Query psy1929
Match_columns 95
No_of_seqs 63 out of 65
Neff 3.2
Searched_HMMs 13730
Date Fri Aug 16 19:54:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1929.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1929hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nexa1 a.157.1.1 (A:116-185) 41.4 5.8 0.00042 23.2 1.6 16 34-49 48-63 (70)
2 d2icta1 a.35.1.3 (A:8-94) Anti 38.7 3.6 0.00026 24.3 0.3 14 35-48 47-60 (87)
3 d1ywqa1 d.90.1.1 (A:2-200) Hyp 24.4 15 0.0011 22.8 1.6 14 34-47 156-169 (199)
4 d1gjsa_ a.8.1.2 (A:) IgG bindi 24.3 22 0.0016 21.2 2.2 25 22-47 16-40 (65)
5 d2j5ya1 a.8.1.2 (A:1-53) PAB { 22.0 27 0.002 20.0 2.2 23 24-47 5-27 (53)
6 d1noxa_ d.90.1.1 (A:) NADH oxi 21.4 22 0.0016 21.9 1.9 15 34-48 157-171 (200)
7 d2croa_ a.35.1.2 (A:) cro 434 21.0 11 0.00081 20.4 0.3 13 35-47 48-60 (65)
8 d2ifaa1 d.90.1.1 (A:2-200) Hyp 20.7 20 0.0015 22.3 1.6 14 34-47 154-167 (199)
9 d1lbua2 d.65.1.1 (A:84-213) Zn 16.5 68 0.005 19.9 3.5 32 17-48 19-55 (130)
10 d1h0ca_ c.67.1.3 (A:) Alanine- 16.2 58 0.0042 21.6 3.2 23 25-47 49-71 (388)
No 1
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=41.39 E-value=5.8 Score=23.22 Aligned_cols=16 Identities=25% Similarity=0.465 Sum_probs=13.2
Q ss_pred HHHHHHHhCCCCcccc
Q psy1929 34 NARLRDAFGISEYFVE 49 (95)
Q Consensus 34 n~rlr~AfGIs~dYve 49 (95)
-+-+|..|||+.||.+
T Consensus 48 ~eeiR~~f~I~~D~t~ 63 (70)
T d1nexa1 48 PEEIRRTFNIVNDFTP 63 (70)
T ss_dssp HHHHHHHHTCCCCCCH
T ss_pred HHHHHHHhCCCCCCCH
Confidence 4678999999999753
No 2
>d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli [TaxId: 562]}
Probab=38.68 E-value=3.6 Score=24.26 Aligned_cols=14 Identities=21% Similarity=0.185 Sum_probs=12.2
Q ss_pred HHHHHHhCCCCccc
Q psy1929 35 ARLRDAFGISEYFV 48 (95)
Q Consensus 35 ~rlr~AfGIs~dYv 48 (95)
.+|..+||||.+|.
T Consensus 47 ~kla~~lgvs~~~~ 60 (87)
T d2icta1 47 IKLSVVIGSSPQMW 60 (87)
T ss_dssp HHHHHHTCSCHHHH
T ss_pred HHHHHHHCcCHHHH
Confidence 48999999999875
No 3
>d1ywqa1 d.90.1.1 (A:2-200) Hypothetical oxidoreductase BC1844 {Bacillus cereus [TaxId: 1396]}
Probab=24.38 E-value=15 Score=22.83 Aligned_cols=14 Identities=14% Similarity=0.527 Sum_probs=11.1
Q ss_pred HHHHHHHhCCCCcc
Q psy1929 34 NARLRDAFGISEYF 47 (95)
Q Consensus 34 n~rlr~AfGIs~dY 47 (95)
.+.++++|||+++|
T Consensus 156 ~~~v~e~l~iP~~~ 169 (199)
T d1ywqa1 156 DAEVKETWNIPAEW 169 (199)
T ss_dssp HHHHHHHTTCCTTE
T ss_pred hHHHHHHhCCCCCC
Confidence 35788889998876
No 4
>d1gjsa_ a.8.1.2 (A:) IgG binding protein G {Streptococcus sp., group G [TaxId: 1306]}
Probab=24.33 E-value=22 Score=21.17 Aligned_cols=25 Identities=32% Similarity=0.752 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCcc
Q psy1929 22 ETHQIAEAQLEKNARLRDAFGISEYF 47 (95)
Q Consensus 22 etH~lA~ak~~en~rlr~AfGIs~dY 47 (95)
+.-.|++||+.-+.-|.. .|||..|
T Consensus 16 ~~~~L~~AKe~Ai~Elk~-yGisdyy 40 (65)
T d1gjsa_ 16 DANSLAEAKVLANRELDK-YGVSDYY 40 (65)
T ss_dssp THHHHHHHHHHHHHHHHH-HTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHH-cCchHHH
Confidence 456889999998888865 6997666
No 5
>d2j5ya1 a.8.1.2 (A:1-53) PAB {Peptostreptococcus magnus [TaxId: 1260]}
Probab=22.03 E-value=27 Score=20.03 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcc
Q psy1929 24 HQIAEAQLEKNARLRDAFGISEYF 47 (95)
Q Consensus 24 H~lA~ak~~en~rlr~AfGIs~dY 47 (95)
.-|..||++-..-|.. .||++||
T Consensus 5 ~~Lk~AKe~AI~eLK~-~GIts~~ 27 (53)
T d2j5ya1 5 WLLKNAKEDAIAELKK-AGITSDF 27 (53)
T ss_dssp HHHHHHHHHHHHHHHH-TTCCCHH
T ss_pred HHHHHHHHHHHHHHHH-cCccHHH
Confidence 3467788887777765 5997766
No 6
>d1noxa_ d.90.1.1 (A:) NADH oxidase {Thermus thermophilus, HB8 [TaxId: 274]}
Probab=21.37 E-value=22 Score=21.91 Aligned_cols=15 Identities=20% Similarity=0.383 Sum_probs=12.1
Q ss_pred HHHHHHHhCCCCccc
Q psy1929 34 NARLRDAFGISEYFV 48 (95)
Q Consensus 34 n~rlr~AfGIs~dYv 48 (95)
++.|++.|||+++|.
T Consensus 157 ~~~l~~~l~ip~~~~ 171 (200)
T d1noxa_ 157 PERVRAILGLPSRAA 171 (200)
T ss_dssp HHHHHHHHTCCTTCE
T ss_pred HHHHHHHcCCCCCCE
Confidence 367999999998873
No 7
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=21.03 E-value=11 Score=20.37 Aligned_cols=13 Identities=8% Similarity=0.092 Sum_probs=10.4
Q ss_pred HHHHHHhCCCCcc
Q psy1929 35 ARLRDAFGISEYF 47 (95)
Q Consensus 35 ~rlr~AfGIs~dY 47 (95)
.+|.++|||+.+|
T Consensus 48 ~~ia~~l~v~~~~ 60 (65)
T d2croa_ 48 FEIAMALNCDPVW 60 (65)
T ss_dssp HHHHHHTTSCHHH
T ss_pred HHHHHHhCCCHHH
Confidence 4677899999877
No 8
>d2ifaa1 d.90.1.1 (A:2-200) Hypothetical protein Smu.260 {Streptococcus mutans [TaxId: 1309]}
Probab=20.74 E-value=20 Score=22.32 Aligned_cols=14 Identities=7% Similarity=0.480 Sum_probs=11.8
Q ss_pred HHHHHHHhCCCCcc
Q psy1929 34 NARLRDAFGISEYF 47 (95)
Q Consensus 34 n~rlr~AfGIs~dY 47 (95)
.+.++++|||+++|
T Consensus 154 ~~~v~~~l~iP~~~ 167 (199)
T d2ifaa1 154 DAQVAEKYDLPTNW 167 (199)
T ss_dssp HHHHHHHTTCCTTE
T ss_pred hHHHHHHcCCCCCC
Confidence 47889999999876
No 9
>d1lbua2 d.65.1.1 (A:84-213) Zn2+ DD-carboxypeptidase C-terminal catalytic domain {Streptomyces albus G [TaxId: 1962]}
Probab=16.48 E-value=68 Score=19.90 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=19.0
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHHhC-----CCCccc
Q psy1929 17 YISVKETHQIAEAQLEKNARLRDAFG-----ISEYFV 48 (95)
Q Consensus 17 r~~~~etH~lA~ak~~en~rlr~AfG-----Is~dYv 48 (95)
.....++..-+-.-..+.+.||++|| |++.|.
T Consensus 19 ~~~~~~~~~n~l~~~~~L~~lR~~~G~~Pi~ItSgYR 55 (130)
T d1lbua2 19 KVSAATARANALVTMWKLQAMRHAMGDKPITVNGGFR 55 (130)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHTTSCCCCEEECCC
T ss_pred CCCchhhHHhHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 33333444433333456899999998 566664
No 10
>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.19 E-value=58 Score=21.56 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcc
Q psy1929 25 QIAEAQLEKNARLRDAFGISEYF 47 (95)
Q Consensus 25 ~lA~ak~~en~rlr~AfGIs~dY 47 (95)
+.-+.-++-.+.|++.||++++|
T Consensus 49 ~f~~i~~ea~~~l~~llg~~~~~ 71 (388)
T d1h0ca_ 49 DMYQIMDEIKEGIQYVFQTRNPL 71 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCSE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCc
Confidence 44556677789999999999987
Done!