Query psy1930
Match_columns 195
No_of_seqs 173 out of 1498
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 19:56:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00840 b_cpa1 sodium/hydrog 100.0 5.1E-29 1.1E-33 230.6 17.3 168 28-195 171-338 (559)
2 KOG1965|consensus 100.0 1.9E-28 4.2E-33 223.0 15.7 165 28-195 202-370 (575)
3 KOG1966|consensus 99.9 1.2E-28 2.7E-33 224.2 5.1 168 28-195 203-370 (670)
4 COG0025 NhaP NhaP-type Na+/H+ 99.9 2.2E-23 4.9E-28 187.9 15.2 164 28-195 158-327 (429)
5 TIGR00831 a_cpa1 Na+/H+ antipo 99.9 1.5E-22 3.3E-27 186.6 16.3 139 28-170 146-285 (525)
6 COG3263 NhaP-type Na+/H+ and K 99.9 2.4E-22 5.1E-27 178.2 14.3 158 29-195 159-317 (574)
7 TIGR00844 c_cpa1 na(+)/h(+) an 99.8 1.9E-19 4.1E-24 170.6 15.6 163 28-195 173-345 (810)
8 PRK05326 potassium/proton anti 99.8 7.4E-19 1.6E-23 163.2 15.9 158 29-195 160-319 (562)
9 PF00999 Na_H_Exchanger: Sodiu 99.3 2.4E-13 5.1E-18 119.7 -0.0 158 28-195 150-310 (380)
10 TIGR00932 2a37 transporter, mo 98.9 1.8E-08 3.9E-13 85.4 12.9 128 29-168 143-272 (273)
11 KOG4505|consensus 98.9 9.7E-09 2.1E-13 89.5 11.2 160 29-194 175-344 (467)
12 PRK03562 glutathione-regulated 98.4 9.4E-06 2E-10 76.8 14.7 106 81-193 203-310 (621)
13 PRK10669 putative cation:proto 98.2 4.4E-05 9.5E-10 71.2 14.5 114 74-194 203-319 (558)
14 PLN03159 cation/H(+) antiporte 98.1 6.4E-05 1.4E-09 73.5 14.8 130 29-170 209-341 (832)
15 PRK03659 glutathione-regulated 98.1 9.4E-05 2E-09 69.8 14.7 106 81-193 200-307 (601)
16 COG0475 KefB Kef-type K+ trans 98.0 0.0002 4.3E-09 64.5 14.5 132 29-172 159-294 (397)
17 COG4651 RosB Kef-type K+ trans 96.3 0.077 1.7E-06 46.5 11.4 94 72-172 200-297 (408)
18 PF06375 BLVR: Bovine leukaemi 94.9 0.0071 1.5E-07 47.7 0.0 17 10-26 84-100 (154)
19 KOG3794|consensus 85.6 0.53 1.2E-05 42.3 2.1 6 27-32 255-260 (453)
20 KOG2422|consensus 85.2 0.16 3.4E-06 47.8 -1.4 6 115-120 283-288 (665)
21 PF15086 UPF0542: Uncharacteri 85.0 1.2 2.7E-05 30.6 3.2 7 8-14 52-58 (74)
22 PF04956 TrbC: TrbC/VIRB2 fami 81.2 16 0.00034 25.9 8.0 36 55-90 39-75 (99)
23 TIGR00844 c_cpa1 na(+)/h(+) an 80.1 13 0.00028 36.8 9.2 42 98-139 20-61 (810)
24 COG5336 Uncharacterized protei 79.6 9.7 0.00021 28.4 6.4 24 62-85 46-69 (116)
25 PF04632 FUSC: Fusaric acid re 78.1 21 0.00046 33.6 10.0 96 68-170 52-151 (650)
26 PF08496 Peptidase_S49_N: Pept 77.0 2.4 5.3E-05 33.4 2.8 9 68-76 140-148 (155)
27 COG1230 CzcD Co/Zn/Cd efflux s 75.4 55 0.0012 28.6 11.8 97 73-169 61-180 (296)
28 TIGR00773 NhaA Na+/H+ antiport 75.4 47 0.001 30.0 10.8 93 73-170 177-271 (373)
29 PF09446 VMA21: VMA21-like dom 75.3 7.3 0.00016 26.2 4.4 38 95-132 10-61 (66)
30 PRK10669 putative cation:proto 74.1 33 0.00071 32.1 10.0 67 98-170 12-78 (558)
31 PLN03159 cation/H(+) antiporte 72.1 26 0.00057 34.8 9.2 76 95-170 46-125 (832)
32 TIGR01992 PTS-IIBC-Tre PTS sys 72.0 35 0.00076 31.5 9.5 34 97-130 162-195 (462)
33 PRK14853 nhaA pH-dependent sod 71.5 66 0.0014 29.5 10.9 71 100-170 211-288 (423)
34 PF06738 DUF1212: Protein of u 71.4 17 0.00037 28.9 6.5 58 71-128 131-188 (193)
35 KOG0526|consensus 70.8 1 2.2E-05 42.1 -0.9 21 12-32 513-533 (615)
36 PRK03562 glutathione-regulated 70.6 46 0.00099 31.8 10.2 71 94-170 7-77 (621)
37 PRK09796 PTS system cellobiose 70.5 22 0.00047 33.0 7.8 35 96-130 155-189 (472)
38 PF13945 NST1: Salt tolerance 68.4 0.8 1.7E-05 37.4 -1.8 14 140-153 102-115 (190)
39 PRK03659 glutathione-regulated 68.3 56 0.0012 31.1 10.3 70 95-170 8-77 (601)
40 PRK09586 murP PTS system N-ace 68.2 29 0.00062 32.3 8.1 34 96-129 169-202 (476)
41 PF13945 NST1: Salt tolerance 66.1 0.62 1.3E-05 38.0 -2.9 13 145-157 162-174 (190)
42 PF05178 Kri1: KRI1-like famil 65.0 8.7 0.00019 28.1 3.3 26 4-29 1-26 (101)
43 PF06963 FPN1: Ferroportin1 (F 65.0 1E+02 0.0023 28.2 11.0 106 70-177 301-423 (432)
44 COG3493 CitS Na+/citrate sympo 64.9 1.1E+02 0.0024 28.0 10.6 101 22-132 11-125 (438)
45 PF04086 SRP-alpha_N: Signal r 64.7 2.1 4.6E-05 36.3 0.0 19 14-32 208-226 (279)
46 TIGR00145 FTR1 family protein. 62.6 71 0.0015 27.6 9.0 40 69-108 154-193 (283)
47 PF06295 DUF1043: Protein of u 61.9 5.7 0.00012 30.2 1.9 21 69-89 3-23 (128)
48 PF14617 CMS1: U3-containing 9 61.9 1.2 2.5E-05 38.0 -2.1 10 103-112 132-141 (252)
49 PF01970 TctA: Tripartite tric 61.9 63 0.0014 29.5 8.9 74 61-134 336-412 (419)
50 PF08188 Protamine_3: Spermato 61.6 13 0.00028 22.6 3.0 27 5-31 3-29 (48)
51 COG2056 Predicted permease [Ge 61.1 1.3E+02 0.0029 27.4 11.1 35 56-90 245-282 (444)
52 PF05106 Phage_holin_3: Phage 58.8 34 0.00075 24.8 5.5 39 93-132 46-84 (100)
53 TIGR01594 holin_lambda phage h 58.8 64 0.0014 23.8 7.0 59 73-132 24-86 (107)
54 COG4603 ABC-type uncharacteriz 57.5 35 0.00077 30.5 6.4 49 62-113 113-161 (356)
55 COG0475 KefB Kef-type K+ trans 56.5 84 0.0018 28.3 8.7 72 95-171 9-80 (397)
56 COG3105 Uncharacterized protei 55.5 8.5 0.00018 29.5 1.8 22 68-89 11-32 (138)
57 TIGR00893 2A0114 d-galactonate 54.9 1.2E+02 0.0027 25.1 11.7 33 137-169 340-372 (399)
58 PRK11007 PTS system trehalose( 54.4 1.1E+02 0.0023 28.5 9.2 34 97-130 166-199 (473)
59 TIGR02230 ATPase_gene1 F0F1-AT 54.1 80 0.0017 23.1 6.7 45 61-108 45-90 (100)
60 KOG3962|consensus 53.9 3.4 7.3E-05 34.6 -0.6 6 103-108 100-105 (246)
61 TIGR03510 XapX XapX domain. Th 53.6 43 0.00092 21.3 4.5 43 70-112 4-46 (49)
62 PF12821 DUF3815: Protein of u 53.1 67 0.0015 24.0 6.5 39 94-132 24-62 (130)
63 KOG1650|consensus 52.8 78 0.0017 31.3 8.4 99 29-132 194-296 (769)
64 PF15179 Myc_target_1: Myc tar 52.5 20 0.00044 29.1 3.6 31 57-87 18-48 (197)
65 COG4061 MtrC Tetrahydromethano 52.2 1.4E+02 0.0031 25.0 9.3 37 94-130 136-183 (262)
66 PF12597 DUF3767: Protein of u 51.3 24 0.00053 26.5 3.7 46 67-112 43-88 (118)
67 PRK10712 PTS system fructose-s 51.3 60 0.0013 30.9 7.2 21 68-88 316-336 (563)
68 PF11368 DUF3169: Protein of u 51.2 1.4E+02 0.0031 24.8 13.2 25 62-86 9-33 (248)
69 PF12732 YtxH: YtxH-like prote 50.6 13 0.00027 25.3 1.9 18 69-86 2-19 (74)
70 PF12732 YtxH: YtxH-like prote 50.6 8.7 0.00019 26.1 1.1 20 64-83 1-20 (74)
71 TIGR01148 mtrC N5-methyltetrah 49.3 1.5E+02 0.0033 25.4 8.5 38 94-131 136-186 (265)
72 PRK10457 hypothetical protein; 49.1 90 0.002 21.9 6.6 21 69-89 4-24 (82)
73 PRK11677 hypothetical protein; 48.6 12 0.00025 28.9 1.6 19 69-87 7-25 (134)
74 PF15179 Myc_target_1: Myc tar 48.5 19 0.00042 29.3 2.9 32 61-92 18-49 (197)
75 PF04689 S1FA: DNA binding pro 48.5 6 0.00013 26.6 0.0 19 16-34 47-65 (69)
76 PRK05326 potassium/proton anti 47.7 1.5E+02 0.0032 27.8 9.2 71 96-170 10-80 (562)
77 TIGR02005 PTS-IIBC-alpha PTS s 47.4 57 0.0012 30.7 6.3 22 109-130 202-223 (524)
78 KOG3925|consensus 47.2 15 0.00033 32.8 2.4 11 101-111 135-145 (371)
79 COG0672 FTR1 High-affinity Fe2 47.1 2.2E+02 0.0047 25.7 13.8 23 68-90 177-199 (383)
80 PF04632 FUSC: Fusaric acid re 45.8 2.6E+02 0.0057 26.3 13.1 46 66-111 390-436 (650)
81 PF06912 DUF1275: Protein of u 45.3 1.3E+02 0.0029 24.0 7.6 17 30-46 14-31 (209)
82 PF12936 Kri1_C: KRI1-like fam 45.2 19 0.00042 26.0 2.3 14 16-29 76-89 (93)
83 PF12589 WBS_methylT: Methyltr 44.9 7.4 0.00016 27.7 0.1 18 12-29 42-59 (87)
84 KOG3045|consensus 44.9 15 0.00032 31.9 1.8 11 116-126 180-190 (325)
85 PRK01844 hypothetical protein; 44.9 32 0.00069 23.7 3.1 26 68-93 10-37 (72)
86 PRK10631 p-hydroxybenzoic acid 44.0 2.8E+02 0.006 27.0 10.5 18 69-86 69-86 (652)
87 PF03239 FTR1: Iron permease F 43.8 2.1E+02 0.0047 24.7 10.0 27 64-90 168-194 (306)
88 COG4980 GvpP Gas vesicle prote 43.6 18 0.00039 27.2 2.0 20 68-87 7-26 (115)
89 TIGR00145 FTR1 family protein. 43.5 59 0.0013 28.1 5.4 50 64-113 153-206 (283)
90 PRK10712 PTS system fructose-s 43.3 74 0.0016 30.3 6.4 72 62-133 236-330 (563)
91 COG1863 MnhE Multisubunit Na+/ 43.3 1.6E+02 0.0036 23.2 8.6 48 70-117 25-72 (158)
92 PRK11778 putative inner membra 43.2 18 0.0004 32.0 2.3 9 68-76 132-140 (330)
93 TIGR01995 PTS-II-ABC-beta PTS 43.1 1.7E+02 0.0037 28.1 8.9 31 99-129 151-181 (610)
94 PRK10255 PTS system N-acetyl g 42.6 67 0.0014 31.2 6.1 22 109-130 161-182 (648)
95 PRK09765 PTS system 2-O-a-mann 41.9 97 0.0021 29.8 7.1 24 68-91 381-404 (631)
96 PRK09765 PTS system 2-O-a-mann 41.7 64 0.0014 31.0 5.9 36 97-132 345-394 (631)
97 PRK12652 putative monovalent c 41.0 1.2E+02 0.0025 27.2 7.0 48 71-118 191-243 (357)
98 PRK12596 putative monovalent c 40.9 53 0.0012 26.1 4.5 47 70-117 27-74 (171)
99 KOG4520|consensus 40.9 12 0.00025 30.8 0.6 21 7-27 174-194 (238)
100 COG3641 PfoR Predicted membran 40.7 1.9E+02 0.0041 25.7 8.0 66 59-124 10-82 (348)
101 COG1178 ThiP ABC-type Fe3+ tra 40.6 2.6E+02 0.0055 26.4 9.6 67 55-121 52-124 (540)
102 COG4956 Integral membrane prot 40.6 49 0.0011 29.3 4.4 43 70-112 86-131 (356)
103 KOG2533|consensus 40.5 3.1E+02 0.0067 25.6 13.3 122 61-185 79-215 (495)
104 PF10031 DUF2273: Small integr 40.2 97 0.0021 19.7 5.1 40 72-114 10-49 (51)
105 PRK00523 hypothetical protein; 39.4 46 0.00099 22.9 3.3 26 68-93 11-38 (72)
106 PF11712 Vma12: Endoplasmic re 38.6 94 0.002 23.7 5.4 19 143-161 113-131 (142)
107 PF07741 BRF1: Brf1-like TBP-b 38.6 9.3 0.0002 27.6 -0.3 24 20-43 53-77 (97)
108 PF11151 DUF2929: Protein of u 38.5 81 0.0018 20.5 4.3 42 70-112 9-50 (57)
109 KOG2927|consensus 38.5 13 0.00028 33.3 0.5 8 25-32 298-305 (372)
110 PF03553 Na_H_antiporter: Na+/ 38.0 2.4E+02 0.0053 23.7 10.6 83 80-166 185-271 (303)
111 PF07214 DUF1418: Protein of u 37.9 6.6 0.00014 28.5 -1.1 13 20-32 82-94 (96)
112 TIGR00942 2a6301s05 Monovalent 37.7 65 0.0014 24.8 4.4 47 71-117 12-58 (144)
113 PF13515 FUSC_2: Fusaric acid 37.6 1.5E+02 0.0033 21.2 9.4 26 62-87 33-58 (128)
114 PF14158 YndJ: YndJ-like prote 37.6 2.7E+02 0.0058 24.0 10.2 22 111-132 132-153 (265)
115 KOG3113|consensus 37.6 24 0.00051 30.3 2.0 30 3-32 175-204 (293)
116 TIGR00932 2a37 transporter, mo 37.4 2.4E+02 0.0052 23.4 8.4 54 111-170 11-64 (273)
117 cd06580 TM_PBP1_transp_TpRbsC_ 37.2 2.3E+02 0.0051 23.2 8.3 47 65-114 51-97 (234)
118 PF14402 7TM_transglut: 7 tran 37.0 2.6E+02 0.0056 24.7 8.3 22 112-133 162-183 (313)
119 KOG2654|consensus 36.9 9.5 0.00021 34.7 -0.5 11 24-34 24-34 (461)
120 COG4129 Predicted membrane pro 36.2 3.1E+02 0.0067 24.3 9.0 24 64-87 56-79 (332)
121 COG1299 FruA Phosphotransferas 35.5 77 0.0017 28.3 4.9 25 66-90 95-119 (343)
122 PF03672 UPF0154: Uncharacteri 35.4 33 0.00071 23.1 2.0 24 69-92 4-29 (64)
123 TIGR00400 mgtE Mg2+ transporte 35.3 3.5E+02 0.0075 24.7 10.7 23 144-166 422-444 (449)
124 KOG2002|consensus 35.2 6.2 0.00014 39.4 -2.0 7 23-29 927-933 (1018)
125 KOG2236|consensus 35.2 21 0.00045 33.0 1.4 26 7-33 326-351 (483)
126 PF13003 MRL1: Ribosomal prote 35.0 10 0.00022 29.2 -0.5 7 23-29 39-45 (133)
127 PRK12651 putative monovalent c 35.0 1.8E+02 0.0039 22.6 6.6 47 71-117 26-72 (158)
128 TIGR00698 conserved hypothetic 34.7 3.3E+02 0.0071 24.1 8.9 36 97-132 7-47 (335)
129 COG0341 SecF Preprotein transl 34.6 83 0.0018 27.6 5.0 17 27-43 225-241 (305)
130 PRK10110 bifunctional PTS syst 34.5 1.1E+02 0.0025 28.8 6.2 20 111-130 213-232 (530)
131 PRK09917 hypothetical protein; 34.3 2.2E+02 0.0047 22.3 6.9 38 95-132 36-73 (157)
132 PLN02255 H(+) -translocating i 34.2 2.4E+02 0.0052 27.9 8.4 36 99-134 464-503 (765)
133 PF03030 H_PPase: Inorganic H+ 34.1 2.5E+02 0.0054 27.5 8.5 26 62-87 327-352 (682)
134 PRK08965 putative monovalent c 34.1 1.6E+02 0.0035 23.0 6.2 52 71-122 30-81 (162)
135 TIGR01427 PTS_IIC_fructo PTS s 33.7 1.7E+02 0.0037 26.0 6.9 22 69-90 110-131 (346)
136 cd03381 PAP2_glucose_6_phospha 33.3 85 0.0018 26.4 4.7 56 61-116 129-187 (235)
137 PF12072 DUF3552: Domain of un 33.0 37 0.0008 27.6 2.4 21 66-86 4-24 (201)
138 PF13003 MRL1: Ribosomal prote 32.6 15 0.00032 28.3 0.0 15 18-32 29-43 (133)
139 TIGR01996 PTS-II-BC-sucr PTS s 32.5 2.2E+02 0.0048 26.2 7.7 95 8-129 87-194 (461)
140 PF15459 RRP14: 60S ribosome b 32.4 62 0.0013 21.6 3.0 6 23-28 55-60 (64)
141 PRK00733 hppA membrane-bound p 32.4 2.5E+02 0.0055 27.4 8.1 37 98-134 364-408 (666)
142 PF07907 YibE_F: YibE/F-like p 32.0 3.1E+02 0.0067 23.1 10.0 25 145-169 171-195 (244)
143 PF03741 TerC: Integral membra 31.6 2.2E+02 0.0049 22.7 6.7 45 62-107 132-177 (183)
144 PF09858 DUF2085: Predicted me 30.5 2E+02 0.0044 20.5 6.1 45 71-115 25-69 (93)
145 TIGR02004 PTS-IIBC-malX PTS sy 30.4 1.3E+02 0.0028 28.3 5.8 60 71-130 138-223 (517)
146 PF09692 Arb1: Argonaute siRNA 30.1 5.5 0.00012 36.1 -3.1 38 74-111 125-163 (396)
147 PLN02220 delta-9 acyl-lipid de 29.9 1E+02 0.0022 26.9 4.7 27 11-37 11-38 (299)
148 PF04211 MtrC: Tetrahydrometha 29.8 3.6E+02 0.0078 23.1 8.5 16 115-130 169-184 (262)
149 PF03219 TLC: TLC ATP/ADP tran 29.3 4.7E+02 0.01 24.4 11.6 20 146-165 439-458 (491)
150 PRK11778 putative inner membra 29.2 46 0.001 29.5 2.5 7 105-111 167-173 (330)
151 PRK15406 oligopeptide ABC tran 29.1 2.5E+02 0.0054 24.2 7.1 18 68-85 112-129 (302)
152 COG3763 Uncharacterized protei 29.1 89 0.0019 21.4 3.3 27 67-93 9-37 (71)
153 COG3671 Predicted membrane pro 29.1 2.6E+02 0.0056 21.2 9.2 27 142-168 64-90 (125)
154 TIGR01104 V_PPase vacuolar-typ 28.9 2.1E+02 0.0046 28.0 7.0 37 98-134 400-440 (697)
155 PF09835 DUF2062: Uncharacteri 28.8 2.6E+02 0.0057 21.2 8.4 19 151-169 109-127 (154)
156 PF15086 UPF0542: Uncharacteri 28.7 88 0.0019 21.6 3.2 18 3-20 44-61 (74)
157 COG3202 ATP/ADP translocase [E 28.7 5.1E+02 0.011 24.5 10.5 32 137-168 425-464 (509)
158 KOG3817|consensus 28.7 3.1E+02 0.0067 25.0 7.5 14 156-169 262-275 (452)
159 KOG2223|consensus 28.6 74 0.0016 29.6 3.7 30 93-122 378-408 (586)
160 PF06305 DUF1049: Protein of u 27.9 1.1E+02 0.0023 19.8 3.6 17 68-84 24-40 (68)
161 PF04557 tRNA_synt_1c_R2: Glut 27.5 16 0.00036 25.7 -0.5 8 9-16 20-27 (84)
162 PRK09478 mglC beta-methylgalac 27.0 1.8E+02 0.0039 25.4 5.9 44 67-113 108-151 (336)
163 PRK10929 putative mechanosensi 26.3 7.1E+02 0.015 26.0 10.5 17 93-109 869-885 (1109)
164 PF11744 ALMT: Aluminium activ 26.1 5.1E+02 0.011 23.6 10.2 94 71-170 69-171 (406)
165 COG0738 FucP Fucose permease [ 26.1 2.3E+02 0.0051 26.0 6.5 55 74-131 283-340 (422)
166 PRK10404 hypothetical protein; 26.0 50 0.0011 24.1 1.8 13 70-82 86-98 (101)
167 PF06374 NDUF_C2: NADH-ubiquin 26.0 2.2E+02 0.0047 21.5 5.3 36 78-113 34-75 (117)
168 COG1289 Predicted membrane pro 26.0 6E+02 0.013 24.4 9.7 72 90-164 80-151 (674)
169 PF06570 DUF1129: Protein of u 26.0 3.2E+02 0.0068 22.0 6.8 23 65-87 114-136 (206)
170 PF08079 Ribosomal_L30_N: Ribo 25.9 1.3E+02 0.0028 20.3 3.8 9 3-11 3-11 (71)
171 PRK10913 dipeptide transporter 25.6 3.1E+02 0.0066 23.6 7.0 18 68-85 109-126 (300)
172 TIGR00890 2A0111 Oxalate/Forma 25.3 3.9E+02 0.0084 22.0 13.5 26 143-168 330-355 (377)
173 PRK08382 putative monovalent c 25.3 3.8E+02 0.0083 22.0 7.5 20 71-90 57-76 (201)
174 COG3275 LytS Putative regulato 25.3 2.4E+02 0.0053 26.6 6.5 66 24-89 34-100 (557)
175 PF04835 Pox_A9: A9 protein co 25.0 66 0.0014 20.8 2.0 25 145-169 19-44 (54)
176 PRK11285 araH L-arabinose tran 24.9 2.2E+02 0.0047 25.0 6.0 41 68-111 111-151 (333)
177 COG3264 Small-conductance mech 24.8 7.3E+02 0.016 25.0 10.2 52 79-130 580-637 (835)
178 COG4171 SapC ABC-type antimicr 24.8 4E+02 0.0086 22.8 7.1 12 159-170 234-245 (296)
179 COG3610 Uncharacterized conser 24.6 3.5E+02 0.0076 21.3 6.6 38 94-131 31-69 (156)
180 PF03601 Cons_hypoth698: Conse 24.6 4.7E+02 0.01 22.7 8.8 35 97-131 3-41 (305)
181 PF01306 LacY_symp: LacY proto 24.0 5.6E+02 0.012 23.4 8.9 31 100-130 85-115 (412)
182 PRK13707 conjugal transfer pil 24.0 2.7E+02 0.0058 20.2 5.4 29 64-92 36-65 (101)
183 PRK08383 putative monovalent c 23.7 3.4E+02 0.0074 21.5 6.4 21 70-90 29-49 (168)
184 PF11947 DUF3464: Protein of u 23.5 1.2E+02 0.0026 23.9 3.7 44 66-111 67-110 (153)
185 PHA00727 hypothetical protein 23.3 77 0.0017 26.3 2.6 26 5-30 60-90 (278)
186 PF11990 DUF3487: Protein of u 23.2 1.7E+02 0.0036 22.0 4.3 55 62-134 24-78 (121)
187 PRK10132 hypothetical protein; 23.0 66 0.0014 23.8 2.0 13 70-82 92-104 (108)
188 PRK10478 putative PTS system f 23.0 2.3E+02 0.0051 25.4 5.8 68 63-131 22-115 (359)
189 PRK11427 multidrug efflux syst 22.9 5.6E+02 0.012 25.1 8.7 22 69-90 402-424 (683)
190 PF01384 PHO4: Phosphate trans 22.8 3.8E+02 0.0083 23.4 7.1 30 60-89 118-147 (326)
191 PF04930 FUN14: FUN14 family; 22.8 1.8E+02 0.0038 20.8 4.2 17 74-90 4-20 (100)
192 TIGR01998 PTS-II-BC-nag PTS sy 22.7 2E+02 0.0043 26.7 5.5 18 113-130 182-199 (476)
193 PF13940 Ldr_toxin: Toxin Ldr, 22.7 1.7E+02 0.0038 17.1 4.0 19 69-87 15-33 (35)
194 PRK10907 intramembrane serine 22.7 4.9E+02 0.011 22.3 8.3 22 110-131 249-270 (276)
195 KOG1767|consensus 22.6 24 0.00051 26.1 -0.4 18 16-33 24-41 (110)
196 PF00999 Na_H_Exchanger: Sodiu 22.4 19 0.00042 31.4 -1.1 65 102-171 6-70 (380)
197 PLN00158 histone H2B; Provisio 22.2 97 0.0021 23.3 2.7 17 30-46 26-42 (116)
198 COG3859 Predicted membrane pro 22.2 4.3E+02 0.0093 21.4 10.3 55 60-115 45-99 (185)
199 PRK01663 C4-dicarboxylate tran 22.1 6.1E+02 0.013 23.1 8.6 22 62-83 7-28 (428)
200 COG1963 Uncharacterized protei 22.0 86 0.0019 24.6 2.5 26 61-86 126-151 (153)
201 PRK04288 antiholin-like protei 22.0 4.8E+02 0.01 21.9 7.7 67 60-128 88-162 (232)
202 PF10389 CoatB: Bacteriophage 22.0 95 0.002 19.5 2.3 23 66-88 22-44 (46)
203 COG4208 CysW ABC-type sulfate 21.8 4.9E+02 0.011 22.4 7.2 36 55-90 61-96 (287)
204 PF01956 DUF106: Integral memb 21.8 2.2E+02 0.0048 22.0 5.0 20 103-123 144-163 (168)
205 PRK10711 hypothetical protein; 21.7 4.6E+02 0.0099 22.1 7.0 60 60-121 83-147 (231)
206 PF13807 GNVR: G-rich domain o 21.7 99 0.0021 21.1 2.6 19 68-86 62-80 (82)
207 PF11120 DUF2636: Protein of u 21.3 1.2E+02 0.0026 20.2 2.8 30 61-90 3-32 (62)
208 PF11933 DUF3451: Domain of un 21.3 51 0.0011 27.6 1.3 17 4-20 9-25 (225)
209 PF06181 DUF989: Protein of un 21.3 5.6E+02 0.012 22.4 11.9 41 75-115 129-172 (300)
210 PF14143 YrhC: YrhC-like prote 21.2 2.8E+02 0.0062 19.0 6.6 27 145-171 7-33 (72)
211 TIGR03409 urea_trans_UrtB urea 21.2 2.8E+02 0.006 23.5 5.8 46 67-112 66-112 (291)
212 PRK10297 PTS system N,N'-diace 21.2 6.6E+02 0.014 23.2 9.4 20 112-131 142-161 (452)
213 TIGR00783 ccs citrate carrier 21.2 6E+02 0.013 22.7 10.6 68 99-168 183-254 (347)
214 COG1173 DppC ABC-type dipeptid 21.1 3.1E+02 0.0068 23.6 6.1 15 71-85 99-113 (289)
215 cd06574 TM_PBP1_branched-chain 21.0 2.5E+02 0.0054 23.4 5.5 40 66-108 48-87 (266)
216 TIGR01310 L7 60S ribosomal pro 20.9 1.2E+02 0.0027 25.5 3.5 17 93-109 112-128 (235)
217 PF14632 SPT6_acidic: Acidic N 20.8 47 0.001 23.9 0.8 6 26-31 52-57 (92)
218 cd06582 TM_PBP1_LivH_like Tran 20.7 3.1E+02 0.0067 22.9 6.0 46 66-111 53-99 (272)
219 COG1284 Uncharacterized conser 20.7 5.6E+02 0.012 22.2 7.6 70 63-133 113-199 (289)
220 TIGR01185 devC DevC protein. T 20.5 3.1E+02 0.0068 24.3 6.2 28 59-86 303-334 (380)
221 PF05957 DUF883: Bacterial pro 20.4 84 0.0018 22.1 2.1 11 71-81 80-90 (94)
222 PRK11618 inner membrane ABC tr 20.4 2.6E+02 0.0055 24.1 5.5 39 67-108 90-128 (317)
223 PF14256 YwiC: YwiC-like prote 20.3 62 0.0013 24.5 1.5 23 21-43 102-124 (129)
224 TIGR03408 urea_trans_UrtC urea 20.1 2.8E+02 0.006 23.8 5.7 45 66-110 90-134 (313)
No 1
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.96 E-value=5.1e-29 Score=230.62 Aligned_cols=168 Identities=54% Similarity=0.968 Sum_probs=148.4
Q ss_pred hhccchhhHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHH
Q psy1930 28 KKKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLA 107 (195)
Q Consensus 28 ~~ND~~AIVLF~~~~~~~~~g~~~~~~~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~ 107 (195)
-.|||+|+++|.++.++...++++.+..+..+....|+...+||+++|+++|++.++++++.++++..++.++++++|++
T Consensus 171 llNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~~~~e~~l~l~~~yl~ 250 (559)
T TIGR00840 171 LLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHIRQIEPLFVFLISYLS 250 (559)
T ss_pred hhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 36999999999999998753323344445666677888888889999999999999999999766789999999999999
Q ss_pred HHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q psy1930 108 YLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDAHVWNTAFVILTIFFC 187 (195)
Q Consensus 108 y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~~~~~~~~~~i~~~i~~~ 187 (195)
|.+||.+|.||++|+++||+++++|.+.|++++++....+||+.+++++|+++|+++|+++......|+|.++++++++|
T Consensus 251 Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~~~~~~i~~~l~~~ 330 (559)
T TIGR00840 251 YLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEWNWAFVVATLSFC 330 (559)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 99999999999999999999999998888999999999999999999999999999999886655678888888889999
Q ss_pred HHHhccCC
Q psy1930 188 SLYRTLGK 195 (195)
Q Consensus 188 lv~R~l~v 195 (195)
+++|+++|
T Consensus 331 ll~R~l~V 338 (559)
T TIGR00840 331 VIYRVLGV 338 (559)
T ss_pred HHHHHHHH
Confidence 99999875
No 2
>KOG1965|consensus
Probab=99.96 E-value=1.9e-28 Score=223.01 Aligned_cols=165 Identities=28% Similarity=0.453 Sum_probs=148.5
Q ss_pred hhccchhhHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcc--ccccHHHHHHHHHHH
Q psy1930 28 KKKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTN--EVRVIEPIFIFVMAY 105 (195)
Q Consensus 28 ~~ND~~AIVLF~~~~~~~~~g~~~~~~~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk~~~--~~~~~~~~l~la~a~ 105 (195)
-.|||+|||+|+++..+...+. +..+..+++..|+..+.|+..+|+++|++.++++|+++ ++|..|..+++.++|
T Consensus 202 vLNDAvsIVlf~~i~~~~~~~~---~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l~~~~~lE~al~ll~sY 278 (575)
T KOG1965|consen 202 VLNDAVSIVLFNTIQKFQLGSL---NDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYLRRTPSLESALMLLMSY 278 (575)
T ss_pred hccchhHHHHHHHHHHHccCCc---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 3699999999999999886443 23445579999999999999999999999999999875 578999999999999
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhcccc-hhhH-HHHHHHH
Q psy1930 106 LAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDA-HVWN-TAFVILT 183 (195)
Q Consensus 106 ~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~~~-~~~~-~~~i~~~ 183 (195)
.+|++||.+|.||++||++||++|+||.++|+++++|...+++|+++++++|+++|.|+|+.+++.. ..|. ..++.++
T Consensus 279 ~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k~~~~~~~fv~~~ 358 (575)
T KOG1965|consen 279 LSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQKHVYKSLQFVFGA 358 (575)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccceeeechHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999887644 5666 4778889
Q ss_pred HHHHHHHhccCC
Q psy1930 184 IFFCSLYRTLGK 195 (195)
Q Consensus 184 i~~~lv~R~l~v 195 (195)
.++++++|++.|
T Consensus 359 ~vlV~lgRa~nv 370 (575)
T KOG1965|consen 359 GVLVLLGRAANV 370 (575)
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 3
>KOG1966|consensus
Probab=99.95 E-value=1.2e-28 Score=224.22 Aligned_cols=168 Identities=57% Similarity=1.030 Sum_probs=159.6
Q ss_pred hhccchhhHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHH
Q psy1930 28 KKKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLA 107 (195)
Q Consensus 28 ~~ND~~AIVLF~~~~~~~~~g~~~~~~~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~ 107 (195)
-.|||+++|||++|.++.+.|++++.+.+...+..+|+.+.+||+++|+++|+++++..|+..+-+.+|+++.+.+||++
T Consensus 203 LlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~vrviePvfif~~pYla 282 (670)
T KOG1966|consen 203 LLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKHVRVLEPVFIFLLPYLA 282 (670)
T ss_pred hhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcceeeecchhhhhHHHHH
Confidence 47999999999999999988877777767777889999999999999999999999999999988899999999999999
Q ss_pred HHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q psy1930 108 YLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDAHVWNTAFVILTIFFC 187 (195)
Q Consensus 108 y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~~~~~~~~~~i~~~i~~~ 187 (195)
|..||.+|.|||+|+.+||+.|.+|.+.|+++++......|..+++..+|+++|+++|++..+..++|++.++.++++.|
T Consensus 283 YL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~~h~wd~~Fi~~T~~fc 362 (670)
T KOG1966|consen 283 YLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSSNHHWDFAFICLTLVFC 362 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCCcceeehhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998878899999999999999
Q ss_pred HHHhccCC
Q psy1930 188 SLYRTLGK 195 (195)
Q Consensus 188 lv~R~l~v 195 (195)
++.|+++|
T Consensus 363 ~~~R~lgv 370 (670)
T KOG1966|consen 363 LIYRAIGV 370 (670)
T ss_pred HHHHHHHh
Confidence 99999985
No 4
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.2e-23 Score=187.88 Aligned_cols=164 Identities=23% Similarity=0.318 Sum_probs=139.2
Q ss_pred hhccchhhHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhccc----cccHHHHHHHHH
Q psy1930 28 KKKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNE----VRVIEPIFIFVM 103 (195)
Q Consensus 28 ~~ND~~AIVLF~~~~~~~~~g~~~~~~~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk~~~~----~~~~~~~l~la~ 103 (195)
-.|||+++++|.+.+++...++ + .+......+|++.+++|+++|+++|++..+++++.++ ++..+..++++.
T Consensus 158 l~ND~~giv~f~~~l~~~~~~~-~---~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L~~ 233 (429)
T COG0025 158 LLNDGVGIVLFKVALAALLGTG-A---FSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLL 233 (429)
T ss_pred HhhhHHHHHHHHHHHHHHhccC-C---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHH
Confidence 5799999999999999886432 2 2345678999999999999999999999999999886 478999999999
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhhhcccccccCh-hHHHHHHHHHHHHHHHHhHHHHHHHhhhhcccch-hhHHHHHH
Q psy1930 104 AYLAYLTAEIFHMSGILAITFCGITMKNYVEANISH-KSHTTVKYAMKMLSSSSETIIFMFLGISTISDAH-VWNTAFVI 181 (195)
Q Consensus 104 a~~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~-~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~~~~-~~~~~~i~ 181 (195)
++.+|.+||.+|+||++|++++|++++++...+.++ +.+...++|||.+++++|+++|+++|+++..... .+.+..++
T Consensus 234 ~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~~~~~~l 313 (429)
T COG0025 234 AFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLGLL 313 (429)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHH
Confidence 999999999999999999999999998444444454 4478889999999999999999999999975443 33456666
Q ss_pred HHHHHHHHHhccCC
Q psy1930 182 LTIFFCSLYRTLGK 195 (195)
Q Consensus 182 ~~i~~~lv~R~l~v 195 (195)
++.+.++++||++|
T Consensus 314 ~~~~~~~v~R~~~V 327 (429)
T COG0025 314 VALVAVLLARPLWV 327 (429)
T ss_pred HHHHHHHHHHHHHH
Confidence 78889999999875
No 5
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.89 E-value=1.5e-22 Score=186.56 Aligned_cols=139 Identities=23% Similarity=0.343 Sum_probs=122.3
Q ss_pred hhccchhhHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHH
Q psy1930 28 KKKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLA 107 (195)
Q Consensus 28 ~~ND~~AIVLF~~~~~~~~~g~~~~~~~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~ 107 (195)
-.||++++++|.++..+..+++ + .++.+.+..|++.+++|+++|+++|++..+++++..+++..+..++++++|++
T Consensus 146 llND~~alvlf~~~~~~~~~~~-~---~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~~~~~~~l~l~~~~~~ 221 (525)
T TIGR00831 146 LLNDGAALVVFAIAVAVALGKG-V---FDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDDPLVEIALTILAPFAG 221 (525)
T ss_pred hhcchHHHHHHHHHHHHHhcCC-C---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3799999999999998875322 1 34555678899999999999999999999988665555778999999999999
Q ss_pred HHHHhhhhhhhHHHHHHHHHhhhccccc-ccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhcc
Q psy1930 108 YLTAEIFHMSGILAITFCGITMKNYVEA-NISHKSHTTVKYAMKMLSSSSETIIFMFLGISTIS 170 (195)
Q Consensus 108 y~lae~l~~SGiLAvvv~Gl~l~~~~~~-~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~ 170 (195)
|.+||.+|.||++|+++||++++|+.++ +.+++.+...++|||.+++++|+++|+++|+++..
T Consensus 222 y~lAe~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~ 285 (525)
T TIGR00831 222 FLLAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPG 285 (525)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998876 67888888999999999999999999999999854
No 6
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.4e-22 Score=178.19 Aligned_cols=158 Identities=16% Similarity=0.161 Sum_probs=137.4
Q ss_pred hccchhhHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHH
Q psy1930 29 KKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAY 108 (195)
Q Consensus 29 ~ND~~AIVLF~~~~~~~~~g~~~~~~~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~y 108 (195)
-||++|++|..++.++...|+.++ ++... ..|++|++.|+++|+..|++.+++.++.+-+..+.+++.++.+.++|
T Consensus 159 tNDPmAvfLTitlieli~~get~l---~~~~l-l~f~~q~glG~l~G~~gg~l~~~~Inr~nLd~GL~pil~la~~Ll~f 234 (574)
T COG3263 159 SNDPMAVFLTITLIELIAGGETNL---SWGFL-LGFLQQFGLGLLLGLGGGKLLLQLINRINLDSGLYPILALAGGLLIF 234 (574)
T ss_pred CCCceeeehhHHHHHHHhcccccc---CHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 499999999999999987775443 33333 44999999999999999999999999998667899999999999999
Q ss_pred HHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhcccc-hhhHHHHHHHHHHHH
Q psy1930 109 LTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDA-HVWNTAFVILTIFFC 187 (195)
Q Consensus 109 ~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~~~-~~~~~~~i~~~i~~~ 187 (195)
.+++.+|+||++||+.||+.++|. +-+.++.+.+|.|.++|++|+.+|+++|+.++|.+ .......+++++.++
T Consensus 235 s~t~aiGGsG~LaVYl~Gll~GN~-----~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~iavPailL~l~mi 309 (574)
T COG3263 235 SLTGAIGGSGILAVYLAGLLLGNR-----PIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPIAIPAILLSLWMI 309 (574)
T ss_pred HHHHHhcCcccHHHHHHHHHhCCC-----cchhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHhhHHHHHHHHHHH
Confidence 999999999999999999999984 44566788999999999999999999999998754 344555667789999
Q ss_pred HHHhccCC
Q psy1930 188 SLYRTLGK 195 (195)
Q Consensus 188 lv~R~l~v 195 (195)
+++||++|
T Consensus 310 fvaRP~aV 317 (574)
T COG3263 310 FVARPLAV 317 (574)
T ss_pred HHHhHHHH
Confidence 99999986
No 7
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.82 E-value=1.9e-19 Score=170.55 Aligned_cols=163 Identities=13% Similarity=0.055 Sum_probs=124.6
Q ss_pred hhccchhhHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcccc----ccHHHHHHHHH
Q psy1930 28 KKKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEV----RVIEPIFIFVM 103 (195)
Q Consensus 28 ~~ND~~AIVLF~~~~~~~~~g~~~~~~~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk~~~~~----~~~~~~l~la~ 103 (195)
-.|||+|+.++.+.+.+...++..-.+ .....+.++++++++|+++|+++|++..+++++.++. +.....+.+++
T Consensus 173 GlNDGlAfpfv~LaL~ll~~~~~g~~~-~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i~~esfla~~LaL 251 (810)
T TIGR00844 173 GCNDGLAFPFVFLSMDLLLYPGRGGEI-VKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNIIDRESFLAFYLIL 251 (810)
T ss_pred hcccHHHHHHHHHHHHHHhccCccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Confidence 369999999998887766422111001 1112468899999999999999999999999887632 12345678889
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhcccch------hhHH
Q psy1930 104 AYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDAH------VWNT 177 (195)
Q Consensus 104 a~~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~~~~------~~~~ 177 (195)
++++|.+++.+|+||+||||+||+++++... ..++ ....+||+.++.++|.++|+++|+.+.+... .+.|
T Consensus 252 Ali~~gla~lLggSGfLAVFVAGl~~gn~~~--~~~~--~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w 327 (810)
T TIGR00844 252 ALTCAGFGSMLGVDDLLVSFFAGTAFAWDGW--FAQK--THESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVW 327 (810)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHhcccc--hhhh--HHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHH
Confidence 9999999999999999999999999998643 1222 2346799999999999999999999864321 2457
Q ss_pred HHHHHHHHHHHHHhccCC
Q psy1930 178 AFVILTIFFCSLYRTLGK 195 (195)
Q Consensus 178 ~~i~~~i~~~lv~R~l~v 195 (195)
..++++++++++.||.+|
T Consensus 328 ~~ilLaL~LifVrRPpaV 345 (810)
T TIGR00844 328 RLIILSLVVIFLRRIPAV 345 (810)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777788999999998653
No 8
>PRK05326 potassium/proton antiporter; Reviewed
Probab=99.81 E-value=7.4e-19 Score=163.19 Aligned_cols=158 Identities=17% Similarity=0.186 Sum_probs=126.6
Q ss_pred hccchhhHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHHH
Q psy1930 29 KKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNE-VRVIEPIFIFVMAYLA 107 (195)
Q Consensus 29 ~ND~~AIVLF~~~~~~~~~g~~~~~~~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk~~~~-~~~~~~~l~la~a~~~ 107 (195)
.||++|+++|.++.++...++.+ ..+..+..++.++++|+++|+++|++..+++++.+. ++..+.++++++++++
T Consensus 160 ~nD~~ai~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~~~~~~~~i~~l~~~l~~ 235 (562)
T PRK05326 160 SNDPMAVFLTITLIELITGGETG----LSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIALPAEGLYPILVLAGALLI 235 (562)
T ss_pred cccHHHHHHHHHHHHHHhCCCCc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHH
Confidence 59999999999999877544322 112346788999999999999999999999998864 3457788999999999
Q ss_pred HHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhcccch-hhHHHHHHHHHHH
Q psy1930 108 YLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDAH-VWNTAFVILTIFF 186 (195)
Q Consensus 108 y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~~~~-~~~~~~i~~~i~~ 186 (195)
|.+||.+|.||++|++++|++++|... +.++...++|+.++++++.+.|+++|+.+++... ...+..+++++++
T Consensus 236 ~~~a~~lg~Sg~la~~iaGl~l~n~~~-----~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i~~~l 310 (562)
T PRK05326 236 FALTAALGGSGFLAVYLAGLVLGNRPI-----RHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPALLLALFL 310 (562)
T ss_pred HHHHHHHCCcHHHHHHHHHHHHhCCcc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998532 2234578999999999999999999999876432 2223334445677
Q ss_pred HHHHhccCC
Q psy1930 187 CSLYRTLGK 195 (195)
Q Consensus 187 ~lv~R~l~v 195 (195)
++++||++|
T Consensus 311 ~~vaR~l~v 319 (562)
T PRK05326 311 ILVARPLAV 319 (562)
T ss_pred HHHHHHHHH
Confidence 889999864
No 9
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=99.32 E-value=2.4e-13 Score=119.73 Aligned_cols=158 Identities=20% Similarity=0.252 Sum_probs=10.0
Q ss_pred hhccchhhHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHH
Q psy1930 28 KKKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLA 107 (195)
Q Consensus 28 ~~ND~~AIVLF~~~~~~~~~g~~~~~~~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~ 107 (195)
-.||..+++++..+.+..+.+. ..+.......+...+..|+++|...+++..++.++.++++..+...++++++.+
T Consensus 150 ~i~d~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 225 (380)
T PF00999_consen 150 VINDIIAIILLSILISLAQASG----QSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLALILLL 225 (380)
T ss_dssp TTTTTTTTTTT---------------------------------------------------------------------
T ss_pred hhhccchhhhhhhhhhhhcccc----cccccchhcchhhhhhhheeeecccchHHHHhhhhccccchhhHHHHHHHHhhh
Confidence 4699999999999998872211 134556778888888888999999998888888886444578899999999999
Q ss_pred HHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhcccch---hhHHHHHHHHH
Q psy1930 108 YLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDAH---VWNTAFVILTI 184 (195)
Q Consensus 108 y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~~~~---~~~~~~i~~~i 184 (195)
|.++|.+|.||+++++++|+.+++... .++.++..+++|+ .+++.+.|+++|+.++.... ...+...+..+
T Consensus 226 ~~~a~~~g~s~~l~af~~Gl~~~~~~~---~~~~~~~l~~~~~---~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~ 299 (380)
T PF00999_consen 226 YGLAEILGLSGILGAFIAGLILSNSPF---AERLEEKLESFWY---GFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLL 299 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccceeeeeehccccccc---cchhhhcccchhh---HHHhhHHhhhhcccccccccccchhhhhhHHHHH
Confidence 999999999999999999999995432 3445555777776 88999999999999975433 23344444456
Q ss_pred HHHHHHhccCC
Q psy1930 185 FFCSLYRTLGK 195 (195)
Q Consensus 185 ~~~lv~R~l~v 195 (195)
+.++++|++++
T Consensus 300 ~~~~~~k~~~~ 310 (380)
T PF00999_consen 300 IAILLGKFIGV 310 (380)
T ss_dssp -----------
T ss_pred HHHHHhhhcee
Confidence 67778888764
No 10
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=98.94 E-value=1.8e-08 Score=85.41 Aligned_cols=128 Identities=11% Similarity=0.110 Sum_probs=92.8
Q ss_pred hccchhhHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhccc--cccHHHHHHHHHHHH
Q psy1930 29 KKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNE--VRVIEPIFIFVMAYL 106 (195)
Q Consensus 29 ~ND~~AIVLF~~~~~~~~~g~~~~~~~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk~~~~--~~~~~~~l~la~a~~ 106 (195)
.||..+++++.++....+.++ . +.......+...++..+++|++.++...++.++.++ ++..+...++.+++.
T Consensus 143 ~~D~~~i~~l~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 217 (273)
T TIGR00932 143 FQDIAVVPLLALLPLLATSAS--T---EHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRPSELFTAGSLLLMFG 217 (273)
T ss_pred HHHHHHHHHHHHHHHHhcCCC--c---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 799999999999887764321 1 111223344455556667778888888888877643 234667888999999
Q ss_pred HHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhh
Q psy1930 107 AYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGIST 168 (195)
Q Consensus 107 ~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v 168 (195)
.+.++|.+|.|++++++++|+.+++... . +...+..+.+..+..-+-|+.+|+++
T Consensus 218 ~~~la~~~g~s~~lgaf~aGl~~~~~~~---~----~~l~~~l~~~~~~f~plFF~~~G~~~ 272 (273)
T TIGR00932 218 SAYFADLLGLSMALGAFLAGVVLSESEY---R----HKLESDLEPIGGVLLPLFFISVGMSV 272 (273)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHcCCch---H----HHHHHHHHhHHHHHHHHHHHHhCccC
Confidence 9999999999999999999999997421 1 22444455555778888899999875
No 11
>KOG4505|consensus
Probab=98.94 E-value=9.7e-09 Score=89.55 Aligned_cols=160 Identities=15% Similarity=0.119 Sum_probs=117.8
Q ss_pred hccchhhHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhccccc----cHHHHHHHHHH
Q psy1930 29 KKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVR----VIEPIFIFVMA 104 (195)
Q Consensus 29 ~ND~~AIVLF~~~~~~~~~g~~~~~~~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk~~~~~~----~~~~~l~la~a 104 (195)
-||++|+-++-..+.+...+.+ -...-. -.....+++...|+++|.++|++....+|+.+..+ ....+..++++
T Consensus 175 cNDGMaipflflai~Ll~h~~~-r~~~rd-wv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid~eSfl~~~vvl~ 252 (467)
T KOG4505|consen 175 CNDGMAIPFLFLAIDLLRHKPR-RKAGRD-WVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLIDRESFLIFYVVLA 252 (467)
T ss_pred CCCCcchhHHHHHHHHHhcCch-hccCCc-eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 5999999998888887654432 111111 14567888999999999999999999998765332 23456678888
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhcccchhhH------HH
Q psy1930 105 YLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDAHVWN------TA 178 (195)
Q Consensus 105 ~~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~~~~~~~------~~ 178 (195)
+.|-.+.+.+|++-.+-.+++|++++.-+. ++.++++ .+.-+.+..+++..-|++.|..++..+.+|+ |.
T Consensus 253 lfc~gigtiiGvddLl~sFfAGi~Fswd~w--Fsk~t~~--s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwr 328 (467)
T KOG4505|consen 253 LFCMGIGTIIGVDDLLVSFFAGIVFSWDEW--FSKKTKE--SRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWR 328 (467)
T ss_pred HHHhhhhheechhHHHHHHHhhhhcchhHH--hhhhhhh--ccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHH
Confidence 899999999999999999999999986442 4454433 4566777888999999999998865543333 55
Q ss_pred HHHHHHHHHHHHhccC
Q psy1930 179 FVILTIFFCSLYRTLG 194 (195)
Q Consensus 179 ~i~~~i~~~lv~R~l~ 194 (195)
.+++++...++=|+-.
T Consensus 329 lvilsi~iif~RRip~ 344 (467)
T KOG4505|consen 329 LVILSITIIFIRRIPA 344 (467)
T ss_pred HHHHHHHHHHhcccce
Confidence 6767777666666543
No 12
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=98.39 E-value=9.4e-06 Score=76.83 Aligned_cols=106 Identities=13% Similarity=0.107 Sum_probs=68.1
Q ss_pred HHHHHHhhcccc--ccHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhH
Q psy1930 81 LTGFVTRFTNEV--RVIEPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSET 158 (195)
Q Consensus 81 l~~~llk~~~~~--~~~~~~l~la~a~~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~ 158 (195)
+..+++++..+. +......++.+++++..++|.+|.|..+++|++|+++++.. ..++.++.+..|- .++-.
T Consensus 203 l~~~l~~~~~~~~~~e~~~~~~l~lv~~~a~la~~~Gls~~lGAFlAGl~l~~~~---~~~~le~~i~pf~----~lll~ 275 (621)
T PRK03562 203 VTRPALRFVARSGLREVFTAVALFLVFGFGLLMEEVGLSMALGAFLAGVLLASSE---YRHALESDIEPFK----GLLLG 275 (621)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcCCc---cHHHHHHHHHHHH----HHHHH
Confidence 444555555322 33456667778888889999999999999999999999732 2344444444543 45668
Q ss_pred HHHHHHhhhhcccchhhHHHHHHHHHHHHHHHhcc
Q psy1930 159 IIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTL 193 (195)
Q Consensus 159 ~iFvllG~~v~~~~~~~~~~~i~~~i~~~lv~R~l 193 (195)
+-|+.+|+.++......++..++..++..++.+++
T Consensus 276 lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~ 310 (621)
T PRK03562 276 LFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIA 310 (621)
T ss_pred HHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999986533222333333333345555554
No 13
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=98.20 E-value=4.4e-05 Score=71.24 Aligned_cols=114 Identities=14% Similarity=0.184 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhhcccccc--HHHHHHHHHHHH-HHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHH
Q psy1930 74 IGVIWGFLTGFVTRFTNEVRV--IEPIFIFVMAYL-AYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMK 150 (195)
Q Consensus 74 iG~~~G~l~~~llk~~~~~~~--~~~~l~la~a~~-~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~ 150 (195)
++++..++..+++++..+... ......++++++ ++..+|.+|.|.+++.+++|+++++.. ..++..+....+
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~~e~~~l~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~~~---~~~~~~~~~~~~-- 277 (558)
T PRK10669 203 MMLVGRRLVPWILARSAATGSRELFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNESE---LSHRAAHDTLPL-- 277 (558)
T ss_pred HHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhCCh---hHHHHHHHHhhH--
Confidence 344444555566665543222 223333444443 445679999999999999999998631 223222222222
Q ss_pred HHHHHHhHHHHHHHhhhhcccchhhHHHHHHHHHHHHHHHhccC
Q psy1930 151 MLSSSSETIIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTLG 194 (195)
Q Consensus 151 ~l~~l~~~~iFvllG~~v~~~~~~~~~~~i~~~i~~~lv~R~l~ 194 (195)
..++-.+-|+.+|++++.....-++..+...+++.+++|+++
T Consensus 278 --~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~ 319 (558)
T PRK10669 278 --RDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLA 319 (558)
T ss_pred --HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677899999999875432212333333444556666554
No 14
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=98.14 E-value=6.4e-05 Score=73.47 Aligned_cols=130 Identities=12% Similarity=0.051 Sum_probs=78.2
Q ss_pred hccchhhHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhccc-cc--cHHHHHHHHHHH
Q psy1930 29 KKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNE-VR--VIEPIFIFVMAY 105 (195)
Q Consensus 29 ~ND~~AIVLF~~~~~~~~~g~~~~~~~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk~~~~-~~--~~~~~l~la~a~ 105 (195)
.||-.+++++.++..+...+... ...+..++..++..+++.+++-.+..|+.++..+ .+ .....++++..+
T Consensus 209 v~Dl~~~ilLav~~~l~~~~~~~------~~~l~~~l~~~~f~~~~~~v~r~~~~~~~r~~~~~~~~~e~~v~~il~~vl 282 (832)
T PLN03159 209 VNDMCAWILLALAIALAENDSTS------LASLWVLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEFYICLILTGVM 282 (832)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcccchhHHHHHHHH
Confidence 57888888888776665433211 1111222222222233333444555666666542 22 244556677778
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhcc
Q psy1930 106 LAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTIS 170 (195)
Q Consensus 106 ~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~ 170 (195)
++.+++|.+|.|.+++.|++|+++.+ .+ ..++. .+.+-.....++--+-|+.+|+.++.
T Consensus 283 ~~a~lae~~Gl~~ilGAFlaGl~lp~-~~--~~~~l---~ekle~~~~~lflPlFFv~vGl~idl 341 (832)
T PLN03159 283 ISGFITDAIGTHSVFGAFVFGLVIPN-GP--LGVTL---IEKLEDFVSGLLLPLFFAISGLKTNV 341 (832)
T ss_pred HHHHHHHHhCccHHHHHHHHhhccCC-cc--hHHHH---HHHHHHHHHHHHHHHHHHHhhheeeH
Confidence 88889999999999999999999985 11 22222 23333333456778889999998864
No 15
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=98.10 E-value=9.4e-05 Score=69.83 Aligned_cols=106 Identities=11% Similarity=0.121 Sum_probs=67.3
Q ss_pred HHHHHHhhccccc--cHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhH
Q psy1930 81 LTGFVTRFTNEVR--VIEPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSET 158 (195)
Q Consensus 81 l~~~llk~~~~~~--~~~~~l~la~a~~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~ 158 (195)
+...++++..+.+ ......++.+++++-.++|.+|.|..+++|++|+++++.. ..++.+..++.|. .++-.
T Consensus 200 ~~~~~~~~~~~~~~~e~~~~~~l~~vl~~a~l~~~~Gls~~LGAFlaGl~l~~s~---~~~~l~~~i~pf~----~lll~ 272 (601)
T PRK03659 200 LLRPLFRFIAASGVREVFTAAALLLVLGSALFMDALGLSMALGTFIAGVLLAESE---YRHELEIAIEPFK----GLLLG 272 (601)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcCCc---hHHHHHHHHHHHH----HHHHH
Confidence 3445555543222 3444555666666677889999999999999999999732 3455445566664 45668
Q ss_pred HHHHHHhhhhcccchhhHHHHHHHHHHHHHHHhcc
Q psy1930 159 IIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTL 193 (195)
Q Consensus 159 ~iFvllG~~v~~~~~~~~~~~i~~~i~~~lv~R~l 193 (195)
+.|+.+|+.++.....-+|..++..+++.+++|++
T Consensus 273 lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~ 307 (601)
T PRK03659 273 LFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGL 307 (601)
T ss_pred HHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999986533222333333334445556554
No 16
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=98.02 E-value=0.0002 Score=64.46 Aligned_cols=132 Identities=14% Similarity=0.143 Sum_probs=84.9
Q ss_pred hccchhhHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchhHHHHH-H-HHHHHHHhhccc--cccHHHHHHHHHH
Q psy1930 29 KKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIW-G-FLTGFVTRFTNE--VRVIEPIFIFVMA 104 (195)
Q Consensus 29 ~ND~~AIVLF~~~~~~~~~g~~~~~~~s~~~~~~~f~~~~~gGiliG~~~-G-~l~~~llk~~~~--~~~~~~~l~la~a 104 (195)
.+|-.++.+......+...++.+. .. ...+...+ +...+.... | ++..+++|+..+ .+......++++.
T Consensus 159 ~~Di~~i~lLai~~~l~~~g~~~~--~~----~~~~~~~~-~~f~~~~l~~g~~l~~~~~r~~~~~~~~e~~~~~~l~i~ 231 (397)
T COG0475 159 FDDIAAILLLAIVPALAGGGSGSV--GF----ILGLLLAI-LAFLALLLLLGRYLLPPLFRRVAKTESSELFILFVLLLV 231 (397)
T ss_pred HHHHHHHHHHHHHHHHccCCCccH--hH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 467777777777777765443221 11 12222211 122222222 4 666667777653 3456777888888
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhcccc
Q psy1930 105 YLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDA 172 (195)
Q Consensus 105 ~~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~~~ 172 (195)
+.+=+++|.+|.|-++..+.+|+.++....+ .++.++.++.+-+ .+.--+-|+.+|+.++...
T Consensus 232 l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~--~~~l~~~i~~~~~---~~fiplFFi~vG~~~dl~~ 294 (397)
T COG0475 232 LGAAYLAELLGLSMILGAFLAGLLLSESEYR--KHELEEKIEPFGD---GLFIPLFFISVGMSLDLGV 294 (397)
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHhcccccc--hHHHHHHHHhHHh---HHHHHHHHHHhhHHcCHHH
Confidence 8899999999999999999999999975432 1344444555442 1678889999999997643
No 17
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.29 E-value=0.077 Score=46.51 Aligned_cols=94 Identities=16% Similarity=0.209 Sum_probs=59.2
Q ss_pred hhHHHHHHHHH-HHHHhhcccccc--HHHHHHHHHHH-HHHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHH
Q psy1930 72 TVIGVIWGFLT-GFVTRFTNEVRV--IEPIFIFVMAY-LAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKY 147 (195)
Q Consensus 72 iliG~~~G~l~-~~llk~~~~~~~--~~~~l~la~a~-~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~ 147 (195)
+.+++++|.-. -|.+.+.....+ +-....++++. ++|..+|.+|+|=-+..+++|++++..+ .|++..+....
T Consensus 200 ~alml~VgrrviPw~le~~a~tGsrElf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~ese---lshraa~~slp 276 (408)
T COG4651 200 IAIMLVVGRRLIPWILERVAATGSRELFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLAESE---LSHRAAEDSLP 276 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHhhccceeeccchhHHHHHHHHHhcchh---hhHHHHHhccC
Confidence 55666777444 455555543222 22333444444 3566778999999999999999998653 45554444333
Q ss_pred HHHHHHHHHhHHHHHHHhhhhcccc
Q psy1930 148 AMKMLSSSSETIIFMFLGISTISDA 172 (195)
Q Consensus 148 fw~~l~~l~~~~iFvllG~~v~~~~ 172 (195)
.-| ..-.+-|+-+|+..+|..
T Consensus 277 Lrd----aFaVlFFvsVGmlf~P~~ 297 (408)
T COG4651 277 LRD----AFAVLFFVSVGMLFDPMI 297 (408)
T ss_pred HHH----HHHHHHHHHhhhhcCcHH
Confidence 332 334567889999887643
No 18
>PF06375 BLVR: Bovine leukaemia virus receptor (BLVR); InterPro: IPR010474 Bovine leukemia virus (BLV) is one of the most common infectious cattle viruses, with between 30 and 40% of cows in the United States being infected. It is closely related to the human T-cell leukaemia virus type 1 (HTLV-1) and has highly conserved envelope glycoprotein functional domains []. BLV is an oncogenic C-type retrovirus, which results in the animals developing a malignant lymphoma. BLV, like the human and simian T cell leukaemia viruses, is a deltaretrovirus. 182 residues at the amino-terminal of the BLV envelope glycoprotein surface unit encompass the receptor-binding domain. The metabolic activity in B cells, T cells, and thymocytes is indicated by the expression of the BLV-binding receptor []. A candidate gene of the receptor (BLVR) is related, but unique, to a gene family of the delta subunit of the adaptor protein (AP) complex 3, AP-3 []. The AP-3 complex is not clathrin-associated but is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes. ; PDB: 4AFI_B.
Probab=94.92 E-value=0.0071 Score=47.69 Aligned_cols=17 Identities=82% Similarity=0.919 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1930 10 ENKKKKKKKKKKKKKKK 26 (195)
Q Consensus 10 ~~~~~~~~~~~~~~~~~ 26 (195)
.+||+||+|||||+++|
T Consensus 84 ~kKK~KKkkKkkKk~~k 100 (154)
T PF06375_consen 84 KKKKKKKKKKKKKKSKK 100 (154)
T ss_dssp -----------------
T ss_pred hhhhccchhcccccCCC
Confidence 33344444444455544
No 19
>KOG3794|consensus
Probab=85.56 E-value=0.53 Score=42.26 Aligned_cols=6 Identities=33% Similarity=0.374 Sum_probs=2.6
Q ss_pred Hhhccc
Q psy1930 27 KKKKKK 32 (195)
Q Consensus 27 ~~~ND~ 32 (195)
+..|++
T Consensus 255 ~~s~e~ 260 (453)
T KOG3794|consen 255 SKSKEG 260 (453)
T ss_pred hhcccc
Confidence 344444
No 20
>KOG2422|consensus
Probab=85.25 E-value=0.16 Score=47.80 Aligned_cols=6 Identities=33% Similarity=0.850 Sum_probs=2.4
Q ss_pred hhhhHH
Q psy1930 115 HMSGIL 120 (195)
Q Consensus 115 ~~SGiL 120 (195)
|+.++|
T Consensus 283 HvdsLL 288 (665)
T KOG2422|consen 283 HVDSLL 288 (665)
T ss_pred chhHHH
Confidence 334443
No 21
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=84.98 E-value=1.2 Score=30.61 Aligned_cols=7 Identities=86% Similarity=1.061 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy1930 8 ERENKKK 14 (195)
Q Consensus 8 ~~~~~~~ 14 (195)
|+++|+|
T Consensus 52 ere~K~k 58 (74)
T PF15086_consen 52 EREKKKK 58 (74)
T ss_pred HHHHHHH
Confidence 3333333
No 22
>PF04956 TrbC: TrbC/VIRB2 family; InterPro: IPR007039 Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure[]. This family also contains several VirB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species [].
Probab=81.19 E-value=16 Score=25.86 Aligned_cols=36 Identities=8% Similarity=-0.085 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHhhcc
Q psy1930 55 VDLLSGLASFFVV-AVGGTVIGVIWGFLTGFVTRFTN 90 (195)
Q Consensus 55 ~s~~~~~~~f~~~-~~gGiliG~~~G~l~~~llk~~~ 90 (195)
.+....+.+.+.. +...+.+..++.....+++.+.+
T Consensus 39 ~~~l~~i~~~l~gp~~~~i~~i~ii~~g~~~~~g~~~ 75 (99)
T PF04956_consen 39 TSFLCKIIDWLTGPIGKAIAIIAIIVAGIMMMFGRQS 75 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 3455555666655 44444444444444444444433
No 23
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=80.12 E-value=13 Score=36.80 Aligned_cols=42 Identities=10% Similarity=0.180 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhcccccccCh
Q psy1930 98 IFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISH 139 (195)
Q Consensus 98 ~l~la~a~~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~ 139 (195)
.+++..++++.+++|.+..|..+..+++|++++.+....+.+
T Consensus 20 ~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP 61 (810)
T TIGR00844 20 IFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNP 61 (810)
T ss_pred HHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCCh
Confidence 345566666777777777777777778888777654433333
No 24
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.59 E-value=9.7 Score=28.41 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=16.8
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHH
Q psy1930 62 ASFFVVAVGGTVIGVIWGFLTGFV 85 (195)
Q Consensus 62 ~~f~~~~~gGiliG~~~G~l~~~l 85 (195)
..+...++.|+++|..+||++=..
T Consensus 46 ~klssefIsGilVGa~iG~llD~~ 69 (116)
T COG5336 46 FKLSSEFISGILVGAGIGWLLDKF 69 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566777888888888765443
No 25
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=78.12 E-value=21 Score=33.64 Aligned_cols=96 Identities=14% Similarity=0.067 Sum_probs=48.3
Q ss_pred hhcchhHHHHHHHHHHHHHhhccccccHHHHHH-HHHHHHHHHHH---hhhhhhhHHHHHHHHHhhhcccccccChhHHH
Q psy1930 68 AVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFI-FVMAYLAYLTA---EIFHMSGILAITFCGITMKNYVEANISHKSHT 143 (195)
Q Consensus 68 ~~gGiliG~~~G~l~~~llk~~~~~~~~~~~l~-la~a~~~y~la---e~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~ 143 (195)
=++|.++|.++|.+...++ .++|....... +.+...+|... ..-.....+|.+++.++.-... ..|+ ..
T Consensus 52 R~~GT~iGa~~~~~lv~~~---~~~p~l~~~~lal~i~~c~~~~~~~~~~~~y~~~lag~T~~iv~~~~~---~~p~-~~ 124 (650)
T PF04632_consen 52 RLIGTLIGAAAGLLLVALF---PQSPLLFLLALALWIGLCLYLSLLDRNFRSYAFMLAGYTAAIVALPAV---GNPE-QV 124 (650)
T ss_pred HHHHHHHHHHHHHHHHHHh---ccCHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhcc---cCcc-HH
Confidence 3457778888887766554 34454444333 33344444333 1123333456666655432211 1222 12
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhhcc
Q psy1930 144 TVKYAMKMLSSSSETIIFMFLGISTIS 170 (195)
Q Consensus 144 ~~~~fw~~l~~l~~~~iFvllG~~v~~ 170 (195)
.....|...+-+.-+++-+++...++|
T Consensus 125 f~~a~~R~~ei~iGi~~a~~v~~l~~P 151 (650)
T PF04632_consen 125 FDLALWRVLEILIGILCATLVSMLFFP 151 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 234455555556666666666766665
No 26
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=77.01 E-value=2.4 Score=33.42 Aligned_cols=9 Identities=44% Similarity=0.689 Sum_probs=4.0
Q ss_pred hhcchhHHH
Q psy1930 68 AVGGTVIGV 76 (195)
Q Consensus 68 ~~gGiliG~ 76 (195)
..||.+=|+
T Consensus 140 S~GG~Vh~Y 148 (155)
T PF08496_consen 140 SPGGMVHGY 148 (155)
T ss_pred cCCceeecc
Confidence 344444444
No 27
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=75.45 E-value=55 Score=28.56 Aligned_cols=97 Identities=12% Similarity=0.209 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHhhccccc------cHHH--------HHHHHHHHHHHHHHh------hhhhhhHHHHHHHHHhhhcc
Q psy1930 73 VIGVIWGFLTGFVTRFTNEVR------VIEP--------IFIFVMAYLAYLTAE------IFHMSGILAITFCGITMKNY 132 (195)
Q Consensus 73 liG~~~G~l~~~llk~~~~~~------~~~~--------~l~la~a~~~y~lae------~l~~SGiLAvvv~Gl~l~~~ 132 (195)
.+++.++++..++-++-.+.+ -.|+ ++.....|..|-.-+ .++.++.+-+-+.|++.+-.
T Consensus 61 ~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~nav~Li~~s~~I~~EAi~R~~~P~~i~~~~ml~va~~GL~vN~~ 140 (296)
T COG1230 61 ALALLLALIAIKLARRPATKRFTFGYKRLEILAAFLNALLLIVVSLLILWEAIQRLLAPPPIHYSGMLVVAIIGLVVNLV 140 (296)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHH
Confidence 346677777777776655432 1222 222233333332222 23678888888888877643
Q ss_pred cccccC---hhHHHHHHHHHHHHHHHHhHHHHHHHhhhhc
Q psy1930 133 VEANIS---HKSHTTVKYAMKMLSSSSETIIFMFLGISTI 169 (195)
Q Consensus 133 ~~~~~~---~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~ 169 (195)
.-.-+. ++....-..+++.++..+.++.=+..|+.+.
T Consensus 141 ~a~ll~~~~~~~lN~r~a~LHvl~D~Lgsv~vIia~i~i~ 180 (296)
T COG1230 141 SALLLHKGHEENLNMRGAYLHVLGDALGSVGVIIAAIVIR 180 (296)
T ss_pred HHHHhhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211111 1111222357777788888887777787764
No 28
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=75.36 E-value=47 Score=29.96 Aligned_cols=93 Identities=9% Similarity=-0.008 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHH
Q psy1930 73 VIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKML 152 (195)
Q Consensus 73 liG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l 152 (195)
+.+.+.+.+..+++++.+-++. ...+......++..+..|....+|-|..|+++.+..+. .++..+++++..+-.
T Consensus 177 L~~a~~~~~~l~~~~~~~v~~~---~~y~~lgvllW~~~~~sGVHatiaGvllGl~iP~~~~~--~~~pl~rleh~L~p~ 251 (373)
T TIGR00773 177 LLVAAVAIAVLAVLNRCGVRRL---GPYMLVGVILWFAVLKSGVHATLAGVIIGFFIPLKGKK--GESPLKRLEHVLHPW 251 (373)
T ss_pred HHHHHHHHHHHHHHHHcCCchh---hHHHHHHHHHHHHHHHcCCcHHHHHHHHeeeecccccC--CCCHHHHHHHHHHHH
Confidence 3444555566667777664322 22222222222222678999999999999999874322 122234455554443
Q ss_pred HH--HHhHHHHHHHhhhhcc
Q psy1930 153 SS--SSETIIFMFLGISTIS 170 (195)
Q Consensus 153 ~~--l~~~~iFvllG~~v~~ 170 (195)
+. ++=.+.|.-.|+.+..
T Consensus 252 v~~lilPlFAFanAGv~l~~ 271 (373)
T TIGR00773 252 VAYLILPLFAFANAGVSLQG 271 (373)
T ss_pred HHHHHHHHHHHHhcCeeeec
Confidence 32 3345557888888853
No 29
>PF09446 VMA21: VMA21-like domain; InterPro: IPR019013 The vacuolar ATPase assembly integral membrane protein VMA21 is required for the assembly of the integral membrane sector (V0 component) of the vacuolar ATPase (V-ATPase) in the endoplasmic reticulum []. This entry represents a putative short domain found in VMA21-like proteins, and which appears to contain two potential transmembrane helices.
Probab=75.28 E-value=7.3 Score=26.16 Aligned_cols=38 Identities=18% Similarity=0.454 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhh--------------hhhHHHHHHHHHhhhcc
Q psy1930 95 IEPIFIFVMAYLAYLTAEIFH--------------MSGILAITFCGITMKNY 132 (195)
Q Consensus 95 ~~~~l~la~a~~~y~lae~l~--------------~SGiLAvvv~Gl~l~~~ 132 (195)
.-.++.+.+|+++|+.....- .||+.|+++.-++++.|
T Consensus 10 ~fs~~M~~lPl~~ff~~~~~~~~~~~~~~~~~~~~~sgi~Avi~vnvVl~~Y 61 (66)
T PF09446_consen 10 FFSVLMFTLPLGTFFGFKYFLFDGFFGLSPSDNTIYSGIAAVIVVNVVLASY 61 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 345678888999998887532 68888888887777654
No 30
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=74.09 E-value=33 Score=32.13 Aligned_cols=67 Identities=10% Similarity=0.180 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhcc
Q psy1930 98 IFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTIS 170 (195)
Q Consensus 98 ~l~la~a~~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~ 170 (195)
.+.+..++.+..++.-++.+.+++=..+|+++|.+.....++. ++.+.++.+.-.++.++.|+++..
T Consensus 12 ~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~~------~~~~~la~lGli~llF~~Gle~d~ 78 (558)
T PRK10669 12 VGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVADT------KLAPELAELGVILLMFGVGLHFSL 78 (558)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccch------HHHHHHHHHHHHHHHHHhHhcCCH
Confidence 4445666666677777777788888888888887654322221 344567777777888888888864
No 31
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=72.05 E-value=26 Score=34.75 Aligned_cols=76 Identities=8% Similarity=0.148 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHH----HHHHHHHHHHHHHHhHHHHHHHhhhhcc
Q psy1930 95 IEPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSH----TTVKYAMKMLSSSSETIIFMFLGISTIS 170 (195)
Q Consensus 95 ~~~~l~la~a~~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~----~~~~~fw~~l~~l~~~~iFvllG~~v~~ 170 (195)
.+..+.+.++-+.+.+.+-++...+++=..+|+++|.+.....++... .......+.++.+.-.++.+++|++++.
T Consensus 46 lql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl 125 (832)
T PLN03159 46 LQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDI 125 (832)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 355566666666777777778888888899999998654322211100 0122356778888888888899999864
No 32
>TIGR01992 PTS-IIBC-Tre PTS system, trehalose-specific IIBC component. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Probab=72.01 E-value=35 Score=31.47 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhh
Q psy1930 97 PIFIFVMAYLAYLTAEIFHMSGILAITFCGITMK 130 (195)
Q Consensus 97 ~~l~la~a~~~y~lae~l~~SGiLAvvv~Gl~l~ 130 (195)
..+.+.-.+.+|..|..++++.+++++++++.+.
T Consensus 162 a~F~fLPIlia~saAkk~~~~p~lg~~ig~~l~~ 195 (462)
T TIGR01992 162 TAFHFLPALIGWSAVKKFGGSPILGIVLGLMLVH 195 (462)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHC
Confidence 3445555678899999999999999999998875
No 33
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=71.45 E-value=66 Score=29.53 Aligned_cols=71 Identities=8% Similarity=0.107 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhcccccc-cC----hhHHHHHHHHHHHHH--HHHhHHHHHHHhhhhcc
Q psy1930 100 IFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEAN-IS----HKSHTTVKYAMKMLS--SSSETIIFMFLGISTIS 170 (195)
Q Consensus 100 ~la~a~~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~-~~----~~~~~~~~~fw~~l~--~l~~~~iFvllG~~v~~ 170 (195)
.+.+.....+..+..|....+|-|+.|+++-...+.+ .. ++..+++.+..+-.. .++=.+.|.-.|+.+..
T Consensus 211 Y~ilg~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~V~~~ILPLFAFANaGV~l~~ 288 (423)
T PRK14853 211 LLPLGVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPLSAGVAVPVFAFFSAGVAIGG 288 (423)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhheecC
Confidence 3334556677778899999999999999996421110 00 111122333333332 33445557778888753
No 34
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=71.40 E-value=17 Score=28.88 Aligned_cols=58 Identities=22% Similarity=0.232 Sum_probs=31.4
Q ss_pred chhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHh
Q psy1930 71 GTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFHMSGILAITFCGIT 128 (195)
Q Consensus 71 GiliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~y~lae~l~~SGiLAvvv~Gl~ 128 (195)
+.++|.+.+++..++.++-......+.+-.+..+.+++.+.........-++.+++++
T Consensus 131 a~i~g~~~~~~~~~~~r~~~~~~~~~~~aa~~~~~~a~~~~~~~~~~~~~~vii~~i~ 188 (193)
T PF06738_consen 131 AFILGLLVGLLRQLLSRRRLNSFIQEFIAAFLASLLAALLARLGPPFSPSAVIIGAIM 188 (193)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHh
Confidence 4555555555555555444333344555556666666666654444455555555554
No 35
>KOG0526|consensus
Probab=70.77 E-value=1 Score=42.12 Aligned_cols=21 Identities=62% Similarity=0.760 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q psy1930 12 KKKKKKKKKKKKKKKKKKKKK 32 (195)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~ND~ 32 (195)
|++||.|-++|+||-|++.|+
T Consensus 513 K~ek~~k~~~~~k~~kk~kdp 533 (615)
T KOG0526|consen 513 KREKKEKEKEKKKKGKKKKDP 533 (615)
T ss_pred hhhhHhhhhccccCcccCCCC
Confidence 333333344444555666666
No 36
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=70.59 E-value=46 Score=31.83 Aligned_cols=71 Identities=10% Similarity=0.167 Sum_probs=52.0
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhcc
Q psy1930 94 VIEPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTIS 170 (195)
Q Consensus 94 ~~~~~l~la~a~~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~ 170 (195)
..+.++.+..+..+-.++..++.+.+++=..+|+++|.+.....++. +..+.++.+.-.++-+++|+++.+
T Consensus 7 l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~~------~~i~~laelGvv~LlF~iGLEl~~ 77 (621)
T PRK03562 7 LIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDV------ESILHFAEFGVVLMLFVIGLELDP 77 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCCH------HHHHHHHHHHHHHHHHHHHhCcCH
Confidence 35677778888888888888999999999999999997554323221 123456667777777888998865
No 37
>PRK09796 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Probab=70.47 E-value=22 Score=33.02 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhh
Q psy1930 96 EPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMK 130 (195)
Q Consensus 96 ~~~l~la~a~~~y~lae~l~~SGiLAvvv~Gl~l~ 130 (195)
+..+.+.=.+++|..|..+++|.++++.+++..+.
T Consensus 155 ~a~FyFLPi~v~~saak~f~~np~lg~~ig~~L~~ 189 (472)
T PRK09796 155 DGAFFFLPLMVAASAAIKFKTNMSLAIAIAGVLVH 189 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHC
Confidence 35667777889999999999999999999999875
No 38
>PF13945 NST1: Salt tolerance down-regulator
Probab=68.38 E-value=0.8 Score=37.37 Aligned_cols=14 Identities=21% Similarity=0.169 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHH
Q psy1930 140 KSHTTVKYAMKMLS 153 (195)
Q Consensus 140 ~~~~~~~~fw~~l~ 153 (195)
+.++.+..||+.|+
T Consensus 102 eEre~LkeFW~SL~ 115 (190)
T PF13945_consen 102 EEREKLKEFWESLS 115 (190)
T ss_pred HHHHHHHHHHHccC
Confidence 44566666665543
No 39
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=68.26 E-value=56 Score=31.06 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhcc
Q psy1930 95 IEPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTIS 170 (195)
Q Consensus 95 ~~~~l~la~a~~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~ 170 (195)
.+.++.++.+.++-.++.-++.+.+++=..+|+++|.+.....++. +-.+.++.+.-.++.+++|+++..
T Consensus 8 ~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~~------~~i~~laelGvv~LLF~iGLel~~ 77 (601)
T PRK03659 8 TAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISDV------DEILHFSELGVVFLMFIIGLELNP 77 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCcH------HHHHHHHHHHHHHHHHHHHhcCCH
Confidence 4566667777777777788888899999999999987554333221 113345666677777778888764
No 40
>PRK09586 murP PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Probab=68.17 E-value=29 Score=32.28 Aligned_cols=34 Identities=15% Similarity=0.388 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhh
Q psy1930 96 EPIFIFVMAYLAYLTAEIFHMSGILAITFCGITM 129 (195)
Q Consensus 96 ~~~l~la~a~~~y~lae~l~~SGiLAvvv~Gl~l 129 (195)
+..+.+.-.+++|..|..+++|.++++.+++..+
T Consensus 169 ~a~F~FLPi~va~saAk~f~~n~~lg~~i~~~l~ 202 (476)
T PRK09586 169 KGLFTFLSILIGYNAQQAFGGTGVNGAIIASLFL 202 (476)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHh
Confidence 3456677788899999999999999999999886
No 41
>PF13945 NST1: Salt tolerance down-regulator
Probab=66.06 E-value=0.62 Score=38.02 Aligned_cols=13 Identities=8% Similarity=-0.036 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHh
Q psy1930 145 VKYAMKMLSSSSE 157 (195)
Q Consensus 145 ~~~fw~~l~~l~~ 157 (195)
.....+.+...++
T Consensus 162 y~~~y~~l~~~~~ 174 (190)
T PF13945_consen 162 YDAYYEELEQYAN 174 (190)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555554444
No 42
>PF05178 Kri1: KRI1-like family; InterPro: IPR018034 The Kri1 protein is also known as KRR1-interacting protein 1. The Saccharomyces cerevisiae member of this family is found to be required for the assembly of preribosomal 40S subunits in the nucleolus []. KRR1 is highly expressed in dividing cells and its expression ceases almost completely when cells enter the stationary phase.
Probab=65.00 E-value=8.7 Score=28.10 Aligned_cols=26 Identities=38% Similarity=0.529 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1930 4 KRRKERENKKKKKKKKKKKKKKKKKK 29 (195)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (195)
|.||++++.+|+.--++.|.-|++-.
T Consensus 1 KeRK~~Ek~~k~eElkrlK~lK~~Ei 26 (101)
T PF05178_consen 1 KERKEEEKQEKEEELKRLKNLKRKEI 26 (101)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777666666665555544
No 43
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=64.97 E-value=1e+02 Score=28.17 Aligned_cols=106 Identities=14% Similarity=0.151 Sum_probs=62.2
Q ss_pred cchhHHHHHHHHHHHHHhhccccc-----cHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhcccc----------
Q psy1930 70 GGTVIGVIWGFLTGFVTRFTNEVR-----VIEPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVE---------- 134 (195)
Q Consensus 70 gGiliG~~~G~l~~~llk~~~~~~-----~~~~~l~la~a~~~y~lae~l~~SGiLAvvv~Gl~l~~~~~---------- 134 (195)
.|.+.|+.--++..++.++...-. .......++.+..+|.....=--.--..++++|+++++.+-
T Consensus 301 ~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi 380 (432)
T PF06963_consen 301 LGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQI 380 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHh
Confidence 456666666666677777765221 12334455566666655431101224566778888887431
Q ss_pred --cccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhcccchhhHH
Q psy1930 135 --ANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDAHVWNT 177 (195)
Q Consensus 135 --~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~~~~~~~~ 177 (195)
.+.+++.|-.....-..+..++|.+.|++ ++ +++.+.+..+
T Consensus 381 ~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~-~i-i~~~P~~F~~ 423 (432)
T PF06963_consen 381 MQENVPESERGAVSGVQNSLQSLFELLSFVL-TI-IFPRPSQFGW 423 (432)
T ss_pred hcccCCHHHhhHHHHHHHHHHHHHHHHHHHH-Hh-ccCChHhcCh
Confidence 23455556666777777788888888887 34 4455544444
No 44
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=64.94 E-value=1.1e+02 Score=27.98 Aligned_cols=101 Identities=17% Similarity=0.175 Sum_probs=59.0
Q ss_pred HHHHHHhhccchhhHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhccc----cccHHH
Q psy1930 22 KKKKKKKKKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNE----VRVIEP 97 (195)
Q Consensus 22 ~~~~~~~~ND~~AIVLF~~~~~~~~~g~~~~~~~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk~~~~----~~~~~~ 97 (195)
.|+=+|+|=-++.+-+|..+.-....- +-..+.+...++|.++=.++|++.++.=+++.- -..-.+
T Consensus 11 ~~~l~~~KIg~ipLPly~~~~ivi~v~----------~~~~~lP~~mlg~favm~vlG~llg~IG~riPI~nk~iGG~aI 80 (438)
T COG3493 11 MKNLSETKIGGIPLPLYAFLAIVIIVV----------VYLGKLPSDMLGGFAVMFVLGALLGEIGKRIPIVNKYIGGGAI 80 (438)
T ss_pred hccchhceecccchHHHHHHHHHHHHH----------HHHccCcHHHHHHHHHHHHHHHHHHHhcccCcchhhccCCchH
Confidence 344455777788888887766533210 001222333344444445566666666555431 123345
Q ss_pred HHHHHHHHHHH----------HHHhhhhhhhHHHHHHHHHhhhcc
Q psy1930 98 IFIFVMAYLAY----------LTAEIFHMSGILAITFCGITMKNY 132 (195)
Q Consensus 98 ~l~la~a~~~y----------~lae~l~~SGiLAvvv~Gl~l~~~ 132 (195)
...+.-+|+.| .+.|..+-|+++=.++++++.++-
T Consensus 81 l~~fvaa~~v~~~llp~~~i~avt~fm~~snFL~fyIA~LI~GSI 125 (438)
T COG3493 81 LALFVAAYLVFYNLLPSNVIKAVTNFMGKSNFLDFYIAALIVGSI 125 (438)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhcCCChHHHHHHHHHHhhh
Confidence 66677777777 466778999998877777777763
No 45
>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.
Probab=64.75 E-value=2.1 Score=36.33 Aligned_cols=19 Identities=53% Similarity=0.473 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhccc
Q psy1930 14 KKKKKKKKKKKKKKKKKKK 32 (195)
Q Consensus 14 ~~~~~~~~~~~~~~~~ND~ 32 (195)
+++++||++|+.|+|=+++
T Consensus 208 ~~~~~kk~~Kk~R~Wd~~g 226 (279)
T PF04086_consen 208 KKKKPKKKGKKMRKWDDGG 226 (279)
T ss_dssp -------------------
T ss_pred CCCCcccCCCCCCccCCCC
Confidence 3344456678889999876
No 46
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=62.56 E-value=71 Score=27.61 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=19.6
Q ss_pred hcchhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHH
Q psy1930 69 VGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAY 108 (195)
Q Consensus 69 ~gGiliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~y 108 (195)
.+|+++|++++.+.++++.+...+-.+...+.....++.+
T Consensus 154 ~gg~~~Gl~~~~~~g~li~~~~~~i~l~~FF~~t~~lL~l 193 (283)
T TIGR00145 154 IGPAVAGLIVAVVVGVLLYRGGSRLSLKIFFILSSSLLLF 193 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 3456666666666666655443222244444444333333
No 47
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=61.93 E-value=5.7 Score=30.15 Aligned_cols=21 Identities=43% Similarity=0.686 Sum_probs=14.8
Q ss_pred hcchhHHHHHHHHHHHHHhhc
Q psy1930 69 VGGTVIGVIWGFLTGFVTRFT 89 (195)
Q Consensus 69 ~gGiliG~~~G~l~~~llk~~ 89 (195)
+.|+++|+++|+++.++...-
T Consensus 3 ~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 457777888887777776544
No 48
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=61.90 E-value=1.2 Score=37.98 Aligned_cols=10 Identities=20% Similarity=0.155 Sum_probs=4.0
Q ss_pred HHHHHHHHHh
Q psy1930 103 MAYLAYLTAE 112 (195)
Q Consensus 103 ~a~~~y~lae 112 (195)
++..+.-.+|
T Consensus 132 vs~SalRa~d 141 (252)
T PF14617_consen 132 VSSSALRAAD 141 (252)
T ss_pred EcchHHHHHH
Confidence 3333444444
No 49
>PF01970 TctA: Tripartite tricarboxylate transporter TctA family; InterPro: IPR002823 Members of this prokaryotic family have no known function. Members are predicted to be integral membrane proteins and are similar to a protein in a tartrate utilisation region (TAR) of Agrobacterium vitis a common pathogen of grapevine. Most grapevine strains utilise tartrate, an abundant compound in grapevine [].
Probab=61.86 E-value=63 Score=29.49 Aligned_cols=74 Identities=14% Similarity=0.212 Sum_probs=46.9
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHhhcc--ccccHHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhhcccc
Q psy1930 61 LASFFVVAVGGTVIGVIWGFLTGFVTRFTN--EVRVIEPIFIFVMAYLAYLTAEIF-HMSGILAITFCGITMKNYVE 134 (195)
Q Consensus 61 ~~~f~~~~~gGiliG~~~G~l~~~llk~~~--~~~~~~~~l~la~a~~~y~lae~l-~~SGiLAvvv~Gl~l~~~~~ 134 (195)
+..++.....+-++.+.+++.....+.++. +++.+...+...+..++|.....+ +.--.+..-+.|+++..++.
T Consensus 336 ~~~~~~~~~ia~i~~~~i~~~~~~~~~~i~~ip~~~L~~~il~~~~vgay~~~~~~~dv~v~l~~g~iG~~~~~~~~ 412 (419)
T PF01970_consen 336 VYTLFASMLIANILMLLIGLFLARYFAKILKIPYRILSPIILVLCVVGAYAINGSMFDVWVMLVFGLIGYFMRRFGF 412 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 334444444444444455554444433332 234577788888899999999865 77777777788888887654
No 50
>PF08188 Protamine_3: Spermatozal protamine family; InterPro: IPR012601 This entry consists of the spermatozal protamines. Spermatozal protamines play an important role in remodelling of the sperm chromatin during mammalian spermiogenesis. Nuclear elongation and chromatin condensation are concomitant with modifications in the basic protein complement associated with DNA. Somatic histones are initially replaced by testis-specific histone variants, then by transitional proteins, and ultimately by protamines [].; GO: 0003677 DNA binding, 0035092 sperm chromatin condensation, 0000228 nuclear chromosome
Probab=61.64 E-value=13 Score=22.64 Aligned_cols=27 Identities=30% Similarity=0.621 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy1930 5 RRKERENKKKKKKKKKKKKKKKKKKKK 31 (195)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~ND 31 (195)
||..-++|.|--...|-.|..|+.||.
T Consensus 3 rrhsmkkkrksvrrrktrknqrkrkns 29 (48)
T PF08188_consen 3 RRHSMKKKRKSVRRRKTRKNQRKRKNS 29 (48)
T ss_pred chhHHHHHHHHHHHHHHHhhHHHhhhh
Confidence 333334444444444555556666663
No 51
>COG2056 Predicted permease [General function prediction only]
Probab=61.09 E-value=1.3e+02 Score=27.37 Aligned_cols=35 Identities=17% Similarity=0.380 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHhh---cchhHHHHHHHHHHHHHhhcc
Q psy1930 56 DLLSGLASFFVVAV---GGTVIGVIWGFLTGFVTRFTN 90 (195)
Q Consensus 56 s~~~~~~~f~~~~~---gGiliG~~~G~l~~~llk~~~ 90 (195)
+.......|..|.. .+..+|.+.|++.-.+.+-.+
T Consensus 245 alvaiv~af~vQl~~~~~smilgal~gliv~~~~gv~~ 282 (444)
T COG2056 245 ALVAIVVAFAVQLLTFTDSMILGALAGLIVFFLSGVIK 282 (444)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhccee
Confidence 34445556666654 589999999988888876665
No 52
>PF05106 Phage_holin_3: Phage holin family (Lysis protein S); InterPro: IPR006481 This entry is represented by the Bacteriophage lambda, GpS. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=58.80 E-value=34 Score=24.80 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=30.0
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhcc
Q psy1930 93 RVIEPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNY 132 (195)
Q Consensus 93 ~~~~~~l~la~a~~~y~lae~l~~SGiLAvvv~Gl~l~~~ 132 (195)
..+|..++=++++.+..+.|++|.+.=+|+++.| ++|..
T Consensus 46 ~llea~lCg~lal~~~~~L~~~gl~~~~a~~~g~-~IGfl 84 (100)
T PF05106_consen 46 RLLEALLCGLLALFARSLLEYFGLPQSLAVFIGG-FIGFL 84 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhee-eeecc
Confidence 4578888888888888888999999888886655 44543
No 53
>TIGR01594 holin_lambda phage holin, lambda family. This model represents one of a large number of mutally dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=58.80 E-value=64 Score=23.79 Aligned_cols=59 Identities=10% Similarity=0.134 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHhhcc----ccccHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhcc
Q psy1930 73 VIGVIWGFLTGFVTRFTN----EVRVIEPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNY 132 (195)
Q Consensus 73 liG~~~G~l~~~llk~~~----~~~~~~~~l~la~a~~~y~lae~l~~SGiLAvvv~Gl~l~~~ 132 (195)
+.|.+++.+.++++-.-+ .+..+|..++=++++..-.+.|+++.+.-+|+++ |.++|..
T Consensus 24 i~g~~lA~~mA~LR~~Y~g~~~~~~llea~mCg~la~~~~~~l~~~g~~~~~a~~~-g~~IGfl 86 (107)
T TIGR01594 24 GQGALLALAIAYLRIRYMGGKFKRKLIDALMCAAIALVAASALDFLGLPTSLSPFL-GGMIGFV 86 (107)
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH-hhheeec
Confidence 455556666666653322 2235677777777777777888899988877754 4455543
No 54
>COG4603 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=57.53 E-value=35 Score=30.52 Aligned_cols=49 Identities=16% Similarity=0.324 Sum_probs=38.9
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Q psy1930 62 ASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEI 113 (195)
Q Consensus 62 ~~f~~~~~gGiliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~y~lae~ 113 (195)
..++..++.|.+.|.+.|.+-+++.-+.+- .|++.++.+.|.++++.++
T Consensus 113 l~~p~a~l~g~~~G~~wa~ipg~Lka~f~~---nEVIttiMlNyIa~~l~~~ 161 (356)
T COG4603 113 LALPLALLAGAAGGGLWALIPGLLKARFGV---NEVITTIMLNYIAVYLLNY 161 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc---cHHHHHHHHHHHHHHHHHH
Confidence 346677778888888888888888877764 4889999999999888775
No 55
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=56.49 E-value=84 Score=28.28 Aligned_cols=72 Identities=10% Similarity=0.209 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhccc
Q psy1930 95 IEPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISD 171 (195)
Q Consensus 95 ~~~~l~la~a~~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~~ 171 (195)
.+..+.+..+...=.+.+-++...+++=..+|+++|+.......+. .+..+.++.+.-.++..++|++.+..
T Consensus 9 ~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~-----~~~i~~laelGvi~LlF~~GLE~~~~ 80 (397)
T COG0475 9 LQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIES-----SEIIELLAELGVVFLLFLIGLEFDLE 80 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCc-----hHHHHHHHHHhHHHHHHHHHHCcCHH
Confidence 4455555555555578888999999999999999998433222222 35566677888888999999998753
No 56
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.53 E-value=8.5 Score=29.54 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=15.9
Q ss_pred hhcchhHHHHHHHHHHHHHhhc
Q psy1930 68 AVGGTVIGVIWGFLTGFVTRFT 89 (195)
Q Consensus 68 ~~gGiliG~~~G~l~~~llk~~ 89 (195)
.+.|+++|+++|+++..+.+..
T Consensus 11 a~igLvvGi~IG~li~Rlt~~~ 32 (138)
T COG3105 11 ALIGLVVGIIIGALIARLTNRK 32 (138)
T ss_pred HHHHHHHHHHHHHHHHHHcchh
Confidence 4457888888888887777543
No 57
>TIGR00893 2A0114 d-galactonate transporter.
Probab=54.88 E-value=1.2e+02 Score=25.09 Aligned_cols=33 Identities=6% Similarity=-0.040 Sum_probs=19.8
Q ss_pred cChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhc
Q psy1930 137 ISHKSHTTVKYAMKMLSSSSETIIFMFLGISTI 169 (195)
Q Consensus 137 ~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~ 169 (195)
.+++.+.....+......+...+.-.+.|....
T Consensus 340 ~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~ 372 (399)
T TIGR00893 340 APGNIAGLTGGLINSLGNLGGIVGPIVIGAIAA 372 (399)
T ss_pred cChhHHHHHHHHHHHHHHHhhhhhhHHhhhhcc
Confidence 344555556666766666666666666665543
No 58
>PRK11007 PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Probab=54.37 E-value=1.1e+02 Score=28.52 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhh
Q psy1930 97 PIFIFVMAYLAYLTAEIFHMSGILAITFCGITMK 130 (195)
Q Consensus 97 ~~l~la~a~~~y~lae~l~~SGiLAvvv~Gl~l~ 130 (195)
..+.+.=.+++|..|..+++|.++++.+++..+.
T Consensus 166 a~FyFLPi~va~sAaK~f~~np~lg~~ig~~L~~ 199 (473)
T PRK11007 166 AIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVS 199 (473)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhC
Confidence 4556666788999999999999999999998875
No 59
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=54.07 E-value=80 Score=23.07 Aligned_cols=45 Identities=13% Similarity=0.016 Sum_probs=21.8
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHhhccccccH-HHHHHHHHHHHHH
Q psy1930 61 LASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVI-EPIFIFVMAYLAY 108 (195)
Q Consensus 61 ~~~f~~~~~gGiliG~~~G~l~~~llk~~~~~~~~-~~~l~la~a~~~y 108 (195)
+..+.+++++.+++|+.+| .|+=++....+.. -+.+.+.++.++|
T Consensus 45 ~g~IG~~~v~pil~G~~lG---~WLD~~~~t~~~~tl~~lllGv~~G~~ 90 (100)
T TIGR02230 45 FGLIGWSVAIPTLLGVAVG---IWLDRHYPSPFSWTLTMLIVGVVIGCL 90 (100)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHhhcCCCcHHHHHHHHHHHHHHHH
Confidence 3444556666666666666 3444555443332 2333344444444
No 60
>KOG3962|consensus
Probab=53.89 E-value=3.4 Score=34.63 Aligned_cols=6 Identities=33% Similarity=0.551 Sum_probs=2.5
Q ss_pred HHHHHH
Q psy1930 103 MAYLAY 108 (195)
Q Consensus 103 ~a~~~y 108 (195)
..|+=|
T Consensus 100 sGyGKY 105 (246)
T KOG3962|consen 100 SGYGKY 105 (246)
T ss_pred ccccce
Confidence 344444
No 61
>TIGR03510 XapX XapX domain. This model describes an uncharacterized small, hydrophobic protein of about 50 amino acids, found between the xapB and xapR genes of the E. coli xanthosine utilization system, and homologous regions in other small proteins, such as the N-terminal region of DUF1427 (Pfam model pfam07235). We name this domain XapX, as it comprises the full length of the protein encoded between the genes for the well-studied XapB and XapR proteins.
Probab=53.56 E-value=43 Score=21.31 Aligned_cols=43 Identities=12% Similarity=0.041 Sum_probs=21.3
Q ss_pred cchhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHh
Q psy1930 70 GGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAE 112 (195)
Q Consensus 70 gGiliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~y~lae 112 (195)
.|.+.|+++|.+..++--.+...|.+.-++-+.--|..|.+.+
T Consensus 4 lsl~~G~~vG~~~~~l~vp~PAPP~laGl~gi~gm~~G~~~~~ 46 (49)
T TIGR03510 4 LSLGAGLLVGALYSLLKVPSPAPPVLAGLVGLLGMLLGEQAVP 46 (49)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHhHHHHH
Confidence 3556666666666655545544444432344444444444433
No 62
>PF12821 DUF3815: Protein of unknown function (DUF3815); InterPro: IPR024528 This domain is found in uncharacterised predicted membrane proteins.
Probab=53.11 E-value=67 Score=23.99 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhcc
Q psy1930 94 VIEPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNY 132 (195)
Q Consensus 94 ~~~~~l~la~a~~~y~lae~l~~SGiLAvvv~Gl~l~~~ 132 (195)
.....+.-.+++..|......+.+..++.++++++++-.
T Consensus 24 l~~~~l~g~~~~~v~~~~~~~~~~~~~a~f~aa~~vg~~ 62 (130)
T PF12821_consen 24 LPWAGLIGALGWLVYLLLSAFGLGSFVATFVAAFVVGLL 62 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 455666777778888777667777777777777777654
No 63
>KOG1650|consensus
Probab=52.80 E-value=78 Score=31.27 Aligned_cols=99 Identities=9% Similarity=0.037 Sum_probs=55.3
Q ss_pred hccchhhHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcccc---ccHHHHHHHHHHH
Q psy1930 29 KKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEV---RVIEPIFIFVMAY 105 (195)
Q Consensus 29 ~ND~~AIVLF~~~~~~~~~g~~~~~~~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk~~~~~---~~~~~~l~la~a~ 105 (195)
.||..+..++.......+.+. . +.......+...++..+..=+++=-+..|+.++..+. +......++...+
T Consensus 194 v~dv~~~~ll~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~l~~~~v~~p~~~wi~kr~pe~~~~~~~~~~~~l~~vl 268 (769)
T KOG1650|consen 194 VNDVAGWILLALALAFSSELK--L---SPLRSVWDLVLVIGFVLFLFFVVRPLMKWIIKRTPEGKPVSDAYICVTLLGVL 268 (769)
T ss_pred hhhHHHHHHHHHHHHHhccCC--C---cchHHHHHHHHHHHHHHheeeehhhhHHHHhhcCCCCCccccceehhhHHHHH
Confidence 578888877777766654321 0 1111122222222222222222233445555553211 2355667777788
Q ss_pred HHHHHHhhhh-hhhHHHHHHHHHhhhcc
Q psy1930 106 LAYLTAEIFH-MSGILAITFCGITMKNY 132 (195)
Q Consensus 106 ~~y~lae~l~-~SGiLAvvv~Gl~l~~~ 132 (195)
.+....|.++ ...+...++.|+.+-+-
T Consensus 269 ~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~ 296 (769)
T KOG1650|consen 269 ASAFLTDLIGGIHSIFGAFILGLAIPHG 296 (769)
T ss_pred HHHHHHHHhccccccchhheEEEecCCC
Confidence 8888888766 78889999999998763
No 64
>PF15179 Myc_target_1: Myc target protein 1
Probab=52.46 E-value=20 Score=29.14 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHh
Q psy1930 57 LLSGLASFFVVAVGGTVIGVIWGFLTGFVTR 87 (195)
Q Consensus 57 ~~~~~~~f~~~~~gGiliG~~~G~l~~~llk 87 (195)
+...+..|..+.+.|+++|.++=.+..|+-|
T Consensus 18 ~~~lIlaF~vSm~iGLviG~li~~LltwlSR 48 (197)
T PF15179_consen 18 WEDLILAFCVSMAIGLVIGALIWALLTWLSR 48 (197)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666655555555555555555543
No 65
>COG4061 MtrC Tetrahydromethanopterin S-methyltransferase, subunit C [Coenzyme metabolism]
Probab=52.22 E-value=1.4e+02 Score=25.04 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHHHHHH-----------hhhhhhhHHHHHHHHHhhh
Q psy1930 94 VIEPIFIFVMAYLAYLTA-----------EIFHMSGILAITFCGITMK 130 (195)
Q Consensus 94 ~~~~~l~la~a~~~y~la-----------e~l~~SGiLAvvv~Gl~l~ 130 (195)
+.|+...=+++.++|..+ |+.=.+|.+|+...--.|+
T Consensus 136 ~teis~agalallg~s~aiaGsft~qav~~~vianG~iallfii~~ma 183 (262)
T COG4061 136 MTEISGAGALALLGFSVAIAGSFTPQAVIDYVIANGMIALLFIIAGMA 183 (262)
T ss_pred HHHHHhhhHHHHHHHHHHhhcCCcHHHHHHHHHhccHHHHHHHHhhhh
Confidence 345555555555555443 2345678888865433343
No 66
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=51.28 E-value=24 Score=26.47 Aligned_cols=46 Identities=13% Similarity=-0.066 Sum_probs=25.5
Q ss_pred HhhcchhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHh
Q psy1930 67 VAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAE 112 (195)
Q Consensus 67 ~~~gGiliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~y~lae 112 (195)
+++.|+..|+++|.+....-+.......+-+.-.++.+.++|..|.
T Consensus 43 slL~Gi~~G~~vG~~~fl~~~~~~~A~nwavgsF~l~s~~~we~Cr 88 (118)
T PF12597_consen 43 SLLYGIAGGFGVGGLRFLFTSNPRKAANWAVGSFFLGSLGSWEYCR 88 (118)
T ss_pred HHHHHHHHHHHHHhhhhcccCCCccchhhhhHHHHHHHHHHHHHHH
Confidence 3555777777777666555555544333444444555555555554
No 67
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=51.27 E-value=60 Score=30.87 Aligned_cols=21 Identities=19% Similarity=0.599 Sum_probs=16.5
Q ss_pred hhcchhHHHHHHHHHHHHHhh
Q psy1930 68 AVGGTVIGVIWGFLTGFVTRF 88 (195)
Q Consensus 68 ~~gGiliG~~~G~l~~~llk~ 88 (195)
++||++.|++.||+..|+.|+
T Consensus 316 FlG~Ilag~lagyv~~~l~K~ 336 (563)
T PRK10712 316 FIGGIIAGFLAGYVAKLISTK 336 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 567788888888888887777
No 68
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=51.17 E-value=1.4e+02 Score=24.79 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=16.9
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHH
Q psy1930 62 ASFFVVAVGGTVIGVIWGFLTGFVT 86 (195)
Q Consensus 62 ~~f~~~~~gGiliG~~~G~l~~~ll 86 (195)
..++..++.|.++|.++|++.+..-
T Consensus 9 ~~~~~~illg~~iGg~~G~~~~~~~ 33 (248)
T PF11368_consen 9 LRFLLLILLGGLIGGFIGFFIGRIG 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555567778888887777666
No 69
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=50.64 E-value=13 Score=25.25 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=11.1
Q ss_pred hcchhHHHHHHHHHHHHH
Q psy1930 69 VGGTVIGVIWGFLTGFVT 86 (195)
Q Consensus 69 ~gGiliG~~~G~l~~~ll 86 (195)
+.|+++|.++|.++++++
T Consensus 2 ~~g~l~Ga~~Ga~~glL~ 19 (74)
T PF12732_consen 2 LLGFLAGAAAGAAAGLLF 19 (74)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 346666666666666665
No 70
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=50.60 E-value=8.7 Score=26.06 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=16.2
Q ss_pred HHHHhhcchhHHHHHHHHHH
Q psy1930 64 FFVVAVGGTVIGVIWGFLTG 83 (195)
Q Consensus 64 f~~~~~gGiliG~~~G~l~~ 83 (195)
|+..++.|.++|.++|++.+
T Consensus 1 F~~g~l~Ga~~Ga~~glL~a 20 (74)
T PF12732_consen 1 FLLGFLAGAAAGAAAGLLFA 20 (74)
T ss_pred CHHHHHHHHHHHHHHHHHhC
Confidence 45677889999999999963
No 71
>TIGR01148 mtrC N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit C. coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=49.25 E-value=1.5e+02 Score=25.38 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=20.5
Q ss_pred cHHHHHHHHHHHHHHHHH-----------hhhhhhhHHHHHH--HHHhhhc
Q psy1930 94 VIEPIFIFVMAYLAYLTA-----------EIFHMSGILAITF--CGITMKN 131 (195)
Q Consensus 94 ~~~~~l~la~a~~~y~la-----------e~l~~SGiLAvvv--~Gl~l~~ 131 (195)
..|....=+++.+.|..+ +..=.+|++|+.+ +|+.+-|
T Consensus 136 mtels~agaLailG~s~aiaGsf~~~~~~~~vi~~G~IAl~Fi~~~mAilH 186 (265)
T TIGR01148 136 MTEISCAGTLALLGLSVAIAGSFTWQAVISYVIANGYIALLFIIGGMAILH 186 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 455555555566665444 2234578888855 4444433
No 72
>PRK10457 hypothetical protein; Provisional
Probab=49.15 E-value=90 Score=21.85 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=16.3
Q ss_pred hcchhHHHHHHHHHHHHHhhc
Q psy1930 69 VGGTVIGVIWGFLTGFVTRFT 89 (195)
Q Consensus 69 ~gGiliG~~~G~l~~~llk~~ 89 (195)
+.-+++|.+.|++..++++.-
T Consensus 4 i~~iiiG~iaG~lA~~i~pg~ 24 (82)
T PRK10457 4 LSWIIFGLIAGILAKWIMPGK 24 (82)
T ss_pred HHHHHHHHHHHHHHHHhcCCC
Confidence 345788999999998888653
No 73
>PRK11677 hypothetical protein; Provisional
Probab=48.61 E-value=12 Score=28.94 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=12.8
Q ss_pred hcchhHHHHHHHHHHHHHh
Q psy1930 69 VGGTVIGVIWGFLTGFVTR 87 (195)
Q Consensus 69 ~gGiliG~~~G~l~~~llk 87 (195)
++|+++|+++|+++..+..
T Consensus 7 ~i~livG~iiG~~~~R~~~ 25 (134)
T PRK11677 7 LIGLVVGIIIGAVAMRFGN 25 (134)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 3567777777777776654
No 74
>PF15179 Myc_target_1: Myc target protein 1
Probab=48.52 E-value=19 Score=29.27 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=28.7
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHhhcccc
Q psy1930 61 LASFFVVAVGGTVIGVIWGFLTGFVTRFTNEV 92 (195)
Q Consensus 61 ~~~f~~~~~gGiliG~~~G~l~~~llk~~~~~ 92 (195)
..+++..+-.++++|+++|-++..++.++.+.
T Consensus 18 ~~~lIlaF~vSm~iGLviG~li~~LltwlSRR 49 (197)
T PF15179_consen 18 WEDLILAFCVSMAIGLVIGALIWALLTWLSRR 49 (197)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57789999999999999999999999998754
No 75
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=48.47 E-value=6 Score=26.65 Aligned_cols=19 Identities=37% Similarity=0.389 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhhccchh
Q psy1930 16 KKKKKKKKKKKKKKKKKKK 34 (195)
Q Consensus 16 ~~~~~~~~~~~~~~ND~~A 34 (195)
||.=-|||.|||....+++
T Consensus 47 kkpvskkk~k~e~lkqgv~ 65 (69)
T PF04689_consen 47 KKPVSKKKMKRERLKQGVS 65 (69)
T ss_pred CCcccHHHHHHHHHhccCC
Confidence 3334456666777666654
No 76
>PRK05326 potassium/proton antiporter; Reviewed
Probab=47.73 E-value=1.5e+02 Score=27.85 Aligned_cols=71 Identities=11% Similarity=0.087 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhcc
Q psy1930 96 EPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTIS 170 (195)
Q Consensus 96 ~~~l~la~a~~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~ 170 (195)
...+.+.++..+..+++-++...++.-..+|+.+|.........+. .+..+.++.++-.++.+..|+.+..
T Consensus 10 ~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~----~~~~~~i~~l~L~~iLF~~Gl~~~~ 80 (562)
T PRK05326 10 IGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDN----YPLAYLVGNLALAVILFDGGLRTRW 80 (562)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCc----HHHHHHHHHHHHHHHHHcCccCCCH
Confidence 3445556666666677777788888888888888865432121111 1234455566666666666776643
No 77
>TIGR02005 PTS-IIBC-alpha PTS system, alpha-glucoside-specific IIBC component. This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose.
Probab=47.40 E-value=57 Score=30.74 Aligned_cols=22 Identities=9% Similarity=0.117 Sum_probs=16.7
Q ss_pred HHHhhhhhhhHHHHHHHHHhhh
Q psy1930 109 LTAEIFHMSGILAITFCGITMK 130 (195)
Q Consensus 109 ~lae~l~~SGiLAvvv~Gl~l~ 130 (195)
.+++.+..||.+.+++.|+.=+
T Consensus 202 ~l~~~i~~~g~~G~fiyG~leR 223 (524)
T TIGR02005 202 SLQAFLISSGYIGVWLYTFLER 223 (524)
T ss_pred HHHHHHHhCCchHHHHHHHHHH
Confidence 3455677789999999998654
No 78
>KOG3925|consensus
Probab=47.16 E-value=15 Score=32.77 Aligned_cols=11 Identities=18% Similarity=0.504 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q psy1930 101 FVMAYLAYLTA 111 (195)
Q Consensus 101 la~a~~~y~la 111 (195)
++...+.|+.|
T Consensus 135 ~L~~lLqYfet 145 (371)
T KOG3925|consen 135 LLARLLQYFET 145 (371)
T ss_pred HHHHHHhhccC
Confidence 44455555444
No 79
>COG0672 FTR1 High-affinity Fe2+/Pb2+ permease [Inorganic ion transport and metabolism]
Probab=47.09 E-value=2.2e+02 Score=25.71 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=16.6
Q ss_pred hhcchhHHHHHHHHHHHHHhhcc
Q psy1930 68 AVGGTVIGVIWGFLTGFVTRFTN 90 (195)
Q Consensus 68 ~~gGiliG~~~G~l~~~llk~~~ 90 (195)
...|++++.++|++..++.....
T Consensus 177 a~~Gl~~a~~lg~~i~~~~~~~~ 199 (383)
T COG0672 177 AVAGLAVALVLGFLIYWGGIKLN 199 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677777777777777776654
No 80
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=45.78 E-value=2.6e+02 Score=26.26 Aligned_cols=46 Identities=17% Similarity=0.245 Sum_probs=24.0
Q ss_pred HHhhcchhHHHHHHHHHHH-HHhhccccccHHHHHHHHHHHHHHHHH
Q psy1930 66 VVAVGGTVIGVIWGFLTGF-VTRFTNEVRVIEPIFIFVMAYLAYLTA 111 (195)
Q Consensus 66 ~~~~gGiliG~~~G~l~~~-llk~~~~~~~~~~~l~la~a~~~y~la 111 (195)
..++.|.++|.++|.+..+ ++-+.++.+.+-.++...+..+.|..+
T Consensus 390 ~~~~~G~l~~~~~a~~~~~~vlP~~~~f~~L~l~l~~~l~~~~~~~~ 436 (650)
T PF04632_consen 390 RLFLIGALLGAVLAFLYLFFVLPHLDGFPLLALVLAPFLFLGGLLMA 436 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHc
Confidence 3455677777777777765 445555543333333333333344444
No 81
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=45.34 E-value=1.3e+02 Score=23.99 Aligned_cols=17 Identities=6% Similarity=0.084 Sum_probs=11.8
Q ss_pred ccchhhHHH-HHHHHHHh
Q psy1930 30 KKKKKRVLY-HMFEAYTE 46 (195)
Q Consensus 30 ND~~AIVLF-~~~~~~~~ 46 (195)
-|+.+++.+ ..|.+..+
T Consensus 14 iDa~~fl~~~~~F~s~~T 31 (209)
T PF06912_consen 14 IDAYSFLALGGVFVSFMT 31 (209)
T ss_pred HHHHHHHHHhchHHHHhH
Confidence 478888887 67766554
No 82
>PF12936 Kri1_C: KRI1-like family C-terminal; InterPro: IPR024626 The yeast member of the Kri1-like family (Kri1p) is found to be required for 40S ribosome biogenesis in the nucleolus []. This entry represents the C-terminal domain of this protein family.
Probab=45.21 E-value=19 Score=25.95 Aligned_cols=14 Identities=57% Similarity=0.584 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhh
Q psy1930 16 KKKKKKKKKKKKKK 29 (195)
Q Consensus 16 ~~~~~~~~~~~~~~ 29 (195)
+|+.+||++.++|+
T Consensus 76 ~k~~~kk~~~~~~~ 89 (93)
T PF12936_consen 76 KKKYKKKKRLREWK 89 (93)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444455554
No 83
>PF12589 WBS_methylT: Methyltransferase involved in Williams-Beuren syndrome; InterPro: IPR022238 This domain family is found in eukaryotes, and is typically between 72 and 83 amino acids in length. The family is found in association with PF08241 from PFAM. This family is made up of S-adenosylmethionine-dependent methyltransferases []. The proteins are deleted in Williams-Beuren syndrome (WBS), a complex developmental disorder with multisystemic manifestations including supravalvular aortic stenosis (SVAS) and a specific cognitive phenotype [].
Probab=44.94 E-value=7.4 Score=27.67 Aligned_cols=18 Identities=56% Similarity=0.713 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy1930 12 KKKKKKKKKKKKKKKKKK 29 (195)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~ 29 (195)
++++++++|+.++.|+|.
T Consensus 42 ~~~~~~~~k~~~kskeWI 59 (87)
T PF12589_consen 42 RRKRRKKKKKKKKSKEWI 59 (87)
T ss_pred HHHhccccCCCCccHHHH
Confidence 444444455555667774
No 84
>KOG3045|consensus
Probab=44.90 E-value=15 Score=31.94 Aligned_cols=11 Identities=27% Similarity=0.310 Sum_probs=4.8
Q ss_pred hhhHHHHHHHH
Q psy1930 116 MSGILAITFCG 126 (195)
Q Consensus 116 ~SGiLAvvv~G 126 (195)
.+++||=+-||
T Consensus 180 ~~~vIaD~GCG 190 (325)
T KOG3045|consen 180 KNIVIADFGCG 190 (325)
T ss_pred CceEEEecccc
Confidence 34444444444
No 85
>PRK01844 hypothetical protein; Provisional
Probab=44.88 E-value=32 Score=23.70 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=16.7
Q ss_pred hhcchhHHHHHHHHHHH--HHhhccccc
Q psy1930 68 AVGGTVIGVIWGFLTGF--VTRFTNEVR 93 (195)
Q Consensus 68 ~~gGiliG~~~G~l~~~--llk~~~~~~ 93 (195)
.+.++++|++.|+..+. ..+.+.++|
T Consensus 10 ~I~~li~G~~~Gff~ark~~~k~lk~NP 37 (72)
T PRK01844 10 GVVALVAGVALGFFIARKYMMNYLQKNP 37 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 34577788888877763 446666553
No 86
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=44.03 E-value=2.8e+02 Score=27.02 Aligned_cols=18 Identities=33% Similarity=0.401 Sum_probs=12.3
Q ss_pred hcchhHHHHHHHHHHHHH
Q psy1930 69 VGGTVIGVIWGFLTGFVT 86 (195)
Q Consensus 69 ~gGiliG~~~G~l~~~ll 86 (195)
+.|.++|.+.|++...++
T Consensus 69 i~GTliGa~~~l~l~~~f 86 (652)
T PRK10631 69 IIGTFIGCIAALVIIIAT 86 (652)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456777777777776654
No 87
>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake. Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane
Probab=43.79 E-value=2.1e+02 Score=24.67 Aligned_cols=27 Identities=19% Similarity=0.126 Sum_probs=14.0
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHhhcc
Q psy1930 64 FFVVAVGGTVIGVIWGFLTGFVTRFTN 90 (195)
Q Consensus 64 f~~~~~gGiliG~~~G~l~~~llk~~~ 90 (195)
.+.....|+++|.++|++......+++
T Consensus 168 ~~~g~~~G~~~a~~~~~~~~~~~~~i~ 194 (306)
T PF03239_consen 168 ILLGAILGIAAAVVLGWLLYRGLIRIS 194 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344445555555555555555444443
No 88
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=43.56 E-value=18 Score=27.16 Aligned_cols=20 Identities=25% Similarity=0.281 Sum_probs=15.5
Q ss_pred hhcchhHHHHHHHHHHHHHh
Q psy1930 68 AVGGTVIGVIWGFLTGFVTR 87 (195)
Q Consensus 68 ~~gGiliG~~~G~l~~~llk 87 (195)
++.|+++|.++|.++++++.
T Consensus 7 ~l~G~liGgiiGa~aaLL~A 26 (115)
T COG4980 7 FLFGILIGGIIGAAAALLFA 26 (115)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 45688888888888888774
No 89
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=43.55 E-value=59 Score=28.10 Aligned_cols=50 Identities=14% Similarity=0.071 Sum_probs=33.4
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHhhccccccHHH----HHHHHHHHHHHHHHhh
Q psy1930 64 FFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEP----IFIFVMAYLAYLTAEI 113 (195)
Q Consensus 64 f~~~~~gGiliG~~~G~l~~~llk~~~~~~~~~~----~l~la~a~~~y~lae~ 113 (195)
++.....|++++.++|++..+...+++-.+.... ++.++..++++.+-|.
T Consensus 153 ~~gg~~~Gl~~~~~~g~li~~~~~~i~l~~FF~~t~~lL~llAagl~~~gv~~l 206 (283)
T TIGR00145 153 YIGPAVAGLIVAVVVGVLLYRGGSRLSLKIFFILSSSLLLFIAAGLLGGGNHRF 206 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445778999999999999999988885553332 3334444555554443
No 90
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=43.33 E-value=74 Score=30.28 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=40.2
Q ss_pred HHHHHHhhcchhHHHHHHHHH---------HHHHhhccccccHHHHHHHHHHHHHHHHHhh-------h-------hhhh
Q psy1930 62 ASFFVVAVGGTVIGVIWGFLT---------GFVTRFTNEVRVIEPIFIFVMAYLAYLTAEI-------F-------HMSG 118 (195)
Q Consensus 62 ~~f~~~~~gGiliG~~~G~l~---------~~llk~~~~~~~~~~~l~la~a~~~y~lae~-------l-------~~SG 118 (195)
.+++..+.||+++++.+.+.. .+.+..+........++.+..+|.+|.++|- + ..||
T Consensus 236 ~mlP~vv~gGil~ai~~~~g~~~~~~~~~~~~~~~~~gg~~~~~lmvpvla~yia~sia~rpglapg~i~g~~a~~~~~G 315 (563)
T PRK10712 236 YMLPMVVAGGLCIALSFAFGIEAFKEPGTLAAALMQIGGGSAFALMVPVLAGYIAFSIADRPGLTPGLIGGMLAVSTGSG 315 (563)
T ss_pred HHHHHHHHhHHHHHHHHHhCccccCCccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHhcCCch
Confidence 445666667777666554321 0111111110123445566677777766652 1 3599
Q ss_pred HHHHHHHHHhhhccc
Q psy1930 119 ILAITFCGITMKNYV 133 (195)
Q Consensus 119 iLAvvv~Gl~l~~~~ 133 (195)
++...++|++.++..
T Consensus 316 FlG~Ilag~lagyv~ 330 (563)
T PRK10712 316 FIGGIIAGFLAGYVA 330 (563)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998888643
No 91
>COG1863 MnhE Multisubunit Na+/H+ antiporter, MnhE subunit [Inorganic ion transport and metabolism]
Probab=43.30 E-value=1.6e+02 Score=23.18 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=30.0
Q ss_pred cchhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhhhh
Q psy1930 70 GGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFHMS 117 (195)
Q Consensus 70 gGiliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~y~lae~l~~S 117 (195)
+..++|+++|.+..+++++.........-..-.+-|..|++-|..-.|
T Consensus 25 ~~~i~G~ivg~iv~~~~~~~~~~~~~~~r~~~~i~~~~~~~~ei~~an 72 (158)
T COG1863 25 ANLILGFIVGAIVLLLLRRFLPARLYPRRLLRAIKLILVFLKELIKAN 72 (158)
T ss_pred HHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888887765322333344445555557776665444
No 92
>PRK11778 putative inner membrane peptidase; Provisional
Probab=43.17 E-value=18 Score=31.96 Aligned_cols=9 Identities=44% Similarity=0.711 Sum_probs=5.3
Q ss_pred hhcchhHHH
Q psy1930 68 AVGGTVIGV 76 (195)
Q Consensus 68 ~~gGiliG~ 76 (195)
..||.+.|.
T Consensus 132 SpGG~v~~s 140 (330)
T PRK11778 132 SPGGVVHGY 140 (330)
T ss_pred CCCCchhHH
Confidence 456666664
No 93
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=43.08 E-value=1.7e+02 Score=28.09 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHhh
Q psy1930 99 FIFVMAYLAYLTAEIFHMSGILAITFCGITM 129 (195)
Q Consensus 99 l~la~a~~~y~lae~l~~SGiLAvvv~Gl~l 129 (195)
+.+.-.+.+|..|..++.|.+++.+++++.+
T Consensus 151 f~fLPiliays~Ak~~~~np~~g~~ig~~l~ 181 (610)
T TIGR01995 151 FYFLPILLAITAAKRFKVNPYLAAAIGAALL 181 (610)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 3344444555555556666666555555443
No 94
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=42.61 E-value=67 Score=31.15 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=17.0
Q ss_pred HHHhhhhhhhHHHHHHHHHhhh
Q psy1930 109 LTAEIFHMSGILAITFCGITMK 130 (195)
Q Consensus 109 ~lae~l~~SGiLAvvv~Gl~l~ 130 (195)
.+++.+..+|.+.+++.|+.=+
T Consensus 161 ~lg~~i~~~g~~G~fiyG~leR 182 (648)
T PRK10255 161 AGGEWIVSAGALGSGIFGFINR 182 (648)
T ss_pred HHHHHHHcCCchHHHHHHHHHH
Confidence 4456677789999999998654
No 95
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=41.94 E-value=97 Score=29.82 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=17.0
Q ss_pred hhcchhHHHHHHHHHHHHHhhccc
Q psy1930 68 AVGGTVIGVIWGFLTGFVTRFTNE 91 (195)
Q Consensus 68 ~~gGiliG~~~G~l~~~llk~~~~ 91 (195)
++++++.|++.||+..|+-|+++.
T Consensus 381 flg~Ii~~~l~gyv~~~l~k~ip~ 404 (631)
T PRK09765 381 FLGAVVGGLIAGYLMRWVKNHLRL 404 (631)
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCC
Confidence 456677777777777777777653
No 96
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=41.75 E-value=64 Score=31.01 Aligned_cols=36 Identities=25% Similarity=0.236 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHhhh--------------hhhhHHHHHHHHHhhhcc
Q psy1930 97 PIFIFVMAYLAYLTAEIF--------------HMSGILAITFCGITMKNY 132 (195)
Q Consensus 97 ~~l~la~a~~~y~lae~l--------------~~SGiLAvvv~Gl~l~~~ 132 (195)
.++.+..+|.+|.+|+-. ..||++..+++|++.+..
T Consensus 345 ~~~pvl~a~iA~sia~k~g~~pg~~~g~~a~~~~sgflg~Ii~~~l~gyv 394 (631)
T PRK09765 345 LMVPVLAAYTAYSLADKPALAPGFAAGLAANMIGSGFLGAVVGGLIAGYL 394 (631)
T ss_pred HHHHHHHHHHHHHHhcccCcCchhHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 455677788888777631 147888888888888753
No 97
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=40.98 E-value=1.2e+02 Score=27.19 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=28.9
Q ss_pred chhHHHHHHHHHHHHHhhc--ccc---ccHHHHHHHHHHHHHHHHHhhhhhhh
Q psy1930 71 GTVIGVIWGFLTGFVTRFT--NEV---RVIEPIFIFVMAYLAYLTAEIFHMSG 118 (195)
Q Consensus 71 GiliG~~~G~l~~~llk~~--~~~---~~~~~~l~la~a~~~y~lae~l~~SG 118 (195)
.+++|+++|++..+++++. ... ...-.-+.-.+.|+.|++-|.+-.|=
T Consensus 191 ~l~~G~v~~~~v~~~~~~~~~~~~~~~~~~~~r~~~~~~y~~~~l~eiv~Ani 243 (357)
T PRK12652 191 DLLTGAVTALIVAVLLAHVTFSRPPSLRRTPLRVLRFLLYVPYLLWEIVKANV 243 (357)
T ss_pred HHHHHHHHHHHHHHHhcccccCCccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3788999998888888763 221 11111233456667777777665543
No 98
>PRK12596 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=40.94 E-value=53 Score=26.09 Aligned_cols=47 Identities=11% Similarity=0.100 Sum_probs=27.8
Q ss_pred cchhHHHHHHHHHHHHHhhcccc-ccHHHHHHHHHHHHHHHHHhhhhhh
Q psy1930 70 GGTVIGVIWGFLTGFVTRFTNEV-RVIEPIFIFVMAYLAYLTAEIFHMS 117 (195)
Q Consensus 70 gGiliG~~~G~l~~~llk~~~~~-~~~~~~l~la~a~~~y~lae~l~~S 117 (195)
+.+++|+++|.+..++++..... ..... ..-.+.|..+++-|.+-.|
T Consensus 27 ~~ll~G~~v~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~eiv~an 74 (171)
T PRK12596 27 AQFILGLVIAFGACRVMMALEPQKNHIRS-PRMMIWLLYAASIDVLRSN 74 (171)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCccccc-HHHHHHHHHHHHHHHHHHH
Confidence 36677888888888877655421 12222 2233666677777765444
No 99
>KOG4520|consensus
Probab=40.90 E-value=12 Score=30.78 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy1930 7 KERENKKKKKKKKKKKKKKKK 27 (195)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~ 27 (195)
+|+++||+.+-+++++|+.+|
T Consensus 174 ~Ek~kkk~R~~~r~~~kr~kE 194 (238)
T KOG4520|consen 174 VEKEKKKTRSNHRHGSKRRKE 194 (238)
T ss_pred HHHHHHhhhhhhccccccccc
Confidence 344444444444444444333
No 100
>COG3641 PfoR Predicted membrane protein, putative toxin regulator [General function prediction only]
Probab=40.70 E-value=1.9e+02 Score=25.74 Aligned_cols=66 Identities=20% Similarity=0.300 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHhhccccccHHHHHHHH-------HHHHHHHHHhhhhhhhHHHHHH
Q psy1930 59 SGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFV-------MAYLAYLTAEIFHMSGILAITF 124 (195)
Q Consensus 59 ~~~~~f~~~~~gGiliG~~~G~l~~~llk~~~~~~~~~~~l~la-------~a~~~y~lae~l~~SGiLAvvv 124 (195)
+...+++.....|+++|++--.+.+.++|.+.+++..|....+. -+.....++..+|.|+.....+
T Consensus 10 ~fm~~~l~~~~~giv~gLvp~ailG~ilk~i~~~~~~~~l~~vv~~~q~~m~~~IGvlva~~f~~~~l~~~s~ 82 (348)
T COG3641 10 QFMKKILNGALAGIVIGLVPNAILGLILKTIGDNTIFEFLYHVVVLIQFLMPAGIGVLVAYQFHANPLVLASV 82 (348)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 34455555556666666666666677777766554444333222 2223334555566666544433
No 101
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]
Probab=40.65 E-value=2.6e+02 Score=26.39 Aligned_cols=67 Identities=22% Similarity=0.293 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcc--ccccHHHHHHHHHHHHHHHHH----hhhhhhhHHH
Q psy1930 55 VDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTN--EVRVIEPIFIFVMAYLAYLTA----EIFHMSGILA 121 (195)
Q Consensus 55 ~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk~~~--~~~~~~~~l~la~a~~~y~la----e~l~~SGiLA 121 (195)
...++.+.+-+++.+++.++..++|...+|+..+.+ .....+..+++-++.=+|..+ +.+|-+|.++
T Consensus 52 ~~~~~~l~nTl~la~~~~~ls~~lG~~~A~l~~r~~fpGr~~l~~l~~lPl~iP~~V~a~~~~~l~G~~G~~~ 124 (540)
T COG1178 52 PYLWRVLANTLILAVLVTLLSVVLGIPLAWLLSRYDFPGRRLLRWLLALPLVIPPFVVALAWISLFGPSGPLA 124 (540)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhHHHHHHHHHHHHCCCcHHH
Confidence 346778888888899999999999999999987764 223455555555555445444 4567777655
No 102
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=40.65 E-value=49 Score=29.33 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=21.4
Q ss_pred cchhHHHHHHHHHHHHHhhccc---cccHHHHHHHHHHHHHHHHHh
Q psy1930 70 GGTVIGVIWGFLTGFVTRFTNE---VRVIEPIFIFVMAYLAYLTAE 112 (195)
Q Consensus 70 gGiliG~~~G~l~~~llk~~~~---~~~~~~~l~la~a~~~y~lae 112 (195)
.|+++|++++.+.+.-+..... ++.+.+++++.++|..|.++.
T Consensus 86 iGLiiGLlia~l~~~pL~~~~ip~~~~ii~vi~t~il~y~G~~~~~ 131 (356)
T COG4956 86 IGLIIGLLIAVLLSSPLFLLPIPFISTIIPVILTIILAYFGFQLAD 131 (356)
T ss_pred HHHHHHHHHHHHHhhHHhhCCccHHHhHHHHHHHHHHHHHhhHHhh
Confidence 3555555555554443322221 123455566666666666664
No 103
>KOG2533|consensus
Probab=40.54 E-value=3.1e+02 Score=25.57 Aligned_cols=122 Identities=10% Similarity=0.005 Sum_probs=59.9
Q ss_pred HHHHHHHhhcchhHHHHHHHHH-HHHHhhccccccHHHHHHHHHHHHHHH-HHhhh-hhhhHHHH-HHHHHhhhccccc-
Q psy1930 61 LASFFVVAVGGTVIGVIWGFLT-GFVTRFTNEVRVIEPIFIFVMAYLAYL-TAEIF-HMSGILAI-TFCGITMKNYVEA- 135 (195)
Q Consensus 61 ~~~f~~~~~gGiliG~~~G~l~-~~llk~~~~~~~~~~~l~la~a~~~y~-lae~l-~~SGiLAv-vv~Gl~l~~~~~~- 135 (195)
-.+.+-.+.....+|+++|-.- .++..+.+- ...+....+...++. ++..+ +..+++|+ +..|++-+..-|.
T Consensus 79 ~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~l---s~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~ 155 (495)
T KOG2533|consen 79 VGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPL---SKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGV 155 (495)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhHHHHHHhCCh---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHH
Confidence 3445555555667788777544 466777762 223333333333333 22223 47777775 6667766542211
Q ss_pred ------ccChhHHHHHHHHHHHHHHHHhHHHHHHHhhh--hc--ccchhhHHHHHHHHHH
Q psy1930 136 ------NISHKSHTTVKYAMKMLSSSSETIIFMFLGIS--TI--SDAHVWNTAFVILTIF 185 (195)
Q Consensus 136 ------~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~--v~--~~~~~~~~~~i~~~i~ 185 (195)
-..++++-....+|-.-+.+.+++-=++-... +. .....|.|.+++.+++
T Consensus 156 ~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i 215 (495)
T KOG2533|consen 156 VAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVI 215 (495)
T ss_pred HHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHH
Confidence 02344444455677555445554431111110 00 1135788887766544
No 104
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=40.22 E-value=97 Score=19.68 Aligned_cols=40 Identities=18% Similarity=0.419 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhh
Q psy1930 72 TVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIF 114 (195)
Q Consensus 72 iliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~y~lae~l 114 (195)
-.+|.++|.+.+.+.-.. .....++.+.++...|.+...+
T Consensus 10 ~iiG~~~G~ila~l~l~~---GF~~tl~i~~~~~iG~~iG~~~ 49 (51)
T PF10031_consen 10 KIIGGLIGLILALLILTF---GFWKTLFILLFAAIGYYIGKYL 49 (51)
T ss_pred hHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555544333 2355677777777777766543
No 105
>PRK00523 hypothetical protein; Provisional
Probab=39.43 E-value=46 Score=22.92 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=16.0
Q ss_pred hhcchhHHHHHHHHHHH--HHhhccccc
Q psy1930 68 AVGGTVIGVIWGFLTGF--VTRFTNEVR 93 (195)
Q Consensus 68 ~~gGiliG~~~G~l~~~--llk~~~~~~ 93 (195)
.+.++++|++.|+..+. ..+.+.++|
T Consensus 11 ~i~~li~G~~~Gffiark~~~k~l~~NP 38 (72)
T PRK00523 11 GIPLLIVGGIIGYFVSKKMFKKQIRENP 38 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 34457778888877763 446666443
No 106
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=38.63 E-value=94 Score=23.70 Aligned_cols=19 Identities=11% Similarity=0.205 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q psy1930 143 TTVKYAMKMLSSSSETIIF 161 (195)
Q Consensus 143 ~~~~~fw~~l~~l~~~~iF 161 (195)
..+--+...+.-++|..+|
T Consensus 113 vllgl~~al~vlvAEv~l~ 131 (142)
T PF11712_consen 113 VLLGLFGALLVLVAEVVLY 131 (142)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444
No 107
>PF07741 BRF1: Brf1-like TBP-binding domain; InterPro: IPR011665 The Vaccinia virus has an infection-induced host cell cycle control mechanism. p53 and Rb, which are associated with the is inactivated Rb, which are associated with the RNA polymerase III transcription factor B (TFIIIB) subunits, TBP and Brf1, are inactivated [, ]. TFIIB, Brf1, and Brf2 share related N-terminal zinc ribbon and core domains. TFIIB bridges RNA polymerase II (Pol II) with the promoter-bound pre-initiation complex, whereas Brf1 and Brf2 are involved in the recruitment of Pol III. Brf1 and Brf2 both have a C-terminal extension absent in TFIIB, but their C-terminal extensions are unrelated. In yeast Brf1, the C-terminal extension interacts with the TBP/TATA box complex and contributes to the recruitment of Bdp1 []. It is suggested that the structure of the TBP-DNA complex may be altered upon entry of Brf1 and Bdp1 into the complex. Entry of Brf1 and Bdp1 into the complex imposes a strict sequence preference for the downstream half of the TATA box []. This region covers both the Brf homology II and III regions []. ; GO: 0008270 zinc ion binding, 0045893 positive regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NGM_J.
Probab=38.57 E-value=9.3 Score=27.56 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHHHHHHhhc-cchhhHHHHHHHH
Q psy1930 20 KKKKKKKKKKK-KKKKRVLYHMFEA 43 (195)
Q Consensus 20 ~~~~~~~~~~N-D~~AIVLF~~~~~ 43 (195)
|+++|+++.+| ++.+-.-...+..
T Consensus 53 k~~rk~~~~~~~~~~a~ta~EA~~~ 77 (97)
T PF07741_consen 53 KKKRKRRKKKNQAPPAETAAEAARK 77 (97)
T ss_dssp -------------------------
T ss_pred ccccccccccCCCCCCCCHHHHHHH
Confidence 33344444455 4444433333333
No 108
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=38.50 E-value=81 Score=20.47 Aligned_cols=42 Identities=12% Similarity=0.187 Sum_probs=21.5
Q ss_pred cchhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHh
Q psy1930 70 GGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAE 112 (195)
Q Consensus 70 gGiliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~y~lae 112 (195)
-+.++|-++|++.+-+..-..+ +....++.+..+...+.+.+
T Consensus 9 Ws~il~~vvgyI~ssL~~~~~n-~~~~~Ii~vi~~i~~~~~~~ 50 (57)
T PF11151_consen 9 WSFILGEVVGYIGSSLTGVTYN-FTTAAIIAVIFGIIVANIIA 50 (57)
T ss_pred HHHHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666655333 33334444444444444433
No 109
>KOG2927|consensus
Probab=38.47 E-value=13 Score=33.26 Aligned_cols=8 Identities=38% Similarity=0.547 Sum_probs=3.1
Q ss_pred HHHhhccc
Q psy1930 25 KKKKKKKK 32 (195)
Q Consensus 25 ~~~~~ND~ 32 (195)
|+++=||.
T Consensus 298 ~k~k~~~~ 305 (372)
T KOG2927|consen 298 KKRKSSPE 305 (372)
T ss_pred HhhhcChh
Confidence 33333443
No 110
>PF03553 Na_H_antiporter: Na+/H+ antiporter family; InterPro: IPR018461 A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterised. It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane
Probab=37.99 E-value=2.4e+02 Score=23.66 Aligned_cols=83 Identities=16% Similarity=0.116 Sum_probs=46.5
Q ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhcccccccChh----HHHHHHHHHHHHHHH
Q psy1930 80 FLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHK----SHTTVKYAMKMLSSS 155 (195)
Q Consensus 80 ~l~~~llk~~~~~~~~~~~l~la~a~~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~----~~~~~~~fw~~l~~l 155 (195)
.+...+.++.......+....+...+.++..++..+.-.+..-.+.++.-.. +.+++ .-+..-.+.+.+.-+
T Consensus 185 ~~v~~~~~~~~~~~~l~~~~~l~~~~~~~~tgs~~~ti~i~~pi~~~l~~~~----g~~~~~~a~ai~~~~~~g~~l~P~ 260 (303)
T PF03553_consen 185 ALVNKLLKKIKSPRSLPAVTFLLSIIISFATGSSWGTIAIMGPIFKPLAEKM----GISPPLLAGAIESGATFGDPLSPW 260 (303)
T ss_pred HHHHHHHhhcCCccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh----cccHHHHHHHHHhhhhhcCCCCcc
Confidence 3444455555444566777777778888877766555555555544444332 23332 112234466666666
Q ss_pred HhHHHHHHHhh
Q psy1930 156 SETIIFMFLGI 166 (195)
Q Consensus 156 ~~~~iFvllG~ 166 (195)
..+.++..-+.
T Consensus 261 s~~~i~~~~~~ 271 (303)
T PF03553_consen 261 SDTTILSSSTL 271 (303)
T ss_pred hHHHHHHHHHH
Confidence 67777776666
No 111
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=37.88 E-value=6.6 Score=28.54 Aligned_cols=13 Identities=15% Similarity=0.381 Sum_probs=9.0
Q ss_pred HHHHHHHHhhccc
Q psy1930 20 KKKKKKKKKKKKK 32 (195)
Q Consensus 20 ~~~~~~~~~~ND~ 32 (195)
++.+.+||++||+
T Consensus 82 ~~~~s~~~k~~d~ 94 (96)
T PF07214_consen 82 SSSRSDREKKNDA 94 (96)
T ss_pred ccccchhhhcccC
Confidence 3344778888986
No 112
>TIGR00942 2a6301s05 Monovalent Cation (K+ or Na+):Proton Antiporter-3 (CPA3) subfamily.
Probab=37.70 E-value=65 Score=24.79 Aligned_cols=47 Identities=13% Similarity=0.270 Sum_probs=24.0
Q ss_pred chhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhhhh
Q psy1930 71 GTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFHMS 117 (195)
Q Consensus 71 GiliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~y~lae~l~~S 117 (195)
.+++|+++|.+..++.+........-.-..-.+.|..+++-|.+-.|
T Consensus 12 ~l~~G~vv~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~a~ 58 (144)
T TIGR00942 12 SIVLGLIFSTVLAWVTLNLQPARSRLHRWSRIIGFILRFLGDVIKAN 58 (144)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666655443211111112345667777777765444
No 113
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=37.60 E-value=1.5e+02 Score=21.17 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=17.3
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHHh
Q psy1930 62 ASFFVVAVGGTVIGVIWGFLTGFVTR 87 (195)
Q Consensus 62 ~~f~~~~~gGiliG~~~G~l~~~llk 87 (195)
.+-..+=+.|.++|.++|++...+..
T Consensus 33 ~~~~~~Ri~Gt~iG~~~~~~~~~~~~ 58 (128)
T PF13515_consen 33 VNRAIQRILGTLIGVVLGLLLLYLFP 58 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444455678888888888775553
No 114
>PF14158 YndJ: YndJ-like protein
Probab=37.59 E-value=2.7e+02 Score=23.99 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=18.1
Q ss_pred HhhhhhhhHHHHHHHHHhhhcc
Q psy1930 111 AEIFHMSGILAITFCGITMKNY 132 (195)
Q Consensus 111 ae~l~~SGiLAvvv~Gl~l~~~ 132 (195)
+-|+|.||+.+-.++|++-...
T Consensus 132 a~HFHyagF~~pi~aGLlgR~~ 153 (265)
T PF14158_consen 132 AVHFHYAGFAAPIVAGLLGRAI 153 (265)
T ss_pred HHHHHHHHHHHHHHHHHhhhhc
Confidence 4467999999999999987543
No 115
>KOG3113|consensus
Probab=37.57 E-value=24 Score=30.29 Aligned_cols=30 Identities=43% Similarity=0.491 Sum_probs=19.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy1930 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKK 32 (195)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ND~ 32 (195)
|+.|-|+++-++|-.||-||+||-+.+-|+
T Consensus 175 lk~rme~~kak~k~~Kk~Kk~KK~~~~~e~ 204 (293)
T KOG3113|consen 175 LKTRMEERKAKAKLEKKDKKPKKAESKSEP 204 (293)
T ss_pred HHHHHHHHHHHHHhhhcccchhhhhhcccc
Confidence 345666666666666666666777777676
No 116
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=37.38 E-value=2.4e+02 Score=23.39 Aligned_cols=54 Identities=11% Similarity=0.190 Sum_probs=30.6
Q ss_pred HhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhcc
Q psy1930 111 AEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTIS 170 (195)
Q Consensus 111 ae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~ 170 (195)
++-++.+.+++-..+|+.++.......+++ +..+.++.+.-.++....|++++.
T Consensus 11 ~~~l~lP~~v~~il~GillGp~~lg~i~~~------~~~~~l~~igl~~llF~~Gl~~d~ 64 (273)
T TIGR00932 11 SRRLGIPSVLGYLLAGVLIGPSGLGLISNV------EGVNHLAEFGVILLMFLIGLELDL 64 (273)
T ss_pred HHHhCCCHHHHHHHHHHHhCcccccCCCCh------HHHHHHHHHHHHHHHHHHHhCCCH
Confidence 444566677777777777775432212221 234455556666666677776654
No 117
>cd06580 TM_PBP1_transp_TpRbsC_like Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Probab=37.21 E-value=2.3e+02 Score=23.19 Aligned_cols=47 Identities=17% Similarity=0.302 Sum_probs=30.0
Q ss_pred HHHhhcchhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhh
Q psy1930 65 FVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIF 114 (195)
Q Consensus 65 ~~~~~gGiliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~y~lae~l 114 (195)
...+..+++++.++|++..++..+.+ ..+.+.++++.+..+.+...+
T Consensus 51 ~~ai~~a~~~~~~~g~~~g~~~~~~~---~~~~i~tl~~~~~~~g~~~~~ 97 (234)
T cd06580 51 PLGLLAAALAGALWALLPALLKAKLG---VNEVISGLMLNYIALGLTSYL 97 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHHHH
Confidence 34455566666667766666655443 235678888888777776654
No 118
>PF14402 7TM_transglut: 7 transmembrane helices usually fused to an inactive transglutaminase
Probab=37.00 E-value=2.6e+02 Score=24.65 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=19.3
Q ss_pred hhhhhhhHHHHHHHHHhhhccc
Q psy1930 112 EIFHMSGILAITFCGITMKNYV 133 (195)
Q Consensus 112 e~l~~SGiLAvvv~Gl~l~~~~ 133 (195)
=..|.-+++.++..|+.+..|-
T Consensus 162 L~~Gli~FllIV~~GL~iR~yL 183 (313)
T PF14402_consen 162 LLWGLILFLLIVAIGLLIRSYL 183 (313)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999874
No 119
>KOG2654|consensus
Probab=36.94 E-value=9.5 Score=34.72 Aligned_cols=11 Identities=45% Similarity=0.528 Sum_probs=5.1
Q ss_pred HHHHhhccchh
Q psy1930 24 KKKKKKKKKKK 34 (195)
Q Consensus 24 ~~~~~~ND~~A 34 (195)
+|+++||-++-
T Consensus 24 ~k~~~kp~~~~ 34 (461)
T KOG2654|consen 24 QKKKKKPSPVR 34 (461)
T ss_pred ccccCCCCCce
Confidence 33444555533
No 120
>COG4129 Predicted membrane protein [Function unknown]
Probab=36.20 E-value=3.1e+02 Score=24.30 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=13.9
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHh
Q psy1930 64 FFVVAVGGTVIGVIWGFLTGFVTR 87 (195)
Q Consensus 64 f~~~~~gGiliG~~~G~l~~~llk 87 (195)
..++-+.|.++|+++|.+...++-
T Consensus 56 ~~~~r~~g~~iG~~~a~l~~~l~g 79 (332)
T COG4129 56 RALQRLLGNALGAILAVLFFLLFG 79 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344445566666666666665553
No 121
>COG1299 FruA Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism]
Probab=35.49 E-value=77 Score=28.30 Aligned_cols=25 Identities=12% Similarity=0.494 Sum_probs=21.5
Q ss_pred HHhhcchhHHHHHHHHHHHHHhhcc
Q psy1930 66 VVAVGGTVIGVIWGFLTGFVTRFTN 90 (195)
Q Consensus 66 ~~~~gGiliG~~~G~l~~~llk~~~ 90 (195)
-.+.||++-|++.||+..|+.|+.+
T Consensus 95 aGFlG~ii~GflAGy~v~~l~k~~~ 119 (343)
T COG1299 95 AGFLGAIIAGFLAGYVVKWLKKYIE 119 (343)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhh
Confidence 3577889999999999999998887
No 122
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=35.37 E-value=33 Score=23.09 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=14.1
Q ss_pred hcchhHHHHHHHHHHH--HHhhcccc
Q psy1930 69 VGGTVIGVIWGFLTGF--VTRFTNEV 92 (195)
Q Consensus 69 ~gGiliG~~~G~l~~~--llk~~~~~ 92 (195)
+.++++|++.|+..+. +.+.+.++
T Consensus 4 ilali~G~~~Gff~ar~~~~k~l~~N 29 (64)
T PF03672_consen 4 ILALIVGAVIGFFIARKYMEKQLKEN 29 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4466777777776653 33555544
No 123
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=35.33 E-value=3.5e+02 Score=24.65 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhh
Q psy1930 144 TVKYAMKMLSSSSETIIFMFLGI 166 (195)
Q Consensus 144 ~~~~fw~~l~~l~~~~iFvllG~ 166 (195)
....+..++..+.-.++|+.+..
T Consensus 422 ~s~p~itt~~D~~g~~~~~~~a~ 444 (449)
T TIGR00400 422 MSGPLITTIADALTLIIYFNIAK 444 (449)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666665543
No 124
>KOG2002|consensus
Probab=35.20 E-value=6.2 Score=39.44 Aligned_cols=7 Identities=57% Similarity=0.838 Sum_probs=2.6
Q ss_pred HHHHHhh
Q psy1930 23 KKKKKKK 29 (195)
Q Consensus 23 ~~~~~~~ 29 (195)
||||+-+
T Consensus 927 krkr~~k 933 (1018)
T KOG2002|consen 927 KRKRKPK 933 (1018)
T ss_pred ccccCCc
Confidence 3333333
No 125
>KOG2236|consensus
Probab=35.15 E-value=21 Score=32.98 Aligned_cols=26 Identities=35% Similarity=0.425 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccch
Q psy1930 7 KERENKKKKKKKKKKKKKKKKKKKKKK 33 (195)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~ND~~ 33 (195)
||++-|+-|| ++|+++|-|...||.+
T Consensus 326 kEaeak~~kK-Qrk~r~~~k~~~nd~~ 351 (483)
T KOG2236|consen 326 KEAEAKQMKK-QRKRRSKVKFSDNDPV 351 (483)
T ss_pred HHHHHHHHHH-HhhcccccccccCCCC
Confidence 4444444433 3333333444455554
No 126
>PF13003 MRL1: Ribosomal protein L1; InterPro: IPR024663 This entry represents a ribosomal protein L1 domain found mainly in chordates.
Probab=35.01 E-value=10 Score=29.20 Aligned_cols=7 Identities=57% Similarity=0.729 Sum_probs=2.7
Q ss_pred HHHHHhh
Q psy1930 23 KKKKKKK 29 (195)
Q Consensus 23 ~~~~~~~ 29 (195)
++..|++
T Consensus 39 k~~~ek~ 45 (133)
T PF13003_consen 39 KKNDEKK 45 (133)
T ss_pred ccccccc
Confidence 3333344
No 127
>PRK12651 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=34.98 E-value=1.8e+02 Score=22.59 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=24.7
Q ss_pred chhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhhhh
Q psy1930 71 GTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFHMS 117 (195)
Q Consensus 71 GiliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~y~lae~l~~S 117 (195)
.+++|+++|.++.++.+.....+....-..-.+.|..+++.|.+-.|
T Consensus 26 ~l~~G~~v~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iv~a~ 72 (158)
T PRK12651 26 NFIIGFILGLFVLFLFRRLLPARFYLRRIYKLIKLVPIFLKELIKAN 72 (158)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666543211111112334567777777765433
No 128
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=34.67 E-value=3.3e+02 Score=24.14 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhh-----hhhhhHHHHHHHHHhhhcc
Q psy1930 97 PIFIFVMAYLAYLTAEI-----FHMSGILAITFCGITMKNY 132 (195)
Q Consensus 97 ~~l~la~a~~~y~lae~-----l~~SGiLAvvv~Gl~l~~~ 132 (195)
..+++.+++.+++++++ .+.|..+=....|+.++|.
T Consensus 7 ~~l~~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~ 47 (335)
T TIGR00698 7 LLQMALILLLAGAAGSIINLADPALSALFLAILLGMVAGNT 47 (335)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhcc
Confidence 45677888888888875 3788888889999999984
No 129
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion]
Probab=34.61 E-value=83 Score=27.56 Aligned_cols=17 Identities=6% Similarity=0.057 Sum_probs=12.5
Q ss_pred HhhccchhhHHHHHHHH
Q psy1930 27 KKKKKKKKRVLYHMFEA 43 (195)
Q Consensus 27 ~~~ND~~AIVLF~~~~~ 43 (195)
+-.|++..=.+-.+...
T Consensus 225 ~iin~si~qTlsRti~T 241 (305)
T COG0341 225 EIINTSINQTLTRTINT 241 (305)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888877777666554
No 130
>PRK10110 bifunctional PTS system maltose and glucose-specific transporter subunits IICB; Provisional
Probab=34.54 E-value=1.1e+02 Score=28.77 Aligned_cols=20 Identities=10% Similarity=0.238 Sum_probs=15.1
Q ss_pred HhhhhhhhHHHHHHHHHhhh
Q psy1930 111 AEIFHMSGILAITFCGITMK 130 (195)
Q Consensus 111 ae~l~~SGiLAvvv~Gl~l~ 130 (195)
...+..+|.++.++.|....
T Consensus 213 ~~~~~~~g~ig~~i~G~l~r 232 (530)
T PRK10110 213 GHMINSAGDFGPMLFGTGER 232 (530)
T ss_pred HHHHHhccHHHHHHHHHHHH
Confidence 44567789999999997654
No 131
>PRK09917 hypothetical protein; Provisional
Probab=34.28 E-value=2.2e+02 Score=22.31 Aligned_cols=38 Identities=0% Similarity=-0.199 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhcc
Q psy1930 95 IEPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNY 132 (195)
Q Consensus 95 ~~~~l~la~a~~~y~lae~l~~SGiLAvvv~Gl~l~~~ 132 (195)
....+.=++++..|.+....+.|-+.|.+++++.++-+
T Consensus 36 ~~~~i~G~vgw~vy~~~~~~~~~~~~asfiaa~~igl~ 73 (157)
T PRK09917 36 RWCALLGAIGHGSRMLMMTSGLNIEWSTFMASMLVGTI 73 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 44455556666667666556666777777777766643
No 132
>PLN02255 H(+) -translocating inorganic pyrophosphatase
Probab=34.21 E-value=2.4e+02 Score=27.94 Aligned_cols=36 Identities=22% Similarity=0.430 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhhh----hhhhHHHHHHHHHhhhcccc
Q psy1930 99 FIFVMAYLAYLTAEIF----HMSGILAITFCGITMKNYVE 134 (195)
Q Consensus 99 l~la~a~~~y~lae~l----~~SGiLAvvv~Gl~l~~~~~ 134 (195)
+..+..+.+|.++.++ -.-|.|+.....+.+..|+|
T Consensus 464 ~I~~ai~~sy~l~glyGiaiAa~GMLst~g~~la~DayGP 503 (765)
T PLN02255 464 AIAVSIYVSFSLAAMYGIAVAALGMLSTIATGLAIDAYGP 503 (765)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhheeecccC
Confidence 3344456677777653 34567777777777777776
No 133
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=34.14 E-value=2.5e+02 Score=27.51 Aligned_cols=26 Identities=35% Similarity=0.554 Sum_probs=15.6
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHHh
Q psy1930 62 ASFFVVAVGGTVIGVIWGFLTGFVTR 87 (195)
Q Consensus 62 ~~f~~~~~gGiliG~~~G~l~~~llk 87 (195)
..+.+....|++.|+++++++-+...
T Consensus 327 ~~~~~~~~iGl~~g~lI~~~TeYyTs 352 (682)
T PF03030_consen 327 WGLFGCVLIGLVAGVLIGFITEYYTS 352 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34555566667777777766666543
No 134
>PRK08965 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=34.11 E-value=1.6e+02 Score=22.98 Aligned_cols=52 Identities=10% Similarity=0.096 Sum_probs=30.0
Q ss_pred chhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q psy1930 71 GTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFHMSGILAI 122 (195)
Q Consensus 71 GiliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~y~lae~l~~SGiLAv 122 (195)
.+++|+++|.+..+++.........-.-..-.+.|..|++-|.+-.|=-+|-
T Consensus 30 ~l~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~eiv~a~~~Va~ 81 (162)
T PRK08965 30 NLLLGLLLGLLIPLLLALLVPLEGRLRRPLALLRLLLVVLYDLVVSNIQVAW 81 (162)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778887777777664322111112234566777888887655544333
No 135
>TIGR01427 PTS_IIC_fructo PTS system, fructose subfamily, IIC component. This model represents the IIC component, or IIC region of a IIABC or IIBC polypeptide of a phosphotransferase system for carbohydrate transport. Members of this family belong to the fructose-specific subfamily of the broader family (pfam02378) of PTS IIC proteins. Members should be found as part of the same chain or in the same operon as fructose family IIA (TIGR00848) and IIB (TIGR00829) protein regions. A number of bacterial species have members in two different branches of this subfamily, suggesting some diversity in substrate specificity of its members.
Probab=33.67 E-value=1.7e+02 Score=25.99 Aligned_cols=22 Identities=18% Similarity=0.600 Sum_probs=17.6
Q ss_pred hcchhHHHHHHHHHHHHHhhcc
Q psy1930 69 VGGTVIGVIWGFLTGFVTRFTN 90 (195)
Q Consensus 69 ~gGiliG~~~G~l~~~llk~~~ 90 (195)
.||++.|++.||+..++-|+.+
T Consensus 110 lGgII~gilag~~~~~lek~ik 131 (346)
T TIGR01427 110 LGGIIAGFLAGYVVKGLQKYIK 131 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888877755
No 136
>cd03381 PAP2_glucose_6_phosphatase PAP2_like proteins, glucose-6-phosphatase subfamily. Glucose-6-phosphatase converts glucose-6-phosphate into free glucose and is active in the lumen of the endoplasmic reticulum, where it is bound to the membrane. The generation of free glucose is an important control point in metabolism, and stands at the end of gluconeogenesis and the release of glucose from glycogen. Deficiency of glucose-6-phosphatase leads to von Gierke's disease.
Probab=33.34 E-value=85 Score=26.36 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=31.5
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHhhcc---ccccHHHHHHHHHHHHHHHHHhhhhh
Q psy1930 61 LASFFVVAVGGTVIGVIWGFLTGFVTRFTN---EVRVIEPIFIFVMAYLAYLTAEIFHM 116 (195)
Q Consensus 61 ~~~f~~~~~gGiliG~~~G~l~~~llk~~~---~~~~~~~~l~la~a~~~y~lae~l~~ 116 (195)
...++-++++|.++|++++........... .....-..+....+.+.|.+-..+|.
T Consensus 129 gvHfpsDVlaG~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~y~~~~~~gv 187 (235)
T cd03381 129 AAHFPHQVIAGVISGIAVAETFSHIRYIYSASLKRYVLITFFLFGFALGFYLLLKWLGV 187 (235)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345667788888888888876665431111 11123334445566666666655543
No 137
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=33.02 E-value=37 Score=27.57 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=13.5
Q ss_pred HHhhcchhHHHHHHHHHHHHH
Q psy1930 66 VVAVGGTVIGVIWGFLTGFVT 86 (195)
Q Consensus 66 ~~~~gGiliG~~~G~l~~~ll 86 (195)
..+++++++|+++||+.....
T Consensus 4 i~~i~~~~vG~~~G~~~~~~~ 24 (201)
T PF12072_consen 4 IIAIVALIVGIGIGYLVRKKI 24 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777775544
No 138
>PF13003 MRL1: Ribosomal protein L1; InterPro: IPR024663 This entry represents a ribosomal protein L1 domain found mainly in chordates.
Probab=32.59 E-value=15 Score=28.30 Aligned_cols=15 Identities=47% Similarity=0.567 Sum_probs=7.1
Q ss_pred HHHHHHHHHHhhccc
Q psy1930 18 KKKKKKKKKKKKKKK 32 (195)
Q Consensus 18 ~~~~~~~~~~~~ND~ 32 (195)
.||.||..++++||-
T Consensus 29 ~kk~kk~~~~k~~~e 43 (133)
T PF13003_consen 29 AKKTKKGNKEKKNDE 43 (133)
T ss_pred hhhccchhhcccccc
Confidence 333344445555554
No 139
>TIGR01996 PTS-II-BC-sucr PTS system, sucrose-specific IIBC component. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).
Probab=32.53 E-value=2.2e+02 Score=26.17 Aligned_cols=95 Identities=14% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHh
Q psy1930 8 ERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTR 87 (195)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~ND~~AIVLF~~~~~~~~~g~~~~~~~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk 87 (195)
+++++..+|||++.-++ +...+.++. ..-++...+.|++.|+..-+-..-++.
T Consensus 87 ~~~~~~~~~~k~~~~q~------------~~~~ls~if---------------~Piip~l~aaGll~gl~~ll~~~~~~~ 139 (461)
T TIGR01996 87 TSEQKAEAAKKMNPFQR------------FARTLSDIF---------------VPIIPAIVATGLLMGLNGMLTAFGLFG 139 (461)
T ss_pred chhhhhhhhhccCHHHH------------HHHHHHHHH---------------HhHHHHHHHHHHHHHHHHHHHhccccc
Q ss_pred h---------ccccccHHHH----HHHHHHHHHHHHHhhhhhhhHHHHHHHHHhh
Q psy1930 88 F---------TNEVRVIEPI----FIFVMAYLAYLTAEIFHMSGILAITFCGITM 129 (195)
Q Consensus 88 ~---------~~~~~~~~~~----l~la~a~~~y~lae~l~~SGiLAvvv~Gl~l 129 (195)
. ..-+.....+ +...=.+.+|..|..++.|.+++.+++++++
T Consensus 140 ~~~~~~~~~~~~~~~il~~i~~a~f~fLPil~a~s~AKk~k~~~~l~~~ig~~l~ 194 (461)
T TIGR01996 140 LSGVSVAPIPEGLAEMINVFTSTAFAFLPILIGFSAAKRFGGNPYLGAVIGLIMV 194 (461)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH
No 140
>PF15459 RRP14: 60S ribosome biogenesis protein Rrp14
Probab=32.41 E-value=62 Score=21.64 Aligned_cols=6 Identities=50% Similarity=0.639 Sum_probs=2.3
Q ss_pred HHHHHh
Q psy1930 23 KKKKKK 28 (195)
Q Consensus 23 ~~~~~~ 28 (195)
+-||.+
T Consensus 55 ~aKraK 60 (64)
T PF15459_consen 55 KAKRAK 60 (64)
T ss_pred HHHHHc
Confidence 333433
No 141
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=32.36 E-value=2.5e+02 Score=27.38 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHH----Hhh----hhhhhHHHHHHHHHhhhcccc
Q psy1930 98 IFIFVMAYLAYLT----AEI----FHMSGILAITFCGITMKNYVE 134 (195)
Q Consensus 98 ~l~la~a~~~y~l----ae~----l~~SGiLAvvv~Gl~l~~~~~ 134 (195)
++..+..+.+|.+ +.. +-.-|.++....-+.+..|+|
T Consensus 364 l~i~~ai~~sy~l~~~~~GlyGia~Aa~GMLst~g~~la~DayGP 408 (666)
T PRK00733 364 LVIVAAILGAYLLGMAGAGLYGIALAAVGMLSTAGIIVAVDAYGP 408 (666)
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHhHHHHhhheeec
Confidence 3444555678888 543 344677777777777777765
No 142
>PF07907 YibE_F: YibE/F-like protein; InterPro: IPR012507 The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE (Q9CHC5 from SWISSPROT) and YibF (Q9CHC4 from SWISSPROT). Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.
Probab=31.98 E-value=3.1e+02 Score=23.07 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhhc
Q psy1930 145 VKYAMKMLSSSSETIIFMFLGISTI 169 (195)
Q Consensus 145 ~~~fw~~l~~l~~~~iFvllG~~v~ 169 (195)
.+-=-|.++.+.|+++|.++|-.++
T Consensus 171 ~~IGrDimGtm~NTLifay~g~sl~ 195 (244)
T PF07907_consen 171 MNIGRDIMGTMINTLIFAYIGSSLP 195 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678889999999999999874
No 143
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=31.56 E-value=2.2e+02 Score=22.74 Aligned_cols=45 Identities=13% Similarity=0.470 Sum_probs=22.9
Q ss_pred HHHHHHhhcchhHHHHHH-HHHHHHHhhccccccHHHHHHHHHHHHH
Q psy1930 62 ASFFVVAVGGTVIGVIWG-FLTGFVTRFTNEVRVIEPIFIFVMAYLA 107 (195)
Q Consensus 62 ~~f~~~~~gGiliG~~~G-~l~~~llk~~~~~~~~~~~l~la~a~~~ 107 (195)
.++.. +..|.++++..= ++...+.+..++.|..+......+.+.+
T Consensus 132 ~~~~i-v~~g~i~si~~m~~~~~~~~~~l~~~p~l~~~~~~~L~~ig 177 (183)
T PF03741_consen 132 DDFFI-VITGNIISILLMRFLSFLLAKLLERFPYLKYLAAAILGFIG 177 (183)
T ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 334445554443 3444455666776766665555544443
No 144
>PF09858 DUF2085: Predicted membrane protein (DUF2085); InterPro: IPR019206 This entry, found in various hypothetical prokaryotic proteins, has no known function.
Probab=30.51 E-value=2e+02 Score=20.49 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=23.8
Q ss_pred chhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhh
Q psy1930 71 GTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFH 115 (195)
Q Consensus 71 GiliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~y~lae~l~ 115 (195)
|+-+|+++|.+...+.+...........+.+.+|...=...+.++
T Consensus 25 Giy~G~~~~~~~~~~~r~~~~~~~~~~~~l~~lpm~iDg~~q~~~ 69 (93)
T PF09858_consen 25 GIYLGLLIGLLLFYLGRIRLPPLSIWLALLLLLPMAIDGFTQLFG 69 (93)
T ss_pred HHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHhce
Confidence 667777777666666553222233444444555555444444443
No 145
>TIGR02004 PTS-IIBC-malX PTS system, maltose and glucose-specific IIBC component. This model represents a family of PTS enzyme II fused B and C components including and most closely related to the MalX maltose and glucose-specific transporter of E. coli. A pair of paralogous genes from E. coli strain CFT073 score between trusted and noise and may have diverged sufficiently to have an altered substrate specificity.
Probab=30.42 E-value=1.3e+02 Score=28.35 Aligned_cols=60 Identities=18% Similarity=0.224 Sum_probs=33.5
Q ss_pred chhHHHHHHHHHHHHHhhcccc--c-------------cHHH----HHHHHHHHHHH-------HHHhhhhhhhHHHHHH
Q psy1930 71 GTVIGVIWGFLTGFVTRFTNEV--R-------------VIEP----IFIFVMAYLAY-------LTAEIFHMSGILAITF 124 (195)
Q Consensus 71 GiliG~~~G~l~~~llk~~~~~--~-------------~~~~----~l~la~a~~~y-------~lae~l~~SGiLAvvv 124 (195)
|++-|++.|++.+++.++.++. | .... .+.+.++++-. .+.+.+..+|.++.++
T Consensus 138 gV~ggIi~g~i~a~i~n~~~k~~lP~~L~ff~G~rfVPiit~li~~~l~~~~p~~wp~~~~~i~~~~~~i~~~g~~g~fi 217 (517)
T TIGR02004 138 GVLGAVIVGLIVYKLHNRFYTVQMPDALAFFGGARFVPIISALVLAVVGLVIPLVWPLFALMIMAIGQLIQRSGIFGPFL 217 (517)
T ss_pred chHHHHHHHHHHHHHHHHHccccCchHHHHccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 6677777777777777776642 1 1111 11222222222 2234457789999999
Q ss_pred HHHhhh
Q psy1930 125 CGITMK 130 (195)
Q Consensus 125 ~Gl~l~ 130 (195)
.|..-.
T Consensus 218 yG~l~r 223 (517)
T TIGR02004 218 FGSGER 223 (517)
T ss_pred HHHHHH
Confidence 996544
No 146
>PF09692 Arb1: Argonaute siRNA chaperone (ARC) complex subunit Arb1; InterPro: IPR018606 Arb1 is required for histone H3 Lys9 (H3-K9) methylation, heterochromatin, assembly and siRNA generation in fission yeast [].
Probab=30.13 E-value=5.5 Score=36.11 Aligned_cols=38 Identities=24% Similarity=0.368 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHHHHHHH
Q psy1930 74 IGVIWGFLTGFVTRFTN-EVRVIEPIFIFVMAYLAYLTA 111 (195)
Q Consensus 74 iG~~~G~l~~~llk~~~-~~~~~~~~l~la~a~~~y~la 111 (195)
-|++-|+++.++..... ....++....++-.|+.|.+-
T Consensus 125 ~~Va~gFLS~~~p~~~g~~~~~~~~a~~vI~NFL~YvL~ 163 (396)
T PF09692_consen 125 EGVAKGFLSSHLPRLTGESEEQMKLATDVIRNFLNYVLY 163 (396)
T ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHh
Confidence 36666666666666554 223455555666666666543
No 147
>PLN02220 delta-9 acyl-lipid desaturase
Probab=29.93 E-value=1e+02 Score=26.94 Aligned_cols=27 Identities=15% Similarity=0.107 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhhc-cchhhHH
Q psy1930 11 NKKKKKKKKKKKKKKKKKKK-KKKKRVL 37 (195)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~N-D~~AIVL 37 (195)
++++..+++|+-..-|+|.| |...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (299)
T PLN02220 11 SQSKAVRKEKRAFFFRKWTRLDVVRASA 38 (299)
T ss_pred CcccccccccchhhhhccceehhHHHHH
Confidence 33333334444444566655 4444433
No 148
>PF04211 MtrC: Tetrahydromethanopterin S-methyltransferase, subunit C ; InterPro: IPR005865 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=29.76 E-value=3.6e+02 Score=23.14 Aligned_cols=16 Identities=25% Similarity=0.198 Sum_probs=9.1
Q ss_pred hhhhHHHHHHHHHhhh
Q psy1930 115 HMSGILAITFCGITMK 130 (195)
Q Consensus 115 ~~SGiLAvvv~Gl~l~ 130 (195)
=.+|++|+.+.-=.|+
T Consensus 169 i~~G~IAl~Fi~~~mA 184 (262)
T PF04211_consen 169 INTGYIALLFIIGGMA 184 (262)
T ss_pred hccCHHHHHHHHHHHH
Confidence 4578888765433333
No 149
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=29.30 E-value=4.7e+02 Score=24.36 Aligned_cols=20 Identities=10% Similarity=-0.119 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhHHHHHHHh
Q psy1930 146 KYAMKMLSSSSETIIFMFLG 165 (195)
Q Consensus 146 ~~fw~~l~~l~~~~iFvllG 165 (195)
.++-+..+.+.+..++.+.|
T Consensus 439 ~r~GKs~gs~~~~~l~~~~~ 458 (491)
T PF03219_consen 439 SRLGKSGGSLIQQGLLSLFP 458 (491)
T ss_pred cchhhHHHHHHHHHHHHHhc
Confidence 34566666777777777664
No 150
>PRK11778 putative inner membrane peptidase; Provisional
Probab=29.19 E-value=46 Score=29.45 Aligned_cols=7 Identities=29% Similarity=0.316 Sum_probs=3.4
Q ss_pred HHHHHHH
Q psy1930 105 YLAYLTA 111 (195)
Q Consensus 105 ~~~y~la 111 (195)
-+.|++|
T Consensus 167 SggY~iA 173 (330)
T PRK11778 167 SGGYMMA 173 (330)
T ss_pred hHHHHHH
Confidence 4455444
No 151
>PRK15406 oligopeptide ABC transporter permease OppC; Provisional
Probab=29.15 E-value=2.5e+02 Score=24.24 Aligned_cols=18 Identities=33% Similarity=0.818 Sum_probs=9.6
Q ss_pred hhcchhHHHHHHHHHHHH
Q psy1930 68 AVGGTVIGVIWGFLTGFV 85 (195)
Q Consensus 68 ~~gGiliG~~~G~l~~~l 85 (195)
.+.+.++|..+|.+.++.
T Consensus 112 ~~l~~~iGi~lG~~ag~~ 129 (302)
T PRK15406 112 ALVAVVVGTLYGSLSGYL 129 (302)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334455566666655553
No 152
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.11 E-value=89 Score=21.42 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=14.7
Q ss_pred HhhcchhHHHHHHHHHHH--HHhhccccc
Q psy1930 67 VAVGGTVIGVIWGFLTGF--VTRFTNEVR 93 (195)
Q Consensus 67 ~~~gGiliG~~~G~l~~~--llk~~~~~~ 93 (195)
.++.++++|++.|++.+. ..+.+.++|
T Consensus 9 ~ivl~ll~G~~~G~fiark~~~k~lk~NP 37 (71)
T COG3763 9 LIVLALLAGLIGGFFIARKQMKKQLKDNP 37 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 344566667777766552 334555443
No 153
>COG3671 Predicted membrane protein [Function unknown]
Probab=29.07 E-value=2.6e+02 Score=21.24 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhh
Q psy1930 142 HTTVKYAMKMLSSSSETIIFMFLGIST 168 (195)
Q Consensus 142 ~~~~~~fw~~l~~l~~~~iFvllG~~v 168 (195)
+-..+.||-.+.+..-.+++..+|+-+
T Consensus 64 ~f~iRTFw~~vl~~iIg~Llt~lgiGv 90 (125)
T COG3671 64 EFLIRTFWLAVLWWIIGLLLTFLGIGV 90 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788999888888888888888744
No 154
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=28.87 E-value=2.1e+02 Score=27.99 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhhh----hhhhHHHHHHHHHhhhcccc
Q psy1930 98 IFIFVMAYLAYLTAEIF----HMSGILAITFCGITMKNYVE 134 (195)
Q Consensus 98 ~l~la~a~~~y~lae~l----~~SGiLAvvv~Gl~l~~~~~ 134 (195)
++..+..+.+|.++.++ -.-|.|+.....+.+..|+|
T Consensus 400 l~I~~~i~~sy~~~GlyGiaiAa~GMLst~g~~la~DayGP 440 (697)
T TIGR01104 400 FAIAASIIVSFSFAGMYGIAMAALGMLSTAGTGLAIDAYGP 440 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccC
Confidence 34445567778877643 34566777777777777775
No 155
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=28.80 E-value=2.6e+02 Score=21.21 Aligned_cols=19 Identities=26% Similarity=0.216 Sum_probs=12.5
Q ss_pred HHHHHHhHHHHHHHhhhhc
Q psy1930 151 MLSSSSETIIFMFLGISTI 169 (195)
Q Consensus 151 ~l~~l~~~~iFvllG~~v~ 169 (195)
.+..+.+...-.++|..+.
T Consensus 109 ~~~~~~~~~~~~~~G~~i~ 127 (154)
T PF09835_consen 109 LLESLWEFGLPFLLGSLIL 127 (154)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3356667777777777664
No 156
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=28.68 E-value=88 Score=21.59 Aligned_cols=18 Identities=44% Similarity=0.678 Sum_probs=8.9
Q ss_pred chhHHHHHHHHHHHHHHH
Q psy1930 3 LKRRKERENKKKKKKKKK 20 (195)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (195)
|.+.=|++++.+|+|-|+
T Consensus 44 LaK~ie~~ere~K~k~Kr 61 (74)
T PF15086_consen 44 LAKAIEKEEREKKKKAKR 61 (74)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444445555555555433
No 157
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=28.66 E-value=5.1e+02 Score=24.50 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=20.0
Q ss_pred cChhHHHHHHH--------HHHHHHHHHhHHHHHHHhhhh
Q psy1930 137 ISHKSHTTVKY--------AMKMLSSSSETIIFMFLGIST 168 (195)
Q Consensus 137 ~~~~~~~~~~~--------fw~~l~~l~~~~iFvllG~~v 168 (195)
++||.|..... +-...+.+.+..+|.+.+..-
T Consensus 425 ldpe~r~kgKAa~D~i~~k~GKSiGSli~~~~~~i~~~~~ 464 (509)
T COG3202 425 LDPEYRTKGKAAVDVIGGKLGKSIGSLIQSLLFIIFPTAD 464 (509)
T ss_pred CCHhHHhhccchhhhhhhcccccHHHHHHHHHHheecHHH
Confidence 45555555444 444556778888888887543
No 158
>KOG3817|consensus
Probab=28.65 E-value=3.1e+02 Score=24.97 Aligned_cols=14 Identities=0% Similarity=0.221 Sum_probs=10.0
Q ss_pred HhHHHHHHHhhhhc
Q psy1930 156 SETIIFMFLGISTI 169 (195)
Q Consensus 156 ~~~~iFvllG~~v~ 169 (195)
+-++++++.|.+++
T Consensus 262 li~lvl~Yfsvq~p 275 (452)
T KOG3817|consen 262 LIGLVLAYFSVQHP 275 (452)
T ss_pred HHHHHHHHHhcccH
Confidence 34577888888775
No 159
>KOG2223|consensus
Probab=28.60 E-value=74 Score=29.62 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=18.2
Q ss_pred ccHHHHHHHHHHHHHHHHHh-hhhhhhHHHH
Q psy1930 93 RVIEPIFIFVMAYLAYLTAE-IFHMSGILAI 122 (195)
Q Consensus 93 ~~~~~~l~la~a~~~y~lae-~l~~SGiLAv 122 (195)
|....+..+.-||.+|---- ++.+-.+||+
T Consensus 378 Py~d~L~~lL~AYt~yRpDvgYVqgmSFIaA 408 (586)
T KOG2223|consen 378 PYHDDLHSLLGAYTCYRPDVGYVQGMSFIAA 408 (586)
T ss_pred chHHHHHHHhhhheeecCccccccchHHHHH
Confidence 34567788999999884332 3444444443
No 160
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.93 E-value=1.1e+02 Score=19.85 Aligned_cols=17 Identities=18% Similarity=0.462 Sum_probs=7.7
Q ss_pred hhcchhHHHHHHHHHHH
Q psy1930 68 AVGGTVIGVIWGFLTGF 84 (195)
Q Consensus 68 ~~gGiliG~~~G~l~~~ 84 (195)
++++.++|+++|++..+
T Consensus 24 il~~f~~G~llg~l~~~ 40 (68)
T PF06305_consen 24 ILIAFLLGALLGWLLSL 40 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 161
>PF04557 tRNA_synt_1c_R2: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 ; InterPro: IPR007638 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a region found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This region is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004819 glutamine-tRNA ligase activity, 0005524 ATP binding, 0006425 glutaminyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=27.47 E-value=16 Score=25.73 Aligned_cols=8 Identities=50% Similarity=0.426 Sum_probs=0.7
Q ss_pred HHHHHHHH
Q psy1930 9 RENKKKKK 16 (195)
Q Consensus 9 ~~~~~~~~ 16 (195)
+...|++|
T Consensus 20 aD~~k~~K 27 (84)
T PF04557_consen 20 ADLVKKKK 27 (84)
T ss_dssp GG------
T ss_pred ccccCCCC
Confidence 33333333
No 162
>PRK09478 mglC beta-methylgalactoside transporter inner membrane component; Provisional
Probab=26.95 E-value=1.8e+02 Score=25.42 Aligned_cols=44 Identities=18% Similarity=0.291 Sum_probs=28.5
Q ss_pred HhhcchhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Q psy1930 67 VAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEI 113 (195)
Q Consensus 67 ~~~gGiliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~y~lae~ 113 (195)
.+..++++|.++|++..++..+.+.+ +.+.|+++.+..+.+...
T Consensus 108 ai~~a~~~g~l~G~~~g~l~~rl~~~---~~I~Tlg~~~i~~~l~~~ 151 (336)
T PRK09478 108 VILIVCAIGAVIGLINGLIIAYLNVT---PFIATLGTMIIVYGINSL 151 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC---hHHHHHHHHHHHHHHHHH
Confidence 44556666677777766666666543 347788887777766553
No 163
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=26.28 E-value=7.1e+02 Score=25.98 Aligned_cols=17 Identities=18% Similarity=0.104 Sum_probs=7.0
Q ss_pred ccHHHHHHHHHHHHHHH
Q psy1930 93 RVIEPIFIFVMAYLAYL 109 (195)
Q Consensus 93 ~~~~~~l~la~a~~~y~ 109 (195)
+.....++-.+-|+.|.
T Consensus 869 ~~~~~~i~~l~~y~I~~ 885 (1109)
T PRK10929 869 PGTGYAITTITKYLLML 885 (1109)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 33344444344444443
No 164
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=26.14 E-value=5.1e+02 Score=23.64 Aligned_cols=94 Identities=14% Similarity=0.307 Sum_probs=42.8
Q ss_pred chhHHHHHHHHHHHHHhhccc--cccHHHHHHHHHHHHHHHHHh------hhhhhhHHHHHHHHHh-hhcccccccChhH
Q psy1930 71 GTVIGVIWGFLTGFVTRFTNE--VRVIEPIFIFVMAYLAYLTAE------IFHMSGILAITFCGIT-MKNYVEANISHKS 141 (195)
Q Consensus 71 GiliG~~~G~l~~~llk~~~~--~~~~~~~l~la~a~~~y~lae------~l~~SGiLAvvv~Gl~-l~~~~~~~~~~~~ 141 (195)
|.++|.++|+++.++-....+ ++..-.+.++.+++.+=+.-. -.+..|.+..++.-++ ++.|. .++
T Consensus 69 GTl~aG~La~~~~~la~~~g~~~~~~~i~~~vFi~~~~atf~r~~P~~k~rydYg~~Vf~LTf~lV~vs~yr----~~~- 143 (406)
T PF11744_consen 69 GTLLAGILAFGVSWLASLSGDPGEPIVIGISVFIIGFIATFVRFIPKIKARYDYGGLVFILTFCLVAVSGYR----TDE- 143 (406)
T ss_pred HHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHhheeecCC----cch-
Confidence 566777777777777755544 122222222222222111111 1456666666665543 44332 122
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhhcc
Q psy1930 142 HTTVKYAMKMLSSSSETIIFMFLGISTIS 170 (195)
Q Consensus 142 ~~~~~~fw~~l~~l~~~~iFvllG~~v~~ 170 (195)
......|.....+.-..+-+++-+.++|
T Consensus 144 -~~~~A~~R~~~I~iGv~i~l~vsi~IfP 171 (406)
T PF11744_consen 144 -FLMLAVWRLLTIVIGVAICLLVSIFIFP 171 (406)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHheee
Confidence 1223344444444444444555555555
No 165
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=26.12 E-value=2.3e+02 Score=26.02 Aligned_cols=55 Identities=9% Similarity=0.158 Sum_probs=30.7
Q ss_pred HHHHHHH-HHHHHHhhccccccHHH--HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhc
Q psy1930 74 IGVIWGF-LTGFVTRFTNEVRVIEP--IFIFVMAYLAYLTAEIFHMSGILAITFCGITMKN 131 (195)
Q Consensus 74 iG~~~G~-l~~~llk~~~~~~~~~~--~l~la~a~~~y~lae~l~~SGiLAvvv~Gl~l~~ 131 (195)
.|..+|+ +..+++++++.+..+.. +....+.....++. +..++-+++.+|+.++-
T Consensus 283 ~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~---g~v~~~~l~~ig~F~si 340 (422)
T COG0738 283 VGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIG---GVVALYALFLIGLFNSI 340 (422)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc---ChHHHHHHHHHHHHhHH
Confidence 3455555 55788888875443211 12222222222222 46777888889998874
No 166
>PRK10404 hypothetical protein; Provisional
Probab=26.04 E-value=50 Score=24.08 Aligned_cols=13 Identities=31% Similarity=0.749 Sum_probs=7.0
Q ss_pred cchhHHHHHHHHH
Q psy1930 70 GGTVIGVIWGFLT 82 (195)
Q Consensus 70 gGiliG~~~G~l~ 82 (195)
+++.+|+++|++.
T Consensus 86 iaagvGlllG~Ll 98 (101)
T PRK10404 86 VGAAVGLVLGLLL 98 (101)
T ss_pred HHHHHHHHHHHHH
Confidence 3555566666553
No 167
>PF06374 NDUF_C2: NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2); InterPro: IPR009423 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of several NADH-ubiquinone oxidoreductase subunit b14.5b proteins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0006120 mitochondrial electron transport, NADH to ubiquinone, 0005743 mitochondrial inner membrane
Probab=26.02 E-value=2.2e+02 Score=21.46 Aligned_cols=36 Identities=14% Similarity=0.248 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhcccccc------HHHHHHHHHHHHHHHHHhh
Q psy1930 78 WGFLTGFVTRFTNEVRV------IEPIFIFVMAYLAYLTAEI 113 (195)
Q Consensus 78 ~G~l~~~llk~~~~~~~------~~~~l~la~a~~~y~lae~ 113 (195)
+|+.++.+.+..+..|. -+++++.+..++.|++...
T Consensus 34 ~G~~~~ll~N~~~rRP~~~sGihr~ll~~t~g~~~Gy~~~k~ 75 (117)
T PF06374_consen 34 LGFCTALLDNAINRRPPLKSGIHRQLLLATIGWFIGYYITKY 75 (117)
T ss_pred HHHHHHHHHHHHhcCCchhhccHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443332 3556666666777776654
No 168
>COG1289 Predicted membrane protein [Function unknown]
Probab=26.00 E-value=6e+02 Score=24.43 Aligned_cols=72 Identities=8% Similarity=-0.028 Sum_probs=36.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHH
Q psy1930 90 NEVRVIEPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFL 164 (195)
Q Consensus 90 ~~~~~~~~~l~la~a~~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvll 164 (195)
-.+|..-.+.+-...-+|..+++..+.-..-+.+++|.++.-..+...-+ +...-+-..+++..++++.+..
T Consensus 80 ~~~p~~f~~~~~~~~~l~~~~~~~~~~~~~~a~~la~yT~~~~~~~~~~~---~~~~~~~~a~~~~~~~~l~~~~ 151 (674)
T COG1289 80 AQEPWLFLLLLTLWLGLCTAIGSLYRTIASYAFVLAGYTALIIGPAPAIP---EPELLFDGAVWRVVEILLGILC 151 (674)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhccccccc---cHHHHHHHHHHHHHHHHHHHHH
Confidence 34455544444444455556666665556666666666665544110111 2233455555566666554443
No 169
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=25.99 E-value=3.2e+02 Score=22.04 Aligned_cols=23 Identities=13% Similarity=0.323 Sum_probs=12.8
Q ss_pred HHHhhcchhHHHHHHHHHHHHHh
Q psy1930 65 FVVAVGGTVIGVIWGFLTGFVTR 87 (195)
Q Consensus 65 ~~~~~gGiliG~~~G~l~~~llk 87 (195)
+..++.+++.|+++.+..-++.+
T Consensus 114 ~tli~~~i~~G~~~~~~~~~i~~ 136 (206)
T PF06570_consen 114 ITLILVSIVGGLVFYFIFKYIYP 136 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344566667666655545444
No 170
>PF08079 Ribosomal_L30_N: Ribosomal L30 N-terminal domain; InterPro: IPR012988 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This presumed domain is found at the N terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [].; PDB: 3IZR_e 3O5H_G 3O58_G 3IZS_e 4A1A_V 4A17_V 4A1E_V 4A1C_V.
Probab=25.94 E-value=1.3e+02 Score=20.33 Aligned_cols=9 Identities=56% Similarity=0.848 Sum_probs=4.7
Q ss_pred chhHHHHHH
Q psy1930 3 LKRRKEREN 11 (195)
Q Consensus 3 ~~~~~~~~~ 11 (195)
||+||..+.
T Consensus 3 LKKrK~~~~ 11 (71)
T PF08079_consen 3 LKKRKRNEK 11 (71)
T ss_dssp CHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 556655443
No 171
>PRK10913 dipeptide transporter; Provisional
Probab=25.65 E-value=3.1e+02 Score=23.56 Aligned_cols=18 Identities=39% Similarity=0.763 Sum_probs=10.1
Q ss_pred hhcchhHHHHHHHHHHHH
Q psy1930 68 AVGGTVIGVIWGFLTGFV 85 (195)
Q Consensus 68 ~~gGiliG~~~G~l~~~l 85 (195)
.+.+.++|..+|.+.++.
T Consensus 109 ~~l~~~iG~~lG~~ag~~ 126 (300)
T PRK10913 109 VVLSLVMGVILGLIAGYF 126 (300)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444555666666665554
No 172
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=25.35 E-value=3.9e+02 Score=22.02 Aligned_cols=26 Identities=0% Similarity=-0.236 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhh
Q psy1930 143 TTVKYAMKMLSSSSETIIFMFLGIST 168 (195)
Q Consensus 143 ~~~~~fw~~l~~l~~~~iFvllG~~v 168 (195)
.....+......+...+-=.+.|...
T Consensus 330 ~~~~g~~~~~~~~g~~~~~~~~g~l~ 355 (377)
T TIGR00890 330 AANYGFLYTAKAVAGIFGGLIASHAL 355 (377)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444554555555444444444433
No 173
>PRK08382 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=25.28 E-value=3.8e+02 Score=21.95 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=13.2
Q ss_pred chhHHHHHHHHHHHHHhhcc
Q psy1930 71 GTVIGVIWGFLTGFVTRFTN 90 (195)
Q Consensus 71 GiliG~~~G~l~~~llk~~~ 90 (195)
.+++|+++|++..++++...
T Consensus 57 ~l~lG~i~~~~v~~l~~~~~ 76 (201)
T PRK08382 57 GLILGALTTLIIASYMRDFL 76 (201)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 35667777777777766653
No 174
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=25.27 E-value=2.4e+02 Score=26.62 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=33.5
Q ss_pred HHHHhhccchhhHHHHHHHHHHhhcCcchhh-hhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhc
Q psy1930 24 KKKKKKKKKKKRVLYHMFEAYTEMGHNNVLY-VDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFT 89 (195)
Q Consensus 24 ~~~~~~ND~~AIVLF~~~~~~~~~g~~~~~~-~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk~~ 89 (195)
++.+|+.-....++|++|--+.+--+-+++. ..=...++-..-.++||..+|+.+|..++.-.-.+
T Consensus 34 ~~~~~~~k~~~~~iFSlf~im~ty~Gl~i~dsiaNtR~igv~~gGllgGP~Vg~~vGl~~GlhR~~m 100 (557)
T COG3275 34 VTARLPHKLALYIIFSLFCIMGTYFGLHIDDSIANTRAIGVVMGGLLGGPVVGIIVGLTAGLHRYSM 100 (557)
T ss_pred hhcCCcceeehHHHHHHHHHhhceeccchhhhHHhhHHHHHHhcccccCChhhhhhhhhhhhhhhhc
Confidence 4556775555666677665443321112221 00111333344456677778888887776554333
No 175
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=25.04 E-value=66 Score=20.82 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=18.3
Q ss_pred HHHHHHHHHH-HHhHHHHHHHhhhhc
Q psy1930 145 VKYAMKMLSS-SSETIIFMFLGISTI 169 (195)
Q Consensus 145 ~~~fw~~l~~-l~~~~iFvllG~~v~ 169 (195)
-++||-.+.. +..+++|+++|+.+.
T Consensus 19 ~NsF~fViik~vismimylilGi~L~ 44 (54)
T PF04835_consen 19 PNSFWFVIIKSVISMIMYLILGIALI 44 (54)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3577765544 478889999999875
No 176
>PRK11285 araH L-arabinose transporter permease protein; Provisional
Probab=24.91 E-value=2.2e+02 Score=24.95 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=22.4
Q ss_pred hhcchhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHH
Q psy1930 68 AVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTA 111 (195)
Q Consensus 68 ~~gGiliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~y~la 111 (195)
+..++++|.++|++..++..+.+. ...+.|+++.+..+.++
T Consensus 111 ll~al~~g~l~G~~~g~lv~~l~i---~~~I~TLg~~~i~~gl~ 151 (333)
T PRK11285 111 VAAGLLLGAAVGLVNGFVIARLKI---NALITTLATMQIVRGLA 151 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHH
Confidence 344555566666665555555543 23466666666655443
No 177
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=24.85 E-value=7.3e+02 Score=25.02 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=31.3
Q ss_pred HHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhhhh--h----HHHHHHHHHhhh
Q psy1930 79 GFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFHMS--G----ILAITFCGITMK 130 (195)
Q Consensus 79 G~l~~~llk~~~~~~~~~~~l~la~a~~~y~lae~l~~S--G----iLAvvv~Gl~l~ 130 (195)
+|+-.+++.+.+-++.....++-.+.|+...++-.++.| | -++++++++-+|
T Consensus 580 ~~L~~~vl~r~~~~~G~r~~I~t~~~Y~~~~i~~l~~lS~~Gi~lssL~~~~gALsvG 637 (835)
T COG3264 580 GWLEVRVLQRLDLDAGTRYSITTLLGYLLIAIGGLVGLSTLGIDLSSLQWLAGALSVG 637 (835)
T ss_pred HHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHhhhh
Confidence 344444555555456667777777777777777654444 2 266666666555
No 178
>COG4171 SapC ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=24.82 E-value=4e+02 Score=22.78 Aligned_cols=12 Identities=33% Similarity=0.332 Sum_probs=8.2
Q ss_pred HHHHHHhhhhcc
Q psy1930 159 IIFMFLGISTIS 170 (195)
Q Consensus 159 ~iFvllG~~v~~ 170 (195)
+=|+=+|.|.++
T Consensus 234 LgFl~LGAQ~Ps 245 (296)
T COG4171 234 LGFLDLGAQLPS 245 (296)
T ss_pred hhhhhccCCCCC
Confidence 457777887754
No 179
>COG3610 Uncharacterized conserved protein [Function unknown]
Probab=24.65 E-value=3.5e+02 Score=21.26 Aligned_cols=38 Identities=13% Similarity=0.146 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHhhhc
Q psy1930 94 VIEPIFIFVMAYLAYLTAEI-FHMSGILAITFCGITMKN 131 (195)
Q Consensus 94 ~~~~~l~la~a~~~y~lae~-l~~SGiLAvvv~Gl~l~~ 131 (195)
..-..+.-+++++.|++.-. +|.|...|.+++.+.++-
T Consensus 31 l~~~~~~g~~g~~v~~l~~~~~g~~~~~atfiaa~~vg~ 69 (156)
T COG3610 31 LPICGFLGALGWVVYYLLGKHFGFSIVVATFIAAFVVGC 69 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 45567778888888887764 888888888888777774
No 180
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=24.63 E-value=4.7e+02 Score=22.74 Aligned_cols=35 Identities=26% Similarity=0.473 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHhh----hhhhhHHHHHHHHHhhhc
Q psy1930 97 PIFIFVMAYLAYLTAEI----FHMSGILAITFCGITMKN 131 (195)
Q Consensus 97 ~~l~la~a~~~y~lae~----l~~SGiLAvvv~Gl~l~~ 131 (195)
..++++++..+|.+++. .+.+..+=....|+.++|
T Consensus 3 l~l~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n 41 (305)
T PF03601_consen 3 LLLCFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGN 41 (305)
T ss_pred HHHHHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhh
Confidence 46788889999999883 688998999999999998
No 181
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=24.02 E-value=5.6e+02 Score=23.38 Aligned_cols=31 Identities=13% Similarity=0.285 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHhhh
Q psy1930 100 IFVMAYLAYLTAEIFHMSGILAITFCGITMK 130 (195)
Q Consensus 100 ~la~a~~~y~lae~l~~SGiLAvvv~Gl~l~ 130 (195)
.+..|+..|..+-.++.+-.+...+.|+.++
T Consensus 85 ~l~~pff~~v~~pll~~n~~lg~iig~i~l~ 115 (412)
T PF01306_consen 85 LLFGPFFIYVFGPLLQSNFWLGAIIGGIYLG 115 (412)
T ss_dssp HTCHHHHHHTHHHHHHTT-HHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777788888888888888776
No 182
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=23.98 E-value=2.7e+02 Score=20.20 Aligned_cols=29 Identities=17% Similarity=0.024 Sum_probs=20.1
Q ss_pred HHHHhhcc-hhHHHHHHHHHHHHHhhcccc
Q psy1930 64 FFVVAVGG-TVIGVIWGFLTGFVTRFTNEV 92 (195)
Q Consensus 64 f~~~~~gG-iliG~~~G~l~~~llk~~~~~ 92 (195)
|.+.+..+ .++|+++|.+..+.++++...
T Consensus 36 ~~~Gi~~~~~l~g~i~g~~~~~~~r~lK~g 65 (101)
T PRK13707 36 IGWGITTSKYLFGIIAAVLVWFGIRKLKKG 65 (101)
T ss_pred HHHHHHHchHHHHHHHHHHHHHHHHHHHcC
Confidence 44443333 677888888888888887643
No 183
>PRK08383 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=23.73 E-value=3.4e+02 Score=21.52 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=15.1
Q ss_pred cchhHHHHHHHHHHHHHhhcc
Q psy1930 70 GGTVIGVIWGFLTGFVTRFTN 90 (195)
Q Consensus 70 gGiliG~~~G~l~~~llk~~~ 90 (195)
+.+++|+++|++..++++...
T Consensus 29 ~~l~~Gll~~~~v~~l~~~~~ 49 (168)
T PRK08383 29 EELIAGLIFAAIVGYATRNII 49 (168)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 356777777777778777764
No 184
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=23.54 E-value=1.2e+02 Score=23.87 Aligned_cols=44 Identities=11% Similarity=0.061 Sum_probs=21.8
Q ss_pred HHhhcchhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHH
Q psy1930 66 VVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTA 111 (195)
Q Consensus 66 ~~~~gGiliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~y~la 111 (195)
+..+.-.++|+.+-.+.+++..+-.- .+-..++++..+++|.++
T Consensus 67 ~~~GiP~~lG~~~f~~~y~l~~~~~~--dvP~~~~~~~S~~~Fg~g 110 (153)
T PF11947_consen 67 VFVGIPTALGVAVFVVFYYLKSRQIV--DVPPWAVLLVSLVFFGLG 110 (153)
T ss_pred HHhchHHHHHHHHHHHHHHHHhcccc--ccCchHHHHHHHHHHHHH
Confidence 33334445555555555555544321 133455666666666554
No 185
>PHA00727 hypothetical protein
Probab=23.25 E-value=77 Score=26.27 Aligned_cols=26 Identities=46% Similarity=0.335 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHH-----HHHHHhhc
Q psy1930 5 RRKERENKKKKKKKKKKK-----KKKKKKKK 30 (195)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~-----~~~~~~~N 30 (195)
|+-..|--|||||.||-| |--|||.|
T Consensus 60 ~qlkael~kkkkk~kkekvdv~vkv~kkwin 90 (278)
T PHA00727 60 EQLKAELSKKKKKFKKEKVDVRVKVVKKWIN 90 (278)
T ss_pred HHHHHHHHHHHHHhhhhhcceeeehhHHHHh
No 186
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=23.20 E-value=1.7e+02 Score=22.04 Aligned_cols=55 Identities=18% Similarity=0.196 Sum_probs=28.4
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhcccc
Q psy1930 62 ASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVE 134 (195)
Q Consensus 62 ~~f~~~~~gGiliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~y~lae~l~~SGiLAvvv~Gl~l~~~~~ 134 (195)
.++....+.|.++|+++|...+++.-+.. .-+.. .-...++.++++|-.++.+.+
T Consensus 24 ~El~~~a~~~~~~g~~~gl~la~~~g~~a----~~pt~--------------~ll~~~~~v~~gg~~l~rlKR 78 (121)
T PF11990_consen 24 DELGLAAGVGFVAGLVVGLPLALLTGWWA----MIPTG--------------ALLGPILGVFVGGKLLARLKR 78 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH--------------HHHHHHHHHHHhHHHHHHHHc
Confidence 33445555566666666666555532110 00111 123455667777777777654
No 187
>PRK10132 hypothetical protein; Provisional
Probab=23.03 E-value=66 Score=23.76 Aligned_cols=13 Identities=23% Similarity=0.491 Sum_probs=7.3
Q ss_pred cchhHHHHHHHHH
Q psy1930 70 GGTVIGVIWGFLT 82 (195)
Q Consensus 70 gGiliG~~~G~l~ 82 (195)
.++.+|+++|++.
T Consensus 92 iaagvG~llG~Ll 104 (108)
T PRK10132 92 TAAAVGIFIGALL 104 (108)
T ss_pred HHHHHHHHHHHHH
Confidence 3555666666553
No 188
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=22.97 E-value=2.3e+02 Score=25.41 Aligned_cols=68 Identities=18% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHhhcchhHHHHHHH------------HHHHHHhhccccccHHHHHHHHHHHHHHHHHhhh--------------hh
Q psy1930 63 SFFVVAVGGTVIGVIWGF------------LTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIF--------------HM 116 (195)
Q Consensus 63 ~f~~~~~gGiliG~~~G~------------l~~~llk~~~~~~~~~~~l~la~a~~~y~lae~l--------------~~ 116 (195)
.++..+.||+++++..-+ -....+..+.. ......+.+..+|.+|.+++-- ..
T Consensus 22 MlP~VvagGil~ai~~~~~g~~~~~~~~~~~~~~~l~~iG~-~~f~lmvpvlaayIa~SIa~kpglapg~i~G~~a~~~~ 100 (359)
T PRK10478 22 MIPFVVAGGILLAVSVMLYGKGAVPDAVADPNLKKLFDIGV-AGLTLMVPFLAAYIGYSIADRSALAPCAIGAWVGNSFG 100 (359)
T ss_pred hHhHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHhcCC
Q ss_pred hhHHHHHHHHHhhhc
Q psy1930 117 SGILAITFCGITMKN 131 (195)
Q Consensus 117 SGiLAvvv~Gl~l~~ 131 (195)
||++..++.|+.-+.
T Consensus 101 ~GFlGaii~G~laGy 115 (359)
T PRK10478 101 AGFFGALIAGIIGGI 115 (359)
T ss_pred cchHHHHHHHHHHHH
No 189
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=22.86 E-value=5.6e+02 Score=25.15 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=15.2
Q ss_pred hcchhHHHHHHHHHHH-HHhhcc
Q psy1930 69 VGGTVIGVIWGFLTGF-VTRFTN 90 (195)
Q Consensus 69 ~gGiliG~~~G~l~~~-llk~~~ 90 (195)
++|.++|.++|++... +.-+..
T Consensus 402 iiGTliGallA~ll~v~l~P~l~ 424 (683)
T PRK11427 402 FGGAFCGAILALLFTLLVMPWLD 424 (683)
T ss_pred HHHHHHHHHHHHHHHHHhccccc
Confidence 6688888888888874 443333
No 190
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=22.84 E-value=3.8e+02 Score=23.40 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=22.1
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHhhc
Q psy1930 60 GLASFFVVAVGGTVIGVIWGFLTGFVTRFT 89 (195)
Q Consensus 60 ~~~~f~~~~~gGiliG~~~G~l~~~llk~~ 89 (195)
.+..++...+.+.++|.+++++..+++++.
T Consensus 118 ~~~~I~~~wv~sPlia~~~a~~l~~~~~~~ 147 (326)
T PF01384_consen 118 GLLKIVLSWVISPLIAFILAYILYRLIRRI 147 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677778888888888888777654
No 191
>PF04930 FUN14: FUN14 family; InterPro: IPR007014 This is a family of short proteins found in eukaryotes and some archaea. Although the function of these proteins is not known they may contain transmembrane helices.
Probab=22.76 E-value=1.8e+02 Score=20.78 Aligned_cols=17 Identities=24% Similarity=0.561 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhhcc
Q psy1930 74 IGVIWGFLTGFVTRFTN 90 (195)
Q Consensus 74 iG~~~G~l~~~llk~~~ 90 (195)
+|.++|+++.+..++..
T Consensus 4 ~G~~~G~~~G~~~kK~~ 20 (100)
T PF04930_consen 4 IGSVSGLCAGYAIKKVS 20 (100)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 34445555555554443
No 192
>TIGR01998 PTS-II-BC-nag PTS system, N-acetylglucosamine-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes.
Probab=22.72 E-value=2e+02 Score=26.74 Aligned_cols=18 Identities=17% Similarity=0.171 Sum_probs=13.6
Q ss_pred hhhhhhHHHHHHHHHhhh
Q psy1930 113 IFHMSGILAITFCGITMK 130 (195)
Q Consensus 113 ~l~~SGiLAvvv~Gl~l~ 130 (195)
.+..+|.++.++.|..-.
T Consensus 182 ~i~~~g~~g~~iyG~l~r 199 (476)
T TIGR01998 182 SISGLGALGAGIYGFLNR 199 (476)
T ss_pred HHHhcchHHHHHHHHHHH
Confidence 346788999999887654
No 193
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=22.68 E-value=1.7e+02 Score=17.09 Aligned_cols=19 Identities=16% Similarity=0.494 Sum_probs=11.2
Q ss_pred hcchhHHHHHHHHHHHHHh
Q psy1930 69 VGGTVIGVIWGFLTGFVTR 87 (195)
Q Consensus 69 ~gGiliG~~~G~l~~~llk 87 (195)
..-++.|++.+.+.+|+.+
T Consensus 15 AAP~iagIi~s~iv~w~~~ 33 (35)
T PF13940_consen 15 AAPIIAGIIASLIVGWLRN 33 (35)
T ss_pred HhHHHHHHHHHHHHHHHHh
Confidence 3445566666666666654
No 194
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=22.65 E-value=4.9e+02 Score=22.29 Aligned_cols=22 Identities=14% Similarity=0.048 Sum_probs=16.7
Q ss_pred HHhhhhhhhHHHHHHHHHhhhc
Q psy1930 110 TAEIFHMSGILAITFCGITMKN 131 (195)
Q Consensus 110 lae~l~~SGiLAvvv~Gl~l~~ 131 (195)
++..-|..|.++=+.+|+..+.
T Consensus 249 Ian~AHlgGli~Gll~g~~~~~ 270 (276)
T PRK10907 249 IANAAHVAGLAVGLAMAFWDTR 270 (276)
T ss_pred cHHHHHHHHHHHHHHHHHHhhh
Confidence 5667788998888888777654
No 195
>KOG1767|consensus
Probab=22.60 E-value=24 Score=26.12 Aligned_cols=18 Identities=44% Similarity=0.329 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhccch
Q psy1930 16 KKKKKKKKKKKKKKKKKK 33 (195)
Q Consensus 16 ~~~~~~~~~~~~~~ND~~ 33 (195)
+|||--|.|.|++.|.++
T Consensus 24 ~KKKWskGk~kdkvnn~V 41 (110)
T KOG1767|consen 24 KKKKWSKGKVKDKVNNAV 41 (110)
T ss_pred cccccccchHHHHhhhhe
Confidence 444445667788888764
No 196
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=22.44 E-value=19 Score=31.37 Aligned_cols=65 Identities=11% Similarity=0.188 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhccc
Q psy1930 102 VMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISD 171 (195)
Q Consensus 102 a~a~~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~~ 171 (195)
+.+..+..+.+-++...++.-..+|+.++.......+++ ....+.++.+.=.++....|.+++..
T Consensus 6 ~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~-----~~~~~~l~~i~l~~llF~~G~~~d~~ 70 (380)
T PF00999_consen 6 LLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEPD-----NPSFELLAEIGLAFLLFEAGLELDIK 70 (380)
T ss_dssp -----------------------------------------------S-SSHHHHS--SSHHHHTTGGGG
T ss_pred ehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccch-----hhHHHHHHHHHHHHHHHHHHHhhccc
Confidence 334444445666777888888888888887654322222 34445556666666667778877653
No 197
>PLN00158 histone H2B; Provisional
Probab=22.17 E-value=97 Score=23.31 Aligned_cols=17 Identities=12% Similarity=0.254 Sum_probs=12.9
Q ss_pred ccchhhHHHHHHHHHHh
Q psy1930 30 KKKKKRVLYHMFEAYTE 46 (195)
Q Consensus 30 ND~~AIVLF~~~~~~~~ 46 (195)
.+-.++-+|-++-++..
T Consensus 26 ~esy~~YI~kVLKQVhP 42 (116)
T PLN00158 26 TETYKIYIYKVLKQVHP 42 (116)
T ss_pred cccHHHHHHHHHHHhCC
Confidence 47788888888887654
No 198
>COG3859 Predicted membrane protein [Function unknown]
Probab=22.16 E-value=4.3e+02 Score=21.39 Aligned_cols=55 Identities=20% Similarity=0.336 Sum_probs=23.8
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhh
Q psy1930 60 GLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFH 115 (195)
Q Consensus 60 ~~~~f~~~~~gGiliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~y~lae~l~ 115 (195)
.+..|-+..=.|.+-|++.|.+--.+-+.--- ...|.++--.+||.+-.+|..+.
T Consensus 45 ~liafRrG~kaG~~tGLl~Gll~~i~G~~Y~l-hpsQ~~ldYilaf~~iG~aG~F~ 99 (185)
T COG3859 45 LLIAFRRGLKAGLLTGLLWGLLHLILGKAYIL-HPSQVLLDYILAFMAIGFAGLFA 99 (185)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhCchhhc-cHHHHHHHhhHHHHHHHHHHHHH
Confidence 34444444444555555555432222210001 12455555555555555554443
No 199
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=22.09 E-value=6.1e+02 Score=23.13 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=13.7
Q ss_pred HHHHHHhhcchhHHHHHHHHHH
Q psy1930 62 ASFFVVAVGGTVIGVIWGFLTG 83 (195)
Q Consensus 62 ~~f~~~~~gGiliG~~~G~l~~ 83 (195)
..+.+++..|+++|+++|+...
T Consensus 7 ~~l~~~iligl~lGi~~G~~~~ 28 (428)
T PRK01663 7 KSLYFQVLVAIIIGILLGHFYP 28 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566667777777776654
No 200
>COG1963 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.01 E-value=86 Score=24.61 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=19.1
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHH
Q psy1930 61 LASFFVVAVGGTVIGVIWGFLTGFVT 86 (195)
Q Consensus 61 ~~~f~~~~~gGiliG~~~G~l~~~ll 86 (195)
.+.-+.+.+.|.++|++++|+....+
T Consensus 126 lGH~p~eV~~G~~lGI~i~~i~~~~~ 151 (153)
T COG1963 126 LGHTPLEVFAGLLLGILIAWIFYAFF 151 (153)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHh
Confidence 34445677888999999988877654
No 201
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=22.00 E-value=4.8e+02 Score=21.93 Aligned_cols=67 Identities=12% Similarity=0.124 Sum_probs=39.2
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHhhc-cccccHHHHHHH----HHHHHHHHHHhhhhhhhHHHH---HHHHHh
Q psy1930 60 GLASFFVVAVGGTVIGVIWGFLTGFVTRFT-NEVRVIEPIFIF----VMAYLAYLTAEIFHMSGILAI---TFCGIT 128 (195)
Q Consensus 60 ~~~~f~~~~~gGiliG~~~G~l~~~llk~~-~~~~~~~~~l~l----a~a~~~y~lae~l~~SGiLAv---vv~Gl~ 128 (195)
.+..-.+.+..|+++|..++.+..+++.+. .-++ +...++ .+.=.+..++|.+|+.--+++ +++|++
T Consensus 88 ~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~--~~~~Sl~pKSVTtPIAm~is~~iGG~psLtA~~ViitGi~ 162 (232)
T PRK04288 88 VLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDN--AVMASMLPQAATTAIALPVSAGIGGIKEITSFAVIFNAVI 162 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH--HHHHHHhhHhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 344445568888888988888888777554 3221 222222 233345567787877665554 344544
No 202
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=21.97 E-value=95 Score=19.48 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=18.7
Q ss_pred HHhhcchhHHHHHHHHHHHHHhh
Q psy1930 66 VVAVGGTVIGVIWGFLTGFVTRF 88 (195)
Q Consensus 66 ~~~~gGiliG~~~G~l~~~llk~ 88 (195)
...+|++++|+.+|.....++|+
T Consensus 22 i~~ig~avL~v~V~i~v~kwiRr 44 (46)
T PF10389_consen 22 IATIGGAVLGVIVGIAVYKWIRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44668899999999888888776
No 203
>COG4208 CysW ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]
Probab=21.84 E-value=4.9e+02 Score=22.40 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcc
Q psy1930 55 VDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTN 90 (195)
Q Consensus 55 ~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk~~~ 90 (195)
.+..+++..-+......+-+-.++|...+|...+.+
T Consensus 61 PdalsAi~LTllva~I~VPlN~vFGv~aAW~iakf~ 96 (287)
T COG4208 61 PDALSAIKLTLLVALIAVPLNVVFGVAAAWAIARFE 96 (287)
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcc
Confidence 355666666667777788888899999999887765
No 204
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=21.81 E-value=2.2e+02 Score=22.04 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=11.2
Q ss_pred HHHHHHHHHhhhhhhhHHHHH
Q psy1930 103 MAYLAYLTAEIFHMSGILAIT 123 (195)
Q Consensus 103 ~a~~~y~lae~l~~SGiLAvv 123 (195)
....-|++|. ++.|+++.-+
T Consensus 144 s~i~wYfL~s-~~~~~vi~k~ 163 (168)
T PF01956_consen 144 SSISWYFLCS-FGLRQVIRKL 163 (168)
T ss_pred HHHHHHHHHH-HHHHHHHHHH
Confidence 3344444444 6777777644
No 205
>PRK10711 hypothetical protein; Provisional
Probab=21.71 E-value=4.6e+02 Score=22.05 Aligned_cols=60 Identities=12% Similarity=0.064 Sum_probs=33.5
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHhhc-cccccHHHHHHH----HHHHHHHHHHhhhhhhhHHH
Q psy1930 60 GLASFFVVAVGGTVIGVIWGFLTGFVTRFT-NEVRVIEPIFIF----VMAYLAYLTAEIFHMSGILA 121 (195)
Q Consensus 60 ~~~~f~~~~~gGiliG~~~G~l~~~llk~~-~~~~~~~~~l~l----a~a~~~y~lae~l~~SGiLA 121 (195)
.+..-...+..|+.+|.++|.+..+++.+. .-++ +...++ .+.=.+..++|.+|+.--++
T Consensus 83 ~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~--~~~~Sl~pkSVTtPIAm~is~~iGG~~sLt 147 (231)
T PRK10711 83 QIRARWKSIISICFIGSVVAMVTGTAVALWMGATP--EIAASILPKSVTTPIAMAVGGSIGGIPAIS 147 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH--HHHHHHhhhhhhHHHHHHHHHHhCCcHHHH
Confidence 344445567888888888888888777544 3221 121111 22233455667776655444
No 206
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=21.67 E-value=99 Score=21.07 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=12.1
Q ss_pred hhcchhHHHHHHHHHHHHH
Q psy1930 68 AVGGTVIGVIWGFLTGFVT 86 (195)
Q Consensus 68 ~~gGiliG~~~G~l~~~ll 86 (195)
+.+|.++|+++|.+..++.
T Consensus 62 l~l~~~~Gl~lgi~~~~~r 80 (82)
T PF13807_consen 62 LALGLFLGLILGIGLAFLR 80 (82)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4456777777776666553
No 207
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=21.34 E-value=1.2e+02 Score=20.23 Aligned_cols=30 Identities=10% Similarity=0.066 Sum_probs=22.2
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHhhcc
Q psy1930 61 LASFFVVAVGGTVIGVIWGFLTGFVTRFTN 90 (195)
Q Consensus 61 ~~~f~~~~~gGiliG~~~G~l~~~llk~~~ 90 (195)
+.+++..++..+++++..||+....+.+..
T Consensus 3 i~DiiQii~l~AlI~~pLGyl~~~~~~r~~ 32 (62)
T PF11120_consen 3 ISDIIQIIILCALIFFPLGYLARRWLPRIR 32 (62)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHHHH
Confidence 355666677788888999988887776554
No 208
>PF11933 DUF3451: Domain of unknown function (DUF3451); InterPro: IPR024583 This presumed domain is functionally uncharacterised. It is found in eukaryotic proteins, is typically between 199 and 238 amino acids in length, and has a conserved ADD sequence motif.
Probab=21.34 E-value=51 Score=27.56 Aligned_cols=17 Identities=53% Similarity=0.817 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy1930 4 KRRKERENKKKKKKKKK 20 (195)
Q Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (195)
|--|||+|.+||+|+|+
T Consensus 9 ks~kerrnr~~~~k~k~ 25 (225)
T PF11933_consen 9 KSAKERRNRRKKRKQKE 25 (225)
T ss_pred HHHHHHhhcchhhhhhh
Confidence 44577777655444433
No 209
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.25 E-value=5.6e+02 Score=22.44 Aligned_cols=41 Identities=10% Similarity=0.197 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhc---cccccHHHHHHHHHHHHHHHHHhhhh
Q psy1930 75 GVIWGFLTGFVTRFT---NEVRVIEPIFIFVMAYLAYLTAEIFH 115 (195)
Q Consensus 75 G~~~G~l~~~llk~~---~~~~~~~~~l~la~a~~~y~lae~l~ 115 (195)
.++.||+..-.+.+. +++.....++.+.+...+|..++.+.
T Consensus 129 ~l~~gWlvYd~lCrsplg~~~~~l~~~~~v~~~~~a~~~~q~FS 172 (300)
T PF06181_consen 129 SLVLGWLVYDGLCRSPLGKNDTLLGVVLFVLLVVAAWGLTQVFS 172 (300)
T ss_pred HHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 345667777666554 34456777788888889999988753
No 210
>PF14143 YrhC: YrhC-like protein
Probab=21.25 E-value=2.8e+02 Score=18.99 Aligned_cols=27 Identities=7% Similarity=0.106 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhhccc
Q psy1930 145 VKYAMKMLSSSSETIIFMFLGISTISD 171 (195)
Q Consensus 145 ~~~fw~~l~~l~~~~iFvllG~~v~~~ 171 (195)
..++-...--++-.-.|+++|+.+++.
T Consensus 7 i~DyKrf~~vLLAvs~FlYiG~viP~~ 33 (72)
T PF14143_consen 7 IEDYKRFAFVLLAVSTFLYIGTVIPIG 33 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 334444444566777899999998754
No 211
>TIGR03409 urea_trans_UrtB urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=21.24 E-value=2.8e+02 Score=23.51 Aligned_cols=46 Identities=9% Similarity=0.016 Sum_probs=24.5
Q ss_pred HhhcchhHHHHHHHHHHHHH-hhccccccHHHHHHHHHHHHHHHHHh
Q psy1930 67 VAVGGTVIGVIWGFLTGFVT-RFTNEVRVIEPIFIFVMAYLAYLTAE 112 (195)
Q Consensus 67 ~~~gGiliG~~~G~l~~~ll-k~~~~~~~~~~~l~la~a~~~y~lae 112 (195)
.+..+++++.++|++..++. |+++.++....+.|+++.+....+.+
T Consensus 66 ~l~~a~~~~~l~g~~~~~~~~r~l~~~~~~~~i~Tl~~~~i~~~~~~ 112 (291)
T TIGR03409 66 AIPLAFLVSALLGALIERTVIRHLYGRPLDTLLATWGISLILQQAAR 112 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 34455666666666665443 33443333345666776666544443
No 212
>PRK10297 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC; Provisional
Probab=21.19 E-value=6.6e+02 Score=23.17 Aligned_cols=20 Identities=10% Similarity=0.200 Sum_probs=16.5
Q ss_pred hhhhhhhHHHHHHHHHhhhc
Q psy1930 112 EIFHMSGILAITFCGITMKN 131 (195)
Q Consensus 112 e~l~~SGiLAvvv~Gl~l~~ 131 (195)
+++|.+|+....+.|++.+.
T Consensus 142 ~~lG~~Glf~aiivgll~~~ 161 (452)
T PRK10297 142 NWLGGANIISGIIIGLVVAE 161 (452)
T ss_pred cccchhHHHHHHHHHHHHHH
Confidence 45789999999999987764
No 213
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=21.17 E-value=6e+02 Score=22.73 Aligned_cols=68 Identities=10% Similarity=0.175 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhh---h-hhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhh
Q psy1930 99 FIFVMAYLAYLTAEI---F-HMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGIST 168 (195)
Q Consensus 99 l~la~a~~~y~lae~---l-~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v 168 (195)
.-+.++...|.++.. + +.+++.-+.+.|.++...+- ++++.++..+++.+.+...+-..+++=+|+..
T Consensus 183 ~Gl~~a~~~y~~g~l~~~~~~Ih~~v~mII~~vi~k~~gl--lp~~i~~~a~~~~~F~~~~lt~~ll~giGla~ 254 (347)
T TIGR00783 183 SGVLFAVALFMAGGLLKSFPGIPAYAFMILIAAALKAFGL--VPKEIEEGAKMLSQFISKNLTWPLMVGVGVSY 254 (347)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 334555555555543 2 45778888888888876542 57777777777666666666666666567664
No 214
>COG1173 DppC ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=21.12 E-value=3.1e+02 Score=23.62 Aligned_cols=15 Identities=40% Similarity=0.893 Sum_probs=7.1
Q ss_pred chhHHHHHHHHHHHH
Q psy1930 71 GTVIGVIWGFLTGFV 85 (195)
Q Consensus 71 GiliG~~~G~l~~~l 85 (195)
+.++|.++|.++++.
T Consensus 99 ~~~iG~~lG~iaGy~ 113 (289)
T COG1173 99 SLVIGTLLGLLAGYF 113 (289)
T ss_pred HHHHHHHHHHHHHHc
Confidence 444455555444443
No 215
>cd06574 TM_PBP1_branched-chain-AA_like Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBP
Probab=21.02 E-value=2.5e+02 Score=23.44 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=24.0
Q ss_pred HHhhcchhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHH
Q psy1930 66 VVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAY 108 (195)
Q Consensus 66 ~~~~gGiliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~y 108 (195)
..+..++++|.++|.+..++..+.+.++. +.++++.+..+
T Consensus 48 ~~~~~~~~~~~l~g~~~g~~~~r~~~~~~---i~tl~~~~~~~ 87 (266)
T cd06574 48 LALIAAILAGAAAGLVTGFLHTRLKINGL---LAGILIMIGLY 87 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHH---HHHHHHHHHHH
Confidence 44556777777788777777777765332 33444444433
No 216
>TIGR01310 L7 60S ribosomal protein L7, eukaryotic. Members of this family average ~ 250 residues in length, somewhat longer than the archaeal L30P/L7E homolog (~ 155 residues) and much longer than the related bacterial/organellar form (~ 60 residues).
Probab=20.92 E-value=1.2e+02 Score=25.49 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=12.4
Q ss_pred ccHHHHHHHHHHHHHHH
Q psy1930 93 RVIEPIFIFVMAYLAYL 109 (195)
Q Consensus 93 ~~~~~~l~la~a~~~y~ 109 (195)
+....++-.+-||++|.
T Consensus 112 ~~~~~ML~~VepYVt~G 128 (235)
T TIGR01310 112 KATLQMLRIVEPYVAYG 128 (235)
T ss_pred HHHHHHHHhcCCeEEEe
Confidence 45666777888888884
No 217
>PF14632 SPT6_acidic: Acidic N-terminal SPT6
Probab=20.82 E-value=47 Score=23.94 Aligned_cols=6 Identities=0% Similarity=0.407 Sum_probs=2.5
Q ss_pred HHhhcc
Q psy1930 26 KKKKKK 31 (195)
Q Consensus 26 ~~~~ND 31 (195)
+.-.||
T Consensus 52 ~~~~d~ 57 (92)
T PF14632_consen 52 REEEDD 57 (92)
T ss_pred hhhhhh
Confidence 333444
No 218
>cd06582 TM_PBP1_LivH_like Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transpo
Probab=20.73 E-value=3.1e+02 Score=22.87 Aligned_cols=46 Identities=11% Similarity=0.132 Sum_probs=26.5
Q ss_pred HHhhcchhHHHHHHHHHH-HHHhhccccccHHHHHHHHHHHHHHHHH
Q psy1930 66 VVAVGGTVIGVIWGFLTG-FVTRFTNEVRVIEPIFIFVMAYLAYLTA 111 (195)
Q Consensus 66 ~~~~gGiliG~~~G~l~~-~llk~~~~~~~~~~~l~la~a~~~y~la 111 (195)
..+..++++|.++|.+.. .++++.+.++..-.+.++++.+..+.+.
T Consensus 53 ~~i~~a~~~~~~~g~l~~~~~~~~~~~~~~~~~i~Tl~~~~i~~~~~ 99 (272)
T cd06582 53 LALLLALLVAALLGVLLERLVLRPLRGAPLLTLLITFGGLLILLQGL 99 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 445566777777774443 4555554333335667777776665443
No 219
>COG1284 Uncharacterized conserved protein [Function unknown]
Probab=20.65 E-value=5.6e+02 Score=22.17 Aligned_cols=70 Identities=13% Similarity=0.180 Sum_probs=40.6
Q ss_pred HHHHHhhcchhHHHHHHHHH-------------HHHHhhcccccc----HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q psy1930 63 SFFVVAVGGTVIGVIWGFLT-------------GFVTRFTNEVRV----IEPIFIFVMAYLAYLTAEIFHMSGILAITFC 125 (195)
Q Consensus 63 ~f~~~~~gGiliG~~~G~l~-------------~~llk~~~~~~~----~~~~l~la~a~~~y~lae~l~~SGiLAvvv~ 125 (195)
.++..++||++.|+.+|.+. .++-++...+.. .-..+++.++...|.-.| -..+-+++.++.
T Consensus 113 ~ll~aifgG~l~G~G~glv~r~ggStGGtdIlA~~l~kk~g~~iG~~ll~vd~~i~~~a~~~~~~~~-~~lytli~~~i~ 191 (289)
T COG1284 113 PLLAALFGGLLLGIGLGLVFRHGGSTGGTDILALILNKKFGISVGKILLLVDGFILLIAALVFGPLP-NALYTLLSLFVA 191 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHH
Confidence 35566778888888777543 333444442211 122334555555554122 456779999999
Q ss_pred HHhhhccc
Q psy1930 126 GITMKNYV 133 (195)
Q Consensus 126 Gl~l~~~~ 133 (195)
+.+++...
T Consensus 192 ~~vid~v~ 199 (289)
T COG1284 192 SKVIDIVQ 199 (289)
T ss_pred HHHHHHHH
Confidence 99988643
No 220
>TIGR01185 devC DevC protein. This model describes a predicted membrane subunit, DevC, of an ABC transporter known so far from two species of cyanobacteria. Some experimental data from mutational analysis suggest that this protein along with DevA and DevB encoded in the same operon may be involved in the transport/export of glycolipids.
Probab=20.50 E-value=3.1e+02 Score=24.32 Aligned_cols=28 Identities=18% Similarity=0.007 Sum_probs=14.2
Q ss_pred HHHHHHHHH----hhcchhHHHHHHHHHHHHH
Q psy1930 59 SGLASFFVV----AVGGTVIGVIWGFLTGFVT 86 (195)
Q Consensus 59 ~~~~~f~~~----~~gGiliG~~~G~l~~~ll 86 (195)
+....++.+ .+.|.++|+++|++.+...
T Consensus 303 ~I~~~~l~Ea~ll~~iG~~~G~~lg~~~~~~~ 334 (380)
T TIGR01185 303 YLLGVILQEALLLACLGYLPGWGFAILLYTTA 334 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 3445666666665554433
No 221
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=20.43 E-value=84 Score=22.06 Aligned_cols=11 Identities=27% Similarity=0.676 Sum_probs=4.8
Q ss_pred chhHHHHHHHH
Q psy1930 71 GTVIGVIWGFL 81 (195)
Q Consensus 71 GiliG~~~G~l 81 (195)
++.+|+++|++
T Consensus 80 AagvG~llG~L 90 (94)
T PF05957_consen 80 AAGVGFLLGLL 90 (94)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 222
>PRK11618 inner membrane ABC transporter permease protein YjfF; Provisional
Probab=20.40 E-value=2.6e+02 Score=24.09 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=23.3
Q ss_pred HhhcchhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHH
Q psy1930 67 VAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAY 108 (195)
Q Consensus 67 ~~~gGiliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~y 108 (195)
.+..++++|.++|++.+++..+++.++ .+.|+++.+..+
T Consensus 90 a~~~a~~~~~l~G~~~g~~~~rl~~~~---~i~Tl~~~~v~~ 128 (317)
T PRK11618 90 AFPLVLVMGAAFGAFMGALIHYLKLPA---FIVTLAGMFLAR 128 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCH---HHHHHHHHHHHH
Confidence 344566666777777777777776533 355666554444
No 223
>PF14256 YwiC: YwiC-like protein
Probab=20.35 E-value=62 Score=24.53 Aligned_cols=23 Identities=9% Similarity=0.224 Sum_probs=18.2
Q ss_pred HHHHHHHhhccchhhHHHHHHHH
Q psy1930 21 KKKKKKKKKKKKKKRVLYHMFEA 43 (195)
Q Consensus 21 ~~~~~~~~~ND~~AIVLF~~~~~ 43 (195)
++|+.|.-.||-.+++.+.+..-
T Consensus 102 ~~~~eRsLlndl~~i~a~~l~~~ 124 (129)
T PF14256_consen 102 KRKRERSLLNDLAAIAAFSLMGP 124 (129)
T ss_pred HhcCchhHHHhHHHHHHHHHHHH
Confidence 56777889999999998876643
No 224
>TIGR03408 urea_trans_UrtC urea ABC transporter, permease protein UrtC. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=20.11 E-value=2.8e+02 Score=23.85 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=26.8
Q ss_pred HHhhcchhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHH
Q psy1930 66 VVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLT 110 (195)
Q Consensus 66 ~~~~gGiliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~y~l 110 (195)
..+..++++|.++|.+.+++.-|.+-++..-.+.|++++...+.+
T Consensus 90 ~al~~a~~~~a~~g~~~G~~~~r~rl~~~~~al~Tl~~~~~~~~~ 134 (313)
T TIGR03408 90 FALLAVVLVPGLLAFLLGYFVFRSRIKGVYFSIITQALALALALL 134 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHH
Confidence 445556667777777777766554433445566666666554433
Done!