Query psy1930
Match_columns 195
No_of_seqs 173 out of 1498
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 19:57:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k3c_A TMIX peptide; membrane 98.4 8E-10 2.7E-14 64.3 -6.2 31 103-133 2-32 (33)
2 2htg_A NHE-1, NHE1 isoform of 89.9 0.04 1.4E-06 30.3 -0.7 13 28-40 15-27 (28)
3 1zcd_A Na(+)/H(+) antiporter 1 86.7 3.6 0.00012 35.9 9.2 65 104-170 212-278 (388)
4 2xzm_P RPS24E; ribosome, trans 62.7 3.7 0.00013 31.1 2.1 19 4-22 103-121 (149)
5 3dtp_E RLC, myosin regulatory 60.0 1.9 6.4E-05 32.7 -0.0 6 39-44 61-66 (196)
6 3p8c_D Wiskott-aldrich syndrom 54.4 8.2 0.00028 32.2 3.0 19 114-132 246-264 (279)
7 4av3_A K(+)-stimulated pyropho 54.3 50 0.0017 31.2 8.5 34 101-134 434-471 (735)
8 1b6a_A Methionine aminopeptida 44.8 3.9 0.00013 36.7 -0.5 15 28-42 111-125 (478)
9 3vfd_A Spastin; ATPase, microt 43.9 4.8 0.00016 34.2 0.0 11 21-31 80-90 (389)
10 3o7q_A L-fucose-proton symport 43.9 1.2E+02 0.0043 24.5 8.9 15 78-92 311-325 (438)
11 4b19_A PEPA1; toxin, toxin apo 42.4 11 0.00038 20.7 1.3 25 65-89 4-28 (30)
12 3ukx_C Bimax2 peptide; arm rep 34.9 1.3 4.4E-05 23.3 -3.1 12 21-32 7-18 (28)
13 2j1d_G DAAM1, disheveled-assoc 34.4 24 0.00081 31.3 3.0 12 4-15 399-410 (483)
14 4a01_A Proton pyrophosphatase; 33.6 1.5E+02 0.0051 28.0 8.2 34 101-134 467-504 (766)
15 2l35_A DAP12-NKG2C_TM; immunor 30.6 43 0.0015 21.5 2.9 31 96-127 16-46 (63)
16 3k3f_A UREA transporter; membr 30.2 1.6E+02 0.0054 24.9 7.3 23 68-90 51-73 (340)
17 2lx0_A Membrane fusion protein 23.8 77 0.0026 16.9 2.7 23 147-169 4-26 (32)
18 2kv5_A FST, putative uncharact 22.8 37 0.0013 18.9 1.3 24 64-87 4-27 (33)
19 2l34_A TYRO protein tyrosine k 22.6 96 0.0033 17.1 3.1 9 71-79 7-15 (33)
20 1tzy_B Histone H2B; histone-fo 21.7 85 0.0029 22.9 3.5 23 24-46 29-51 (126)
21 2nqb_D Histone H2B; nucleosome 21.2 74 0.0025 23.1 3.1 23 24-46 26-48 (123)
22 3izc_e 60S ribosomal protein R 20.5 86 0.0029 25.4 3.7 14 95-108 123-136 (244)
23 3tmm_A Transcription factor A, 20.2 1.3E+02 0.0043 23.9 4.6 7 33-39 152-158 (238)
24 2lv9_A Histone-lysine N-methyl 20.0 57 0.002 22.3 2.2 17 16-32 81-97 (98)
No 1
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=98.44 E-value=8e-10 Score=64.29 Aligned_cols=31 Identities=45% Similarity=0.866 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHhhhccc
Q psy1930 103 MAYLAYLTAEIFHMSGILAITFCGITMKNYV 133 (195)
Q Consensus 103 ~a~~~y~lae~l~~SGiLAvvv~Gl~l~~~~ 133 (195)
.||++|.+||.+|.||++|+++||+++++|.
T Consensus 2 ~~y~~Yl~AE~~~lSGIlavv~~Gi~~~~y~ 32 (33)
T 2k3c_A 2 KSYMAYLSAELFHLSGIMALIASGVVMRPKK 32 (33)
T ss_dssp CCSTTTGGGSSSTTTTTTTTTTTTSCCCCCC
T ss_pred hhHHHHHHHHHhCcChHHHHHHHHHHHhhcc
Confidence 4789999999999999999999999999874
No 2
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic}
Probab=89.91 E-value=0.04 Score=30.27 Aligned_cols=13 Identities=23% Similarity=0.194 Sum_probs=11.0
Q ss_pred hhccchhhHHHHH
Q psy1930 28 KKKKKKKRVLYHM 40 (195)
Q Consensus 28 ~~ND~~AIVLF~~ 40 (195)
-.||++|+|+|.+
T Consensus 15 llNDavaiVlf~~ 27 (28)
T 2htg_A 15 LLNDAVTVVLYKK 27 (28)
T ss_dssp TTTTTTTTTTTTC
T ss_pred eecccEEEEEEec
Confidence 3699999999964
No 3
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=86.65 E-value=3.6 Score=35.94 Aligned_cols=65 Identities=11% Similarity=0.025 Sum_probs=42.9
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHH--HHhHHHHHHHhhhhcc
Q psy1930 104 AYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSS--SSETIIFMFLGISTIS 170 (195)
Q Consensus 104 a~~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~--l~~~~iFvllG~~v~~ 170 (195)
...+++..|..|....++.|.+|+++....+++.++ .++.++-.+-... ++=.+.|+..|+.+..
T Consensus 212 gl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~--~~~le~~l~p~v~~~ilPlFaFanaGv~l~~ 278 (388)
T 1zcd_A 212 GVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSP--AKRLEHVLHPWVAYLILPLFAFANAGVSLQG 278 (388)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCH--HHHHHHHHHHHHHHTHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCH--HHHHHHHHHHHHHHHHHHHHHHHhcCeeecc
Confidence 335677778999999999999999998753321222 2334444444442 3555557889998854
No 4
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=62.68 E-value=3.7 Score=31.14 Aligned_cols=19 Identities=26% Similarity=0.218 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy1930 4 KRRKERENKKKKKKKKKKK 22 (195)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~ 22 (195)
|.|||++|+.||-.-.+|.
T Consensus 103 kqrKe~knr~kkvrGt~k~ 121 (149)
T 2xzm_P 103 RSFKELKRKIKRTSGKAIT 121 (149)
T ss_dssp HHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHhhhhhhcchhhh
Confidence 4577888877764333333
No 5
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=60.02 E-value=1.9 Score=32.75 Aligned_cols=6 Identities=17% Similarity=0.362 Sum_probs=2.4
Q ss_pred HHHHHH
Q psy1930 39 HMFEAY 44 (195)
Q Consensus 39 ~~~~~~ 44 (195)
..|..+
T Consensus 61 ~~F~~~ 66 (196)
T 3dtp_E 61 EAFQLI 66 (196)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 334433
No 6
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=54.37 E-value=8.2 Score=32.18 Aligned_cols=19 Identities=11% Similarity=-0.052 Sum_probs=11.3
Q ss_pred hhhhhHHHHHHHHHhhhcc
Q psy1930 114 FHMSGILAITFCGITMKNY 132 (195)
Q Consensus 114 l~~SGiLAvvv~Gl~l~~~ 132 (195)
-..+++-++.+.=+.|...
T Consensus 246 ~~~~~va~Il~rr~a~~~s 264 (279)
T 3p8c_D 246 RIENDVATILSRRIAVEYS 264 (279)
T ss_dssp ---CCHHHHHHHHHHTTTC
T ss_pred cccccHHHHHHHHHHHhhc
Confidence 3467777777777777653
No 7
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=54.29 E-value=50 Score=31.15 Aligned_cols=34 Identities=15% Similarity=0.263 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhhh----hhhHHHHHHHHHhhhcccc
Q psy1930 101 FVMAYLAYLTAEIFH----MSGILAITFCGITMKNYVE 134 (195)
Q Consensus 101 la~a~~~y~lae~l~----~SGiLAvvv~Gl~l~~~~~ 134 (195)
.+..+.+|+++.++| .-|.|+..-.-+.+..|+|
T Consensus 434 ~~~I~~s~~~aGlyGiaiAa~GMLst~gi~lAvDayGP 471 (735)
T 4av3_A 434 VLGILFADYFAGLYGVAIAALGMLSFVATSVSVDSYGP 471 (735)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccceEeeecccC
Confidence 334577888876543 4456666555566666654
No 8
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A*
Probab=44.77 E-value=3.9 Score=36.67 Aligned_cols=15 Identities=0% Similarity=0.126 Sum_probs=8.0
Q ss_pred hhccchhhHHHHHHH
Q psy1930 28 KKKKKKKRVLYHMFE 42 (195)
Q Consensus 28 ~~ND~~AIVLF~~~~ 42 (195)
.-.|+..+-+=.+|-
T Consensus 111 ~~~~~~~~~~~~~~~ 125 (478)
T 1b6a_A 111 VQTDPPSVPICDLYP 125 (478)
T ss_dssp CCCSSCCSCHHHHST
T ss_pred ccCCCCCCcHHHhCC
Confidence 356666665544443
No 9
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=43.91 E-value=4.8 Score=34.17 Aligned_cols=11 Identities=36% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHhhcc
Q psy1930 21 KKKKKKKKKKK 31 (195)
Q Consensus 21 ~~~~~~~~~ND 31 (195)
++||||...++
T Consensus 80 ~~kk~kd~~~~ 90 (389)
T 3vfd_A 80 ATRKKKDLKNF 90 (389)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 34444444443
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=43.91 E-value=1.2e+02 Score=24.55 Aligned_cols=15 Identities=7% Similarity=-0.111 Sum_probs=7.6
Q ss_pred HHHHHHHHHhhcccc
Q psy1930 78 WGFLTGFVTRFTNEV 92 (195)
Q Consensus 78 ~G~l~~~llk~~~~~ 92 (195)
...+..++..+..+.
T Consensus 311 ~~~~~g~l~~r~~~~ 325 (438)
T 3o7q_A 311 GRFTGTWLISRFAPH 325 (438)
T ss_dssp HHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHhcch
Confidence 334445555665543
No 11
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=42.43 E-value=11 Score=20.69 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=19.5
Q ss_pred HHHhhcchhHHHHHHHHHHHHHhhc
Q psy1930 65 FVVAVGGTVIGVIWGFLTGFVTRFT 89 (195)
Q Consensus 65 ~~~~~gGiliG~~~G~l~~~llk~~ 89 (195)
+..+..-++.|.++.++..||.++-
T Consensus 4 fv~iia~visGcivalF~hWL~~r~ 28 (30)
T 4b19_A 4 FVHIIAPVISGCAIAFFSYWLSRRN 28 (30)
T ss_dssp GTSSTTTTHHHHHHHHHHHHHHHHS
T ss_pred ehhhHHHHHHHHHHHHHHHHHHhcc
Confidence 3445667889999999999998754
No 12
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=34.88 E-value=1.3 Score=23.33 Aligned_cols=12 Identities=17% Similarity=0.471 Sum_probs=7.9
Q ss_pred HHHHHHHhhccc
Q psy1930 21 KKKKKKKKKKKK 32 (195)
Q Consensus 21 ~~~~~~~~~ND~ 32 (195)
..|.||||-+|-
T Consensus 7 rrkrkrewdddd 18 (28)
T 3ukx_C 7 RRKRKREWDDDD 18 (28)
T ss_dssp CCCCCCCCCCSS
T ss_pred HHHhhcccccCC
Confidence 345678887763
No 13
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=34.43 E-value=24 Score=31.33 Aligned_cols=12 Identities=25% Similarity=0.764 Sum_probs=6.5
Q ss_pred hhHHHHHHHHHH
Q psy1930 4 KRRKERENKKKK 15 (195)
Q Consensus 4 ~~~~~~~~~~~~ 15 (195)
+||+|+|+|+++
T Consensus 399 ~~~~e~eekr~~ 410 (483)
T 2j1d_G 399 RKKKEEEERRAR 410 (483)
T ss_dssp HTHHHHTHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455666555543
No 14
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=33.58 E-value=1.5e+02 Score=28.04 Aligned_cols=34 Identities=15% Similarity=0.408 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhh----hhhhHHHHHHHHHhhhcccc
Q psy1930 101 FVMAYLAYLTAEIF----HMSGILAITFCGITMKNYVE 134 (195)
Q Consensus 101 la~a~~~y~lae~l----~~SGiLAvvv~Gl~l~~~~~ 134 (195)
.+..+.+|.++.++ -.-|.|+.....+.+..|+|
T Consensus 467 ~~ai~~sy~l~glyGiAlAa~GMLst~g~~lAvDayGP 504 (766)
T 4a01_A 467 AISIFVSFTFAAMYGIAVAALGMLSTIATGLAIDAYGP 504 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhheeeeeccCC
Confidence 33456677776543 34566666666677777765
No 15
>2l35_A DAP12-NKG2C_TM; immunoreceptor, transmembrane assembly, DAP12-NKG2C complex; NMR {Homo sapiens}
Probab=30.63 E-value=43 Score=21.49 Aligned_cols=31 Identities=13% Similarity=0.299 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q psy1930 96 EPIFIFVMAYLAYLTAEIFHMSGILAITFCGI 127 (195)
Q Consensus 96 ~~~l~la~a~~~y~lae~l~~SGiLAvvv~Gl 127 (195)
+++.++.++.+.|+.|.. +..|++.....++
T Consensus 16 DIi~TllLal~VY~~A~~-~~a~~lgi~c~~l 46 (63)
T 2l35_A 16 DLVLTVLIALAVYFLGRL-GTAEVLGIISIVL 46 (63)
T ss_dssp HHHHHHHHHHHHHHHCCS-SSCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccc-chhhhhhhhhHHH
Confidence 678899999999999965 4444444444433
No 16
>3k3f_A UREA transporter; membrane protein, channel, TRAN protein, structural genomics, PSI-2; 2.30A {Desulfovibrio vulgaris} PDB: 3k3g_A 3m6e_A 3me1_A
Probab=30.19 E-value=1.6e+02 Score=24.92 Aligned_cols=23 Identities=17% Similarity=0.034 Sum_probs=17.2
Q ss_pred hhcchhHHHHHHHHHHHHHhhcc
Q psy1930 68 AVGGTVIGVIWGFLTGFVTRFTN 90 (195)
Q Consensus 68 ~~gGiliG~~~G~l~~~llk~~~ 90 (195)
.....++|.++|.+++.++..-+
T Consensus 51 ~a~~allG~~~stltA~llg~~~ 73 (340)
T 3k3f_A 51 LGVCAVLGTAASTLTAQLLGVDK 73 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCH
Confidence 55677888888888888876544
No 17
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=23.80 E-value=77 Score=16.95 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhHHHHHHHhhhhc
Q psy1930 147 YAMKMLSSSSETIIFMFLGISTI 169 (195)
Q Consensus 147 ~fw~~l~~l~~~~iFvllG~~v~ 169 (195)
.+||.++-+...+.|+-+|.-++
T Consensus 4 tiweviaglvalltflafgfwlf 26 (32)
T 2lx0_A 4 TIWEVIAGLVALLTFLAFGFWLF 26 (32)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888887554
No 18
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=22.85 E-value=37 Score=18.94 Aligned_cols=24 Identities=4% Similarity=0.367 Sum_probs=16.0
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHh
Q psy1930 64 FFVVAVGGTVIGVIWGFLTGFVTR 87 (195)
Q Consensus 64 f~~~~~gGiliG~~~G~l~~~llk 87 (195)
++..+++-+++|+++-.+-.|+=+
T Consensus 4 i~~~IIaPivVGvvl~L~d~WLn~ 27 (33)
T 2kv5_A 4 LMSLVIAPIFVGLVLEMISRVLDE 27 (33)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 445667777888877766666543
No 19
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=22.64 E-value=96 Score=17.10 Aligned_cols=9 Identities=33% Similarity=0.903 Sum_probs=3.9
Q ss_pred chhHHHHHH
Q psy1930 71 GTVIGVIWG 79 (195)
Q Consensus 71 GiliG~~~G 79 (195)
|.+.|+++|
T Consensus 7 gaIaGIVvg 15 (33)
T 2l34_A 7 GVLAGIVVG 15 (33)
T ss_dssp HHHHHHHHH
T ss_pred ceEEeEeHH
Confidence 344444444
No 20
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=21.66 E-value=85 Score=22.89 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=14.0
Q ss_pred HHHHhhccchhhHHHHHHHHHHh
Q psy1930 24 KKKKKKKKKKKRVLYHMFEAYTE 46 (195)
Q Consensus 24 ~~~~~~ND~~AIVLF~~~~~~~~ 46 (195)
|+++...+-.++-+|.++-++-.
T Consensus 29 k~~~~~~esy~~YIyKVLKQVhp 51 (126)
T 1tzy_B 29 KRKKSRKESYSIYVYKVLKQVHP 51 (126)
T ss_dssp -----CCCCCHHHHHHHHHHHCT
T ss_pred CccccccccHHHHHHHHHHHhCC
Confidence 33444567888888988888653
No 21
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=21.24 E-value=74 Score=23.11 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=15.0
Q ss_pred HHHHhhccchhhHHHHHHHHHHh
Q psy1930 24 KKKKKKKKKKKRVLYHMFEAYTE 46 (195)
Q Consensus 24 ~~~~~~ND~~AIVLF~~~~~~~~ 46 (195)
|+++..++-.++-+|-++-++..
T Consensus 26 k~~~~~~esy~~YIyKVLKQVhp 48 (123)
T 2nqb_D 26 KKKRKRKESYAIYIYTVLKQVHP 48 (123)
T ss_dssp ---CCCCCCSHHHHHHHHHHHCT
T ss_pred CCCccccchHHHHHHHHHHHhCC
Confidence 33444567888888988888653
No 22
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e 3o58_G 3o5h_G 3u5e_F 3u5i_F 4b6a_F
Probab=20.47 E-value=86 Score=25.38 Aligned_cols=14 Identities=21% Similarity=0.524 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q psy1930 95 IEPIFIFVMAYLAY 108 (195)
Q Consensus 95 ~~~~l~la~a~~~y 108 (195)
..-.+-.+-+|++|
T Consensus 123 ~~gMLr~V~pyVt~ 136 (244)
T 3izc_e 123 TLELLKLIEPYVAY 136 (244)
T ss_dssp HHHHHHHHTTSCEE
T ss_pred HHHHHHHHhhHhhc
Confidence 33444444445444
No 23
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=20.22 E-value=1.3e+02 Score=23.87 Aligned_cols=7 Identities=14% Similarity=0.159 Sum_probs=3.8
Q ss_pred hhhHHHH
Q psy1930 33 KKRVLYH 39 (195)
Q Consensus 33 ~AIVLF~ 39 (195)
.|..+|.
T Consensus 152 say~lF~ 158 (238)
T 3tmm_A 152 SAYNVYV 158 (238)
T ss_dssp CHHHHHH
T ss_pred cHHHHHH
Confidence 5655554
No 24
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=20.01 E-value=57 Score=22.30 Aligned_cols=17 Identities=6% Similarity=0.208 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhhccc
Q psy1930 16 KKKKKKKKKKKKKKKKK 32 (195)
Q Consensus 16 ~~~~~~~~~~~~~~ND~ 32 (195)
++.+.+++++|++.+|+
T Consensus 81 ~~~~~~q~~kre~~~~G 97 (98)
T 2lv9_A 81 ERAVLLQRRKRENMSDG 97 (98)
T ss_dssp HHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHhhhhhcC
Confidence 34445556667777775
Done!