Query psy1930
Match_columns 195
No_of_seqs 173 out of 1498
Neff 7.1
Searched_HMMs 13730
Date Fri Aug 16 19:57:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1930.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1930hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pv7a_ f.38.1.2 (A:) Lactose 71.3 10 0.00076 28.1 8.7 21 71-91 268-288 (417)
2 d1l7va_ f.22.1.1 (A:) ABC tran 41.7 32 0.0023 26.9 6.8 24 68-91 60-83 (324)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 40.4 67 0.0049 24.0 11.3 31 138-168 373-404 (447)
4 d1r3jc_ f.14.1.1 (C:) Potassiu 18.0 87 0.0063 19.5 4.5 53 37-89 45-97 (103)
5 d2axtl1 f.23.31.1 (L:1-37) Pho 17.8 29 0.0021 18.3 1.5 15 118-132 20-34 (37)
6 d1tzya_ a.22.1.1 (A:) Histone 14.5 1.2E+02 0.0086 19.6 4.5 42 79-120 16-57 (106)
7 d1mdya_ a.38.1.1 (A:) Myod B/H 14.2 47 0.0034 19.6 2.1 32 1-34 1-32 (68)
8 d1vhxa_ c.55.3.8 (A:) Hypothet 14.0 46 0.0033 22.5 2.3 22 23-44 116-137 (140)
9 d2e74g1 f.23.26.1 (G:9-35) Pet 11.6 47 0.0035 16.0 1.2 17 118-134 4-20 (27)
10 d1v54d_ f.23.1.1 (D:) Mitochon 11.4 67 0.0049 22.2 2.5 23 67-89 77-99 (144)
No 1
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=71.32 E-value=10 Score=28.07 Aligned_cols=21 Identities=10% Similarity=0.210 Sum_probs=10.8
Q ss_pred chhHHHHHHHHHHHHHhhccc
Q psy1930 71 GTVIGVIWGFLTGFVTRFTNE 91 (195)
Q Consensus 71 GiliG~~~G~l~~~llk~~~~ 91 (195)
+.+.+...+.+..++.++...
T Consensus 268 ~~~~~~~~~~~~~~l~~r~~~ 288 (417)
T d1pv7a_ 268 GELLNASIMFFAPLIINRIGG 288 (417)
T ss_dssp HHHHHHHHHTTHHHHHHHHCH
T ss_pred cccccccchhhhhhhhccccc
Confidence 344444455555566655543
No 2
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=41.70 E-value=32 Score=26.88 Aligned_cols=24 Identities=4% Similarity=0.140 Sum_probs=18.0
Q ss_pred hhcchhHHHHHHHHHHHHHhhccc
Q psy1930 68 AVGGTVIGVIWGFLTGFVTRFTNE 91 (195)
Q Consensus 68 ~~gGiliG~~~G~l~~~llk~~~~ 91 (195)
+..++++|..+|.....+....++
T Consensus 60 ~l~a~l~Ga~La~sG~~lQ~~~rN 83 (324)
T d1l7va_ 60 TLAVLLVGAALAISGAVMQALFEN 83 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 567888999888887777665553
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=40.45 E-value=67 Score=23.97 Aligned_cols=31 Identities=10% Similarity=0.103 Sum_probs=13.6
Q ss_pred ChhHHHHHHHHHHHHHHHHhHHHH-HHHhhhh
Q psy1930 138 SHKSHTTVKYAMKMLSSSSETIIF-MFLGIST 168 (195)
Q Consensus 138 ~~~~~~~~~~fw~~l~~l~~~~iF-vllG~~v 168 (195)
+++.+.....+.....++.-.++. .+.|...
T Consensus 373 p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~ 404 (447)
T d1pw4a_ 373 PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 404 (447)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334344444555555555433332 3445444
No 4
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=17.99 E-value=87 Score=19.50 Aligned_cols=53 Identities=21% Similarity=0.270 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhc
Q psy1930 37 LYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFT 89 (195)
Q Consensus 37 LF~~~~~~~~~g~~~~~~~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk~~ 89 (195)
+|-.+..+.+.|=.|..+.+...=+...+..+.|-.++++.+|.+...+..+-
T Consensus 45 ly~~~vT~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~ 97 (103)
T d1r3jc_ 45 LWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGRE 97 (103)
T ss_dssp HHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhheeeecccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443322233323333334444555555566777777766665443
No 5
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=17.76 E-value=29 Score=18.25 Aligned_cols=15 Identities=27% Similarity=0.576 Sum_probs=10.5
Q ss_pred hHHHHHHHHHhhhcc
Q psy1930 118 GILAITFCGITMKNY 132 (195)
Q Consensus 118 GiLAvvv~Gl~l~~~ 132 (195)
|.+-+++.|+.+++|
T Consensus 20 GlLlifvl~vLFssY 34 (37)
T d2axtl1 20 GLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 667777777777665
No 6
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
Probab=14.54 E-value=1.2e+02 Score=19.64 Aligned_cols=42 Identities=29% Similarity=0.377 Sum_probs=26.1
Q ss_pred HHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhhhhhHH
Q psy1930 79 GFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFHMSGIL 120 (195)
Q Consensus 79 G~l~~~llk~~~~~~~~~~~l~la~a~~~y~lae~l~~SGiL 120 (195)
|.+-.++.+.-.....-...-....+.+-|..+|.+..+|=-
T Consensus 16 ~rv~r~Lk~~~~~~rv~~~apVylaAVLEYLtaEiLELAgn~ 57 (106)
T d1tzya_ 16 GRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNA 57 (106)
T ss_dssp HHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCccccccCCCchHHHHHHHHHHHHHHHHHhhHH
Confidence 344444444222223344566777888999999999987643
No 7
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.21 E-value=47 Score=19.58 Aligned_cols=32 Identities=19% Similarity=0.419 Sum_probs=19.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHhhccchh
Q psy1930 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34 (195)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ND~~A 34 (195)
|++||+.....++ ....-.-++.|+..||+..
T Consensus 1 me~kr~~~~~~rR--~~hn~~Er~Rr~~in~~~~ 32 (68)
T d1mdya_ 1 MELKRKTTNADRR--KAATMRERRRLSKVNEAFE 32 (68)
T ss_dssp CCSSCCCHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCCCcHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 5677765444433 2344556777889998743
No 8
>d1vhxa_ c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillus subtilis [TaxId: 1423]}
Probab=14.03 E-value=46 Score=22.50 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=15.5
Q ss_pred HHHHHhhccchhhHHHHHHHHH
Q psy1930 23 KKKKKKKKKKKKRVLYHMFEAY 44 (195)
Q Consensus 23 ~~~~~~~ND~~AIVLF~~~~~~ 44 (195)
+++|++.++-.|.++.+.+++-
T Consensus 116 ~~~k~~iD~~AA~iILe~~L~~ 137 (140)
T d1vhxa_ 116 QKRKKVIDKMAAVMILQGYLDS 137 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHH
Confidence 3345678888888888777653
No 9
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.60 E-value=47 Score=15.99 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=12.2
Q ss_pred hHHHHHHHHHhhhcccc
Q psy1930 118 GILAITFCGITMKNYVE 134 (195)
Q Consensus 118 GiLAvvv~Gl~l~~~~~ 134 (195)
|.+-+..+|++.+.|..
T Consensus 4 gli~~tl~glf~aayqq 20 (27)
T d2e74g1 4 GLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHH
Confidence 66777778888877653
No 10
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.42 E-value=67 Score=22.15 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=17.5
Q ss_pred HhhcchhHHHHHHHHHHHHHhhc
Q psy1930 67 VAVGGTVIGVIWGFLTGFVTRFT 89 (195)
Q Consensus 67 ~~~gGiliG~~~G~l~~~llk~~ 89 (195)
.++||+++|+.+|.++..+.+..
T Consensus 77 ~v~g~~~~~i~~s~~i~~~~r~~ 99 (144)
T d1v54d_ 77 TVVGAAMFFIGFTALLLIWEKHY 99 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578888999988888777663
Done!