7.1 62 1-63 21-82 (115)
51 1rk8_A CG8781-PA, CG8781-PA pr 99.6 1.2E-14 4.1E-19 90.8 8.2 65 1-65 88-153 (165)
52 3ucg_A Polyadenylate-binding p 99.6 9E-15 3.1E-19 82.4 7.0 62 1-63 22-84 (89)
53 2jrs_A RNA-binding protein 39; 99.6 6.7E-15 2.3E-19 86.2 6.5 64 1-64 42-106 (108)
54 1jmt_A Splicing factor U2AF 35 99.6 6.2E-15 2.1E-19 86.0 6.2 61 1-61 42-103 (104)
55 3n9u_C Cleavage and polyadenyl 99.6 9.8E-15 3.4E-19 90.7 7.4 62 1-62 71-135 (156)
56 2cqi_A Nucleolysin TIAR; RNA r 99.6 2.3E-14 8E-19 82.9 8.5 64 1-65 31-94 (103)
57 2khc_A Testis-specific RNP-typ 99.6 4.5E-15 1.5E-19 87.8 5.5 62 1-62 56-118 (118)
58 2jwn_A Embryonic polyadenylate 99.6 1.6E-14 5.3E-19 86.2 7.8 61 1-62 52-113 (124)
59 2cpi_A CCR4-NOT transcription 99.6 2.3E-14 7.9E-19 84.2 8.4 62 4-65 37-102 (111)
60 2kn4_A Immunoglobulin G-bindin 99.6 1E-14 3.5E-19 90.2 7.2 64 1-64 86-150 (158)
61 2dh8_A DAZ-associated protein 99.6 1E-14 3.4E-19 84.7 6.6 65 1-66 32-97 (105)
62 1x4b_A Heterogeneous nuclear r 99.6 1.3E-14 4.5E-19 85.6 7.3 64 1-65 43-107 (116)
63 3beg_B Splicing factor, argini 99.6 5.2E-15 1.8E-19 87.5 5.5 56 1-62 32-87 (115)
64 2div_A TRNA selenocysteine ass 99.6 6.8E-15 2.3E-19 84.5 5.8 62 1-62 25-92 (99)
65 2cpf_A RNA binding motif prote 99.6 1.6E-14 5.3E-19 82.9 7.2 65 1-65 21-89 (98)
66 2dgx_A KIAA0430 protein; RRM d 99.5 2.3E-14 7.9E-19 82.1 7.6 62 2-65 30-91 (96)
67 2kt5_A RNA and export factor-b 99.5 3.3E-14 1.1E-18 84.8 8.5 64 1-64 51-114 (124)
68 2dgu_A Heterogeneous nuclear r 99.5 4.2E-14 1.4E-18 81.9 8.6 60 1-67 27-86 (103)
69 2cqg_A TDP-43, TAR DNA-binding 99.5 5.3E-14 1.8E-18 81.3 8.9 65 1-67 31-96 (103)
70 1p1t_A Cleavage stimulation fa 99.5 8.7E-15 3E-19 84.7 5.4 64 1-64 24-88 (104)
71 2dgw_A Probable RNA-binding pr 99.5 3.6E-14 1.2E-18 80.4 7.7 63 1-65 26-88 (91)
72 2rs2_A Musashi-1, RNA-binding 99.5 2.6E-14 8.9E-19 83.8 7.3 65 1-66 41-106 (109)
73 2cqp_A RNA-binding protein 12; 99.5 7.5E-15 2.6E-19 84.2 4.9 62 1-62 31-93 (98)
74 4a8x_A RNA-binding protein wit 99.5 1.2E-14 4E-19 81.7 5.5 62 1-62 20-83 (88)
75 2dgv_A HnRNP M, heterogeneous 99.5 2.9E-14 1E-18 80.8 7.2 64 1-65 24-87 (92)
76 1x4c_A Splicing factor, argini 99.5 6E-14 2E-18 82.0 8.4 59 1-65 31-94 (108)
77 2ek1_A RNA-binding protein 12; 99.5 8.5E-15 2.9E-19 83.5 4.6 62 1-62 31-93 (95)
78 2cq4_A RNA binding motif prote 99.5 1.4E-14 4.8E-19 85.3 5.6 62 1-63 41-103 (114)
79 1x4a_A Splicing factor, argini 99.5 6.8E-14 2.3E-18 81.7 8.3 62 1-64 38-99 (109)
80 2mss_A Protein (musashi1); RNA 99.5 7.4E-15 2.5E-19 80.4 3.8 60 1-61 15-75 (75)
81 1wez_A HnRNP H', FTP-3, hetero 99.5 4.3E-14 1.5E-18 82.0 7.2 60 1-62 31-90 (102)
82 2wbr_A GW182, gawky, LD47780P; 99.5 2.6E-14 8.8E-19 80.8 6.0 57 1-62 23-79 (89)
83 3v4m_A Splicing factor U2AF 65 99.5 3.5E-14 1.2E-18 82.9 6.7 62 1-62 31-95 (105)
84 2nlw_A Eukaryotic translation 99.5 2.1E-14 7.1E-19 83.6 5.4 63 2-65 38-101 (105)
85 3s7r_A Heterogeneous nuclear r 99.5 6.6E-14 2.3E-18 78.6 7.3 60 1-61 27-87 (87)
86 2ki2_A SS-DNA binding protein 99.5 6.1E-15 2.1E-19 83.4 3.0 64 1-65 17-81 (90)
87 2lea_A Serine/arginine-rich sp 99.5 1.8E-14 6.3E-19 87.4 5.0 64 1-64 63-127 (135)
88 1s79_A Lupus LA protein; RRM, 99.5 3.4E-14 1.1E-18 82.7 5.9 61 1-62 27-87 (103)
89 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 3.3E-14 1.1E-18 86.1 6.0 61 1-61 79-140 (140)
90 1uaw_A Mouse-musashi-1; RNP-ty 99.5 2E-14 6.9E-19 78.9 4.5 60 1-61 16-76 (77)
91 2lcw_A RNA-binding protein FUS 99.2 1.6E-15 5.4E-20 89.7 0.0 65 1-65 23-96 (116)
92 1x5o_A RNA binding motif, sing 99.5 8.1E-14 2.8E-18 81.9 7.4 62 1-62 41-110 (114)
93 2fc9_A NCL protein; structure 99.5 7.2E-14 2.5E-18 80.5 6.9 62 1-65 31-92 (101)
94 2j76_E EIF-4B, EIF4B, eukaryot 99.5 3.3E-14 1.1E-18 82.0 5.1 62 1-64 35-98 (100)
95 1x4e_A RNA binding motif, sing 99.5 7.1E-15 2.4E-19 82.3 2.1 61 1-61 21-82 (85)
96 2err_A Ataxin-2-binding protei 99.5 4.5E-14 1.5E-18 82.7 5.5 63 1-64 45-107 (109)
97 2m2b_A RNA-binding protein 10; 99.5 2.3E-14 7.9E-19 86.4 4.1 63 1-64 39-108 (131)
98 1x5p_A Negative elongation fac 99.5 2.3E-13 7.9E-18 77.9 8.2 60 1-65 29-88 (97)
99 2cpy_A RNA-binding protein 12; 99.5 4.8E-14 1.7E-18 83.1 5.4 63 1-64 31-94 (114)
100 2hgn_A Heterogeneous nuclear r 99.5 9.3E-15 3.2E-19 89.3 2.3 63 1-65 62-124 (139)
101 2dnq_A RNA-binding protein 4B; 99.5 2.3E-13 7.9E-18 76.9 7.9 59 1-66 24-82 (90)
102 2qfj_A FBP-interacting repress 99.5 2.4E-13 8.1E-18 87.2 8.9 65 1-65 141-206 (216)
103 1wg5_A Heterogeneous nuclear r 99.5 1.5E-13 5E-18 79.8 7.0 64 1-65 31-95 (104)
104 2dis_A Unnamed protein product 99.5 1.5E-13 5.2E-18 80.1 7.1 65 1-65 24-93 (109)
105 2hvz_A Splicing factor, argini 99.5 7.9E-14 2.7E-18 80.3 5.7 61 1-65 16-76 (101)
106 2db1_A Heterogeneous nuclear r 99.5 7.7E-14 2.6E-18 82.8 5.7 62 1-63 33-97 (118)
107 2fc8_A NCL protein; structure 99.5 3.2E-13 1.1E-17 77.8 8.1 62 1-65 31-93 (102)
108 3ue2_A Poly(U)-binding-splicin 99.5 1.5E-13 5E-18 81.8 6.8 62 1-62 41-107 (118)
109 1x4g_A Nucleolysin TIAR; struc 99.5 2E-13 7E-18 79.7 7.3 61 1-66 41-101 (109)
110 2a3j_A U1 small nuclear ribonu 99.5 1.1E-13 3.9E-18 83.3 6.3 60 2-63 50-109 (127)
111 3md3_A Nuclear and cytoplasmic 99.5 2.7E-13 9.3E-18 83.4 8.0 62 1-62 103-165 (166)
112 2krb_A Eukaryotic translation 99.5 3.2E-14 1.1E-18 79.0 3.3 57 1-58 23-80 (81)
113 2cpj_A Non-POU domain-containi 99.5 2.7E-13 9.2E-18 77.9 7.3 62 1-67 31-92 (99)
114 2f3j_A RNA and export factor b 99.5 1.1E-13 3.8E-18 87.5 5.9 62 1-62 104-165 (177)
115 1x4d_A Matrin 3; structural ge 99.4 1.4E-13 4.7E-18 80.0 5.6 60 1-65 32-93 (102)
116 1l3k_A Heterogeneous nuclear r 99.4 2.7E-13 9.2E-18 85.7 7.5 66 1-67 120-186 (196)
117 1sjq_A Polypyrimidine tract-bi 99.4 1.2E-13 3.9E-18 80.7 5.3 63 1-68 32-96 (105)
118 2dgt_A RNA-binding protein 30; 99.4 4.2E-13 1.4E-17 76.1 7.5 58 1-65 26-83 (92)
119 2dit_A HIV TAT specific factor 99.4 6.4E-13 2.2E-17 78.1 8.3 62 1-65 42-103 (112)
120 2g4b_A Splicing factor U2AF 65 99.4 2.9E-13 9.8E-18 84.0 7.2 62 1-62 110-172 (172)
121 1why_A Hypothetical protein ri 99.4 2.9E-13 9.8E-18 77.5 6.5 59 1-64 33-93 (97)
122 2jvr_A Nucleolar protein 3; RN 99.4 9.5E-14 3.3E-18 81.8 4.5 62 1-65 44-106 (111)
123 2hgl_A HNRPF protein, heteroge 99.4 1.1E-13 3.6E-18 84.3 4.8 62 1-63 60-124 (136)
124 2dnn_A RNA-binding protein 12; 99.4 3.2E-13 1.1E-17 79.3 6.6 61 1-63 32-92 (109)
125 2cpx_A Hypothetical protein FL 99.4 4.8E-14 1.6E-18 82.9 2.8 65 1-65 41-106 (115)
126 1wex_A Hypothetical protein (r 99.4 5.7E-13 2E-17 77.6 7.4 61 1-66 31-93 (104)
127 2yh0_A Splicing factor U2AF 65 99.4 4.7E-13 1.6E-17 84.8 7.4 65 1-65 130-195 (198)
128 2j8a_A Histone-lysine N-methyl 99.4 2E-13 6.8E-18 82.2 5.3 62 1-62 22-94 (136)
129 3r27_A HnRNP L, heterogeneous 99.4 4.3E-13 1.5E-17 77.6 6.5 60 1-65 37-98 (100)
130 1wel_A RNA-binding protein 12; 99.4 6.7E-14 2.3E-18 83.6 3.1 62 1-63 41-103 (124)
131 1wf1_A RNA-binding protein RAL 99.4 5E-13 1.7E-17 78.1 6.6 55 1-62 44-98 (110)
132 2ad9_A Polypyrimidine tract-bi 99.4 5.2E-13 1.8E-17 79.6 6.7 63 1-68 47-111 (119)
133 2kvi_A Nuclear polyadenylated 99.4 6E-13 2E-17 76.1 6.6 58 1-65 27-84 (96)
134 2cq1_A PTB-like protein L; RRM 99.4 1.5E-12 5.2E-17 75.5 8.3 62 1-67 31-94 (101)
135 2dnp_A RNA-binding protein 14; 99.4 8.3E-13 2.8E-17 74.6 6.8 58 1-65 25-82 (90)
136 1iqt_A AUF1, heterogeneous nuc 99.4 6.8E-14 2.3E-18 76.4 2.1 60 1-61 15-75 (75)
137 2jvo_A Nucleolar protein 3; nu 99.4 6E-13 2.1E-17 77.8 6.3 58 1-65 47-104 (108)
138 1fxl_A Paraneoplastic encephal 99.4 1.3E-12 4.5E-17 80.4 8.1 63 1-63 18-81 (167)
139 2cjk_A Nuclear polyadenylated 99.4 2.9E-13 1E-17 83.6 5.1 63 1-64 103-166 (167)
140 1whx_A Hypothetical protein ri 99.4 9E-13 3.1E-17 77.4 7.0 58 1-63 26-83 (111)
141 2bz2_A Negative elongation fac 99.4 7.5E-13 2.6E-17 79.0 6.5 60 1-65 53-112 (121)
142 3md3_A Nuclear and cytoplasmic 99.4 2.4E-12 8.1E-17 79.1 8.9 64 1-64 16-79 (166)
143 1b7f_A Protein (SXL-lethal pro 99.4 1.4E-12 4.7E-17 80.5 7.8 61 1-61 105-168 (168)
144 2ytc_A PRE-mRNA-splicing facto 99.4 6.5E-13 2.2E-17 74.1 5.7 57 1-62 28-85 (85)
145 3s6e_A RNA-binding protein 39; 99.4 6.8E-13 2.3E-17 78.5 6.1 59 1-62 33-91 (114)
146 4f02_A Polyadenylate-binding p 99.4 6.9E-13 2.4E-17 85.6 6.6 62 1-63 119-180 (213)
147 3lqv_A PRE-mRNA branch site pr 99.4 1.1E-12 3.6E-17 77.2 6.8 61 1-63 24-84 (115)
148 4f02_A Polyadenylate-binding p 99.4 1.9E-12 6.4E-17 83.5 8.3 62 1-62 31-93 (213)
149 3nmr_A Cugbp ELAV-like family 99.4 1.6E-12 5.5E-17 80.6 7.7 61 1-61 111-174 (175)
150 2xs2_A Deleted in azoospermia- 99.4 6.9E-13 2.3E-17 76.5 5.5 62 1-64 25-86 (102)
151 2e5j_A Methenyltetrahydrofolat 99.4 7.7E-13 2.6E-17 75.7 5.6 60 1-64 35-94 (97)
152 3zzy_A Polypyrimidine tract-bi 99.4 1.8E-12 6E-17 78.3 7.4 60 1-64 44-106 (130)
153 1sjr_A Polypyrimidine tract-bi 99.4 1.2E-12 4.1E-17 81.8 6.7 61 1-64 62-124 (164)
154 2cq2_A Hypothetical protein LO 99.4 7E-13 2.4E-17 78.4 5.4 60 1-65 43-107 (114)
155 1x4f_A Matrin 3; structural ge 99.4 8.5E-13 2.9E-17 77.9 5.7 59 1-64 42-102 (112)
156 2lmi_A GRSF-1, G-rich sequence 99.4 1.8E-13 6.3E-18 79.8 2.7 62 1-63 27-91 (107)
157 2la4_A Nuclear and cytoplasmic 99.4 5.6E-13 1.9E-17 76.7 4.6 58 1-63 43-100 (101)
158 2i2y_A Fusion protein consists 99.4 9.7E-13 3.3E-17 80.8 5.9 60 1-64 89-148 (150)
159 2cpd_A Apobec-1 stimulating pr 99.4 3.2E-12 1.1E-16 73.3 7.7 58 1-65 31-90 (99)
160 2e5g_A U6 snRNA-specific termi 99.4 1.8E-12 6E-17 73.8 6.5 59 1-65 24-83 (94)
161 2xnq_A Nuclear polyadenylated 99.4 2.7E-12 9.2E-17 73.6 7.2 56 1-63 39-94 (97)
162 1fxl_A Paraneoplastic encephal 99.4 2.7E-12 9.2E-17 79.0 7.7 61 1-61 104-167 (167)
163 1b7f_A Protein (SXL-lethal pro 99.4 1.3E-12 4.3E-17 80.7 6.2 64 1-64 19-83 (168)
164 2cqh_A IGF-II mRNA-binding pro 99.4 1.7E-12 5.9E-17 73.6 6.0 59 1-65 24-84 (93)
165 1fj7_A Nucleolin RBD1, protein 99.4 4.6E-14 1.6E-18 81.3 -0.7 62 1-64 33-95 (101)
166 2e44_A Insulin-like growth fac 99.4 1.5E-12 5.1E-17 74.2 5.6 61 1-65 31-93 (96)
167 1nu4_A U1A RNA binding domain; 99.4 5.1E-13 1.7E-17 76.3 3.7 61 2-64 29-89 (97)
168 2e5i_A Heterogeneous nuclear r 99.3 3.9E-12 1.3E-16 76.3 7.5 59 1-64 41-102 (124)
169 3smz_A Protein raver-1, ribonu 99.3 3.2E-12 1.1E-16 85.3 7.8 65 1-65 201-265 (284)
170 3egn_A RNA-binding protein 40; 99.3 8.5E-13 2.9E-17 80.4 4.5 64 1-64 61-130 (143)
171 2d9o_A DNAJ (HSP40) homolog, s 99.3 5.6E-12 1.9E-16 73.0 7.5 59 1-65 33-91 (100)
172 2dha_A FLJ20171 protein; RRM d 99.3 6.7E-13 2.3E-17 79.5 3.7 62 1-63 39-104 (123)
173 1fjc_A Nucleolin RBD2, protein 99.3 8.1E-13 2.8E-17 75.3 3.9 60 1-64 32-91 (96)
174 3tyt_A Heterogeneous nuclear r 99.3 4.7E-12 1.6E-16 81.6 7.2 59 1-63 21-79 (205)
175 2qfj_A FBP-interacting repress 99.3 3.4E-12 1.2E-16 81.7 6.4 62 1-62 44-106 (216)
176 1l3k_A Heterogeneous nuclear r 99.3 9E-12 3.1E-16 78.7 7.7 63 1-64 29-92 (196)
177 2ghp_A U4/U6 snRNA-associated 99.3 4.3E-12 1.5E-16 85.0 6.3 63 1-64 227-291 (292)
178 3u1l_A PRE-mRNA-splicing facto 99.3 4.9E-12 1.7E-16 83.4 6.2 60 1-65 159-230 (240)
179 2voo_A Lupus LA protein; RNA-b 99.3 1E-11 3.5E-16 79.4 7.2 62 1-63 125-186 (193)
180 2diu_A KIAA0430 protein; struc 99.3 6.3E-12 2.2E-16 71.7 5.5 53 2-63 30-83 (96)
181 2hgm_A HNRPF protein, heteroge 99.3 1.7E-12 5.7E-17 78.1 3.2 61 1-63 58-120 (126)
182 1wg1_A KIAA1579 protein, homol 99.3 7.6E-12 2.6E-16 70.3 5.5 58 1-64 21-78 (88)
183 1fje_B Nucleolin RBD12, protei 99.3 1.1E-11 3.8E-16 77.1 6.1 60 1-64 115-174 (175)
184 3smz_A Protein raver-1, ribonu 99.2 3.9E-11 1.3E-15 80.0 8.5 65 1-65 111-176 (284)
185 3pgw_A U1-A; protein-RNA compl 99.2 3.9E-11 1.3E-15 79.9 8.0 60 2-63 30-89 (282)
186 2dnr_A Synaptojanin-1; RRM dom 99.2 5.3E-11 1.8E-15 67.3 5.7 59 1-67 31-89 (91)
187 3nmr_A Cugbp ELAV-like family 99.2 7.2E-11 2.5E-15 73.1 6.9 62 1-62 19-86 (175)
188 3pgw_A U1-A; protein-RNA compl 99.2 7.4E-11 2.5E-15 78.6 7.2 58 1-62 223-281 (282)
189 2dnl_A Cytoplasmic polyadenyla 99.2 8.3E-11 2.9E-15 69.1 6.3 56 1-59 24-83 (114)
190 2hzc_A Splicing factor U2AF 65 99.2 5.4E-11 1.8E-15 66.4 5.0 54 1-60 22-86 (87)
191 2ghp_A U4/U6 snRNA-associated 99.1 6.3E-11 2.2E-15 79.2 5.3 65 1-65 133-198 (292)
192 2adc_A Polypyrimidine tract-bi 99.1 7E-11 2.4E-15 76.9 5.1 59 1-63 51-109 (229)
193 3sde_A Paraspeckle component 1 99.1 1.6E-10 5.4E-15 76.6 6.7 64 1-64 112-179 (261)
194 3dxb_A Thioredoxin N-terminall 99.1 1.9E-10 6.6E-15 74.5 6.9 62 1-62 145-211 (222)
195 2cjk_A Nuclear polyadenylated 99.1 8E-11 2.7E-15 72.5 4.8 60 1-62 19-79 (167)
196 3d2w_A TAR DNA-binding protein 99.1 2.1E-10 7.1E-15 64.7 5.5 57 1-65 27-85 (89)
197 1wf0_A TDP-43, TAR DNA-binding 99.1 5.3E-11 1.8E-15 66.7 3.0 59 1-65 21-79 (88)
198 1qm9_A Polypyrimidine tract-bi 99.1 9.4E-11 3.2E-15 74.3 4.2 59 1-63 20-78 (198)
199 2adc_A Polypyrimidine tract-bi 99.0 4.2E-10 1.4E-14 73.2 6.2 59 1-63 167-227 (229)
200 1qm9_A Polypyrimidine tract-bi 99.0 2.5E-10 8.6E-15 72.3 4.9 59 1-63 136-196 (198)
201 3tyt_A Heterogeneous nuclear r 99.0 3.3E-10 1.1E-14 72.9 5.3 60 1-61 139-204 (205)
202 3sde_A Paraspeckle component 1 99.0 7.6E-10 2.6E-14 73.3 6.3 57 1-62 38-94 (261)
203 1ufw_A Synaptojanin 2; RNP dom 98.9 1.8E-09 6.2E-14 61.4 4.3 53 2-62 41-93 (95)
204 3tht_A Alkylated DNA repair pr 98.9 2.3E-09 8E-14 73.9 5.3 56 1-61 36-96 (345)
205 1fje_B Nucleolin RBD12, protei 98.9 2E-10 6.8E-15 71.4 -0.4 62 1-64 29-91 (175)
206 2g4b_A Splicing factor U2AF 65 98.8 7.3E-09 2.5E-13 63.9 5.8 57 1-63 20-87 (172)
207 2yh0_A Splicing factor U2AF 65 98.8 9.4E-09 3.2E-13 64.7 5.5 58 1-64 20-88 (198)
208 1owx_A Lupus LA protein, SS-B, 98.5 2E-07 6.8E-12 55.4 6.0 57 1-62 35-94 (121)
209 2l9w_A U4/U6 snRNA-associated- 97.7 0.00013 4.3E-09 42.5 5.7 54 2-60 38-96 (117)
210 1wwh_A Nucleoporin 35, nucleop 97.2 0.0016 5.5E-08 38.3 6.2 54 2-61 40-94 (119)
211 1wey_A Calcipressin 1; structu 96.9 0.0024 8.2E-08 36.7 5.3 57 2-63 27-83 (104)
212 2kn4_A Immunoglobulin G-bindin 96.6 0.0032 1.1E-07 38.0 4.4 34 15-49 3-36 (158)
213 1whv_A Poly(A)-specific ribonu 96.2 0.0078 2.7E-07 34.2 4.0 39 1-46 31-69 (100)
214 3ctr_A Poly(A)-specific ribonu 96.0 0.0086 2.9E-07 34.1 3.6 40 1-47 21-60 (101)
215 3p3d_A Nucleoporin 53; structu 95.9 0.0062 2.1E-07 36.4 2.9 60 2-62 23-97 (132)
216 2i2y_A Fusion protein consists 95.8 0.0029 1E-07 38.0 1.2 39 23-62 10-49 (150)
217 3pq1_A Poly(A) RNA polymerase; 89.2 0.17 5.9E-06 36.2 1.9 40 1-44 68-107 (464)
218 2dhx_A Poly (ADP-ribose) polym 89.2 2 6.7E-05 24.5 6.1 53 2-62 25-82 (104)
219 2g0c_A ATP-dependent RNA helic 83.2 1.4 4.6E-05 23.1 3.1 34 27-61 41-74 (76)
220 3d45_A Poly(A)-specific ribonu 80.3 2.9 9.8E-05 30.2 4.8 40 1-47 455-494 (507)
221 2cu1_A Mitogen-activated prote 61.5 20 0.00067 20.3 5.4 51 8-66 40-90 (103)
222 1uw4_A UPF3X; nonsense mediate 58.0 21 0.00073 19.5 6.8 50 4-53 20-72 (91)
223 3lpe_A Putative transcription 42.1 23 0.00079 19.2 2.7 24 25-48 49-72 (92)
224 1wvf_A 4-cresol dehydrogenase 41.7 36 0.0012 24.4 4.3 43 2-44 218-262 (520)
225 4bby_A Alkyldihydroxyacetoneph 41.5 54 0.0018 24.4 5.2 46 1-46 359-408 (658)
226 1ytr_A Bacteriocin plantaricin 32.1 14 0.00047 14.9 0.5 9 2-10 17-25 (26)
227 2l08_A Regulator of nonsense t 31.1 40 0.0014 18.8 2.4 28 26-53 53-80 (97)
228 3p8b_B Transcription antitermi 23.8 63 0.0022 19.0 2.6 25 25-49 42-66 (152)
229 2npt_B Mitogen-activated prote 23.6 1E+02 0.0036 17.1 3.5 45 8-60 52-96 (100)
230 1e8g_A Vanillyl-alcohol oxidas 22.7 88 0.003 22.7 3.6 37 8-44 258-294 (560)
231 2nn4_A Hypothetical protein YQ 21.5 17 0.00058 19.2 -0.3 14 1-14 7-20 (72)
232 3pm9_A Putative oxidoreductase 20.9 1.9E+02 0.0066 20.5 5.0 39 8-46 213-251 (476)
233 3h7h_B Transcription elongatio 20.5 76 0.0026 17.8 2.4 25 25-49 50-74 (106)
No 1
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.74 E-value=1.1e-17 Score=103.65 Aligned_cols=65 Identities=34% Similarity=0.468 Sum_probs=60.9
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|.++.|+|+++....
T Consensus 55 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 120 (156)
T 1h2v_Z 55 QIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK 120 (156)
T ss_dssp HHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCC
T ss_pred HHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 488999999999999999998 89999999999999999999999999999999999999998443
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.71 E-value=5.5e-17 Score=93.88 Aligned_cols=62 Identities=34% Similarity=0.531 Sum_probs=59.4
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|++||.|.++.++.++ ++.+++||||+|.+.++|++|++.||+..+.++.|+|++++
T Consensus 35 ~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 35 ELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp HHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 488999999999999999998 89999999999999999999999999999999999999986
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=93.19 Aligned_cols=62 Identities=15% Similarity=0.345 Sum_probs=59.5
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|++||.|.++.|++++ +++++|||||+|.+.++|++||+.||+..+.++.|+|+++.
T Consensus 22 ~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 22 FLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp HHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred HHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 488999999999999999998 89999999999999999999999999999999999999986
No 4
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.66 E-value=2e-15 Score=88.95 Aligned_cols=68 Identities=26% Similarity=0.348 Sum_probs=62.4
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccCCCC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVSVLE 68 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~~~~ 68 (105)
+|+++|+.||.|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..+.++.|.|+++.......
T Consensus 31 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 31 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAP 99 (115)
T ss_dssp HHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCCS
T ss_pred HHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCCCC
Confidence 488999999999999999997 89999999999999999999999999999999999999998555443
No 5
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.66 E-value=9.8e-16 Score=108.60 Aligned_cols=66 Identities=29% Similarity=0.519 Sum_probs=61.3
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccCC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVSV 66 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~~ 66 (105)
+|.++|++||.|..|.|+.++ ++++++||||+|.+.++|++||..||+..|.++.|.|.++.....
T Consensus 118 ~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 118 KLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred HHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCC
Confidence 488999999999999999997 999999999999999999999999999999999999999985443
No 6
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=7.2e-16 Score=88.65 Aligned_cols=67 Identities=22% Similarity=0.332 Sum_probs=61.8
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccCCC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVSVL 67 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~~~ 67 (105)
+|+++|+.||.|..|.++.++ ++.+++||||+|.+.++|++|++.||+..+.++.|.|+++...+..
T Consensus 24 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 91 (99)
T 1whw_A 24 DLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEA 91 (99)
T ss_dssp HHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCSTT
T ss_pred HHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCccc
Confidence 488999999999999999998 9999999999999999999999999999999999999999855443
No 7
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.65 E-value=8.4e-16 Score=86.31 Aligned_cols=64 Identities=28% Similarity=0.398 Sum_probs=59.4
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|+.||.|..+.++.++ ++.+++||||+|.+.++|++|++.||+..+.++.|.|+++..+
T Consensus 22 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 22 AIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp HHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred HHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 488999999999999999997 9999999999999999999999999999999999999998754
No 8
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-15 Score=87.13 Aligned_cols=65 Identities=31% Similarity=0.519 Sum_probs=60.4
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|++||.|..+.++.++ ++++++||||+|.+.++|++|++.||+..+.++.|+|+++.++.
T Consensus 21 ~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 86 (95)
T 2dnz_A 21 MLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERL 86 (95)
T ss_dssp HHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCC
T ss_pred HHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccccc
Confidence 488999999999999999988 89999999999999999999999999999999999999987433
No 9
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.65 E-value=1.2e-15 Score=85.04 Aligned_cols=65 Identities=29% Similarity=0.508 Sum_probs=60.7
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.||.|..+.++.++ ++.+++||||+|.+.++|++|++.||+..+.++.|.|+++.+++
T Consensus 17 ~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 82 (83)
T 3md1_A 17 TLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKLE 82 (83)
T ss_dssp HHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred HHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcCC
Confidence 478999999999999999997 89999999999999999999999999999999999999988543
No 10
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.65 E-value=4.2e-16 Score=93.30 Aligned_cols=66 Identities=30% Similarity=0.446 Sum_probs=61.2
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccCC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVSV 66 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~~ 66 (105)
+|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|.++.|.|+++.....
T Consensus 38 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 104 (126)
T 3ex7_B 38 DIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGP 104 (126)
T ss_dssp HHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSS
T ss_pred HHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCC
Confidence 488999999999999999998 999999999999999999999999999999999999999985443
No 11
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.1e-15 Score=90.24 Aligned_cols=63 Identities=30% Similarity=0.389 Sum_probs=58.6
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|+.||.|..|.|+.++ ++++++||||+|.+.++|++||+.+++ .+.++.|+|+++...
T Consensus 33 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 33 SLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLG 96 (116)
T ss_dssp HHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTT
T ss_pred HHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccC
Confidence 488999999999999999988 899999999999999999999999998 899999999998743
No 12
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.64 E-value=9.2e-16 Score=93.20 Aligned_cols=64 Identities=28% Similarity=0.479 Sum_probs=60.0
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|+.||.|..|.|+.++ ++++++||||+|.+.++|++||+.||+..+.++.|+|+++...
T Consensus 58 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 122 (139)
T 1u6f_A 58 QLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASG 122 (139)
T ss_dssp HHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCC
T ss_pred HHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 488999999999999999988 8899999999999999999999999999999999999998844
No 13
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.8e-15 Score=87.01 Aligned_cols=65 Identities=18% Similarity=0.304 Sum_probs=59.9
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccCC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVSV 66 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~~ 66 (105)
+|+++|+.||.|..|.|+.++ ++.+++||||+|.+.++|++||+ |++..+.++.|.|+++.+...
T Consensus 26 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~~ 91 (99)
T 2dgs_A 26 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDS 91 (99)
T ss_dssp HHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCCC
T ss_pred HHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCCcc
Confidence 488999999999999999988 89999999999999999999999 999999999999999885443
No 14
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.6e-15 Score=87.85 Aligned_cols=65 Identities=29% Similarity=0.451 Sum_probs=60.5
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.||.|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..+.++.|+|+++....
T Consensus 31 ~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 96 (103)
T 2cq0_A 31 DLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPST 96 (103)
T ss_dssp HHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCC
T ss_pred HHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCC
Confidence 478999999999999999997 89999999999999999999999999999999999999987443
No 15
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.63 E-value=1.9e-15 Score=89.58 Aligned_cols=65 Identities=32% Similarity=0.527 Sum_probs=60.4
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|++||.|..|.|+.++++.+++||||+|.+.++|++|++.||+..+.++.|+|+++....
T Consensus 23 ~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 87 (116)
T 2fy1_A 23 MLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPS 87 (116)
T ss_dssp HHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSS
T ss_pred HHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 48899999999999999998888999999999999999999999999999999999999988443
No 16
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=88.33 Aligned_cols=66 Identities=30% Similarity=0.465 Sum_probs=61.0
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccCC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVSV 66 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~~ 66 (105)
+|+++|+.||.|..+.|+.++ ++.+++||||+|.+.++|++|++.||+..+.++.|+|+++.....
T Consensus 28 ~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 94 (102)
T 1x5s_A 28 SLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSD 94 (102)
T ss_dssp HHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCC
T ss_pred HHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 488999999999999999987 888999999999999999999999999999999999999985443
No 17
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.63 E-value=1.8e-15 Score=89.23 Aligned_cols=65 Identities=23% Similarity=0.361 Sum_probs=60.9
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.||.|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|.++.|+|+++.+..
T Consensus 41 ~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 106 (115)
T 2cpz_A 41 DLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKN 106 (115)
T ss_dssp HHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSC
T ss_pred HHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCC
Confidence 488999999999999999998 89999999999999999999999999999999999999988444
No 18
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8.2e-16 Score=88.86 Aligned_cols=67 Identities=24% Similarity=0.377 Sum_probs=61.3
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccCCC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVSVL 67 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~~~ 67 (105)
+|+++|+.||.|..|.|+.++ ++.+++||||+|.+.++|++|++.||+..+.++.|.|+++.+....
T Consensus 28 ~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 95 (102)
T 2cqb_A 28 VLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIK 95 (102)
T ss_dssp HHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred HHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCCC
Confidence 488999999999999999987 8999999999999999999999999999999999999998854433
No 19
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=7.5e-15 Score=86.32 Aligned_cols=62 Identities=29% Similarity=0.530 Sum_probs=59.2
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|+.||.|..|.|+.++++++++||||+|.+.++|++||+.||+..+.++.|.|+++.
T Consensus 31 ~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 31 KLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp HHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred HHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 48899999999999999998888899999999999999999999999999999999999987
No 20
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.63 E-value=2.7e-16 Score=90.96 Aligned_cols=64 Identities=25% Similarity=0.343 Sum_probs=59.9
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCC-eeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDG-RPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~-~~i~V~~~~~~ 64 (105)
+|+++|++||.|.+|.|+.++ +++++|||||+|.+.++|++||+.||+..+.+ +.|+|.++.+.
T Consensus 28 ~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 28 ALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKDV 93 (100)
T ss_dssp HHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHHH
T ss_pred HHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECchh
Confidence 478999999999999999998 79999999999999999999999999999999 99999998743
No 21
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.62 E-value=2.8e-16 Score=89.17 Aligned_cols=65 Identities=18% Similarity=0.198 Sum_probs=57.6
Q ss_pred CHHHHhccCC--CeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFG--PLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G--~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.|| .|.++.++.++ +++++|||||+|.+.++|++|++.||+..+.++.|+|+++.+.+
T Consensus 17 ~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~ 84 (90)
T 3p5t_L 17 DLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLE 84 (90)
T ss_dssp HHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC----
T ss_pred HHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCc
Confidence 4889999999 99999999998 99999999999999999999999999999999999999988443
No 22
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3.4e-15 Score=86.02 Aligned_cols=65 Identities=22% Similarity=0.397 Sum_probs=60.5
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.||.|..+.++.++++++++||||+|.+.++|++|++.||+..+.++.|+|+++.+.+
T Consensus 33 ~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 97 (100)
T 2do4_A 33 ELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGP 97 (100)
T ss_dssp HHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCS
T ss_pred HHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 48899999999999999998888999999999999999999999999999999999999987443
No 23
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.8e-15 Score=87.14 Aligned_cols=65 Identities=31% Similarity=0.462 Sum_probs=60.7
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.||.|..|.++.++ ++.+++||||+|.+.++|++|++.||+..+.++.|.|+++...+
T Consensus 39 ~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 104 (106)
T 1p27_B 39 DIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRG 104 (106)
T ss_dssp HHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred HHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCCC
Confidence 488999999999999999998 89999999999999999999999999999999999999988543
No 24
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.62 E-value=5.8e-16 Score=101.57 Aligned_cols=62 Identities=19% Similarity=0.189 Sum_probs=59.4
Q ss_pred CHHHHhccCC--CeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFG--PLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G--~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|++|| .|..|.|+.++ ++++++||||+|.+.++|++||+.||+..|.++.|+|.++.
T Consensus 84 ~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~ 148 (229)
T 3q2s_C 84 DLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVN 148 (229)
T ss_dssp HHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECC
T ss_pred HHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECC
Confidence 4899999999 99999999998 99999999999999999999999999999999999999986
No 25
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=87.90 Aligned_cols=64 Identities=23% Similarity=0.377 Sum_probs=60.0
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|+.||.|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..+.++.|.|+++...
T Consensus 29 ~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dnm_A 29 SLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYG 93 (103)
T ss_dssp HHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSC
T ss_pred HHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcC
Confidence 488999999999999999988 8999999999999999999999999999999999999999843
No 26
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.61 E-value=4.1e-15 Score=86.30 Aligned_cols=65 Identities=18% Similarity=0.301 Sum_probs=60.1
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCC---eeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDG---RPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~---~~i~V~~~~~~~ 65 (105)
+|+++|+.||.|..|.|+.++++.+++||||+|.+.++|++||+.||+..+.+ +.|.|+++....
T Consensus 31 ~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 31 DVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDK 98 (105)
T ss_dssp HHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSC
T ss_pred HHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCc
Confidence 48899999999999999998888999999999999999999999999999988 999999998443
No 27
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2e-15 Score=87.66 Aligned_cols=65 Identities=26% Similarity=0.471 Sum_probs=60.6
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|++||.|..|.++.++ ++.+++||||+|.+.++|++|++.||+..+.++.|+|+++....
T Consensus 31 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 96 (105)
T 1x5u_A 31 LLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHN 96 (105)
T ss_dssp HHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTS
T ss_pred HHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 488999999999999999998 89999999999999999999999999999999999999987443
No 28
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.9e-15 Score=86.33 Aligned_cols=65 Identities=28% Similarity=0.432 Sum_probs=60.2
Q ss_pred CHHHHhccCCCeeEE-EEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSA-KLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~-~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.||.|..+ .++.++ ++.+++||||+|.+.++|++|++.||+..+.++.|.|+++.+.+
T Consensus 21 ~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 87 (96)
T 1x5t_A 21 LLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKD 87 (96)
T ss_dssp HHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCC
T ss_pred HHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccC
Confidence 488999999999999 999986 89999999999999999999999999999999999999987443
No 29
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.60 E-value=2.9e-16 Score=89.45 Aligned_cols=66 Identities=18% Similarity=0.263 Sum_probs=59.0
Q ss_pred CHHHHhccCC-CeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhC-CcccCCeeEEEEEeeccCC
Q psy1928 1 MIYELFSEFG-PLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYN-GVPLDGRPMQIQLAADVSV 66 (105)
Q Consensus 1 ~l~~~f~~~G-~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~-~~~i~~~~i~V~~~~~~~~ 66 (105)
+|+++|++|| .|.+|.|++++ ++.+++||||+|.+.++|++||+.++ +..+.++.|.|+++.+++.
T Consensus 17 ~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~ 85 (91)
T 2lxi_A 17 DIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPK 85 (91)
T ss_dssp HHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCCC
T ss_pred HHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCCC
Confidence 5889999999 79999999998 89999999999999999999999874 5679999999999885543
No 30
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=6.6e-15 Score=85.19 Aligned_cols=64 Identities=30% Similarity=0.474 Sum_probs=59.6
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.||.|..|.|+.+ ++.+++||||+|.+.++|++|++.||+..+.++.|.|+++....
T Consensus 31 ~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2d9p_A 31 RLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 94 (103)
T ss_dssp HHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCC
T ss_pred HHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccc
Confidence 48899999999999999998 88899999999999999999999999999999999999998443
No 31
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.6e-15 Score=84.97 Aligned_cols=62 Identities=35% Similarity=0.594 Sum_probs=58.8
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|++||.|..+.++.++ ++.+++||||+|.+.++|++|++.||+..+.++.|+|++++
T Consensus 31 ~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 31 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp HHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred HHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 488999999999999999998 88999999999999999999999999999999999999876
No 32
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.2e-15 Score=85.11 Aligned_cols=62 Identities=23% Similarity=0.435 Sum_probs=58.3
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|++||.|..+.++.++ ++.+++||||+|.+.++|++|++.||+..+.++.|+|++++
T Consensus 32 ~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 32 DLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp HHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred HHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 488999999999999999988 78999999999999999999999999999999999999874
No 33
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.60 E-value=1.8e-15 Score=84.58 Aligned_cols=62 Identities=26% Similarity=0.398 Sum_probs=58.1
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|++||.|..+.++.++ ++.+++||||+|.+.++|++|++.||+..+.++.|+|++++
T Consensus 23 ~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 23 VLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp HHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 488999999999999999886 88899999999999999999999999999999999999874
No 34
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.60 E-value=5e-15 Score=86.20 Aligned_cols=62 Identities=74% Similarity=1.172 Sum_probs=58.9
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|++||.|..|.|+.++++.+++||||+|.+.++|++|++.||+..+.++.|+|++++
T Consensus 45 ~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 45 DIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 48899999999999999998889999999999999999999999999999999999999875
No 35
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=5.3e-15 Score=86.53 Aligned_cols=65 Identities=26% Similarity=0.413 Sum_probs=60.5
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhC------CcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYN------GVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~------~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.||.|..|.|+.++ ++.+++||||+|.+.++|++||..|| +..+.++.|.|+++.+..
T Consensus 31 ~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 31 ALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRD 102 (111)
T ss_dssp HHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCC
T ss_pred HHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCc
Confidence 488999999999999999998 89999999999999999999999999 999999999999988544
No 36
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.59 E-value=8.7e-15 Score=84.73 Aligned_cols=63 Identities=19% Similarity=0.412 Sum_probs=58.2
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.|| |..|.|+.++ ++++++||||+|.+.++|++|| .||+..|.++.|.|+++....
T Consensus 31 ~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dng_A 31 DIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGRK 94 (103)
T ss_dssp HHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCCC
T ss_pred HHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCCC
Confidence 4889999997 9999999998 8999999999999999999999 899999999999999988444
No 37
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=5.6e-15 Score=85.91 Aligned_cols=65 Identities=31% Similarity=0.416 Sum_probs=60.4
Q ss_pred CHHHHhccCCCeeEEEEEeC-C-CCCcccEEEEEeCCHHHHHHHHHHh-CCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYD-R-SGRSLGTADLIYERRSDAIKAMKQY-NGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~-~-~~~~~g~~fv~f~~~~~a~~ai~~l-~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.||.|..|.|+.+ + ++.+++||||+|.+.++|++||+.| |+..+.++.|+|+++....
T Consensus 31 ~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~ 98 (107)
T 2cph_A 31 EIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEV 98 (107)
T ss_dssp HHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCC
T ss_pred HHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCC
Confidence 48899999999999999998 5 8999999999999999999999999 9999999999999998544
No 38
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.59 E-value=3.9e-15 Score=85.22 Aligned_cols=65 Identities=26% Similarity=0.447 Sum_probs=60.4
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.||.|..+.++.++ ++.+++||||+|.+.++|++|++.||+..+.++.|.|+++.+..
T Consensus 18 ~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 83 (96)
T 2x1f_A 18 QILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSD 83 (96)
T ss_dssp HHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSS
T ss_pred HHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCC
Confidence 488999999999999999987 89999999999999999999999999999999999999988443
No 39
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=4.7e-15 Score=85.90 Aligned_cols=65 Identities=22% Similarity=0.466 Sum_probs=60.1
Q ss_pred CHHHHhcc-CCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcc-cCCeeEEEEEeeccC
Q psy1928 1 MIYELFSE-FGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVP-LDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~-~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~-i~~~~i~V~~~~~~~ 65 (105)
+|+++|+. ||.|..|.|+.++++.+++||||+|.+.++|++||+.||+.. +.++.|.|+++....
T Consensus 25 ~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~ 91 (104)
T 2dhg_A 25 MLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKA 91 (104)
T ss_dssp HHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCC
T ss_pred HHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCC
Confidence 48899999 999999999998888899999999999999999999999999 999999999987444
No 40
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.2e-15 Score=85.82 Aligned_cols=64 Identities=17% Similarity=0.290 Sum_probs=58.6
Q ss_pred CHHHHhccCCCeeEEEEEeCC-C-CCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccCC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-S-GRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVSV 66 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~-~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~~ 66 (105)
+|+++|+.|| |..|.|+.++ + +.+++||||+|.+.++|++|| .||+..+.++.|.|+++.....
T Consensus 31 ~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 31 SIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQD 96 (104)
T ss_dssp HHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCCCC
T ss_pred HHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCCCC
Confidence 4889999999 9999999988 5 899999999999999999999 8999999999999999885443
No 41
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.59 E-value=5e-15 Score=84.42 Aligned_cols=62 Identities=27% Similarity=0.523 Sum_probs=58.7
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|+.||.|..|.|+.++++.+++||||+|.+.++|++|++.||+..+.++.|.|++++
T Consensus 32 ~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 32 ILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp HHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred HHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 48899999999999999998888899999999999999999999999999999999999876
No 42
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.59 E-value=5.4e-15 Score=85.05 Aligned_cols=62 Identities=24% Similarity=0.535 Sum_probs=58.4
Q ss_pred CHHHHhccCCCeeE--------EEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKS--------AKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~--------~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|++||.|.. +.++.++ ++.+++||||+|.+.++|++|++.||+..+.++.|+|++++
T Consensus 29 ~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 29 SVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp HHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 48899999999999 9999997 89999999999999999999999999999999999999874
No 43
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.59 E-value=3.7e-15 Score=86.64 Aligned_cols=65 Identities=32% Similarity=0.416 Sum_probs=59.8
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCccc---CCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPL---DGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i---~~~~i~V~~~~~~~ 65 (105)
+|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++|++.||+..+ .++.|.|+++....
T Consensus 29 ~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 29 DLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSES 97 (106)
T ss_dssp HHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCS
T ss_pred HHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCccc
Confidence 488999999999999999988 899999999999999999999999999887 88999999988444
No 44
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.58 E-value=6.2e-15 Score=86.23 Aligned_cols=65 Identities=31% Similarity=0.470 Sum_probs=60.6
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.||.|..+.++.++ ++.+++||||+|.+.++|++|+..||+..+.++.|.|+++....
T Consensus 42 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 107 (110)
T 1oo0_B 42 EIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 107 (110)
T ss_dssp HHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEESS
T ss_pred HHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccCC
Confidence 488999999999999999987 89999999999999999999999999999999999999988543
No 45
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.58 E-value=3.7e-15 Score=89.93 Aligned_cols=64 Identities=34% Similarity=0.598 Sum_probs=60.0
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|.++.|+|+++..+
T Consensus 62 ~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~ 126 (129)
T 2kxn_B 62 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITK 126 (129)
T ss_dssp HHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSS
T ss_pred HHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 488999999999999999998 8899999999999999999999999999999999999998743
No 46
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.58 E-value=1e-15 Score=87.97 Aligned_cols=62 Identities=18% Similarity=0.329 Sum_probs=56.7
Q ss_pred CHHHHhccCCC--eeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCc----ccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGP--LKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGV----PLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~--i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~----~i~~~~i~V~~~~ 62 (105)
+|+++|++||. +.+|.+++|+ +++++|||||+|.+.++|++||+.||+. .|++++|.|++++
T Consensus 25 ~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 25 SIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAK 93 (95)
T ss_dssp HHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECC
T ss_pred HHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEcc
Confidence 48899999995 5789999998 8999999999999999999999999986 4889999999986
No 47
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.58 E-value=1e-14 Score=85.24 Aligned_cols=62 Identities=21% Similarity=0.193 Sum_probs=58.0
Q ss_pred CHHHHhccCCCeeEEEEEeCC--CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR--SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~--~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|++||.|.++.|+.++ ++.++|++||+|.+.++|++|+..||+..+.++.|.|.++.
T Consensus 29 dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~ 92 (105)
T 2pe8_A 29 ETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYN 92 (105)
T ss_dssp HHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence 478999999999999999986 46889999999999999999999999999999999999987
No 48
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.1e-14 Score=83.06 Aligned_cols=66 Identities=21% Similarity=0.451 Sum_probs=59.1
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccCCC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVSVL 67 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~~~ 67 (105)
+|+++|+.||.|..|.|+.++.. +++||||+|.+.++|++|+..||+..+.++.|.|+++......
T Consensus 31 ~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 31 DLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMT 96 (103)
T ss_dssp HHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCCC
T ss_pred HHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCCC
Confidence 48899999999999999987643 7899999999999999999999999999999999999855433
No 49
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.7e-15 Score=86.78 Aligned_cols=65 Identities=23% Similarity=0.465 Sum_probs=59.8
Q ss_pred CHHHHhccCCCee--------EEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLK--------SAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~--------~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.||.|. .|.|+.++ ++.+++||||+|.+.++|++||+.||+..+.++.|+|+++....
T Consensus 31 ~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 31 DLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKP 104 (113)
T ss_dssp HHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCC
T ss_pred HHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCC
Confidence 4889999999998 69999987 89999999999999999999999999999999999999988444
No 50
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.57 E-value=7.2e-15 Score=86.87 Aligned_cols=62 Identities=27% Similarity=0.434 Sum_probs=56.9
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
+|+++|+.||.|.+|.|+.++ +.+++||||+|.+.++|++||+.|++..|.++.|.|.++..
T Consensus 21 ~L~~~F~~~G~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 21 ALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp HHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred HHHHHHhccCCEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 589999999999999999875 33789999999999999999999999999999999998874
No 51
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.57 E-value=1.2e-14 Score=90.78 Aligned_cols=65 Identities=31% Similarity=0.470 Sum_probs=60.9
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.||.|..|.|+.++ ++.+++||||+|.+.++|++||..||+..|.++.|.|.++....
T Consensus 88 ~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 153 (165)
T 1rk8_A 88 EIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 153 (165)
T ss_dssp HHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC
T ss_pred HHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 488999999999999999997 99999999999999999999999999999999999999998544
No 52
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.57 E-value=9e-15 Score=82.36 Aligned_cols=62 Identities=15% Similarity=0.288 Sum_probs=58.3
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
+|+++|+.||.|..+.++.++ ++.+++||||+|.+.++|++|+ .||+..+.++.|+|+++++
T Consensus 22 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 22 ELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred HHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 488999999999999999998 8999999999999999999999 8999999999999998863
No 53
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.57 E-value=6.7e-15 Score=86.22 Aligned_cols=64 Identities=34% Similarity=0.578 Sum_probs=59.8
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|+.||.|..+.++.++ ++.+++||||+|.+.++|++|++.|++..+.++.|.|+++.++
T Consensus 42 ~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 42 MLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 106 (108)
T ss_dssp HHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSS
T ss_pred HHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccC
Confidence 478999999999999999987 8899999999999999999999999999999999999998743
No 54
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.56 E-value=6.2e-15 Score=85.99 Aligned_cols=61 Identities=18% Similarity=0.391 Sum_probs=56.2
Q ss_pred CHHHHh-ccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy1928 1 MIYELF-SEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLA 61 (105)
Q Consensus 1 ~l~~~f-~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~ 61 (105)
+|+++| ++||.|.+|.|+.+.+++++||+||+|.+.++|++|+..||+..+.++.|.|.++
T Consensus 42 dl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 42 EVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 366777 9999999999998777789999999999999999999999999999999999876
No 55
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.56 E-value=9.8e-15 Score=90.71 Aligned_cols=62 Identities=19% Similarity=0.374 Sum_probs=59.4
Q ss_pred CHHHHhccCC--CeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFG--PLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G--~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|+.|| .|..|.|+.++ +++++|||||+|.+.++|++||+.||+..|.++.|.|.++.
T Consensus 71 ~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~ 135 (156)
T 3n9u_C 71 QLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPAT 135 (156)
T ss_dssp HHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECC
T ss_pred HHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcC
Confidence 4889999999 99999999998 99999999999999999999999999999999999999986
No 56
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.3e-14 Score=82.86 Aligned_cols=64 Identities=27% Similarity=0.403 Sum_probs=57.7
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.||.|..|.|+.++.. +++||||+|.+.++|++|+..||+..+.++.|+|+++....
T Consensus 31 ~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2cqi_A 31 LILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPS 94 (103)
T ss_dssp HHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTT
T ss_pred HHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCc
Confidence 48899999999999999988633 58999999999999999999999999999999999998543
No 57
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.56 E-value=4.5e-15 Score=87.82 Aligned_cols=62 Identities=24% Similarity=0.335 Sum_probs=58.0
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|++||.|..+.++.++ ++++++|+||+|.+.++|++|++.||+..+.++.|+|++++
T Consensus 56 ~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 56 DLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKK 118 (118)
T ss_dssp HHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred HHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 488999999999999999987 89999999999999999999999999999999999999864
No 58
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.56 E-value=1.6e-14 Score=86.16 Aligned_cols=61 Identities=20% Similarity=0.326 Sum_probs=57.9
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|+.||.|..|.++.++ ++.+++||||+|.+.++|++|+ .||+..+.++.|.|+++.
T Consensus 52 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 52 DLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred HHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 488999999999999999987 8999999999999999999999 799999999999999987
No 59
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=2.3e-14 Score=84.16 Aligned_cols=62 Identities=26% Similarity=0.447 Sum_probs=56.3
Q ss_pred HHhccCCCeeEEEEEeCC-CC---CcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 4 ELFSEFGPLKSAKLHYDR-SG---RSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 4 ~~f~~~G~i~~~~i~~~~-~~---~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
++|++||.|..|.|+.++ ++ .+++||||+|.+.++|++||+.||+..+.++.|+|+++..++
T Consensus 37 ~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 37 EYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp TTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred HHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 899999999999998876 43 456999999999999999999999999999999999998555
No 60
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.56 E-value=1e-14 Score=90.19 Aligned_cols=64 Identities=28% Similarity=0.456 Sum_probs=60.4
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|+.||.|..|.|+.++ ++.+++||||+|.+.++|++||..||+..+.++.|.|+++.+.
T Consensus 86 ~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 86 TLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp HHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred HHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 488999999999999999997 8999999999999999999999999999999999999999844
No 61
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1e-14 Score=84.69 Aligned_cols=65 Identities=15% Similarity=0.257 Sum_probs=59.8
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccCC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVSV 66 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~~ 66 (105)
+|+++|+.||.|..|.|+.++ ++.+++||||+|.+.++|++||+. ++..|.++.|.|+++.++..
T Consensus 32 ~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 32 TLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPRGM 97 (105)
T ss_dssp HHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCSSC
T ss_pred HHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCCCC
Confidence 488999999999999999997 899999999999999999999998 99999999999999875443
No 62
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-14 Score=85.61 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=59.2
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.||.|..|.|+.++ ++.+++||||+|.+.++|++||+. ++..|.++.|.|+++.++.
T Consensus 43 ~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~~ 107 (116)
T 1x4b_A 43 SLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVARE 107 (116)
T ss_dssp HHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSCC
T ss_pred HHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCCc
Confidence 488999999999999999997 899999999999999999999997 9999999999999987544
No 63
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.56 E-value=5.2e-15 Score=87.54 Aligned_cols=56 Identities=16% Similarity=0.215 Sum_probs=49.0
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|++||.|..|.|+.+ +||||+|.+.++|++||+.||+..|.++.|+|.+..
T Consensus 32 ~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 32 DLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp HHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred HHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 58899999999999998764 899999999999999999999999999985444443
No 64
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=6.8e-15 Score=84.51 Aligned_cols=62 Identities=26% Similarity=0.421 Sum_probs=58.6
Q ss_pred CHHHHhccCCCee-EEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCee----EEEEEee
Q psy1928 1 MIYELFSEFGPLK-SAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRP----MQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~-~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~----i~V~~~~ 62 (105)
+|+++|+.||.|. .+.++.++ ++.+++||||+|.+.++|++|++.||+..+.++. |+|.+++
T Consensus 25 ~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~ 92 (99)
T 2div_A 25 FISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYAT 92 (99)
T ss_dssp HHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETT
T ss_pred HHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecC
Confidence 4889999999999 99999998 8999999999999999999999999999999998 9999887
No 65
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.6e-14 Score=82.85 Aligned_cols=65 Identities=26% Similarity=0.515 Sum_probs=58.3
Q ss_pred CHHHHhccCCCeeEEEEEeCCC--C--CcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRS--G--RSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~--~--~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|++||.|..|.++.++. + .+++||||+|.+.++|++|++.||+..+.++.|.|+++....
T Consensus 21 ~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 89 (98)
T 2cpf_A 21 TLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERAT 89 (98)
T ss_dssp HHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSS
T ss_pred HHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCC
Confidence 4889999999999999988652 3 788999999999999999999999999999999999987444
No 66
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.3e-14 Score=82.09 Aligned_cols=62 Identities=24% Similarity=0.278 Sum_probs=55.9
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
|+++|++||.|.+|.|+.++.. ++||||+|.+.++|++||+.||+..+.++.|+|+++.+..
T Consensus 30 l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~ 91 (96)
T 2dgx_A 30 LQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGAS 91 (96)
T ss_dssp HHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSS
T ss_pred HHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 3499999999999999988733 7899999999999999999999999999999999997443
No 67
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.55 E-value=3.3e-14 Score=84.83 Aligned_cols=64 Identities=72% Similarity=1.106 Sum_probs=60.0
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|+.||.|..|.++.++++.+++||||+|.+.++|++|++.||+..+.++.|+|+++...
T Consensus 51 ~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 114 (124)
T 2kt5_A 51 DIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 114 (124)
T ss_dssp HHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCT
T ss_pred HHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence 4889999999999999999888889999999999999999999999999999999999999843
No 68
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.55 E-value=4.2e-14 Score=81.87 Aligned_cols=60 Identities=30% Similarity=0.462 Sum_probs=53.7
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccCCC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVSVL 67 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~~~ 67 (105)
+|+++|++||.|..|.+++ +||||+|.+.++|++||+.||+..+.++.|.|+++.+....
T Consensus 27 ~l~~~F~~~G~i~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 27 ILEKAFSQFGKLERVKKLK-------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp HHHHHHHHHSCEEEEEECS-------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred HHHHHHHhcCCEEEEEEEC-------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 4889999999999998864 59999999999999999999999999999999999854433
No 69
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=5.3e-14 Score=81.35 Aligned_cols=65 Identities=23% Similarity=0.305 Sum_probs=58.6
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccCCC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVSVL 67 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~~~ 67 (105)
+|+++|+.||.|..|.|+.++ ++.+++||||+|.+.++|++||. ++..+.++.|.|+++.+++..
T Consensus 31 ~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cqg_A 31 DLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPNSKQSQ 96 (103)
T ss_dssp HHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCCTTCCC
T ss_pred HHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecCCCCcC
Confidence 488999999999999999998 89999999999999999999998 467899999999999855543
No 70
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=8.7e-15 Score=84.69 Aligned_cols=64 Identities=34% Similarity=0.609 Sum_probs=59.8
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|+.||.|..+.++.++ ++.+++||||+|.+.++|++|++.||+..+.++.|.|+++...
T Consensus 24 ~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 88 (104)
T 1p1t_A 24 QLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE 88 (104)
T ss_dssp HHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred HHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCc
Confidence 488999999999999999987 8999999999999999999999999999999999999998743
No 71
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=3.6e-14 Score=80.35 Aligned_cols=63 Identities=13% Similarity=0.201 Sum_probs=58.6
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.| .|..+.|+.+.++++++||||+|.+.++|++||. ||+..+.++.|.|.++.+.+
T Consensus 26 ~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~~ 88 (91)
T 2dgw_A 26 NVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSGP 88 (91)
T ss_dssp HHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSCC
T ss_pred HHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcCC
Confidence 488999999 9999999998889999999999999999999999 99999999999999988553
No 72
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.54 E-value=2.6e-14 Score=83.76 Aligned_cols=65 Identities=22% Similarity=0.286 Sum_probs=58.9
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccCC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVSV 66 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~~ 66 (105)
+|+++|+.||.|..|.++.++ ++.+++||||+|.+.++|++||..++ ..+.++.|.|+++.+++.
T Consensus 41 ~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 41 GLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVAFPRRA 106 (109)
T ss_dssp HHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEEEECCCCCC
T ss_pred HHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEEEEccCCCC
Confidence 488999999999999999988 89999999999999999999999764 899999999999885543
No 73
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=7.5e-15 Score=84.19 Aligned_cols=62 Identities=21% Similarity=0.355 Sum_probs=57.6
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|+.||.|..+.++.++ ++.+++||||+|.+.++|++||+.||+..+.++.|+|+++.
T Consensus 31 ~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 31 EILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp HHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred HHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 488999999999888777776 89999999999999999999999999999999999999987
No 74
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=81.69 Aligned_cols=62 Identities=29% Similarity=0.469 Sum_probs=57.1
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCC-cccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGR-SLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~-~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|++||.|..+.++.++ ++. +++||||+|.+.++|++|++.||+..+.++.|.|+++.
T Consensus 20 ~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 20 HIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp HHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 478999999999999998877 444 88999999999999999999999999999999999987
No 75
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.53 E-value=2.9e-14 Score=80.75 Aligned_cols=64 Identities=27% Similarity=0.488 Sum_probs=58.3
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.||.|..+.++.+ ++.+++||||+|.+.++|++|++.||+..+.++.|.|+++....
T Consensus 24 ~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 87 (92)
T 2dgv_A 24 MLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNAS 87 (92)
T ss_dssp HHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCS
T ss_pred HHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 48899999999999999874 78889999999999999999999999999999999999987433
No 76
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=6e-14 Score=81.96 Aligned_cols=59 Identities=17% Similarity=0.263 Sum_probs=53.9
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCC-----eeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDG-----RPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~-----~~i~V~~~~~~~ 65 (105)
+|+++|++||.|..|.|+.+ +||||+|.+.++|++||+.||+..|.+ +.|+|+++.++.
T Consensus 31 ~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 31 DLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRS 94 (108)
T ss_dssp HHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCS
T ss_pred HHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCC
Confidence 58899999999999999875 899999999999999999999999999 999999988533
No 77
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.53 E-value=8.5e-15 Score=83.46 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=57.4
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|+.||.|..+.++.++ ++.+++||||+|.+.++|++||+.||+..+.++.|+|+++.
T Consensus 31 ~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 31 EILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp HHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred HHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 488999999999888888877 88999999999999999999999999999999999999875
No 78
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.4e-14 Score=85.26 Aligned_cols=62 Identities=26% Similarity=0.359 Sum_probs=58.4
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
+|+++|+.||.|..|.|+.++ ++.+++||||+|.+.++|++|| .||+..|.++.|.|+++..
T Consensus 41 ~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 41 DLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred HHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 488999999999999999988 7899999999999999999999 8999999999999999873
No 79
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=6.8e-14 Score=81.69 Aligned_cols=62 Identities=19% Similarity=0.292 Sum_probs=55.5
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|++||.|..|.|+. +..+++||||+|.+.++|++||+.||+..|.++.|+|+++...
T Consensus 38 ~l~~~F~~~G~v~~~~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 38 DIEDVFYKYGAIRDIDLKN--RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp HHHHHHGGGSCEEEEEECC--SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred HHHHHHHhcCCeEEEEEEE--CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence 4889999999999998854 4457899999999999999999999999999999999998743
No 80
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.52 E-value=7.4e-15 Score=80.40 Aligned_cols=60 Identities=18% Similarity=0.303 Sum_probs=56.0
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLA 61 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~ 61 (105)
+|+++|++||.|..+.++.++ ++.+++||||+|.+.++|++|++ |++..+.++.|.|+++
T Consensus 15 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 15 DVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp HHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred HHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 478999999999999999988 89999999999999999999998 8999999999999864
No 81
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.3e-14 Score=82.02 Aligned_cols=60 Identities=25% Similarity=0.422 Sum_probs=55.3
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|+.|| +..|.|+.++++++++||||+|.+.++|++||+ +|+..|.++.|+|..+.
T Consensus 31 ~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 31 DIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp HHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred HHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 5889999999 559999998899999999999999999999995 79999999999999877
No 82
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.52 E-value=2.6e-14 Score=80.80 Aligned_cols=57 Identities=25% Similarity=0.239 Sum_probs=53.4
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|.+||.|.++.+.. ++|||||+|.+.++|++|++.||+..+.+++|+|++++
T Consensus 23 ~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 23 TLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp HHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred HHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4889999999999999876 48999999999999999999999999999999999886
No 83
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.52 E-value=3.5e-14 Score=82.90 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=57.1
Q ss_pred CHHHHhccCCCeeEEEEEeCC-C--CCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-S--GRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~--~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
||+++|++||.|.++.|++++ + ..++|++||+|.+.++|++|+..||+..+.++.|.|.+..
T Consensus 31 dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 31 DVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp HHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 478999999999999998876 3 3678999999999999999999999999999999999986
No 84
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.51 E-value=2.1e-14 Score=83.59 Aligned_cols=63 Identities=27% Similarity=0.488 Sum_probs=57.4
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCe-eEEEEEeeccC
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGR-PMQIQLAADVS 65 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~-~i~V~~~~~~~ 65 (105)
|+++|++||.|..|.|+ ..++.+++||||+|.+.++|++||..||+..+.++ .|+|.++.+.+
T Consensus 38 l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 38 IHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDFD 101 (105)
T ss_dssp HHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCCC
T ss_pred HHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchHh
Confidence 88999999999999887 34888999999999999999999999999999998 99999987443
No 85
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.51 E-value=6.6e-14 Score=78.57 Aligned_cols=60 Identities=23% Similarity=0.431 Sum_probs=55.4
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLA 61 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~ 61 (105)
+|+++|++||.|..+.++.++ ++.+++||||+|.+.++|++|++ +++..+.++.|.|+++
T Consensus 27 ~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 27 DLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp HHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred HHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 488999999999999999998 89999999999999999999997 4888899999999874
No 86
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.51 E-value=6.1e-15 Score=83.37 Aligned_cols=64 Identities=27% Similarity=0.420 Sum_probs=57.0
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.||.|..+.++.++ ++.+++||||+|.+.+ |++|+..||+..+.++.|.|+++....
T Consensus 17 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~ 81 (90)
T 2ki2_A 17 QVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKK 81 (90)
T ss_dssp HHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC----
T ss_pred HHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 478899999999999999988 8999999999999999 999999999999999999999988443
No 87
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.51 E-value=1.8e-14 Score=87.44 Aligned_cols=64 Identities=28% Similarity=0.456 Sum_probs=60.0
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|+.||.|..|.|+.++ ++.+++||||+|.+.++|++||..||+..+.++.|+|+++...
T Consensus 63 ~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 63 TLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp HHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred HHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 488999999999999999987 8999999999999999999999999999999999999999843
No 88
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.4e-14 Score=82.69 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=57.3
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|+.||.|.+|.|+.++.+.++|||||+|.+.++|++||. +++..+.++.|.|.++.
T Consensus 27 ~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 27 DIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp HHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred HHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 48899999999999999998888899999999999999999999 89999999999999876
No 89
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.50 E-value=3.3e-14 Score=86.10 Aligned_cols=61 Identities=26% Similarity=0.407 Sum_probs=57.0
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLA 61 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~ 61 (105)
+|+++|++||.|..+.++.++ ++.+++||||+|.+.++|++|++.||+..+.++.|+|+++
T Consensus 79 ~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 79 VLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp HHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred HHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 488999999999999999987 8999999999999999999999999999999999999875
No 90
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=2e-14 Score=78.86 Aligned_cols=60 Identities=23% Similarity=0.338 Sum_probs=56.3
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLA 61 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~ 61 (105)
+|+++|++||.|..+.++.++ ++.+++||||+|.+.++|++|++.++ ..+.++.|.|+++
T Consensus 16 ~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 16 GLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp HHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred HHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 478999999999999999988 89999999999999999999999999 9999999999875
No 91
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.25 E-value=1.6e-15 Score=89.68 Aligned_cols=65 Identities=23% Similarity=0.504 Sum_probs=59.8
Q ss_pred CHHHHhccCCCeeE--------EEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKS--------AKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~--------~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.||.|.. +.++.++ ++.+++||||+|.+.++|++|++.||+..+.++.|.|+++...+
T Consensus 23 ~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 23 SVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRA 96 (116)
Confidence 58899999999988 8899887 88999999999999999999999999999999999999988544
No 92
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=8.1e-14 Score=81.90 Aligned_cols=62 Identities=19% Similarity=0.330 Sum_probs=57.3
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCccc--------CCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPL--------DGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i--------~~~~i~V~~~~ 62 (105)
+|+++|+.||.|..+.|+.++++.+++||||+|.+.++|++|++.||+..+ .+++|.|.++.
T Consensus 41 ~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 41 ELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp HHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECC
T ss_pred HHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccC
Confidence 478999999999999999988889999999999999999999999999999 57779999887
No 93
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=7.2e-14 Score=80.50 Aligned_cols=62 Identities=23% Similarity=0.380 Sum_probs=54.7
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|++||.| .++.+.++++++||||+|.+.++|++||+.||+..+.++.|+|+++....
T Consensus 31 ~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (101)
T 2fc9_A 31 TLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 92 (101)
T ss_dssp HHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCC
T ss_pred HHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCC
Confidence 488999999977 45665688899999999999999999999999999999999999988443
No 94
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.49 E-value=3.3e-14 Score=82.02 Aligned_cols=62 Identities=19% Similarity=0.321 Sum_probs=57.2
Q ss_pred CHHHHhccCCCeeEEEEEeCC--CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR--SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~--~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|+.|| |.++.|+.++ ++++++||||+|.+.++|++|+ .||+..+.++.|.|+++.+.
T Consensus 35 ~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 35 SIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQA 98 (100)
T ss_dssp HHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCCS
T ss_pred HHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccCC
Confidence 4889999999 9999999886 7889999999999999999999 89999999999999998743
No 95
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=7.1e-15 Score=82.27 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=55.7
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLA 61 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~ 61 (105)
+|+++|+.||.|..+.++.++ ++.+++||||+|.+.++|++|++.||+..+.++.|++.+.
T Consensus 21 ~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 21 DLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp HHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred HHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 478899999999999999997 8999999999999999999999999999999988776543
No 96
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.5e-14 Score=82.70 Aligned_cols=63 Identities=21% Similarity=0.435 Sum_probs=57.1
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|++||.|..+.++.++. .+++||||+|.+.++|++|++.||+..+.++.|.|+++..+
T Consensus 45 ~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 45 DLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp HHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred HHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 4889999999999999988753 37899999999999999999999999999999999998743
No 97
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.48 E-value=2.3e-14 Score=86.42 Aligned_cols=63 Identities=16% Similarity=0.303 Sum_probs=58.5
Q ss_pred CHHHHhccCCCeeE--EEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCc----ccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKS--AKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGV----PLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~--~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~----~i~~~~i~V~~~~~~ 64 (105)
+|+++|++||.|.. |.|+.++ +++++|||||+|.+. +|++||..||+. .+.++.|.|+++...
T Consensus 39 ~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 39 SILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGS 108 (131)
T ss_dssp HHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCS
T ss_pred HHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCC
Confidence 48899999999976 9999998 999999999999999 999999999999 999999999998743
No 98
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.3e-13 Score=77.92 Aligned_cols=60 Identities=20% Similarity=0.370 Sum_probs=54.1
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|++||.|..|.|. .+++||||+|.+.++|++||..||+..+.++.|+|+++....
T Consensus 29 ~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 29 LLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp HHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred HHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 488999999999999885 357899999999999999999999999999999999987444
No 99
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.8e-14 Score=83.13 Aligned_cols=63 Identities=17% Similarity=0.275 Sum_probs=58.2
Q ss_pred CHHHHhccCCCe-eEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPL-KSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i-~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|+.||.| ..|.|+.++++++++||||+|.+.++|++||+. |+..|.++.|.|.++...
T Consensus 31 ~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~ 94 (114)
T 2cpy_A 31 DVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTLE 94 (114)
T ss_dssp HHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECHH
T ss_pred HHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCHH
Confidence 488999999999 889999988899999999999999999999997 999999999999999843
No 100
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.48 E-value=9.3e-15 Score=89.32 Aligned_cols=63 Identities=22% Similarity=0.400 Sum_probs=56.9
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.|| |..|.|+.++++++++||||+|.+.++|++|| .+|+..|.++.|+|..+...+
T Consensus 62 dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 62 DIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp HHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred HHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 5899999999 77999998888899999999999999999999 689999999999998877443
No 101
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=2.3e-13 Score=76.88 Aligned_cols=59 Identities=17% Similarity=0.271 Sum_probs=53.5
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccCC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVSV 66 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~~ 66 (105)
+|+++|++||.|..+.++ ++||||+|.+.++|++|++.||+..+.++.|+|+++.....
T Consensus 24 ~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 24 EIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp HHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred HHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 488999999999999887 47999999999999999999999999999999999885443
No 102
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.48 E-value=2.4e-13 Score=87.17 Aligned_cols=65 Identities=28% Similarity=0.399 Sum_probs=60.9
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|++||.|..+.++.++ ++.+++||||+|.+.++|++|++.||+..|.++.|.|.++...+
T Consensus 141 ~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 141 DIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred HHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 488999999999999999997 89999999999999999999999999999999999999998443
No 103
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.5e-13 Score=79.82 Aligned_cols=64 Identities=25% Similarity=0.287 Sum_probs=57.8
Q ss_pred CHHHHhccCCCeeE-EEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKS-AKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~-~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.||.|.. |.|+.+.++++++||||+|.+.++|++||.. ++..+.++.|.|.++...+
T Consensus 31 ~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 31 EIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRAE 95 (104)
T ss_dssp HHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTTT
T ss_pred HHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHHH
Confidence 58899999999987 8888888899999999999999999999997 9999999999999887443
No 104
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.5e-13 Score=80.08 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=58.1
Q ss_pred CHHHHhccCCC-eeEEEEE-eCC-CCCcccEEEEEeCCHHHHHHHHHHhC--CcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGP-LKSAKLH-YDR-SGRSLGTADLIYERRSDAIKAMKQYN--GVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~-i~~~~i~-~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~--~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.||. |..+.++ .++ ++.+++||||+|.+.++|++|+..|+ +..+.++.|+|+++.+..
T Consensus 24 ~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~ 93 (109)
T 2dis_A 24 EILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEI 93 (109)
T ss_dssp HHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSC
T ss_pred HHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCC
Confidence 47899999998 9999988 666 78899999999999999999999996 589999999999998444
No 105
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=7.9e-14 Score=80.32 Aligned_cols=61 Identities=23% Similarity=0.404 Sum_probs=55.9
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|++||.|..+.++.+ +++||||+|.+.++|++|++.||+..+.++.|.|+++...+
T Consensus 16 ~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 16 ELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp HHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred HHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 48899999999999999876 67999999999999999999999999999999999998544
No 106
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.47 E-value=7.7e-14 Score=82.83 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=57.9
Q ss_pred CHHHHhccCCC---eeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGP---LKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~---i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
+|+++|+.||. |..|.|+.++.+++++||||+|.+.++|++||+ +|+..|.++.|+|.++..
T Consensus 33 ~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~ 97 (118)
T 2db1_A 33 DVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSHR 97 (118)
T ss_dssp HHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEECH
T ss_pred HHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCH
Confidence 48899999998 899999998889999999999999999999999 999999999999999873
No 107
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=3.2e-13 Score=77.80 Aligned_cols=62 Identities=23% Similarity=0.280 Sum_probs=54.3
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.| ..+.++.++ ++.+++||||+|.+.++|++||+.||+..|.++.|+|+++.+..
T Consensus 31 ~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 93 (102)
T 2fc8_A 31 TLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 93 (102)
T ss_dssp HHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred HHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCC
Confidence 477888866 467788887 89999999999999999999999999999999999999988433
No 108
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.47 E-value=1.5e-13 Score=81.84 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=56.7
Q ss_pred CHHHHhccCCCeeEEEEEeCC-C----CCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-S----GRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~----~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
||++.|++||.|.+|.|+.++ + ++++|++||+|.+.++|++|+..||+..+.++.|.|.++.
T Consensus 41 dl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 41 EVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp HHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence 478999999999999998875 2 4577999999999999999999999999999999999986
No 109
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2e-13 Score=79.68 Aligned_cols=61 Identities=16% Similarity=0.333 Sum_probs=55.6
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccCC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVSV 66 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~~ 66 (105)
+|+++|+.||.|..|.++.+ ++||||+|.+.++|++|+..|++..+.++.|+|.++...+.
T Consensus 41 ~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 41 LMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp HHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred HHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 47899999999999999875 78999999999999999999999999999999999985443
No 110
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=83.29 Aligned_cols=60 Identities=22% Similarity=0.456 Sum_probs=54.1
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
|+++|++||.|..|.+. .++.++|||||+|.+.++|+.|+..||+..+.++.|+|.++..
T Consensus 50 L~~~F~~~G~I~~v~i~--~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~ 109 (127)
T 2a3j_A 50 LYALASSQGDILDIVVD--LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSET 109 (127)
T ss_dssp HHHHHHHHSCEEEEEEC--CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCC
T ss_pred HHHHhccCCCeEEEEec--cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccC
Confidence 56799999999988764 3677899999999999999999999999999999999999873
No 111
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.46 E-value=2.7e-13 Score=83.43 Aligned_cols=62 Identities=31% Similarity=0.519 Sum_probs=58.8
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|+.||.|..+.++.++ ++.++++|||+|.+.++|++|+..||+..+.++.|.|.+++
T Consensus 103 ~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 103 TLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred HHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 478999999999999999997 89999999999999999999999999999999999999875
No 112
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.46 E-value=3.2e-14 Score=79.03 Aligned_cols=57 Identities=26% Similarity=0.500 Sum_probs=51.6
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCe-eEEE
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGR-PMQI 58 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~-~i~V 58 (105)
+|+++|++||.|..+.++ ..++++++||||+|.+.++|++|++.||+..+.++ .|+|
T Consensus 23 ~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 23 VIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred HHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 478999999999999877 34888999999999999999999999999999998 8765
No 113
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=2.7e-13 Score=77.87 Aligned_cols=62 Identities=24% Similarity=0.401 Sum_probs=55.6
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccCCC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVSVL 67 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~~~ 67 (105)
+|+++|++||.|..+.++.+ ++||||+|.+.++|++|++.||+..+.++.|.|+++.+....
T Consensus 31 ~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 92 (99)
T 2cpj_A 31 EMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASL 92 (99)
T ss_dssp HHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSCC
T ss_pred HHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCCC
Confidence 48899999999999998864 689999999999999999999999999999999998854433
No 114
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.45 E-value=1.1e-13 Score=87.49 Aligned_cols=62 Identities=74% Similarity=1.147 Sum_probs=59.0
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|+.||.|..|.|+.++++.+++||||+|.+.++|++||+.||+..|.++.|+|+++.
T Consensus 104 ~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 104 DIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp HHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred HHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 48899999999999999988888899999999999999999999999999999999999987
No 115
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.4e-13 Score=80.03 Aligned_cols=60 Identities=18% Similarity=0.330 Sum_probs=52.9
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCc--ccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGV--PLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~--~i~~~~i~V~~~~~~~ 65 (105)
+|+++|++||.|.+|.|+.+ ++||||+|.+.++|++||+.|++. .+.+++|.|+++....
T Consensus 32 dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 93 (102)
T 1x4d_A 32 QLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYK 93 (102)
T ss_dssp HHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCT
T ss_pred HHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCC
Confidence 48899999999999998865 589999999999999999998864 5899999999998433
No 116
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.45 E-value=2.7e-13 Score=85.73 Aligned_cols=66 Identities=18% Similarity=0.341 Sum_probs=57.6
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccCCC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVSVL 67 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~~~ 67 (105)
+|+++|+.||.|..+.++.++ ++.+++||||+|.+.++|++|+.. ++..+.++.|.|.++.+++..
T Consensus 120 ~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp HHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred HHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 488999999999999999998 899999999999999999999986 899999999999998855543
No 117
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.2e-13 Score=80.72 Aligned_cols=63 Identities=17% Similarity=0.204 Sum_probs=55.2
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCC--cccCCeeEEEEEeeccCCCC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNG--VPLDGRPMQIQLAADVSVLE 68 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~--~~i~~~~i~V~~~~~~~~~~ 68 (105)
+|+++|++||.|.+|.|+.+ ++||||+|.+.++|++||+.|++ ..+.+++|.|.++..++...
T Consensus 32 dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~~ 96 (105)
T 1sjq_A 32 EVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKT 96 (105)
T ss_dssp HHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCCC
T ss_pred HHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCCc
Confidence 58899999999999999875 69999999999999999998864 68999999999998555443
No 118
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=4.2e-13 Score=76.07 Aligned_cols=58 Identities=24% Similarity=0.431 Sum_probs=52.8
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|++||.|..+.+++ +||||+|.+.++|++|++.||+..+.++.|+|+++....
T Consensus 26 ~l~~~F~~~G~v~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 26 ELRAKFEEYGPVIECDIVK-------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp HHHHHHHTTSCCCEEEECS-------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred HHHHHHHhcCCeEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 4889999999999998874 499999999999999999999999999999999998443
No 119
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=6.4e-13 Score=78.08 Aligned_cols=62 Identities=21% Similarity=0.328 Sum_probs=54.6
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|++||.|..|.| .++ .+++|+||+|.+.++|++|+..||+..+.++.|.|.++.+..
T Consensus 42 ~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 42 DLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp HHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCC
T ss_pred HHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 47889999999999965 443 378999999999999999999999999999999999987544
No 120
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.44 E-value=2.9e-13 Score=84.03 Aligned_cols=62 Identities=32% Similarity=0.418 Sum_probs=58.7
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|++||.|..+.++.++ ++.++++|||+|.+.++|++|++.||+..+.++.|.|+++.
T Consensus 110 ~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 110 QVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 478999999999999999997 99999999999999999999999999999999999999873
No 121
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=2.9e-13 Score=77.48 Aligned_cols=59 Identities=22% Similarity=0.333 Sum_probs=53.8
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccC--CeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLD--GRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~--~~~i~V~~~~~~ 64 (105)
+|+++|++||.|..+.++.+ ++||||+|.+.++|++|++.||+..+. ++.|.|+++.+.
T Consensus 33 ~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 33 ALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp HHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred HHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 48899999999999988754 689999999999999999999999999 999999998854
No 122
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.44 E-value=9.5e-14 Score=81.84 Aligned_cols=62 Identities=13% Similarity=0.187 Sum_probs=53.8
Q ss_pred CHHHHhccCC-CeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFG-PLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G-~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.|| .|..+.++.. .+++||||+|.+.++|++||+.||+..+.++.|+|+++...+
T Consensus 44 dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 44 DLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp HHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred HHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 5889999999 8999887532 468999999999999999999999999999999999987443
No 123
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.44 E-value=1.1e-13 Score=84.32 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=57.9
Q ss_pred CHHHHhccCCC---eeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGP---LKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~---i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
+|+++|+.||. |..|.|+.++.++++|||||+|.+.++|++||+ ||+..|.++.|+|.++..
T Consensus 60 dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~ 124 (136)
T 2hgl_A 60 DVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHR 124 (136)
T ss_dssp HHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCH
T ss_pred HHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECCh
Confidence 58899999999 889999998889999999999999999999999 999999999999998863
No 124
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=3.2e-13 Score=79.34 Aligned_cols=61 Identities=18% Similarity=0.310 Sum_probs=56.2
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
||+++|+.| .|..|.|+.+++++++|||||+|.+.++|++|| .+|+..|.++.|.|..+..
T Consensus 32 dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 32 DVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred HHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 589999999 899999999888899999999999999999999 5899999999999988763
No 125
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=4.8e-14 Score=82.95 Aligned_cols=65 Identities=23% Similarity=0.394 Sum_probs=54.4
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.||.|..+.+..+. ++.+++||||+|.+.++|++||+.||+..+.++.|.|+++....
T Consensus 41 ~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 106 (115)
T 2cpx_A 41 DLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKK 106 (115)
T ss_dssp HHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCS
T ss_pred HHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCC
Confidence 478999999998443322222 77889999999999999999999999999999999999998444
No 126
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=5.7e-13 Score=77.61 Aligned_cols=61 Identities=13% Similarity=0.123 Sum_probs=53.1
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCc--ccCCeeEEEEEeeccCC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGV--PLDGRPMQIQLAADVSV 66 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~--~i~~~~i~V~~~~~~~~ 66 (105)
+|+++|++||.|..|.++.+ ++||||+|.+.++|++|++.|++. .+.++.|.|+++..+..
T Consensus 31 ~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 31 DLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRI 93 (104)
T ss_dssp HHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSC
T ss_pred HHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCccc
Confidence 48899999999999988764 689999999999999999988654 58999999999985443
No 127
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.43 E-value=4.7e-13 Score=84.75 Aligned_cols=65 Identities=31% Similarity=0.373 Sum_probs=60.7
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|++||.|..+.++.++ ++.+++||||+|.+.++|++|++.||+..+.++.|.|+++.+..
T Consensus 130 ~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 130 QVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp HHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred HHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 478999999999999999998 99999999999999999999999999999999999999988543
No 128
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.43 E-value=2e-13 Score=82.15 Aligned_cols=62 Identities=21% Similarity=0.305 Sum_probs=54.6
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCC----HHH----HHHHHH--HhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYER----RSD----AIKAMK--QYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~----~~~----a~~ai~--~l~~~~i~~~~i~V~~~~ 62 (105)
+|+.+|+.||+|.++.++.|+ |+.++||+||+|.+ .++ |.+|+. .|++..|+++.|+|.+.+
T Consensus 22 ~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 22 SIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp HHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECC
T ss_pred HHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECc
Confidence 478999999999999999999 99999999999996 333 788888 789999999999999765
No 129
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.42 E-value=4.3e-13 Score=77.64 Aligned_cols=60 Identities=18% Similarity=0.242 Sum_probs=53.2
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcc--cCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVP--LDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~--i~~~~i~V~~~~~~~ 65 (105)
+|+++|++||.|.++.++.. +++|||+|.+.++|++|++.|++.. +.+++|.|++++.++
T Consensus 37 ~L~~lF~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 37 DLVEALQEFGPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp HHHHHHGGGSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred HHHHHHhccCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 48899999999999988753 6899999999999999999999875 789999999998543
No 130
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=6.7e-14 Score=83.60 Aligned_cols=62 Identities=11% Similarity=0.188 Sum_probs=55.2
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
+|+++|+.||.|..+.++.+. ++++++||||+|.+.++|++||. ||+..|.++.|.|.++..
T Consensus 41 ~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 41 HVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp HHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECH
T ss_pred HHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCH
Confidence 488999999999875444444 99999999999999999999999 999999999999999874
No 131
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.42 E-value=5e-13 Score=78.13 Aligned_cols=55 Identities=25% Similarity=0.395 Sum_probs=51.5
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|++||.|..|.+ +++||||+|.+.++|++|++.||+..+.++.|+|+++.
T Consensus 44 ~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 44 DVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp HHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred HHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 48899999999999988 36899999999999999999999999999999999987
No 132
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=5.2e-13 Score=79.57 Aligned_cols=63 Identities=17% Similarity=0.204 Sum_probs=55.4
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCC--cccCCeeEEEEEeeccCCCC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNG--VPLDGRPMQIQLAADVSVLE 68 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~--~~i~~~~i~V~~~~~~~~~~ 68 (105)
+|+++|++||.|.+|.|+.+ ++||||+|.+.++|++|++.|++ ..+.+++|.|.++..++...
T Consensus 47 dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 47 EVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKT 111 (119)
T ss_dssp HHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCCC
T ss_pred HHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCCCc
Confidence 48899999999999999875 79999999999999999998874 67999999999998555443
No 133
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.41 E-value=6e-13 Score=76.09 Aligned_cols=58 Identities=9% Similarity=0.216 Sum_probs=52.9
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|++||.|..+.+. ++||||+|.+.++|++|++.||+..+.++.|.|+++....
T Consensus 27 ~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 27 DLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp HHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred HHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 488999999999999884 5899999999999999999999999999999999998443
No 134
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.5e-12 Score=75.46 Aligned_cols=62 Identities=19% Similarity=0.186 Sum_probs=53.9
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHh--CCcccCCeeEEEEEeeccCCC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQY--NGVPLDGRPMQIQLAADVSVL 67 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l--~~~~i~~~~i~V~~~~~~~~~ 67 (105)
+|+++|+.||.|..+.++.+ ++||||+|.+.++|++|++.| ++..+.+++|.|.++...+..
T Consensus 31 ~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 31 EVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELK 94 (101)
T ss_dssp HHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSCC
T ss_pred HHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccCc
Confidence 48899999999999988764 799999999999999999977 467799999999999855443
No 135
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=8.3e-13 Score=74.56 Aligned_cols=58 Identities=22% Similarity=0.329 Sum_probs=52.7
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.||.|..+.+++ +||||+|.+.++|++|++.||+..+.++.|.|+++....
T Consensus 25 ~l~~~F~~~G~v~~~~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 25 ELRSLFERRGRVIECDVVK-------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp HHHHHHHHHSCEEEEEECS-------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred HHHHHHHcCCCEEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 4889999999999998874 499999999999999999999999999999999988443
No 136
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.40 E-value=6.8e-14 Score=76.42 Aligned_cols=60 Identities=22% Similarity=0.320 Sum_probs=55.0
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLA 61 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~ 61 (105)
+|+++|+.||.|..+.++.++ ++.+++||||+|.+.++|++|++. ++..+.++.|.|+++
T Consensus 15 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 15 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp HHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred HHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 478999999999999999887 899999999999999999999994 889999999998864
No 137
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.40 E-value=6e-13 Score=77.84 Aligned_cols=58 Identities=26% Similarity=0.479 Sum_probs=53.1
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.||.|..+.++ ++||||+|.+.++|++|++.||+..+.++.|.|+++....
T Consensus 47 ~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 47 ELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp HHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred HHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 488999999999999887 5899999999999999999999999999999999987443
No 138
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.40 E-value=1.3e-12 Score=80.39 Aligned_cols=63 Identities=32% Similarity=0.491 Sum_probs=59.6
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
+|+++|+.||.|..+.++.++ ++.++++|||+|.+.++|++|++.|++..+.++.|.|.++.+
T Consensus 18 ~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 18 EFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp HHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred HHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 478999999999999999998 999999999999999999999999999999999999998873
No 139
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.40 E-value=2.9e-13 Score=83.61 Aligned_cols=63 Identities=22% Similarity=0.369 Sum_probs=58.5
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|+.||.|..+.++.++ ++.++++|||+|.+.++|++|++ +++..+.++.|.|.++.++
T Consensus 103 ~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 103 EFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 478999999999999999987 89999999999999999999998 8999999999999998754
No 140
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=9e-13 Score=77.40 Aligned_cols=58 Identities=26% Similarity=0.213 Sum_probs=53.2
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
+|+++|++||.|..|.|+. .++||||+|.+.++|++||..||+..+.++.|.|+++..
T Consensus 26 ~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 26 EIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp HHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred HHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 4889999999999998764 468999999999999999999999999999999999984
No 141
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.40 E-value=7.5e-13 Score=78.96 Aligned_cols=60 Identities=20% Similarity=0.370 Sum_probs=54.3
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|++||.|..|.+. .+++||||+|.+.++|++||+.||+..+.++.|+|.++....
T Consensus 53 ~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 53 LLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp HHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred HHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 488999999999999886 357999999999999999999999999999999999988443
No 142
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.39 E-value=2.4e-12 Score=79.15 Aligned_cols=64 Identities=22% Similarity=0.380 Sum_probs=58.7
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|++||.|.++.++.++++.+++||||+|.+.++|++|++.|++..+.++.|.|.++...
T Consensus 16 ~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 16 ILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp HHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred HHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 4889999999999999999888889999999999999999999999999999999999998743
No 143
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.39 E-value=1.4e-12 Score=80.54 Aligned_cols=61 Identities=28% Similarity=0.580 Sum_probs=57.1
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCC--eeEEEEEe
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDG--RPMQIQLA 61 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~--~~i~V~~~ 61 (105)
+|+++|++||.|..+.++.++ ++.++++|||+|.+.++|++|+..||+..+.+ ++|.|+++
T Consensus 105 ~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 105 QLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 478999999999999999998 89999999999999999999999999999977 89999875
No 144
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=6.5e-13 Score=74.09 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=52.3
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHh-CCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQY-NGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l-~~~~i~~~~i~V~~~~ 62 (105)
+|+++|++||.|..+.++.+ ++||||+|.+.++|++|++.| ++..+.++.|+|++++
T Consensus 28 ~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 28 DLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp HHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred HHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 47899999999999998864 799999999999999999999 9999999999999864
No 145
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.39 E-value=6.8e-13 Score=78.53 Aligned_cols=59 Identities=14% Similarity=0.159 Sum_probs=53.8
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
||+++|++||.|.+|.|+++. ++|++||+|.+.++|++|+..||+..+.++.|.|.++.
T Consensus 33 dl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 33 DVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp HHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 578999999999999886542 58999999999999999999999999999999999986
No 146
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.39 E-value=6.9e-13 Score=85.58 Aligned_cols=62 Identities=27% Similarity=0.434 Sum_probs=56.7
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
+|+++|++||.|..+.|+.++ +.+++||||+|.+.++|++||+.||+..|.++.|.|.++..
T Consensus 119 ~l~~~F~~~G~i~~~~i~~d~-~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 119 ALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp HHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred HHHHHHhhcCCeEEEEeeccC-CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 488999999999999999875 33689999999999999999999999999999999999873
No 147
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.39 E-value=1.1e-12 Score=77.18 Aligned_cols=61 Identities=23% Similarity=0.484 Sum_probs=55.5
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
+|+++|+.||.|..|.++.+ +.+++||||+|.+.++|++|+..||+..+.++.|.|.++.+
T Consensus 24 ~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 24 EMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp HHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred HHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 47899999999999999865 34589999999999999999999999999999999999873
No 148
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.38 E-value=1.9e-12 Score=83.54 Aligned_cols=62 Identities=34% Similarity=0.537 Sum_probs=58.8
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|++||.|.+|.|++++ ++++++||||+|.+.++|++||+.+++..+.++.|++.++.
T Consensus 31 ~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 31 MLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp HHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 488999999999999999998 89999999999999999999999999999999999998876
No 149
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.38 E-value=1.6e-12 Score=80.63 Aligned_cols=61 Identities=26% Similarity=0.384 Sum_probs=56.3
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccC---CeeEEEEEe
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLD---GRPMQIQLA 61 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~---~~~i~V~~~ 61 (105)
+|+++|++||.|..+.++.++++.+++||||+|.+.++|++|++.||+..+. +++|.|.++
T Consensus 111 ~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 111 DIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred HHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 4789999999999999999888899999999999999999999999998776 389999986
No 150
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.38 E-value=6.9e-13 Score=76.47 Aligned_cols=62 Identities=23% Similarity=0.392 Sum_probs=57.2
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|+.||.|..+.++.++++.+++||||+|.+.++|++|+. ++..++++.|.|.++..+
T Consensus 25 ~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 25 EIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIRK 86 (102)
T ss_dssp HHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEEC
T ss_pred HHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCcC
Confidence 47899999999999999998888999999999999999999998 889999999999988743
No 151
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=7.7e-13 Score=75.72 Aligned_cols=60 Identities=20% Similarity=0.297 Sum_probs=52.9
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|+.||.|. +.++.+ .+++||||+|.+.++|++|++.||+..+.++.|.|+++.+.
T Consensus 35 ~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 35 DLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp HHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred HHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 4889999999986 666653 56899999999999999999999999999999999998744
No 152
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.38 E-value=1.8e-12 Score=78.31 Aligned_cols=60 Identities=18% Similarity=0.218 Sum_probs=53.2
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccE-EEEEeCCHHHHHHHHHHhCCcccCC--eeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGT-ADLIYERRSDAIKAMKQYNGVPLDG--RPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~-~fv~f~~~~~a~~ai~~l~~~~i~~--~~i~V~~~~~~ 64 (105)
+|+++|++||.|.+|.++.. .+++ |||+|.+.++|++|++.||+..|.+ +.|+|++++..
T Consensus 44 ~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 44 VLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp HHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred HHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 48899999999999988763 2577 9999999999999999999999988 89999999843
No 153
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.38 E-value=1.2e-12 Score=81.82 Aligned_cols=61 Identities=18% Similarity=0.213 Sum_probs=53.9
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCC--eeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDG--RPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~--~~i~V~~~~~~ 64 (105)
+|+++|++||.|.+|.|+... +++|+||+|.+.++|++|++.||+..|.+ +.|+|++++..
T Consensus 62 ~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 62 VLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp HHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred HHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 488999999999999987542 46899999999999999999999999965 99999999844
No 154
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=7e-13 Score=78.42 Aligned_cols=60 Identities=10% Similarity=0.166 Sum_probs=52.2
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCccc-----CCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPL-----DGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i-----~~~~i~V~~~~~~~ 65 (105)
+|+++|++||.|..|.|+.+ ++||||+|.+.++|++|++.||+.++ .+++|.|.++...+
T Consensus 43 ~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 43 QLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQ 107 (114)
T ss_dssp HHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCC
T ss_pred HHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCc
Confidence 48999999999999877542 68999999999999999999999988 57889999987433
No 155
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=8.5e-13 Score=77.86 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=51.9
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCC--cccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNG--VPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~--~~i~~~~i~V~~~~~~ 64 (105)
+|+++|++||.|.+|.|+.. ++||||+|.+.++|++||+.|++ ..+.++.|.|.++...
T Consensus 42 ~L~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~ 102 (112)
T 1x4f_A 42 AVLKLAEPYGKIKNYILMRM-----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKY 102 (112)
T ss_dssp HHHTTTTTTSCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSC
T ss_pred HHHHHHHhcCCEEEEEEecC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccc
Confidence 48899999999999998753 79999999999999999998864 5689999999999833
No 156
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.37 E-value=1.8e-13 Score=79.77 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=57.1
Q ss_pred CHHHHhccCCC---eeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGP---LKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~---i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
+|+++|+.||. |..|.|+.++.++++|||||+|.+.++|++||. +|+..+.++.|+|.++..
T Consensus 27 ~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 27 DVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEINN 91 (107)
T ss_dssp HHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECCH
T ss_pred HHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECCH
Confidence 48899999887 889999988888999999999999999999999 999999999999998873
No 157
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.37 E-value=5.6e-13 Score=76.71 Aligned_cols=58 Identities=19% Similarity=0.319 Sum_probs=52.9
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
+|+++|+.||.|.++.+.. +++||||+|.+.++|++|+..||+..+.++.|+|+++++
T Consensus 43 ~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 43 DLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp HHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred HHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 4789999999999998874 479999999999999999999999999999999998763
No 158
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.37 E-value=9.7e-13 Score=80.75 Aligned_cols=60 Identities=25% Similarity=0.403 Sum_probs=55.0
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|+.||.|.+|.++.+ +++||||+|.+.++|++|+..||+..+.++.|+|+++.+.
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 48899999999999999876 5799999999999999999999999999999999998743
No 159
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=3.2e-12 Score=73.30 Aligned_cols=58 Identities=36% Similarity=0.539 Sum_probs=52.1
Q ss_pred CHHHHhccC--CCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEF--GPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~--G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.| |.|..+.++ ++||||+|.+.++|++|+..||+..+.++.|.|+++.+..
T Consensus 31 ~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 31 MIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVD 90 (99)
T ss_dssp HHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCC
T ss_pred HHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 488999999 999988765 4699999999999999999999999999999999988444
No 160
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.8e-12 Score=73.79 Aligned_cols=59 Identities=19% Similarity=0.268 Sum_probs=51.0
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.||.|.+| +.++ ++. ||||+|.+.++|++||+ ||+..+.++.|.|+++..+.
T Consensus 24 ~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 24 QLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp HHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred HHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 488999999999987 5555 555 99999999999999999 99999999999999776443
No 161
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.36 E-value=2.7e-12 Score=73.63 Aligned_cols=56 Identities=9% Similarity=0.244 Sum_probs=51.7
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
+|+++|+.||.|..+.+. ++||||+|.+.++|++|+..||+..+.++.|+|++++.
T Consensus 39 ~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 39 DLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp HHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred HHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 488999999999999883 68999999999999999999999999999999999873
No 162
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.36 E-value=2.7e-12 Score=78.97 Aligned_cols=61 Identities=26% Similarity=0.519 Sum_probs=55.8
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCee--EEEEEe
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRP--MQIQLA 61 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~--i~V~~~ 61 (105)
+|+++|++||.|..+.++.++ ++.++++|||+|.+.++|++|++.||+..+.++. |.|.++
T Consensus 104 ~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 104 ELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 478999999999999999988 8999999999999999999999999999999865 777764
No 163
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.36 E-value=1.3e-12 Score=80.73 Aligned_cols=64 Identities=25% Similarity=0.492 Sum_probs=59.5
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|+.||.|.++.++.++ ++.+++||||+|.+.++|++|++.|++..+.++.|.|.++.+.
T Consensus 19 ~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 83 (168)
T 1b7f_A 19 ELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPG 83 (168)
T ss_dssp HHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred HHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCC
Confidence 488999999999999999887 8899999999999999999999999999999999999998743
No 164
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.7e-12 Score=73.59 Aligned_cols=59 Identities=25% Similarity=0.346 Sum_probs=51.0
Q ss_pred CHHHHhccCCC-eeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCC-cccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGP-LKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNG-VPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~-i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~-~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|++||. |..+.+. +++||||+|.+.++|++|++.||+ ..+.++.|+|+++.+..
T Consensus 24 ~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 24 DLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp HHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred HHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 48899999999 5555553 368999999999999999999999 99999999999988443
No 165
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.35 E-value=4.6e-14 Score=81.31 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=54.4
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|+.||.|.. .++.++ ++.+++||||+|.+.++|++||+ ||+..+.++.|+|+++..+
T Consensus 33 ~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~ 95 (101)
T 1fj7_A 33 ELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGR 95 (101)
T ss_dssp HHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCC
T ss_pred HHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCC
Confidence 47899999998876 455555 78899999999999999999999 9999999999999998743
No 166
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.5e-12 Score=74.21 Aligned_cols=61 Identities=18% Similarity=0.437 Sum_probs=53.5
Q ss_pred CHHHHhccCCCeeEE-EEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSA-KLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~-~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.||.|..+ .++.++ ++ .|||+|.+.++|++|+..||+..+.++.|.|+++.+.+
T Consensus 31 ~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 31 VLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp HHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred HHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 488999999999999 477765 32 29999999999999999999999999999999998553
No 167
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.35 E-value=5.1e-13 Score=76.25 Aligned_cols=61 Identities=30% Similarity=0.470 Sum_probs=54.1
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
|+++|++||.|..|.++. ++.+++||||+|.+.++|++|++.||+..+.++.|.|+++...
T Consensus 29 l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (97)
T 1nu4_A 29 LHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTD 89 (97)
T ss_dssp HHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSC
T ss_pred HHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCC
Confidence 349999999999988763 5567899999999999999999999999999999999998743
No 168
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.35 E-value=3.9e-12 Score=76.28 Aligned_cols=59 Identities=20% Similarity=0.265 Sum_probs=51.9
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccE-EEEEeCCHHHHHHHHHHhCCcccCC--eeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGT-ADLIYERRSDAIKAMKQYNGVPLDG--RPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~-~fv~f~~~~~a~~ai~~l~~~~i~~--~~i~V~~~~~~ 64 (105)
+|+++|++||.|.+|.|+.. .++ |||+|.+.++|+.|++.||+..|.+ +.|+|++++..
T Consensus 41 ~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 41 VLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp HHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred HHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 48899999999999988652 275 9999999999999999999999987 58999998744
No 169
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.34 E-value=3.2e-12 Score=85.26 Aligned_cols=65 Identities=23% Similarity=0.291 Sum_probs=60.8
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.||.|..+.++.++++.++++|||+|.+.++|++|+..||+..+.++.|.|.++.+.+
T Consensus 201 ~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 201 ALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp HHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred HHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 48899999999999999998899999999999999999999999999999999999999997544
No 170
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.34 E-value=8.5e-13 Score=80.42 Aligned_cols=64 Identities=28% Similarity=0.392 Sum_probs=54.3
Q ss_pred CHHHHhccCCCeeEE------EEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSA------KLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~------~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|+.||.|..+ .+....++.+++||||+|.+.++|++||..||+..+.++.|.|+++...
T Consensus 61 ~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 61 DLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSA 130 (143)
T ss_dssp HHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCS
T ss_pred HHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 488999999998764 2222237888999999999999999999999999999999999999743
No 171
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=5.6e-12 Score=72.95 Aligned_cols=59 Identities=19% Similarity=0.261 Sum_probs=50.5
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|++||.|..|.|+. .+++||||+|.+.++|+.||+.++ .+.++.|+|+++...+
T Consensus 33 ~L~~~F~~~G~V~~v~i~~----~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 33 VLLRLLQKYGEVLNLVLSS----KKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWLEGQP 91 (100)
T ss_dssp HHHHHHHTTSCEEEEEEES----SSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECSSCCC
T ss_pred HHHHHHHhcCCEEEEEEcc----CCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEccCCC
Confidence 4889999999999999873 568999999999999999999754 4678999999987443
No 172
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=6.7e-13 Score=79.50 Aligned_cols=62 Identities=16% Similarity=0.254 Sum_probs=56.0
Q ss_pred CHHHHhccCCCe----eEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGPL----KSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~i----~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
+|+++|+.||.| ..|.|+.+++++++|||||+|.+.++|++||+. |+..+.++.|.|..+..
T Consensus 39 dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~~ 104 (123)
T 2dha_A 39 EVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRSTA 104 (123)
T ss_dssp HHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEECH
T ss_pred HHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECCH
Confidence 589999999875 689999888999999999999999999999996 99999999999988863
No 173
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.34 E-value=8.1e-13 Score=75.31 Aligned_cols=60 Identities=22% Similarity=0.432 Sum_probs=52.8
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|+.||.|..+ ..++.+++||||+|.+.++|++|+..|++..+.++.|.|+++.++
T Consensus 32 ~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 32 ELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp HHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred HHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 478999999987665 237788999999999999999999999999999999999998743
No 174
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.32 E-value=4.7e-12 Score=81.63 Aligned_cols=59 Identities=15% Similarity=0.272 Sum_probs=54.4
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
+|+++|++||.|.+|.++.+ .++||||+|.+.++|++||+.||+..+.++.|.|.+++.
T Consensus 21 ~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 21 RVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp HHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred HHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 48899999999999998765 379999999999999999999999999999999999873
No 175
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.32 E-value=3.4e-12 Score=81.73 Aligned_cols=62 Identities=32% Similarity=0.487 Sum_probs=55.6
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|+.||.|.+|.++.++ ++.+++||||+|.+.++|++|++.|++..+.++.|.|.++.
T Consensus 44 ~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 44 TIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred HHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 488999999999999999988 89999999999999999999999999999999999998765
No 176
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.30 E-value=9e-12 Score=78.66 Aligned_cols=63 Identities=22% Similarity=0.290 Sum_probs=57.6
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|+.||.|.+|.++.++ ++.+++||||+|.+.++|++||+. ++..+.++.|.|.++...
T Consensus 29 ~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~ 92 (196)
T 1l3k_A 29 SLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR 92 (196)
T ss_dssp HHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC-
T ss_pred HHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCc
Confidence 488999999999999999998 899999999999999999999986 889999999999988743
No 177
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.30 E-value=4.3e-12 Score=84.96 Aligned_cols=63 Identities=22% Similarity=0.368 Sum_probs=57.6
Q ss_pred CHHHHhccCCCeeEEEEEeCCC--CCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRS--GRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~--~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|+.||.|..+.++.+.. +.+++||||+|.+.++|++|+ .||+..+.++.|.|.++.++
T Consensus 227 ~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 227 LLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred HHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 4789999999999999988875 899999999999999999999 99999999999999998854
No 178
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.29 E-value=4.9e-12 Score=83.43 Aligned_cols=60 Identities=17% Similarity=0.214 Sum_probs=53.1
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCccc------------CCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPL------------DGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i------------~~~~i~V~~~~~~~ 65 (105)
+|+++|++||.|.+|.|+. +++||||+|.+.++|+.|++.|++..| .++.|.|.++...+
T Consensus 159 ~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 159 RIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp HHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred HHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCC
Confidence 4789999999999999986 379999999999999999999999999 78999999998443
No 179
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.28 E-value=1e-11 Score=79.43 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=56.1
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
+|+++|+.||.|..|.|+++.++.++|||||+|.+.++|++|++.++ ..+.|+.|.|.++.+
T Consensus 125 ~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 125 DIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred HHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 47899999999999999998888899999999999999999998655 589999999998764
No 180
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=6.3e-12 Score=71.74 Aligned_cols=53 Identities=19% Similarity=0.259 Sum_probs=48.6
Q ss_pred HHHHhccC-CCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 2 IYELFSEF-GPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 2 l~~~f~~~-G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
|+++|++| |.|.+| ++ |+|||.|.+.++|++|++.|++.++.+++|+|.+++.
T Consensus 30 L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 30 LRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPK 83 (96)
T ss_dssp HHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCC
T ss_pred HHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCC
Confidence 77899999 599987 22 9999999999999999999999999999999999983
No 181
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.28 E-value=1.7e-12 Score=78.07 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=54.9
Q ss_pred CHHHHhccCCCee--EEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGPLK--SAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~i~--~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
+|+++|+.| .|. .|.|+.++.++++|||||+|.+.++|++||+. ++..|.++.|.|..+..
T Consensus 58 dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 58 EIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKSSQ 120 (126)
T ss_dssp HHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEEECH
T ss_pred HHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEECCH
Confidence 589999999 677 89999888889999999999999999999985 77999999999998873
No 182
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.27 E-value=7.6e-12 Score=70.35 Aligned_cols=58 Identities=19% Similarity=0.300 Sum_probs=52.5
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|++| .|.++.+. ++++||||+|.+.++|++|++.||+..+.++.|+|+++...
T Consensus 21 ~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 21 EVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp HHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred HHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 478999999 99998885 46899999999999999999999999999999999998743
No 183
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.26 E-value=1.1e-11 Score=77.12 Aligned_cols=60 Identities=22% Similarity=0.432 Sum_probs=53.6
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|+.||.|..+ ..++.++++|||+|.+.++|++|+..||+..+.++.|.|+++.++
T Consensus 115 ~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 115 ELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 478999999987765 448889999999999999999999999999999999999998754
No 184
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.24 E-value=3.9e-11 Score=79.98 Aligned_cols=65 Identities=26% Similarity=0.384 Sum_probs=60.4
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.||.|..+.++.++ ++.+++||||+|.+.++|++|+..|++..+.++.|.|.++....
T Consensus 111 ~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 111 QFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp HHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGG
T ss_pred HHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 478999999999999999988 99999999999999999999999999999999999999987433
No 185
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.23 E-value=3.9e-11 Score=79.93 Aligned_cols=60 Identities=32% Similarity=0.556 Sum_probs=54.9
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
|.++|+.||.|.+|.++. ++++++||||+|.+.++|++||+.||+..+.++.|+|+++..
T Consensus 30 L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 89 (282)
T 3pgw_A 30 LYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKT 89 (282)
T ss_pred HHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEecc
Confidence 558999999999998775 677899999999999999999999999999999999999873
No 186
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=5.3e-11 Score=67.34 Aligned_cols=59 Identities=20% Similarity=0.294 Sum_probs=52.7
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccCCC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVSVL 67 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~~~ 67 (105)
+|.+.|+.||.|..++++.+ .+||+|.+.++|.+||+ ||+..+.++.|+|+++++.+..
T Consensus 31 ~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~dW~~ 89 (91)
T 2dnr_A 31 ELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKELLNRTITIALKSPSGPS 89 (91)
T ss_dssp HHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCCSSCS
T ss_pred HHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCCCccc
Confidence 37889999999999999886 38999999999999998 9999999999999999865543
No 187
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.18 E-value=7.2e-11 Score=73.09 Aligned_cols=62 Identities=23% Similarity=0.381 Sum_probs=54.3
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CC--CcccEEEEEeCCHHHHHHHHHHhCCcccC---CeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SG--RSLGTADLIYERRSDAIKAMKQYNGVPLD---GRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~--~~~g~~fv~f~~~~~a~~ai~~l~~~~i~---~~~i~V~~~~ 62 (105)
+|+++|++||.|.++.++.++ ++ .+++||||+|.+.++|++|++.|++..+. .+.+.+..+.
T Consensus 19 ~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~ 86 (175)
T 3nmr_A 19 DLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPAD 86 (175)
T ss_dssp HHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECG
T ss_pred HHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcccc
Confidence 488999999999999999988 54 78999999999999999999999998775 5667777665
No 188
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.17 E-value=7.4e-11 Score=78.55 Aligned_cols=58 Identities=24% Similarity=0.338 Sum_probs=53.3
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccC-CeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLD-GRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~-~~~i~V~~~~ 62 (105)
+|+++|++||.|.++.++.++ ++++||+|.+.++|++|++.||+..+. ++.|+|++++
T Consensus 223 ~l~~~F~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 223 MLSMLFNQFPGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred HHHHHHHhcCCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 588999999999999988653 589999999999999999999999999 9999999975
No 189
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=8.3e-11 Score=69.09 Aligned_cols=56 Identities=23% Similarity=0.235 Sum_probs=45.7
Q ss_pred CHHHHhccCCCeeEEEEEeCC-C---CCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEE
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-S---GRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQ 59 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~---~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~ 59 (105)
+|+++|++||.|. +.++.++ + +++++||||+|.+.++|++||+.|+ .++++.|.+.
T Consensus 24 ~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 24 EITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp HHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred HHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 4889999999999 7777766 5 7899999999999999999999883 3455555444
No 190
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.15 E-value=5.4e-11 Score=66.38 Aligned_cols=54 Identities=20% Similarity=0.485 Sum_probs=48.5
Q ss_pred CHHHHhccC----C-------CeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEE
Q psy1928 1 MIYELFSEF----G-------PLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQL 60 (105)
Q Consensus 1 ~l~~~f~~~----G-------~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~ 60 (105)
+|+++|+.| | .|.++.+..+ ++||||+|.+.++|++|+ .||+..+.++.|+|+.
T Consensus 22 ~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 22 AMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp HHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred HHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEeC
Confidence 478899999 8 8999888754 799999999999999999 8999999999999873
No 191
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.13 E-value=6.3e-11 Score=79.24 Aligned_cols=65 Identities=18% Similarity=0.225 Sum_probs=53.3
Q ss_pred CHHHHhccCC-CeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFG-PLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G-~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|+.|| .|..+.++.++.+.+++||||+|.+.++|++|+..|++..+.++.|.|.++.+..
T Consensus 133 ~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 133 NIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp HHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-
T ss_pred HHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCc
Confidence 4789999999 9999999888777889999999999999999999999999999999999987443
No 192
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.12 E-value=7e-11 Score=76.89 Aligned_cols=59 Identities=25% Similarity=0.489 Sum_probs=54.5
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
+|+++|+.||.|..|.++.++ ++||||+|.+.++|++|++.|++..+.++.|.|.++..
T Consensus 51 ~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 51 SLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp HHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred HHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 488999999999999998764 68999999999999999999999999999999999873
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.11 E-value=1.6e-10 Score=76.58 Aligned_cols=64 Identities=27% Similarity=0.465 Sum_probs=56.3
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhC-CcccC---CeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYN-GVPLD---GRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~-~~~i~---~~~i~V~~~~~~ 64 (105)
+|+++|+.||.|..|.++.++++.+++||||+|.+.++|.+|+..|| +..+. +++|.|.++...
T Consensus 112 ~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 112 LLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 47899999999999999998899999999999999999999999995 44444 889999988743
No 194
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.11 E-value=1.9e-10 Score=74.46 Aligned_cols=62 Identities=16% Similarity=0.236 Sum_probs=56.2
Q ss_pred CHHHHhccCCCeeEEEEEeCC-----CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-----SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-----~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|.+.|++||.|.++.|+.+. ++.++|++||+|.+.++|++|+..||+..+.|+.|.|.+..
T Consensus 145 dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 145 EVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 477889999999999998654 44889999999999999999999999999999999999976
No 195
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.11 E-value=8e-11 Score=72.53 Aligned_cols=60 Identities=28% Similarity=0.411 Sum_probs=53.4
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|+.||.|.++.++.++ ++.+++||||+|.+.++|++|++. ...+.++.|.|.++.
T Consensus 19 ~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 19 NLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp HHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred HHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 488999999999999999997 899999999999999999999984 567888888877665
No 196
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.09 E-value=2.1e-10 Score=64.72 Aligned_cols=57 Identities=16% Similarity=0.171 Sum_probs=45.2
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCccc--CCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPL--DGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i--~~~~i~V~~~~~~~ 65 (105)
+|+++|++||.|.+|.|+.+ ++|||||+|.+.++|++ +++..+ .++.|.|.++.++.
T Consensus 27 ~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k~ 85 (89)
T 3d2w_A 27 ELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPKH 85 (89)
T ss_dssp HHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC---
T ss_pred HHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCCC
Confidence 48899999999999998874 68999999999999883 455544 58889988887443
No 197
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=5.3e-11 Score=66.73 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=46.3
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVS 65 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~ 65 (105)
+|+++|++||.|..+.++.+ +++||||+|.+.++|++++. ....+.++.|.|.++.++.
T Consensus 21 ~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 21 ELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPKH 79 (88)
T ss_dssp HHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCCC
T ss_pred HHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCCC
Confidence 48899999999999988764 67999999999999976432 1234578888888877443
No 198
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.08 E-value=9.4e-11 Score=74.33 Aligned_cols=59 Identities=25% Similarity=0.489 Sum_probs=54.2
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
+|+++|+.||.|.+|.++.++ ++||||+|.+.++|++|++.||+..+.++.|.|.++..
T Consensus 20 ~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 20 SLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp HHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred HHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 478999999999999988764 68999999999999999999999999999999999873
No 199
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.04 E-value=4.2e-10 Score=73.18 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=52.9
Q ss_pred CHHHHhccCC-CeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccC-CeeEEEEEeec
Q psy1928 1 MIYELFSEFG-PLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLD-GRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G-~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~-~~~i~V~~~~~ 63 (105)
+|+++|+.|| .|..+.++.+ .+++|||+|.+.++|++|+..||+..+. ++.|.|.++++
T Consensus 167 ~l~~~f~~~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 167 DLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp HHHHHHHTTSCCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred HHHHHHHHcCCCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 4789999999 9999988543 3689999999999999999999999999 99999999873
No 200
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.03 E-value=2.5e-10 Score=72.35 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=53.0
Q ss_pred CHHHHhccCC-CeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccC-CeeEEEEEeec
Q psy1928 1 MIYELFSEFG-PLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLD-GRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~G-~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~-~~~i~V~~~~~ 63 (105)
+|+++|+.|| .|..+.++.+ .+++|||+|.+.++|++|+..||+..+. ++.|.|.++++
T Consensus 136 ~l~~~f~~~G~~v~~v~i~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 136 DLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp HHHHHHHHTTSCCCEEEESST----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred HHHHHHHHcCCCceEEEEEeC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 4789999999 9999988653 2689999999999999999999999999 99999999873
No 201
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.03 E-value=3.3e-10 Score=72.94 Aligned_cols=60 Identities=20% Similarity=0.374 Sum_probs=50.8
Q ss_pred CHHHHhccCCCe--eEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCe----eEEEEEe
Q psy1928 1 MIYELFSEFGPL--KSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGR----PMQIQLA 61 (105)
Q Consensus 1 ~l~~~f~~~G~i--~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~----~i~V~~~ 61 (105)
+|+++|++||.| ..+.++.++ +..++++||+|.+.++|.+||..||+..|.+. ++.|+++
T Consensus 139 ~L~~~F~~~G~v~~~~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 139 NFFEICDELGVKRPTSVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHHHHHHHHTCCCCSEEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred HHHHHHHhcCCcceEEEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 489999999999 888887765 44569999999999999999999999999865 5666654
No 202
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.00 E-value=7.6e-10 Score=73.28 Aligned_cols=57 Identities=26% Similarity=0.370 Sum_probs=52.6
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+|+++|+.||.|..|.+..+ ++||||+|.+.++|++|+..|++..+.++.|.|.++.
T Consensus 38 ~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 38 DFKRLFERYGEPSEVFINRD-----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp HHHHHTGGGCCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHhcCCEEEEEEeCC-----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 48899999999999988754 6999999999999999999999999999999999876
No 203
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=1.8e-09 Score=61.37 Aligned_cols=53 Identities=11% Similarity=0.370 Sum_probs=48.6
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
|.+.|+.||.|..++++.+ -+||+|.+.++|.+||+ ||+..+.++.|+|++..
T Consensus 41 L~~~F~~~G~Vilvr~v~d-------~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 41 LMQTLGSYGTIVLVRINQG-------QMLVTFADSHSALSVLD-VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp HHHHHHHHSCCSEEEEETT-------EEEEECSCSHHHHHHHH-GGGSEETTEEEEEECCC
T ss_pred HHHHHHHCCCEEEEEEecC-------cEEEEEcChHHHHHHHh-cCCeeeCCeEEEEeccC
Confidence 7788999999999999987 39999999999999999 99999999999998654
No 204
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.88 E-value=2.3e-09 Score=73.94 Aligned_cols=56 Identities=11% Similarity=0.192 Sum_probs=46.4
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccC---Ce--eEEEEEe
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLD---GR--PMQIQLA 61 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~---~~--~i~V~~~ 61 (105)
+|+++|++||+|..|.++. +++||||+|.+.++|++||+.||+.++. ++ .|.|.+.
T Consensus 36 ~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~ 96 (345)
T 3tht_A 36 QLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFV 96 (345)
T ss_dssp HHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEC
T ss_pred HHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEe
Confidence 4899999999999887643 4699999999999999999999999873 33 4566655
No 205
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.86 E-value=2e-10 Score=71.40 Aligned_cols=62 Identities=16% Similarity=0.162 Sum_probs=50.6
Q ss_pred CHHHHhccCCCeeEEEEEeCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~-~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|+.||.+..+ ++.+. ++.+++||||+|.+.++|++|++ ||+..+.++.|.|.++...
T Consensus 29 ~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~ 91 (175)
T 1fje_B 29 ELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGR 91 (175)
T ss_dssp HHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCCS
T ss_pred HHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCCc
Confidence 467888888876552 22333 77889999999999999999995 9999999999999988743
No 206
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.82 E-value=7.3e-09 Score=63.92 Aligned_cols=57 Identities=19% Similarity=0.459 Sum_probs=48.7
Q ss_pred CHHHHhccC----C-------CeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 1 MIYELFSEF----G-------PLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 1 ~l~~~f~~~----G-------~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
+|+++|++| | .|..+.+.. +++||||+|.+.++|++|+ .||+..+.++.|.|.++..
T Consensus 20 ~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~ 87 (172)
T 2g4b_A 20 AMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHD 87 (172)
T ss_dssp HHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----TTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSS
T ss_pred HHHHHHHHHhhhcccccCCCCceeeeEecC-----CCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcc
Confidence 478899999 6 666666654 3799999999999999999 7999999999999998763
No 207
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.79 E-value=9.4e-09 Score=64.73 Aligned_cols=58 Identities=19% Similarity=0.464 Sum_probs=48.4
Q ss_pred CHHHHhccC----C-------CeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeecc
Q psy1928 1 MIYELFSEF----G-------PLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64 (105)
Q Consensus 1 ~l~~~f~~~----G-------~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~ 64 (105)
+|+++|+.| | .|..+.+. .+++||||+|.+.++|++|+ .||+..+.++.|.|.++...
T Consensus 20 ~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-----~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 20 AMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDY 88 (198)
T ss_dssp HHHHHHHHHHHHHTCCSSSSCSEEEEEEE-----TTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCCC
T ss_pred HHHHHHHHHHhhcccccCCCCceEEeEec-----CCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCCC
Confidence 478999999 4 55555543 34799999999999999999 79999999999999988743
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.55 E-value=2e-07 Score=55.43 Aligned_cols=57 Identities=16% Similarity=0.260 Sum_probs=48.7
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCC-HHHHHHHHHHhC--CcccCCeeEEEEEee
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYER-RSDAIKAMKQYN--GVPLDGRPMQIQLAA 62 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~-~~~a~~ai~~l~--~~~i~~~~i~V~~~~ 62 (105)
+|+++|++||.|.+|.+..+. ..+||.|.+ ..+|..|+..|+ +..|.+..++++...
T Consensus 35 dLke~F~~~G~V~~Vd~~~g~-----~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 35 DLHILFSNHGEIKWIDFVRGA-----KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp HHHHHTCSSCCEEEEECCTTC-----SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred HHHHHHHhcCCEEEEEEecCC-----CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 488999999999999998764 359999999 899999999995 678888888887655
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.00013 Score=42.53 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=46.2
Q ss_pred HHHHhccC-----CCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEE
Q psy1928 2 IYELFSEF-----GPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQL 60 (105)
Q Consensus 2 l~~~f~~~-----G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~ 60 (105)
|+.++.++ |.|..+.+..| -+-|+|+|.+...|-+|.-.|++.++.++.|+|.-
T Consensus 38 Ir~lve~~~~i~~g~i~KI~L~pD-----H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 38 ICQFLQEEIHINEKDIRKILLVSD-----FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp HHHHHHHHTCCCTTTCSEEEEETT-----TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred HHHHHhhhhccCccceeEEEEecC-----CCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 56677777 89999887765 46799999999999999989999999999998864
No 210
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.17 E-value=0.0016 Score=38.34 Aligned_cols=54 Identities=15% Similarity=0.224 Sum_probs=43.2
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCC-eeEEEEEe
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDG-RPMQIQLA 61 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~-~~i~V~~~ 61 (105)
|...|++||.|.+..... ...+-+|.|.+..+|++||. .|+..+.+ -.|-|...
T Consensus 40 VL~~F~~~G~Iv~~~~~~-----~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 40 ILLQFAQYGNILKHVMSN-----TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp HHHHHHTTSCEEEEEECS-----SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred HHHHHHhhCcEEEeccCC-----CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 567899999998876521 24699999999999999998 49999984 56677664
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.94 E-value=0.0024 Score=36.70 Aligned_cols=57 Identities=12% Similarity=0.190 Sum_probs=48.3
Q ss_pred HHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeec
Q psy1928 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAAD 63 (105)
Q Consensus 2 l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~ 63 (105)
++++|..|+.+....+... -.-..|.|.+.++|.+|-..|++..+.++.|+|-++.+
T Consensus 27 ~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 27 FESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp HHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred HHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 5788999998877665542 34678999999999999999999999999999999873
No 212
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.59 E-value=0.0032 Score=38.04 Aligned_cols=34 Identities=24% Similarity=0.143 Sum_probs=27.2
Q ss_pred EEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q psy1928 15 AKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGV 49 (105)
Q Consensus 15 ~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~ 49 (105)
+.++.+.. .++||+||+|.+.++|++|+..+++.
T Consensus 3 ~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 3 YKLILNGK-TLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEecCc-cccchhHHHHHHHHhHHHHHHhhccc
Confidence 45555533 57899999999999999999887754
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.17 E-value=0.0078 Score=34.21 Aligned_cols=39 Identities=23% Similarity=0.265 Sum_probs=32.9
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQY 46 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l 46 (105)
||+++|+.||. ..|.++.| -.|||.|.+.+.|..|+..+
T Consensus 31 DI~~lFs~fgg-v~I~WidD------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 31 DLYQLFSAFGN-IQISWIDD------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp HHHHHHTTTCS-CCCEEEET------TEEEEECSCHHHHHHHHHHH
T ss_pred HHHHHhhccCC-EEEEEEcC------CeEEEEecCHHHHHHHHHhc
Confidence 68999999994 55677776 48999999999999999876
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.00 E-value=0.0086 Score=34.12 Aligned_cols=40 Identities=23% Similarity=0.246 Sum_probs=33.7
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYN 47 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~ 47 (105)
||+++|+.|| -..|.++.| -.|||.|.+.+.|..|+..+.
T Consensus 21 Di~~lFs~fg-gv~I~WidD------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 21 DLYQLFSAFG-NIQISWIDD------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp HHHHHTTTSE-EEEEEEEET------TEEEEEEEEECHHHHHHHHHT
T ss_pred HHHHHHhccC-CEEEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 6899999998 456777776 489999999999999999764
No 215
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.90 E-value=0.0062 Score=36.41 Aligned_cols=60 Identities=17% Similarity=0.300 Sum_probs=43.3
Q ss_pred HHHHhccCCCeeE-EEEEe---------CCCC-----CcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 2 IYELFSEFGPLKS-AKLHY---------DRSG-----RSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 2 l~~~f~~~G~i~~-~~i~~---------~~~~-----~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
+.+.|++||.|.+ +.+.. .+.. ....+..|.|++..+|++||. .|+..+.+..|-|....
T Consensus 23 VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 23 VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVFNGVLLGVIPYT 97 (132)
T ss_dssp HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEETTEECEEEECC
T ss_pred HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEeCcEEEEEEECC
Confidence 4678999999865 22111 0001 135788999999999999998 49999999888777655
No 216
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.76 E-value=0.0029 Score=38.03 Aligned_cols=39 Identities=26% Similarity=0.198 Sum_probs=34.7
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHh-CCcccCCeeEEEEEee
Q psy1928 23 GRSLGTADLIYERRSDAIKAMKQY-NGVPLDGRPMQIQLAA 62 (105)
Q Consensus 23 ~~~~g~~fv~f~~~~~a~~ai~~l-~~~~i~~~~i~V~~~~ 62 (105)
...+|+++++|.+.++|++|++.+ |+..+++ .|.+.++.
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~ 49 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDAT 49 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceeccccc
Confidence 356799999999999999999999 9999999 88888765
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=89.20 E-value=0.17 Score=36.23 Aligned_cols=40 Identities=13% Similarity=0.094 Sum_probs=29.2
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHH
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMK 44 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~ 44 (105)
+|.+.|+.||.|.++.+..++ ..|++|+|.+.+++++++.
T Consensus 68 ~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 68 KFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHS
T ss_pred HHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHh
Confidence 367889999999998766542 3799999999988887654
No 218
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.18 E-value=2 Score=24.51 Aligned_cols=53 Identities=21% Similarity=0.243 Sum_probs=38.2
Q ss_pred HHHHhcc-----CCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEee
Q psy1928 2 IYELFSE-----FGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAA 62 (105)
Q Consensus 2 l~~~f~~-----~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~ 62 (105)
|+-.|++ -|.|..+.... .-|+|+|.+...|++.++. ..+.|++..|.|.-..
T Consensus 25 L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 25 LTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAP 82 (104)
T ss_dssp HHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECC
T ss_pred heEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCC
Confidence 4455654 25777776542 5799999999999999873 3668888888887544
No 219
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=83.16 E-value=1.4 Score=23.12 Aligned_cols=34 Identities=9% Similarity=0.199 Sum_probs=24.7
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy1928 27 GTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLA 61 (105)
Q Consensus 27 g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~ 61 (105)
.|.||+... ..++.++..|+...+.++.+.|+.+
T Consensus 41 ~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 41 NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEEC
T ss_pred CcEEEEECH-HHHHHHHHHhccccCcCceEEEEEC
Confidence 488888874 5577888999999999999888765
No 220
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=80.32 E-value=2.9 Score=30.22 Aligned_cols=40 Identities=23% Similarity=0.265 Sum_probs=32.1
Q ss_pred CHHHHhccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q psy1928 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYN 47 (105)
Q Consensus 1 ~l~~~f~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~ 47 (105)
+|.++|+.||. ..|.++.+ ..+||.|.+.+.|..++.++.
T Consensus 455 ~i~~~fs~fg~-v~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 455 DLYQLFSAFGN-IQISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp HHHHHGGGGCC-CEEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred HHHHHHHhcCC-EEEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 47889999994 45555544 479999999999999999885
No 221
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=61.49 E-value=20 Score=20.25 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=34.8
Q ss_pred cCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEEeeccCC
Q psy1928 8 EFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVSV 66 (105)
Q Consensus 8 ~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~~~~~~~ 66 (105)
.||.-..+++.. ....|...+.++..+||+.|+.. ...+.++|-...+...
T Consensus 40 ~fGq~ldL~y~n-------~EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~~~ 90 (103)
T 2cu1_A 40 AFGQSMDLHYTN-------NELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVINGST 90 (103)
T ss_dssp HHSSCEEEEECS-------SSSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECCCC
T ss_pred HhCCeeeEEEec-------ceEEEeccCHHHHHHHHHHHccC-CcccceEEEEecCCCC
Confidence 467666665542 25679999999999999987644 3445677766664443
No 222
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=58.01 E-value=21 Score=19.54 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=35.0
Q ss_pred HHhccCCCeeEEEEEeCC-CCC--cccEEEEEeCCHHHHHHHHHHhCCcccCC
Q psy1928 4 ELFSEFGPLKSAKLHYDR-SGR--SLGTADLIYERRSDAIKAMKQYNGVPLDG 53 (105)
Q Consensus 4 ~~f~~~G~i~~~~i~~~~-~~~--~~g~~fv~f~~~~~a~~ai~~l~~~~i~~ 53 (105)
+.++.+..+....++..+ +.+ ...-|+|.|.+.+++..-...+++..+.+
T Consensus 20 ~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 20 EHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp HHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred HHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 344555555555555544 322 34789999999999999999999987653
No 223
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=42.09 E-value=23 Score=19.23 Aligned_cols=24 Identities=17% Similarity=0.068 Sum_probs=19.8
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCC
Q psy1928 25 SLGTADLIYERRSDAIKAMKQYNG 48 (105)
Q Consensus 25 ~~g~~fv~f~~~~~a~~ai~~l~~ 48 (105)
.+||.||++...++...+|....+
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTT
T ss_pred cCCEEEEEEecchhHHHHHHCCCC
Confidence 689999999998888888765554
No 224
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=41.73 E-value=36 Score=24.36 Aligned_cols=43 Identities=12% Similarity=0.292 Sum_probs=26.4
Q ss_pred HHHHh--ccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHH
Q psy1928 2 IYELF--SEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMK 44 (105)
Q Consensus 2 l~~~f--~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~ 44 (105)
|..+| +.+|-|.++.+...+.......+++.|.+.+++..++.
T Consensus 218 l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~~ 262 (520)
T 1wvf_A 218 LDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIVD 262 (520)
T ss_dssp CHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHHH
T ss_pred hhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHHH
Confidence 44555 36787887766443333334467888988777665443
No 225
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=41.48 E-value=54 Score=24.36 Aligned_cols=46 Identities=7% Similarity=0.184 Sum_probs=31.3
Q ss_pred CHHHHh----ccCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q psy1928 1 MIYELF----SEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQY 46 (105)
Q Consensus 1 ~l~~~f----~~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l 46 (105)
||..+| ..+|-|.++.+-.-+--....+.++.|.+.+++.+++..+
T Consensus 359 DL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 359 DIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 456666 2567777776644333334567889999999988888765
No 226
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=32.06 E-value=14 Score=14.93 Aligned_cols=9 Identities=33% Similarity=0.914 Sum_probs=6.4
Q ss_pred HHHHhccCC
Q psy1928 2 IYELFSEFG 10 (105)
Q Consensus 2 l~~~f~~~G 10 (105)
+..+|.++|
T Consensus 17 vkklfkkwg 25 (26)
T 1ytr_A 17 VKKLFKKWG 25 (26)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHHcC
Confidence 467787776
No 227
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=31.14 E-value=40 Score=18.77 Aligned_cols=28 Identities=11% Similarity=0.194 Sum_probs=23.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCcccCC
Q psy1928 26 LGTADLIYERRSDAIKAMKQYNGVPLDG 53 (105)
Q Consensus 26 ~g~~fv~f~~~~~a~~ai~~l~~~~i~~ 53 (105)
..-|+|.|.+.++...-...+++..+.+
T Consensus 53 ~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 53 YSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 3678999999999999999999987653
No 228
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=23.82 E-value=63 Score=19.01 Aligned_cols=25 Identities=8% Similarity=-0.056 Sum_probs=20.2
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCc
Q psy1928 25 SLGTADLIYERRSDAIKAMKQYNGV 49 (105)
Q Consensus 25 ~~g~~fv~f~~~~~a~~ai~~l~~~ 49 (105)
.+||.||++...++...++....+.
T Consensus 42 fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 42 VKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred CCcEEEEEEEchHHHHHHHhCCCCE
Confidence 5899999999888888887766543
No 229
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=23.61 E-value=1e+02 Score=17.12 Aligned_cols=45 Identities=16% Similarity=0.171 Sum_probs=30.8
Q ss_pred cCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHhCCcccCCeeEEEEE
Q psy1928 8 EFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQL 60 (105)
Q Consensus 8 ~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l~~~~i~~~~i~V~~ 60 (105)
.||+-..+....+ .-.|...+.++.++||+-|+... ..+.|+|-.
T Consensus 52 afGq~ldl~y~nn-------EL~iPL~~Q~DLDkAvelLDrs~-~~kSLrIlL 96 (100)
T 2npt_B 52 AFGQSMDLHYTNN-------ELVIPLTTQDDLDKAVELLDRSI-HMKSLKILL 96 (100)
T ss_dssp HHTSCEEEEEEET-------TEEEECCCHHHHHHHHHHHHHCS-SCCSEEEEE
T ss_pred HhCCeeeeEEecc-------eeEEecccHHHHHHHHHHhccCc-cccceEEEE
Confidence 5787777766643 56799999999999999765332 233444443
No 230
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=22.72 E-value=88 Score=22.67 Aligned_cols=37 Identities=8% Similarity=0.089 Sum_probs=23.2
Q ss_pred cCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHH
Q psy1928 8 EFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMK 44 (105)
Q Consensus 8 ~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~ 44 (105)
.+|-|.++.+...+........++.|.+.+++..++.
T Consensus 258 tlGiIt~~tl~l~p~p~~~~~~~~~f~~~~~a~~~~~ 294 (560)
T 1e8g_A 258 NMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVD 294 (560)
T ss_dssp SSEEEEEEEEECEECCSCEEEEEEEECSTTHHHHHHH
T ss_pred cEEEEEEEEEEEEeCCCceEEEEEEcCCHHHHHHHHH
Confidence 4676777765443332334567888998888766654
No 231
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=21.52 E-value=17 Score=19.20 Aligned_cols=14 Identities=21% Similarity=0.425 Sum_probs=10.4
Q ss_pred CHHHHhccCCCeeE
Q psy1928 1 MIYELFSEFGPLKS 14 (105)
Q Consensus 1 ~l~~~f~~~G~i~~ 14 (105)
|+.+++++||.+.+
T Consensus 7 DVqQLLK~fG~~IY 20 (72)
T 2nn4_A 7 DVQQLLKTFGHIVY 20 (72)
T ss_dssp HHHHHHHTTTCCCC
T ss_pred HHHHHHHHCCEEEE
Confidence 46778888887655
No 232
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=20.87 E-value=1.9e+02 Score=20.49 Aligned_cols=39 Identities=23% Similarity=0.217 Sum_probs=26.1
Q ss_pred cCCCeeEEEEEeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q psy1928 8 EFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQY 46 (105)
Q Consensus 8 ~~G~i~~~~i~~~~~~~~~g~~fv~f~~~~~a~~ai~~l 46 (105)
.+|-|.++.+...+........++.|.+.+++.+++..+
T Consensus 213 tlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 213 TLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp SSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHH
T ss_pred CcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHH
Confidence 456677776544333334456788999999988877665
No 233
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=20.55 E-value=76 Score=17.76 Aligned_cols=25 Identities=8% Similarity=0.061 Sum_probs=20.8
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCc
Q psy1928 25 SLGTADLIYERRSDAIKAMKQYNGV 49 (105)
Q Consensus 25 ~~g~~fv~f~~~~~a~~ai~~l~~~ 49 (105)
.+||.||+=.+..+...|+..+...
T Consensus 50 lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred CceEEEEEeCCHHHHHHHHhcccce
Confidence 5899999999999999998766543
Done!