RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1928
(105 letters)
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 58.0 bits (140), Expect = 2e-13
Identities = 46/61 (75%), Positives = 53/61 (86%)
Query: 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQL 60
I ELF+EFG LK A +HYDRSGRSLGTAD+ +ER++DA+KAMKQYNGVPLDGRPM IQL
Sbjct: 16 DIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 75
Query: 61 A 61
Sbjct: 76 V 76
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 54.5 bits (131), Expect = 4e-12
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 1 MIYELFSEFGPLKSAKL-HYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQ 59
M+YE FS GP+ S ++ + RSLG A + +++ +DA +A+ N + G+P++I
Sbjct: 16 MLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 75
Query: 60 LA 61
+
Sbjct: 76 WS 77
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 54.2 bits (130), Expect = 9e-12
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 1 MIYELFSEFGPLKSAKLHYDR--SGRSLGTADLIYERRSDAIKAMKQ-YNGVPLDGRPMQ 57
I ELFS FG LK+ +L +G G + + + DA KA + L GR +
Sbjct: 24 EIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 83
Query: 58 IQLA 61
++ A
Sbjct: 84 LEWA 87
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 51.2 bits (122), Expect = 1e-10
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 1 MIYELFSEFGPLKSAK-LHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQ 59
+Y LF GP+ + + + ++G S G A + + D+ +A+K NG+ + + +++
Sbjct: 18 ELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVS 77
Query: 60 LA 61
A
Sbjct: 78 YA 79
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 50.4 bits (120), Expect = 2e-10
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 1 MIYELFSEFGPLKSAKLHYDR----SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPM 56
+ +FS+ G +KS + + S+G + Y++ A KA+KQ G +DG +
Sbjct: 14 TLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKL 73
Query: 57 QIQLA 61
+++++
Sbjct: 74 EVRIS 78
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 50.4 bits (120), Expect = 4e-10
Identities = 12/60 (20%), Positives = 28/60 (46%)
Query: 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQL 60
+ E+ ++G ++ + + +G + + R DA KA+ N +G+P+ +L
Sbjct: 43 VFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAEL 102
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 49.6 bits (118), Expect = 6e-10
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLI-YERRSDAIKAMKQYNGVPLDGRPMQIQ 59
IYELFS+ G +K + D+ ++ + Y R+DA AM+ NG LD R ++
Sbjct: 23 QIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 82
Query: 60 LAA 62
A
Sbjct: 83 WDA 85
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 49.1 bits (117), Expect = 9e-10
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 18/84 (21%)
Query: 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLA 61
+ +FS++G + +H G A + Y +A A+ +G + G+ + I LA
Sbjct: 33 VEAIFSKYGKIVGCSVHK-------GFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLA 85
Query: 62 ADVSVLENTVPRPVARGGRGGASG 85
G +SG
Sbjct: 86 -----------AEPKVNRSGPSSG 98
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 48.4 bits (115), Expect = 1e-09
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQ 59
+ E F +FG +K + D + RS G + + ++ K + Q + LD + + +
Sbjct: 16 GLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ-SRHELDSKTIDPK 74
Query: 60 LA 61
+A
Sbjct: 75 VA 76
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 48.9 bits (116), Expect = 2e-09
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQL 60
+Y++F ++GP++ + + GTA ++YE DA A +G + R + +
Sbjct: 23 EMYDIFGKYGPIRQI--RVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLY 80
Query: 61 A 61
Sbjct: 81 Y 81
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 47.3 bits (112), Expect = 4e-09
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 1 MIYELFSEFGPLKSAKLHYD-RSGRSLGTADLIYERRSDAIKAMKQYNGVPLDG--RPMQ 57
+ +F ++G + + D +GR G A + Y +R +A +A+ N V +G +P+
Sbjct: 22 QLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 81
Query: 58 IQLA 61
++LA
Sbjct: 82 VRLA 85
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 46.6 bits (110), Expect = 7e-09
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQL 60
++ +FS FG + + R G A +I++ S A A++ G P +PM+IQ
Sbjct: 23 SLHAIFSRFGQILDILVSRSLKMR--GQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 80
Query: 61 A 61
A
Sbjct: 81 A 81
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 46.9 bits (111), Expect = 7e-09
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQL 60
++ + FS FG + ++ G + + + A A+ NG ++G ++
Sbjct: 34 LMRQTFSPFGQIMEIRVF-----PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 88
Query: 61 A 61
Sbjct: 89 G 89
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 46.2 bits (109), Expect = 9e-09
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 1 MIYELFSEFGPLKSAKLHYD-RSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQI 58
+ E+FS++GP+ + YD +S RS G A + +E DA +A ++ NG+ LDGR +++
Sbjct: 25 DLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 83
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 46.6 bits (110), Expect = 9e-09
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQL 60
+I +LFS+ GP KS K+ + + + + DA A+ NG + G+ +++
Sbjct: 24 LILQLFSQIGPCKSCKMITEH-TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 82
Query: 61 A 61
A
Sbjct: 83 A 83
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 46.2 bits (109), Expect = 1e-08
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQ 59
+++ F FG + ++ D + + G A + +E DA A+ N L GR +++
Sbjct: 21 VLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 80
Query: 60 LA 61
LA
Sbjct: 81 LA 82
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 46.2 bits (109), Expect = 1e-08
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 1 MIYELFSEFGPLKSAKLHYD-RSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQ 59
+++ELF + GP+ + + D +G+ G + + DA A+K + + L G+P+++
Sbjct: 25 LLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 84
Query: 60 LA 61
A
Sbjct: 85 KA 86
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 45.5 bits (107), Expect = 2e-08
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 1 MIYELFSEFGPLKSAKLHYD-RSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQ 59
LF G ++S KL D +G+SLG + Y DA KA+ NG+ L + +++
Sbjct: 18 EFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS 77
Query: 60 LA 61
A
Sbjct: 78 YA 79
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 45.4 bits (107), Expect = 2e-08
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQ 59
+ EL + FGPLK+ L D +G S G A Y + +A+ NG+ L + + +Q
Sbjct: 17 QVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 76
Query: 60 LA 61
A
Sbjct: 77 RA 78
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 45.1 bits (106), Expect = 2e-08
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 1 MIYELFSEFGPLKSAKL--HYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQI 58
++Y+ FS FG + +G S G A + + + A++ NG L RP+ +
Sbjct: 14 LLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITV 73
Query: 59 QLA 61
A
Sbjct: 74 SYA 76
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 45.3 bits (107), Expect = 3e-08
Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQL 60
+ +LF ++G +H D+ + E R+ A A + + +PL G+ ++++
Sbjct: 24 EMRKLFEKYGKAGEVFIHKDKG-----FGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 78
Query: 61 A 61
A
Sbjct: 79 A 79
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 45.0 bits (106), Expect = 3e-08
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQL 60
+Y+ FS FG + S K+ D +G S G + +E + A +A+++ NG+ L+ R + +
Sbjct: 24 ALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 82
Query: 61 A 61
Sbjct: 83 F 83
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 45.1 bits (106), Expect = 4e-08
Identities = 13/61 (21%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQL 60
+ ++F +FG + ++ ++ S G + +E +DA +A ++ +G ++GR +++
Sbjct: 27 DLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 85
Query: 61 A 61
A
Sbjct: 86 A 86
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 44.7 bits (105), Expect = 5e-08
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQ 59
+ ELF FG + L D+ +G+S G A + + RR DA +A+ +G D + ++
Sbjct: 24 DLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 83
Query: 60 LA 61
A
Sbjct: 84 WA 85
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 44.3 bits (104), Expect = 6e-08
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 1 MIYELFSEFGPLKSAKLHYDRSGR-SLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQ 59
+ +LFS++G + ++++ D+ S G + +++R +A +A+K NG G I
Sbjct: 22 ELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 81
Query: 60 L 60
+
Sbjct: 82 V 82
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 44.3 bits (104), Expect = 6e-08
Identities = 13/63 (20%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQL 60
+ E+F + ++ + G+S G A + ++ +DA K +++ G +DGR + +
Sbjct: 32 ELKEVFEDALEIR----LVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87
Query: 61 AAD 63
+
Sbjct: 88 TGE 90
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 42.7 bits (100), Expect = 3e-07
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 2 IYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQL 60
+ + FS G ++ ++ DR S RS G A + + A+ G L G P+ +Q
Sbjct: 35 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGL-TGQRLLGVPIIVQA 93
Query: 61 A 61
+
Sbjct: 94 S 94
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 81
Score = 41.7 bits (97), Expect = 5e-07
Identities = 9/62 (14%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 1 MIYELFSEFGPLKSAKLHYDRSG-RSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQ 59
I +L + + + S A + + DA +++ NG+ ++G + +
Sbjct: 17 NIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTK 76
Query: 60 LA 61
++
Sbjct: 77 VS 78
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 41.6 bits (97), Expect = 7e-07
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 16 KLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLA 61
L Y+ G G A + +E R +A A+ N P+ R +++ L
Sbjct: 41 CLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 86
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 40.8 bits (95), Expect = 1e-06
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQL 60
++ FS FG + + R A + YE+ A +A+ + NG ++ +++ +
Sbjct: 19 LLRGAFSPFGNIIDLSMDPPR-----NCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 73
Query: 61 A 61
A
Sbjct: 74 A 74
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 40.9 bits (95), Expect = 1e-06
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 1 MIYELFSEFGPLKSAKLHYDRSGR-SLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQ 59
I E F ++G +K+ L+ DR S G A + YE A+ A + NG + G+ +Q+
Sbjct: 23 EIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 82
Query: 60 LA 61
Sbjct: 83 WC 84
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 40.3 bits (94), Expect = 2e-06
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQ 59
I E F FG ++S +L D + + G + ++ K M++ + +I+
Sbjct: 15 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIK 73
Query: 60 LA 61
+A
Sbjct: 74 VA 75
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 40.5 bits (94), Expect = 2e-06
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 1 MIYELFSEFGPLKSAKLHYD---------RSGRSLGTADLIYERRSDAIKAMKQYNGVPL 51
+ + F + G +K K +G+ G A + YE A A++ ++G
Sbjct: 24 DLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 83
Query: 52 DGRPMQIQLA 61
G +++ LA
Sbjct: 84 QGSKLKVSLA 93
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding
protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 40.5 bits (94), Expect = 2e-06
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 1 MIYELFSEFGPLKSAKLHYDRS-GRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQ 59
+ ++F FG + SAK+ D+ S + Y+ A A++ NG + + +++Q
Sbjct: 34 DLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 93
Query: 60 LA 61
L
Sbjct: 94 LK 95
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 40.3 bits (93), Expect = 2e-06
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQL 60
+ SE + R+G + + +E D KA+ + G+ + G ++++
Sbjct: 29 ELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87
Query: 61 A 61
Sbjct: 88 P 88
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 40.0 bits (93), Expect = 2e-06
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQL 60
MI + F+ P +R + A + + R DA++AMK NG LDG P+++ L
Sbjct: 24 MIEKEFNNIKPGA-----VERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 78
Query: 61 A 61
A
Sbjct: 79 A 79
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 40.5 bits (94), Expect = 3e-06
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 12/87 (13%)
Query: 1 MIYELFSEFGPLKSAKLHYDRSGR-SLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQ 59
+ +LFS +GPL D + G A + + A+KA + +G GR + +
Sbjct: 24 DLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83
Query: 60 LAADVSVLENTVPRPVARGGRGGASGG 86
+ + G S G
Sbjct: 84 PS-----------TIKKEASQSGPSSG 99
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 39.8 bits (92), Expect = 3e-06
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 2 IYELFSEFGPLKSAKLHYDR----SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPM 56
E F +FG + ++ S +A + Y R DA++A++ N V +DGR +
Sbjct: 28 RPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 86
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 40.1 bits (93), Expect = 3e-06
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 5/66 (7%)
Query: 1 MIYELFSEFGPLKSA---KLHYDRSGRSLGTADLIYERRSDAIKAMKQYNG--VPLDGRP 55
I E ++ ++ G A + YE A A ++ + L G
Sbjct: 17 EILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 76
Query: 56 MQIQLA 61
+ + A
Sbjct: 77 IAVDWA 82
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 39.5 bits (91), Expect = 9e-06
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 33 YERRSDAIKAMKQYNGVPLDGRPMQIQLAADVSVLENTVPRPVARGGRGGASG 85
++ S A +A+ NG + + +++ LAA RP G G +G
Sbjct: 91 FQSGSSAQQAIAGLNGFNILNKRLKVALAASGH------QRPGIAGAVGDGNG 137
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 38.5 bits (89), Expect = 1e-05
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQL 60
I ++F ++G ++ L R G A + +E DA A+ +G DG ++++
Sbjct: 30 DIEDVFYKYGAIRDIDLKNRRGGP--PFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 87
Query: 61 A 61
Sbjct: 88 P 88
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 38.2 bits (88), Expect = 1e-05
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 18 HYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLA 61
+ RS G + +E DA AM NG +DGR +++ A
Sbjct: 39 KDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 37.0 bits (85), Expect = 3e-05
Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 1 MIYELFSEFGPLKSAKLH-YDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQ 59
+ F +FG + A L + R G + +E K + + ++ + ++ +
Sbjct: 15 DVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI-HFHEINNKMVECK 73
Query: 60 LA 61
A
Sbjct: 74 KA 75
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 37.7 bits (87), Expect = 3e-05
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPL--DGRPMQI 58
+++++FS+FG + + A L Y A A +G + ++I
Sbjct: 23 VLHQIFSKFGTVLKIITFTKNNQ---FQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 79
Query: 59 QLA 61
+
Sbjct: 80 DFS 82
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 37.4 bits (86), Expect = 4e-05
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 27 GTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLA 61
G Y+ + A+ AM+ NG GR +++ A
Sbjct: 51 GYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 37.0 bits (85), Expect = 4e-05
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQL 60
+++L ++ Y R+ TA + A A++ ++ G+ + +QL
Sbjct: 21 EVHDLLKDYDL------KYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQL 74
Query: 61 A 61
Sbjct: 75 Q 75
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 37.1 bits (85), Expect = 5e-05
Identities = 12/66 (18%), Positives = 21/66 (31%)
Query: 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQL 60
+ + FG + S ++ D SG S G E + +NG + P
Sbjct: 34 ELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 93
Query: 61 AADVSV 66
+
Sbjct: 94 TEPLLC 99
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 36.4 bits (84), Expect = 8e-05
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLA 61
+ S+FG ++ L G A + + +A ++ +G GR + Q
Sbjct: 36 LRVECSKFGQIRKLLLFDRHPD---GVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAW 92
Query: 62 ADVS 65
+
Sbjct: 93 DGTT 96
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 36.3 bits (83), Expect = 8e-05
Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 7/69 (10%)
Query: 1 MIYELFSEFGPLKSAKL------HYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGR 54
+ + F+ L + + A L + + +AM ++G+ G+
Sbjct: 17 AMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 75
Query: 55 PMQIQLAAD 63
++I+ D
Sbjct: 76 SLKIRRPHD 84
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 35.7 bits (82), Expect = 2e-04
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 2 IYELFSEFGPLKSAKLHYD---RSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQI 58
+ + S++G +KS ++ G + + D KAM+ G R +
Sbjct: 31 VRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVT 90
Query: 59 QLA 61
+
Sbjct: 91 KYC 93
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 35.1 bits (80), Expect = 2e-04
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 2 IYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQY--NGVPLDGRPMQIQ 59
+ +L FG + + + + A + DA A+ Y + G+P+++
Sbjct: 26 LLQLVEPFGVISNHLILNKIN-----EAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 80
Query: 60 LA 61
L+
Sbjct: 81 LS 82
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 35.1 bits (80), Expect = 3e-04
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 1 MIYELFSEFGPLKSAKLHYDR-SGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQ 59
+ LF+ F K + + +GR G A + + + A +A+ NG L G+ + I+
Sbjct: 34 DLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 93
Query: 60 LA 61
Sbjct: 94 FG 95
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 86
Score = 34.3 bits (78), Expect = 4e-04
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 18 HYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLA 61
+ A +++E + A +A++ N L R + + LA
Sbjct: 40 GQKEHSFNNCCAFMVFENKDSAERALQ-MNRSLLGNREISVSLA 82
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 34.7 bits (79), Expect = 4e-04
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQL 60
++ LF +G ++ K+ +++ A + + A AM NG L G+P++I L
Sbjct: 19 SLFILFGVYGDVQRVKILFNKKEN----ALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 74
Query: 61 AADVSVLENTVPRPVARGGRGGASGGYRN 89
+ V P G + Y N
Sbjct: 75 SKH-----QNVQLPREGQEDQGLTKDYGN 98
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 104
Score = 34.8 bits (79), Expect = 4e-04
Identities = 9/74 (12%), Positives = 24/74 (32%), Gaps = 5/74 (6%)
Query: 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQL 60
LF + + + +S + + A A + + G+ M++
Sbjct: 26 KFESLFRTYDKDTTFQYF-----KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYF 80
Query: 61 AADVSVLENTVPRP 74
A + + + + P
Sbjct: 81 AQTLHIGSSHLAPP 94
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 33.6 bits (76), Expect = 8e-04
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 1 MIYELFSEFGPLKSAKLHYDRSGR-SLGTADLIYERRSDAIKAMKQYN------GVPLDG 53
+ E+ +FG LK ++ S G A + + A K + + G+ LDG
Sbjct: 24 ALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 83
Query: 54 RPMQIQLA 61
R +++ LA
Sbjct: 84 RQLKVDLA 91
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 33.1 bits (75), Expect = 0.001
Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 17/85 (20%)
Query: 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQL 60
+ E FS++G + + + T + A + + G + I
Sbjct: 21 ELREFFSQYGDVMDVFIPKPFRAFAFVT----FADDQIAQSLCG--EDLIIKGISVHISN 74
Query: 61 AADVSVLENTVPRPVARGGRGGASG 85
A P G +SG
Sbjct: 75 A-----------EPKHNSNSGPSSG 88
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 32.8 bits (74), Expect = 0.001
Identities = 4/25 (16%), Positives = 10/25 (40%)
Query: 33 YERRSDAIKAMKQYNGVPLDGRPMQ 57
++ S A KA+ + + +
Sbjct: 47 FDSPSAAQKAVTALKASGVQAQMAK 71
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 31.6 bits (71), Expect = 0.006
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 28 TADLIYERRSDAIKAMKQYNGVPLDGRPMQIQL 60
A + YE A A + G PL G ++++
Sbjct: 55 FAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 31.5 bits (70), Expect = 0.009
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 1 MIYELFSEFGPLKSAK-LHYDRSGRSLGTADLIYERRSDAIKAMKQYNG 48
+ F ++G L + + RS G + Y + AM
Sbjct: 22 SLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPH 70
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 30.3 bits (67), Expect = 0.010
Identities = 11/50 (22%), Positives = 20/50 (40%)
Query: 18 HYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADVSVL 67
Y + GTA + A A+ ++ L R + +QL ++L
Sbjct: 25 KYCFVDKYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQPTDALL 74
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 29.7 bits (66), Expect = 0.026
Identities = 8/61 (13%), Positives = 17/61 (27%)
Query: 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQL 60
I E F + L D++ + N L + +++ +
Sbjct: 31 SIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDV 90
Query: 61 A 61
A
Sbjct: 91 A 91
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 28.2 bits (62), Expect = 0.10
Identities = 4/34 (11%), Positives = 11/34 (32%)
Query: 28 TADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLA 61
+ Y R+ D A+++ + +
Sbjct: 52 MGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYI 85
>d3begb1 d.58.7.1 (B:121-207) Splicing factor,
arginine/serine-rich 1, SFRS1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 87
Score = 27.5 bits (60), Expect = 0.13
Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 11/57 (19%)
Query: 33 YERRSDAIKAMKQYNGVPLDGRPMQIQLAADVSVLENTVPRPVARGGRGGASGGYRN 89
+ R+ D A+++ + + R G R + G R+
Sbjct: 42 FVRKEDMTYAVRKLDNTKFRSHEGETAYI-----------RVKVDGPRSPSYGRSRS 87
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 26.8 bits (58), Expect = 0.30
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 21 RSGRSLGTADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLA 61
TA + + +A KA + P+ ++ A
Sbjct: 41 LLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81
>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 99
Score = 26.5 bits (57), Expect = 0.46
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 1 MIYELFSEFGPLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQYNGVP--LDGRPMQI 58
+ +L +G +K+ L + A + E R DA+ + GR +++
Sbjct: 35 AVLKLAEPYGKIKNYILMRMK-----SQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 89
Query: 59 QLA 61
L+
Sbjct: 90 DLS 92
>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B
subunit, PccB {Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 26.6 bits (58), Expect = 0.53
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 12 LKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQY 46
L A +H +SG A + + A+ ++
Sbjct: 213 LGGAMVHNQKSG----NAHFLADNDEKAMSLVRTL 243
>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit
{Acidaminococcus fermentans [TaxId: 905]}
Length = 287
Score = 26.5 bits (57), Expect = 0.63
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 11 PLKSAKLHYDRSGRSLGTADLIYERRSDAIKAMKQY 46
P + +HY +G +Y ++ +K+Y
Sbjct: 250 PPGAVDIHYTETG----FMREVYASEEGVLEGIKKY 281
>d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia
coli [TaxId: 562]}
Length = 336
Score = 25.3 bits (54), Expect = 1.7
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 39 AIKAMKQYNGVPLDGRPMQIQLAADVSVLENTVPRPVARGGRGGASG 85
+ +++ G P + Q A V+ + T P+ G A+G
Sbjct: 22 TFQQLRRITGTPFEALVRQKVPAKPVNCMGLTFKNPL-----GLAAG 63
>d1ez0a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Vibrio harveyi [TaxId: 669]}
Length = 504
Score = 25.1 bits (53), Expect = 2.0
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 29 ADLIYERRSDAIKAMKQYNGVPLDGRPMQIQLAADV 64
A + R D I +P +I A+
Sbjct: 58 ASELEARSDDIIARAHLETALPEVRLTGEIARTANQ 93
>d1wfqa_ b.40.4.5 (A:) Cold shock domain protein E1 (UNR) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 23.0 bits (49), Expect = 6.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 79 GRGGASGGYRNGTAPTYRPRGGLKK 103
G G+SGGY NGT+ R G ++K
Sbjct: 1 GSSGSSGGYPNGTSAALRETGVIEK 25
>d1s9ra_ d.126.1.4 (A:) Arginine deiminase {Mycoplasma arginini
[TaxId: 2094]}
Length = 409
Score = 23.6 bits (50), Expect = 7.0
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Query: 6 FSEFGPLKSAKLHYDRSGRSLG------TADLIYERRSDAIKAMKQYN 47
+SE G L+S +H GR + +L++ ++ A K++
Sbjct: 13 YSEIGELESVLVH--EPGREIDYITPARLDELLFSAILESHDARKEHK 58
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.137 0.400
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 382,965
Number of extensions: 16005
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 73
Length of query: 105
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 40
Effective length of database: 1,515,146
Effective search space: 60605840
Effective search space used: 60605840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.5 bits)