Query psy1929
Match_columns 95
No_of_seqs 63 out of 65
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 19:54:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1929.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1929hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c9l_Y EB1, zebra, BZLF1 trans 36.7 24 0.00082 22.3 2.4 19 23-41 27-45 (63)
2 2fs1_A PSD-1; solution structu 29.1 22 0.00075 22.1 1.3 26 24-50 7-32 (56)
3 2j5y_A GA module, peptostrepto 27.1 73 0.0025 20.0 3.5 25 22-47 11-35 (61)
4 1fs1_B SKP1, cyclin A/CDK2-ass 25.8 25 0.00085 23.5 1.2 15 34-48 126-140 (141)
5 3bs3_A Putative DNA-binding pr 25.5 49 0.0017 18.3 2.3 19 33-51 54-72 (76)
6 3v7d_A Suppressor of kinetocho 25.4 52 0.0018 22.8 2.9 15 33-47 137-151 (169)
7 2i5i_A UPF0249 protein EF_3048 24.0 39 0.0013 24.9 2.1 29 23-52 103-131 (263)
8 2wiu_B HTH-type transcriptiona 23.0 32 0.0011 19.7 1.2 21 32-52 55-75 (88)
9 2c52_B Nuclear receptor coacti 22.9 26 0.00088 22.1 0.8 21 34-56 29-50 (59)
10 1gjs_A Immunoglobulin G bindin 22.1 35 0.0012 21.8 1.2 26 24-50 18-43 (65)
11 3qwg_A ESX-1 secretion-associa 21.3 33 0.0011 22.6 1.1 21 31-51 59-79 (123)
12 2ewt_A BLDD, putative DNA-bind 21.1 61 0.0021 17.7 2.1 17 32-48 53-69 (71)
13 3r1f_A ESX-1 secretion-associa 21.0 35 0.0012 22.7 1.2 20 31-50 61-80 (135)
No 1
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=36.70 E-value=24 Score=22.30 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q psy1929 23 THQIAEAQLEKNARLRDAF 41 (95)
Q Consensus 23 tH~lA~ak~~en~rlr~Af 41 (95)
..++|++|-.||+|||-.+
T Consensus 27 ~r~vaaaks~en~rlr~l~ 45 (63)
T 2c9l_Y 27 YREVAAAKSSENDRLRLLL 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchHHHHHH
Confidence 3578999999999999655
No 2
>2fs1_A PSD-1; solution structure, protein binding; NMR {Finegoldia magna atcc 29328}
Probab=29.11 E-value=22 Score=22.13 Aligned_cols=26 Identities=23% Similarity=0.583 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCccccC
Q psy1929 24 HQIAEAQLEKNARLRDAFGISEYFVEG 50 (95)
Q Consensus 24 H~lA~ak~~en~rlr~AfGIs~dYveG 50 (95)
-.|++||+.-..-|.. .|||..|.++
T Consensus 7 ~~L~eAKe~Ai~El~~-~GIsd~y~~~ 32 (56)
T 2fs1_A 7 NSLAQAKEAAIKELKQ-YGIGDYYIKL 32 (56)
T ss_dssp HHHHHHHHHHHHHHHH-HCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-cCchHHHHHH
Confidence 5688899988888865 5997777655
No 3
>2j5y_A GA module, peptostreptococcal albumin-binding protein; protein binding, cell WALL, peptidoglycan-anchor; 1.4A {Peptostreptococcus magnus} SCOP: a.8.1.2 PDB: 2vdb_B* 1gab_A 1prb_A 1tf0_B*
Probab=27.14 E-value=73 Score=20.05 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCcc
Q psy1929 22 ETHQIAEAQLEKNARLRDAFGISEYF 47 (95)
Q Consensus 22 etH~lA~ak~~en~rlr~AfGIs~dY 47 (95)
..-.|++||+.-..-|..+ ||.+||
T Consensus 11 ~~~~L~eAKe~Ai~el~~~-GItsd~ 35 (61)
T 2j5y_A 11 DQWLLKNAKEDAIAELKKA-GITSDF 35 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCCHH
T ss_pred cHHHHHHHHHHHHHHHHHc-CCchHH
Confidence 5678999999999988764 995544
No 4
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=25.76 E-value=25 Score=23.52 Aligned_cols=15 Identities=27% Similarity=0.550 Sum_probs=7.3
Q ss_pred HHHHHHHhCCCCccc
Q psy1929 34 NARLRDAFGISEYFV 48 (95)
Q Consensus 34 n~rlr~AfGIs~dYv 48 (95)
-+-+|..|||..||.
T Consensus 126 ~eeiR~~f~I~~d~t 140 (141)
T 1fs1_B 126 PEEIRKTFNIKNDFT 140 (141)
T ss_dssp HHHHHHHTC------
T ss_pred HHHHHHHcCCCCCCC
Confidence 356899999999985
No 5
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=25.53 E-value=49 Score=18.26 Aligned_cols=19 Identities=0% Similarity=0.039 Sum_probs=13.2
Q ss_pred HHHHHHHHhCCCCccccCC
Q psy1929 33 KNARLRDAFGISEYFVEGS 51 (95)
Q Consensus 33 en~rlr~AfGIs~dYveGs 51 (95)
...+|..+||++.+|.=+.
T Consensus 54 ~l~~ia~~l~~~~~~l~~~ 72 (76)
T 3bs3_A 54 MLVKVAELLNVDPRQLING 72 (76)
T ss_dssp HHHHHHHHHTSCGGGGBC-
T ss_pred HHHHHHHHHCcCHHHHhcC
Confidence 3567888889888776444
No 6
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=25.43 E-value=52 Score=22.78 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=12.2
Q ss_pred HHHHHHHHhCCCCcc
Q psy1929 33 KNARLRDAFGISEYF 47 (95)
Q Consensus 33 en~rlr~AfGIs~dY 47 (95)
--+-+|..|||..||
T Consensus 137 tpeeiR~~f~I~nd~ 151 (169)
T 3v7d_A 137 SPEEIRRTFNIVNDF 151 (169)
T ss_dssp CHHHHHHHHTCCCCC
T ss_pred CHHHHHHHcCCCCCC
Confidence 346789999999984
No 7
>2i5i_A UPF0249 protein EF_3048; putative cellobiose-phosphate cleavage protein, structural G joint center for structural genomics, JCSG; HET: MSE; 1.70A {Enterococcus faecalis} SCOP: c.6.2.8
Probab=24.00 E-value=39 Score=24.85 Aligned_cols=29 Identities=3% Similarity=-0.020 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCccccCCC
Q psy1929 23 THQIAEAQLEKNARLRDAFGISEYFVEGSS 52 (95)
Q Consensus 23 tH~lA~ak~~en~rlr~AfGIs~dYveGss 52 (95)
..++...=..+.+++.+ +|+..+|++|=.
T Consensus 103 ~~ev~~El~AQi~~f~~-~G~~p~hiD~H~ 131 (263)
T 2i5i_A 103 LEEVYNEWDAQIISFMK-SGRRPDHIDSHH 131 (263)
T ss_dssp HHHHHHHHHHHHHHHGG-GSSCCSCEEEGG
T ss_pred HHHHHHHHHHHHHHHHH-cCCCCCcccccc
Confidence 57777777888999999 999999999854
No 8
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=22.99 E-value=32 Score=19.70 Aligned_cols=21 Identities=5% Similarity=0.135 Sum_probs=14.8
Q ss_pred HHHHHHHHHhCCCCccccCCC
Q psy1929 32 EKNARLRDAFGISEYFVEGSS 52 (95)
Q Consensus 32 ~en~rlr~AfGIs~dYveGss 52 (95)
....+|..+||++.+|..|..
T Consensus 55 ~~l~~i~~~l~~~~~~l~~~~ 75 (88)
T 2wiu_B 55 TTFFKILQSLELSMTLCDAKN 75 (88)
T ss_dssp HHHHHHHHHTTCEEEEEC---
T ss_pred HHHHHHHHHhCCCHHHhccCC
Confidence 446788899999999887654
No 9
>2c52_B Nuclear receptor coactivator 1; transferase, bromodomain, metal-binding, methylation, nuclear protein, transcription, transcription regulation; NMR {Homo sapiens} SCOP: a.153.1.1
Probab=22.92 E-value=26 Score=22.05 Aligned_cols=21 Identities=38% Similarity=0.398 Sum_probs=14.5
Q ss_pred HHHHHHHhCCCCcccc-CCCCChh
Q psy1929 34 NARLRDAFGISEYFVE-GSSLDPT 56 (95)
Q Consensus 34 n~rlr~AfGIs~dYve-GssFd~e 56 (95)
.+-+-+|+|| +-|. |++|++.
T Consensus 29 LeEiDrALGI--~lv~Q~q~~e~~ 50 (59)
T 2c52_B 29 LAELDRALGI--DKLVQGGGLDVL 50 (59)
T ss_dssp TCTTGGGTSS--TTTTTCSSSCCC
T ss_pred HHHHHHHhhH--HHhhcccccCCc
Confidence 4456679999 4444 8888754
No 10
>1gjs_A Immunoglobulin G binding protein G; immunoglobulin-binding protein, bacterial surface protein, albumin binding; NMR {Streptococcus SP} SCOP: a.8.1.2 PDB: 1gjt_A
Probab=22.12 E-value=35 Score=21.82 Aligned_cols=26 Identities=31% Similarity=0.615 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCccccC
Q psy1929 24 HQIAEAQLEKNARLRDAFGISEYFVEG 50 (95)
Q Consensus 24 H~lA~ak~~en~rlr~AfGIs~dYveG 50 (95)
-.|+++|+.-...|.+ .|||..|+++
T Consensus 18 ~aL~eAKe~Ai~EL~~-~GIsd~y~~~ 43 (65)
T 1gjs_A 18 NSLAEAKVLANRELDK-YGVSDYYKNL 43 (65)
T ss_dssp HHHHHHHHHHHHHHHH-HTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-cCccHHHHHh
Confidence 5788899888888865 5998778765
No 11
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=21.34 E-value=33 Score=22.62 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhCCCCccccCC
Q psy1929 31 LEKNARLRDAFGISEYFVEGS 51 (95)
Q Consensus 31 ~~en~rlr~AfGIs~dYveGs 51 (95)
..-..+|.++|||+.+|.=|.
T Consensus 59 ~~~l~~iA~~f~V~~~yl~~~ 79 (123)
T 3qwg_A 59 GATMAALANFFRIKAAYFTDD 79 (123)
T ss_dssp HHHHHHHHHHTTSCTHHHHCH
T ss_pred HHHHHHHHHHhCCCHHHHcCC
Confidence 345678999999999997663
No 12
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=21.07 E-value=61 Score=17.65 Aligned_cols=17 Identities=24% Similarity=0.383 Sum_probs=12.7
Q ss_pred HHHHHHHHHhCCCCccc
Q psy1929 32 EKNARLRDAFGISEYFV 48 (95)
Q Consensus 32 ~en~rlr~AfGIs~dYv 48 (95)
....+|..+|||+.+|.
T Consensus 53 ~~l~~la~~l~v~~~~l 69 (71)
T 2ewt_A 53 QRLAELADFYGVPVQEL 69 (71)
T ss_dssp HHHHHHHHHHTSCGGGG
T ss_pred HHHHHHHHHHCcCHHHH
Confidence 34567888999988764
No 13
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=20.98 E-value=35 Score=22.74 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhCCCCccccC
Q psy1929 31 LEKNARLRDAFGISEYFVEG 50 (95)
Q Consensus 31 ~~en~rlr~AfGIs~dYveG 50 (95)
..-..+|.++|||+.||.=|
T Consensus 61 ~~~l~~iA~~f~V~~~yl~~ 80 (135)
T 3r1f_A 61 GATMAALANFFRIKAAYFTD 80 (135)
T ss_dssp HHHHHHHHHHHTSCTHHHHC
T ss_pred HHHHHHHHHHhCCCHHHHcC
Confidence 45567899999999999755
Done!