RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1929
(95 letters)
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 29.7 bits (66), Expect = 0.20
Identities = 25/98 (25%), Positives = 33/98 (33%), Gaps = 8/98 (8%)
Query: 3 RFQRHSSPLSRVGSYISVKETHQIAEAQLEKNARLRDAFGISEYFVEGSSLDPTRRE--- 59
R H SP + V SY + E Q L + F Y D E
Sbjct: 442 RLPPHLSPFASVDSYDPRASLMTMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQ 501
Query: 60 --KEALAQAAAKKYALVRTPSPELGDRSKTKKRKRKDR 95
KE +A KY+ D +K+K +KRK
Sbjct: 502 AQKELELEAQGIKYSETSEADK---DVNKSKNKKRKVD 536
>gnl|CDD|181335 PRK08264, PRK08264, short chain dehydrogenase; Validated.
Length = 238
Score = 27.9 bits (63), Expect = 0.64
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 60 KEALAQAAAKKYALVRTPS--PELGDR 84
++ LA+ AAK YA R P +LG R
Sbjct: 24 EQLLARGAAKVYAAARDPESVTDLGPR 50
>gnl|CDD|215256 PLN02462, PLN02462, sedoheptulose-1,7-bisphosphatase.
Length = 304
Score = 27.4 bits (61), Expect = 1.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 15 GSYISVKETHQIAEAQLEKNARLRDAFGISEY 46
G + VKET +I E ++ LR F Y
Sbjct: 166 GKWQHVKETTEIGEGKIFSPGNLRATFDNPGY 197
>gnl|CDD|151249 pfam10799, YliH, Biofilm formation protein (YliH/bssR). YliH is
induced in biofilms and is involved in repression of
motility in the biofilms. YliH is also known as bssR
(regulator of biofilm through signal secreton).
Length = 127
Score = 26.8 bits (59), Expect = 1.5
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 11 LSRVGSYISVKETHQIAEAQLEKNARLRDAFGISEYFVEGSSLDPTRREKEALAQAA 67
L + Y+SV E+ + + E N +RD + ++ D RR +EALA AA
Sbjct: 27 LRKAKGYMSVSESDHLRDNFFELNREMRDHAPRLQLHLDQEEWDVLRRAEEALAAAA 83
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 25.4 bits (56), Expect = 5.2
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 54 DPTRREKEALAQAAAKKYALVRTPSPELGDRSKTKKRKRKDR 95
+++K+ + KKY + + R K KK +R++R
Sbjct: 253 SKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRER 294
>gnl|CDD|225263 COG2390, DeoR, Transcriptional regulator, contains sigma
factor-related N-terminal domain [Transcription].
Length = 321
Score = 24.8 bits (55), Expect = 8.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 31 LEKNARLRDAFGISEYFVEGSSLDPTRREKEALAQAAAK 69
LE +L++ FG+ E V S D L +AAA+
Sbjct: 68 LELEQQLKERFGLKEAIVVPSDSDADDSILRRLGRAAAQ 106
>gnl|CDD|218389 pfam05025, RbsD_FucU, RbsD / FucU transport protein family. The
Escherichia coli high-affinity ribose-transport system
consists of six proteins encoded by the rbs operon
(rbsD, rbsA, rbsC, rbsB, rbsK and rbsR). Of the six
components, RbsD is the only one whose function is
unknown although it is thought that it somehow plays a
critical role in PtsG-mediated ribose transport. This
family also includes FucU a protein from the fucose
biosynthesis operon that is presumably also involved in
fucose transport by similarity to RbsD.
Length = 138
Score = 24.4 bits (54), Expect = 9.4
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 22 ETHQIAEAQLEKNARLRDAFG--ISEYFVEGSSLDPTRREKEALAQAAAKKYALVRT 76
E +AE +N L A + G ++ E EA + A K A++RT
Sbjct: 65 EKAVLAEEIKMQNPELHPALQRELQALIAGGPDVEIEYVEHEAFYERAKKAKAVIRT 121
>gnl|CDD|233670 TIGR01986, glut_syn_euk, glutathione synthetase, eukaryotic. This
model represents the eukaryotic glutathione synthetase,
which shows little resemblance to the analogous enzyme
of Gram-negative bacteria (TIGR01380). In the
Kinetoplastida, trypanothione replaces glutathione, but
can be made from glutathione; a sequence from Leishmania
is not included in the seed, is highly divergent, and
therefore scores between the trusted and noise cutoffs.
Length = 472
Score = 24.8 bits (54), Expect = 9.8
Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
Query: 30 QLEKNARLRDAFGISEYFVEGSSLDPTRREKEALAQAAAKKYALVRTPSPELG 82
EK A LR F LD T+ +E + A K V P E G
Sbjct: 325 DAEKKASLRKTF------AGLYPLDDTKLGREGIKLALEKPSKFVLKPQREGG 371
>gnl|CDD|222308 pfam13672, PP2C_2, Protein phosphatase 2C. Protein phosphatase
2C is a Mn++ or Mg++ dependent protein serine/threonine
phosphatase.
Length = 211
Score = 24.6 bits (54), Expect = 9.8
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 6/67 (8%)
Query: 8 SSPLSRVGSYISVKETHQIAEAQLEKNARLRDAFGISEYF--VEGSSLDPTRREKEALAQ 65
S+ S VG+ ++V + A L + + + + L + A Q
Sbjct: 35 SAKRSDVGARLAV----EAAVEALRELLDSGELPEDEALLRAILNAILAILKAASAAAQQ 90
Query: 66 AAAKKYA 72
+ YA
Sbjct: 91 LEPRDYA 97
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.127 0.339
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,841,094
Number of extensions: 410101
Number of successful extensions: 340
Number of sequences better than 10.0: 1
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 19
Length of query: 95
Length of database: 10,937,602
Length adjustment: 62
Effective length of query: 33
Effective length of database: 8,187,654
Effective search space: 270192582
Effective search space used: 270192582
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.2 bits)