RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1929
         (95 letters)



>d2okga1 c.124.1.8 (A:89-338) Central glycolytic gene regulator
          CggR {Bacillus subtilis [TaxId: 1423]}
          Length = 250

 Score = 28.4 bits (63), Expect = 0.10
 Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 30 QLEKNARLRDAFGISEYFVEGSSLDPTRREKEALAQAAAK 69
           LEK   L++   + +  +     D +   K+ + +AA  
Sbjct: 8  LLEK--TLKERLNLKDAIIVSGDSDQSPWVKKEMGRAAVA 45


>d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella
          flexneri [TaxId: 623]}
          Length = 255

 Score = 28.1 bits (62), Expect = 0.16
 Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 30 QLEKNARLRDAFGISEYFVEGSSLDPTRREKEALAQAAAK 69
           LE+  +L+  FG+ +  V   + +    +   +    A+
Sbjct: 4  WLEQ--QLKQKFGLKDVVVVSGNDEDEETQLAMMGLHGAQ 41


>d2o0ma1 c.124.1.8 (A:95-341) Transcriptional regulator EF1965
          {Enterococcus faecalis [TaxId: 1351]}
          Length = 247

 Score = 27.7 bits (61), Expect = 0.19
 Identities = 8/40 (20%), Positives = 12/40 (30%), Gaps = 2/40 (5%)

Query: 30 QLEKNARLRDAFGISEYFVEGSSLDPTRREKEALAQAAAK 69
          Q+EK   +   FGI    V     D  ++           
Sbjct: 2  QIEK--EMTQYFGIQRCIVVAGDSDIQKKVLSDFGDVLTN 39


>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP)
          {Escherichia coli [TaxId: 562]}
          Length = 82

 Score = 25.8 bits (57), Expect = 0.36
 Identities = 6/35 (17%), Positives = 17/35 (48%), Gaps = 3/35 (8%)

Query: 14 VGSYISVKETHQIAEAQLEKNARLRDAFGISEYFV 48
          +   + + + H +A+ Q+E+   +   F  S+  +
Sbjct: 43 MEDSLPLVQAHMVAD-QVEQ--AILRRFPGSDVII 74


>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus
          thermophilus [TaxId: 274]}
          Length = 82

 Score = 25.1 bits (55), Expect = 0.73
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 3/35 (8%)

Query: 14 VGSYISVKETHQIAEAQLEKNARLRDAFGISEYFV 48
          V     V+E H++ + +LE+   L  AF   +  +
Sbjct: 45 VRGDTPVEEAHRLCD-ELER--ALAQAFPGLQATI 76


>d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 269

 Score = 25.2 bits (54), Expect = 1.3
 Identities = 7/40 (17%), Positives = 12/40 (30%)

Query: 3   RFQRHSSPLSRVGSYISVKETHQIAEAQLEKNARLRDAFG 42
            F+    P+      I   +         E  + +R AF 
Sbjct: 199 LFEDEILPIKLPDGSICQSDEGPRPNVTAESLSSIRPAFI 238


>d1h70a_ d.126.1.3 (A:) Dimethylarginine dimethylaminohydrolase
          DDAH {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 255

 Score = 24.1 bits (51), Expect = 3.7
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 70 KYALVRTPSPELGD 83
          K+ + RTP+  L D
Sbjct: 4  KHIIARTPARSLVD 17


>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase
          {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 103

 Score = 23.2 bits (50), Expect = 5.5
 Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 4/45 (8%)

Query: 13 RVGSYISVKET----HQIAEAQLEKNARLRDAFGISEYFVEGSSL 53
          ++G  +   E     H      L+   ++  A  +S   V    L
Sbjct: 53 KIGDRVQKGEALATIHSNRPDVLDVKEKIEAAIRLSPQPVARPPL 97


>d1geha1 c.1.14.1 (A:137-443) Ribulose 1,5-bisphosphate
           carboxylase-oxygenase {Archaeon Thermococcus
           kodakaraensis [TaxId: 311400]}
          Length = 307

 Score = 23.6 bits (51), Expect = 5.8
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 3/33 (9%)

Query: 37  LRDAFGISEYFVEGSSLDPTRREKEALAQAAAK 69
           +R A    +  ++G  LD   +  + LA+A  K
Sbjct: 272 VRQAI---DAIMQGIPLDEYAKTHKELARALEK 301


>g1jmu.1 e.35.1.1 (A:,B:) Membrane penetration protein mu1 {Reovirus
           [TaxId: 10891]}
          Length = 666

 Score = 23.3 bits (50), Expect = 6.8
 Identities = 7/27 (25%), Positives = 11/27 (40%)

Query: 57  RREKEALAQAAAKKYALVRTPSPELGD 83
           RR  +  A A AK+   ++      G 
Sbjct: 221 RRYPKEAAVALAKRNGGIQWMDVSEGT 247


>d1v8ca1 d.15.3.1 (A:1-87) MoaD-related protein, N-terminal domain
          {Thermus thermophilus [TaxId: 274]}
          Length = 87

 Score = 22.2 bits (47), Expect = 9.6
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 35 ARLRDAFGISEYFVEGSSLD 54
          A  RD  G S+  + G+++ 
Sbjct: 7  ATFRDLTGKSQLELPGATVG 26


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.127    0.339 

Gapped
Lambda     K      H
   0.267   0.0588    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 321,550
Number of extensions: 12713
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 13
Length of query: 95
Length of database: 2,407,596
Length adjustment: 58
Effective length of query: 37
Effective length of database: 1,611,256
Effective search space: 59616472
Effective search space used: 59616472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.2 bits)