BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1929
         (95 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8BTI8|SRRM2_MOUSE Serine/arginine repetitive matrix protein 2 OS=Mus musculus
           GN=Srrm2 PE=1 SV=3
          Length = 2703

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 41/58 (70%), Gaps = 2/58 (3%)

Query: 20  VKETHQIAEAQLEKNARLRDAFGISEYFVEGSSLDPTRREKEA--LAQAAAKKYALVR 75
           V ETHQ+AE   +KN RLR AFGIS+ +V+GSS DP RR +EA  +A    K Y+LVR
Sbjct: 118 VTETHQLAELNEKKNERLRAAFGISDSYVDGSSFDPQRRAREAKQIAPEPPKPYSLVR 175


>sp|Q9UQ35|SRRM2_HUMAN Serine/arginine repetitive matrix protein 2 OS=Homo sapiens
           GN=SRRM2 PE=1 SV=2
          Length = 2752

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 42/63 (66%), Gaps = 2/63 (3%)

Query: 15  GSYISVKETHQIAEAQLEKNARLRDAFGISEYFVEGSSLDPTRREKEA--LAQAAAKKYA 72
           G   +V ETHQ+AE   +KN RLR AFGIS+ +V+GSS DP RR +EA   A    K Y+
Sbjct: 113 GQRPAVTETHQLAELNEKKNERLRAAFGISDSYVDGSSFDPQRRAREAKQPAPEPPKPYS 172

Query: 73  LVR 75
           LVR
Sbjct: 173 LVR 175


>sp|Q7RYH7|CWC21_NEUCR Pre-mRNA-splicing factor cwc-21 OS=Neurospora crassa (strain ATCC
           24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
           GN=cwc-21 PE=3 SV=1
          Length = 344

 Score = 30.8 bits (68), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 24/34 (70%)

Query: 18  ISVKETHQIAEAQLEKNARLRDAFGISEYFVEGS 51
           + + + H++A+A+++++ RLR A  IS  + EGS
Sbjct: 116 LKMHQVHELADAKIKESERLRQALKISRDYQEGS 149


>sp|Q7NLX2|PHK_GLOVI Probable phosphoketolase OS=Gloeobacter violaceus (strain PCC 7421)
           GN=glr0997 PE=3 SV=1
          Length = 793

 Score = 29.6 bits (65), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)

Query: 25  QIAEAQLEKNARLRDAFGISEYFVEGSSLDPTRR 58
           +I+  +LEK   L + +G   YFVEGS  +PT +
Sbjct: 222 RISHEELEK---LFEGYGYKPYFVEGSEYEPTHQ 252


>sp|Q2S8Y9|SYY_HAHCH Tyrosine--tRNA ligase OS=Hahella chejuensis (strain KCTC 2396)
           GN=tyrS PE=3 SV=1
          Length = 400

 Score = 28.9 bits (63), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 29  AQLEKN-ARLRDAFGISEYFVEGSSLDPT---RREKEALAQAAAKKYALV 74
           A L KN A  +D  G    FV+G+ +DP+   +R  E + QA  KK A +
Sbjct: 348 ADLVKNGAAAKDVLGRGAVFVDGAQVDPSFMVQRGSEHVIQAGKKKIAQI 397


>sp|A4SNB0|DADA_AERS4 D-amino acid dehydrogenase small subunit OS=Aeromonas salmonicida
           (strain A449) GN=dadA PE=3 SV=1
          Length = 417

 Score = 28.9 bits (63), Expect = 9.7,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 23  THQIAEAQLEKNARLRDAFGISEYFVEGSSLDPTRRE--KEALAQAAAKKYALVRTPSPE 80
           T Q+  +Q + +A  RD   + EY V   SLD +  E  + ALA+   K    +R P  E
Sbjct: 137 TLQLFRSQAQLDASKRDIEVLEEYGVPYQSLDASGCEGVEPALARVRGKIVGGLRLPGDE 196

Query: 81  LGD 83
            GD
Sbjct: 197 TGD 199


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.127    0.339 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,737,033
Number of Sequences: 539616
Number of extensions: 1044972
Number of successful extensions: 2695
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2682
Number of HSP's gapped (non-prelim): 24
length of query: 95
length of database: 191,569,459
effective HSP length: 65
effective length of query: 30
effective length of database: 156,494,419
effective search space: 4694832570
effective search space used: 4694832570
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)