RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1930
(195 letters)
>gnl|CDD|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3. The Monovalent
Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36)The
CPA1 family is a large family of proteins derived from
Gram-positive and Gram-negative bacteria, blue green
bacteria, yeast, plants and animals.Transporters from
eukaryotes have been functionally characterized, and all
of these catalyze Na+:H+ exchange. Their primary
physiological functions may be in(1) cytoplasmic pH
regulation, extruding the H+ generated during
metabolism, and (2) salt tolerance (in plants), due to
Na+ uptake into vacuoles.This model is specific for the
eukaryotic members members of this family [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 559
Score = 218 bits (557), Expect = 1e-68
Identities = 90/159 (56%), Positives = 121/159 (76%)
Query: 36 VLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVI 95
VLY+ F + + V VD+ G ASFFVV GG ++GV++GFL F+TRFT+ +R I
Sbjct: 179 VLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHIRQI 238
Query: 96 EPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSS 155
EP+F+F+++YL+YL AE H+SGILA+ FCGITMK YVEAN+S +S TT+KY MKMLSS
Sbjct: 239 EPLFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSL 298
Query: 156 SETIIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTLG 194
SET+IF+FLG+S +++ H WN AFV+ T+ FC +YR LG
Sbjct: 299 SETLIFIFLGVSLVTENHEWNWAFVVATLSFCVIYRVLG 337
>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family. Na/H
antiporters are key transporters in maintaining the pH
of actively metabolising cells. The molecular mechanisms
of antiport are unclear. These antiporters contain 10-12
transmembrane regions (M) at the amino-terminus and a
large cytoplasmic region at the carboxyl terminus. The
transmembrane regions M3-M12 share identity with other
members of the family. The M6 and M7 regions are highly
conserved. Thus, this is thought to be the region that
is involved in the transport of sodium and hydrogen
ions. The cytoplasmic region has little similarity
throughout the family.
Length = 370
Score = 111 bits (280), Expect = 1e-29
Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 13/161 (8%)
Query: 36 VLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVI 95
VL + A +G DL L F VVA+GG ++G+++G+L +TRFT+ R +
Sbjct: 155 VLLAVLLALAGVGGL----SDLGLLLLIFLVVALGGLLLGLVFGWLLRLITRFTSGDREL 210
Query: 96 EPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEAN-ISHKSHTTVKYAMKMLSS 154
E + + +A LA L AE+ +SGIL G+ + NY AN +S K
Sbjct: 211 EVLLVLALALLAALLAELLGLSGILGAFLAGLVLSNYAFANELSEKLE-------PFGYG 263
Query: 155 SSETIIFMFLGIST-ISDAHVWNTAFVILTIFFCSLYRTLG 194
+ F+ +G+S +S + V+L + L + LG
Sbjct: 264 LFLPLFFVSVGLSLDLSSLLLSLLLLVLLLLVAILLGKLLG 304
>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic
ion transport and metabolism].
Length = 429
Score = 69.6 bits (171), Expect = 3e-14
Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 9/141 (6%)
Query: 56 DLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEV----RVIEPIFIFVMAYLAYLTA 111
L L F + A+GG ++G++ G+L G + R + ++E + ++A+ AYL A
Sbjct: 182 SLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAFAAYLLA 241
Query: 112 EIFHMSGILAITFCGITMKNYVEANISHKSH-TTVKYAMKMLSSSSETIIFMFLG----I 166
E +SGILA+ G+ + V N+S S + ++L ++F+ LG +
Sbjct: 242 EALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPL 301
Query: 167 STISDAHVWNTAFVILTIFFC 187
S + + ++ +
Sbjct: 302 SLLLALGLLGLLVALVAVLLA 322
>gnl|CDD|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form. The
Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC
2.A.36) The CPA1 family is a large family of proteins
derived from Gram-positive and Gram-negative bacteria,
blue green bacteria, yeast, plants and animals.
Transporters from eukaryotes have been functionally
characterized, and all of these catalyze Na+:H+
exchange. Their primary physiological functions may be
in (1) cytoplasmic pH regulation, extruding the H+
generated during metabolism, and (2) salt tolerance (in
plants), due to Na+ uptake into vacuoles. This model is
specific for the bacterial members of this family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 525
Score = 56.0 bits (135), Expect = 1e-09
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 55 VDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIF 114
D L+ F VV VGG G+ G+L + R + ++E + + +L AE F
Sbjct: 169 FDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDDPLVEIALTILAPFAGFLLAERF 228
Query: 115 HMSGILAITFCGITMKNY-VEANISHKSHTTVKYAMKMLSSSSETIIFMFLGIST 168
H SG++A+ G+ + NY + ++S + ++ IIF+ +G+ T
Sbjct: 229 HFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQT 283
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 47.7 bits (114), Expect = 9e-07
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K ++K E K +K+KKKKK+KKK KK+KKK ++
Sbjct: 381 KPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 41.5 bits (98), Expect = 1e-04
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K + + KKK+++KK +K+KKKKK+KKK K+
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKKKKKRKKKGKK 407
Score = 36.1 bits (84), Expect = 0.007
Identities = 19/36 (52%), Positives = 27/36 (75%), Gaps = 3/36 (8%)
Query: 2 KLKRRKERENKKK--KKKKKKKKKKKKKKKKKKKKR 35
+L +R E E K+K K KKK+++KK +K+KKKKKR
Sbjct: 367 ELNKRIE-EIKEKYPKPPKKKREEKKPQKRKKKKKR 401
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 46.1 bits (110), Expect = 3e-06
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
L +R E++ K+K+K K KK+ + K K++K
Sbjct: 396 LAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRK 427
Score = 46.1 bits (110), Expect = 4e-06
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K E K+K+K+K K KK+ + K K+R
Sbjct: 398 KRAEKKEKEKEKPKVKKRHRDTKNIGKRR 426
Score = 45.7 bits (109), Expect = 4e-06
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K +R KK+K+K+K K KK+ + K KR
Sbjct: 394 KVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKR 425
Score = 44.9 bits (107), Expect = 8e-06
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
KR +++E +K+K K KK+ + K K++K
Sbjct: 396 LAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKP 428
Score = 44.5 bits (106), Expect = 1e-05
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
K K+ K+ +KK+K+K+K K KK+ + K +
Sbjct: 387 KTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNI 422
Score = 43.4 bits (103), Expect = 2e-05
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K +KE+E +K K KK+ + K K++K
Sbjct: 398 KRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 43.4 bits (103), Expect = 3e-05
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K+ ++ + +K+K+K K KK+ + K K+++
Sbjct: 394 KVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRK 427
Score = 43.0 bits (102), Expect = 4e-05
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 2 KLKRRKERENKKKKKK---KKKKKKKKKKKKKKKKKR 35
K K E++ K KK K+ +KK+K+K+K K KKR
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKR 415
Score = 41.1 bits (97), Expect = 1e-04
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K + ++ K+ +KK+K+K+K K KK+ +
Sbjct: 386 KKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDT 419
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 43.7 bits (103), Expect = 1e-05
Identities = 18/28 (64%), Positives = 25/28 (89%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKR 35
E+++KKKK + K++KKKKK+KKKKKKR
Sbjct: 141 EKKHKKKKHEDDKERKKKKKEKKKKKKR 168
Score = 40.6 bits (95), Expect = 1e-04
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
K E K KKKK + K++KKKKK+KKKK+
Sbjct: 138 KGHEKKHKKKKHEDDKERKKKKKEKKKKKK 167
Score = 37.1 bits (86), Expect = 0.002
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKK 29
K ++K+ E+ K++KKKKK+KKKKKK+
Sbjct: 142 KKHKKKKHEDDKERKKKKKEKKKKKKRH 169
Score = 36.0 bits (83), Expect = 0.005
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKK 30
K +K++ K++KKKKK+KKKKKK+
Sbjct: 143 KHKKKKHEDDKERKKKKKEKKKKKKRH 169
Score = 35.6 bits (82), Expect = 0.007
Identities = 14/28 (50%), Positives = 24/28 (85%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKK 31
K+ K+++++ K++KKKKK+KKKKKK+
Sbjct: 142 KKHKKKKHEDDKERKKKKKEKKKKKKRH 169
Score = 28.6 bits (64), Expect = 1.3
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 6/32 (18%)
Query: 10 ENKKKKKKKKKKKKKKK------KKKKKKKKR 35
+++ K +KK KKKK KKKKK+KK+
Sbjct: 133 DSEGLKGHEKKHKKKKHEDDKERKKKKKEKKK 164
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 41.2 bits (97), Expect = 5e-05
Identities = 19/34 (55%), Positives = 26/34 (76%), Gaps = 2/34 (5%)
Query: 4 KRRKERE--NKKKKKKKKKKKKKKKKKKKKKKKR 35
K+RK+ E KK+ K++KKK+KKKKKKK KK +
Sbjct: 75 KKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNK 108
Score = 40.8 bits (96), Expect = 7e-05
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K + +K ++ +K KK+ K++KKK+KKKKKKK
Sbjct: 70 QKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKA 103
Score = 40.0 bits (94), Expect = 1e-04
Identities = 18/37 (48%), Positives = 27/37 (72%), Gaps = 6/37 (16%)
Query: 4 KRRKERENK------KKKKKKKKKKKKKKKKKKKKKK 34
++R+E++ K KK+ K++KKK+KKKKKKK KK
Sbjct: 70 QKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKG 106
Score = 39.3 bits (92), Expect = 2e-04
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K+R +R+ KK+KKKKKKK KK KK++K+ +
Sbjct: 84 AKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSK 116
Score = 38.9 bits (91), Expect = 3e-04
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K K+R ++KKK+KKKKKKK KK KK++K
Sbjct: 82 KTAKKRAKRQKKKQKKKKKKKAKKGNKKEEK 112
Score = 35.8 bits (83), Expect = 0.005
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
++K E K+K ++K KK+ K++KKK+KKK+
Sbjct: 69 QQKREEKKRKDEEKTAKKRAKRQKKKQKKKK 99
Score = 33.9 bits (78), Expect = 0.017
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
+ KR+K+++ KKKKKK KK KK++K+ K
Sbjct: 87 RAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSS 118
Score = 28.5 bits (64), Expect = 1.2
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 31/61 (50%)
Query: 5 RRKERE-----NKK--------------------------KKKKKKKKKKKKKKKKKKKK 33
RR+E E ++K KK+ K++KKK+KKKKKKK K
Sbjct: 45 RRREYERLELMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAK 104
Query: 34 K 34
K
Sbjct: 105 K 105
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 40.7 bits (96), Expect = 7e-05
Identities = 13/32 (40%), Positives = 25/32 (78%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
+ +R KER K+K+ +K ++KK K+++K+K+K
Sbjct: 99 RRERTKERAEKEKRTRKNREKKFKRRQKEKEK 130
Score = 38.4 bits (90), Expect = 4e-04
Identities = 11/35 (31%), Positives = 27/35 (77%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ L+ R+ER ++ +K+K+ +K ++KK K+++K++
Sbjct: 94 IALRLRRERTKERAEKEKRTRKNREKKFKRRQKEK 128
Score = 37.3 bits (87), Expect = 0.001
Identities = 11/35 (31%), Positives = 28/35 (80%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
++L+R + +E +K+K+ +K ++KK K+++K+K++
Sbjct: 96 LRLRRERTKERAEKEKRTRKNREKKFKRRQKEKEK 130
Score = 35.7 bits (83), Expect = 0.004
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
++ R RE K++ +K+K+ +K ++KK K++
Sbjct: 92 RRIALRLRRERTKERAEKEKRTRKNREKKFKRR 124
Score = 35.3 bits (82), Expect = 0.005
Identities = 11/34 (32%), Positives = 23/34 (67%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K +R R +++ K++ +K+K+ +K ++KK KR
Sbjct: 90 KKRRIALRLRRERTKERAEKEKRTRKNREKKFKR 123
Score = 30.7 bits (70), Expect = 0.20
Identities = 10/34 (29%), Positives = 23/34 (67%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K+++ RE +KKKK+K+ KK++ + ++++
Sbjct: 70 KVEKELLREKEKKKKRKRPGKKRRIALRLRRERT 103
Score = 30.7 bits (70), Expect = 0.23
Identities = 8/43 (18%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 2 KLKRRKERENKKK--KKKKKKKKKKKKKKKKKKKKRVLYHMFE 42
+ K++++R KK+ + ++++ K++ +K+K+ ++ F+
Sbjct: 80 EKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFK 122
Score = 30.3 bits (69), Expect = 0.31
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ E+E ++K+KKKK+K+ KK++ + R
Sbjct: 69 AKVEKELLREKEKKKKRKRPGKKRRIALRLR 99
Score = 27.2 bits (61), Expect = 3.4
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
K+ K +K+ ++K+KKKK+K+ KK+R+
Sbjct: 65 KKHNAKVEKELLREKEKKKKRKRPGKKRRI 94
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 40.4 bits (95), Expect = 8e-05
Identities = 19/29 (65%), Positives = 23/29 (79%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKR 35
KE+ +KK+KKKKKKKKKKK KK KK+
Sbjct: 106 KEKAKQKKQKKKKKKKKKKKTSKKAAKKK 134
Score = 40.4 bits (95), Expect = 1e-04
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
++ + K ++ K+KKKKKKKKKKK KK KKKK
Sbjct: 103 QVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 38.5 bits (90), Expect = 4e-04
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+K+ + + K+KK+KKKKKKKKKKK KK K
Sbjct: 101 VKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAK 132
Score = 38.1 bits (89), Expect = 5e-04
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K+ ++ +E K+KK+KKKKKKKKKKK KK
Sbjct: 99 KIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAA 131
Score = 37.7 bits (88), Expect = 9e-04
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKK 31
+K K +++++ KKKKKKKKKK KK KKKK
Sbjct: 105 LKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 35.8 bits (83), Expect = 0.004
Identities = 17/25 (68%), Positives = 21/25 (84%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRV 36
K+K K+KK+KKKKKKKKKKK K+
Sbjct: 106 KEKAKQKKQKKKKKKKKKKKTSKKA 130
Score = 34.7 bits (80), Expect = 0.011
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 9 RENKKKKKKKKKKKKKKKKKKKKKKKR 35
++ K+K K+KK+KKKKKKKKKKK +
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSK 128
Score = 32.7 bits (75), Expect = 0.041
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKRV 36
K+ K+K K+KK+KKKKKKKKK+
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKK 125
Score = 27.7 bits (62), Expect = 2.1
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 10 ENKKKKKKKKKKKKKKKKKKKKKKKRV 36
E +K K+ K+K K+KK+KKKKKK+
Sbjct: 96 EEQKIVKQVLKEKAKQKKQKKKKKKKK 122
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 40.8 bits (96), Expect = 1e-04
Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K +KE E K+K K KKKK KKKK K K KK
Sbjct: 73 KVKKEYEEKQKWKWKKKKSKKKKDKDKDKKD 103
Score = 37.7 bits (88), Expect = 0.001
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K+K+ E + K K KKKK KKKK K K KK K
Sbjct: 73 KVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDK 105
Score = 37.7 bits (88), Expect = 0.001
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
K + +++ KKKK K K KK KK K +KK
Sbjct: 83 KWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDE 115
Score = 36.2 bits (84), Expect = 0.004
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 3 LKRRKERENK----KKKKKKKKKKKKKKKKKKKKKK 34
L E+ K K+K K KKKK KKKK K K KK
Sbjct: 67 LAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKK 102
Score = 35.4 bits (82), Expect = 0.008
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
++ K ++ K KKKK K K KK KK K +K
Sbjct: 82 QKWKWKKKKSKKKKDKDKDKKDDKKDDKSEK 112
Score = 35.1 bits (81), Expect = 0.009
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K K++K ++ K K K KK KK K +KK +K+
Sbjct: 85 KWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEA 118
Score = 35.1 bits (81), Expect = 0.010
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K K +K++ KKK K K KK KK K +KK +
Sbjct: 83 KWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDE 115
Score = 34.3 bits (79), Expect = 0.017
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+++K + KKK KKKK K K KK KK K
Sbjct: 80 EKQKWKWKKKKSKKKKDKDKDKKDDKKDDKS 110
Score = 34.3 bits (79), Expect = 0.017
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K K +K+++ K KK KK K +KK +K+ + +
Sbjct: 88 KKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDK 121
Score = 34.3 bits (79), Expect = 0.021
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K++ + + KK KKKK K K KK KK K +
Sbjct: 81 KQKWKWKKKKSKKKKDKDKDKKDDKKDDKSE 111
Score = 32.7 bits (75), Expect = 0.058
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K K+ K++++K K KK KK K +KK +K+ +
Sbjct: 87 KKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAE 119
Score = 32.4 bits (74), Expect = 0.085
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K ++K+ ++K KK KK K +KK +K+ + K
Sbjct: 88 KKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDK 121
Score = 31.2 bits (71), Expect = 0.18
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K K E K KK+ ++K+K K KKKK KKKK
Sbjct: 63 KKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKK 95
Score = 29.3 bits (66), Expect = 0.86
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K++KE + +K KK+ ++K+K K KKKK K
Sbjct: 61 KKKKKELAEEIEKVKKEYEEKQKWKWKKKKSK 92
Score = 28.9 bits (65), Expect = 1.2
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKK 34
K+++ K KK K +KK +K+ + K +
Sbjct: 97 KDKDKKDDKKDDKSEKKDEKEAEDKLED 124
Score = 28.5 bits (64), Expect = 1.6
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Query: 5 RRKERENKKKKKKKKK---KKKKKKKKKKKKKK 34
++K++E ++ +K KK +K+K K KKKK KK
Sbjct: 61 KKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKK 93
Score = 28.5 bits (64), Expect = 1.6
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K++++ KK K +KK +K+ + K + +
Sbjct: 99 KDKKDDKKDDKSEKKDEKEAEDKLEDLTK 127
Score = 26.6 bits (59), Expect = 6.5
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K++K+ ++ +K KK+ ++K+K K KKKK +
Sbjct: 60 AKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSK 92
Score = 26.6 bits (59), Expect = 8.4
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K + ++++KK K +KK +K+ + K + K
Sbjct: 97 KDKDKKDDKKDDKSEKKDEKEAEDKLEDLTK 127
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 40.9 bits (96), Expect = 1e-04
Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
E E KK+KKKKK+ KK+KK+KK KK+K V
Sbjct: 149 VEEEEKKEKKKKKEVKKEKKEKKDKKEKMV 178
Score = 39.7 bits (93), Expect = 3e-04
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K + +KE++ KK KK+K + K KKKKKKKKK+
Sbjct: 159 KKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 38.2 bits (89), Expect = 8e-04
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 9/43 (20%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKK---------KKKKKKKKR 35
+ + +KE++ KK+ KK+KK+KK KK KKKKKKKK+
Sbjct: 150 EEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKK 192
Score = 38.2 bits (89), Expect = 0.001
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K KE E ++++KK+KKKKK+ KK+KK+KK +
Sbjct: 140 TAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDK 173
Score = 37.8 bits (88), Expect = 0.001
Identities = 18/33 (54%), Positives = 27/33 (81%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K+++ E E ++KK+KKKKK+ KK+KK+KK KK
Sbjct: 142 KVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKK 174
Score = 35.8 bits (83), Expect = 0.006
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K + E +KK+KKKKK+ KK+KK+KK KK+
Sbjct: 142 KVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKE 175
Score = 35.5 bits (82), Expect = 0.007
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
++ +++KK+KKKKK+ KK+KK+KK K+
Sbjct: 143 VEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKK 174
Score = 35.5 bits (82), Expect = 0.008
Identities = 14/33 (42%), Positives = 26/33 (78%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ + E+E + ++++KK+KKKKK+ KK+KK+K
Sbjct: 138 ETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEK 170
Score = 32.4 bits (74), Expect = 0.087
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
K + K+ + ++++KK+KKKKK+ KK+K+
Sbjct: 137 KETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKE 169
Score = 29.7 bits (67), Expect = 0.78
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
KE K +K+ + ++++KK+KKKKK+ K+
Sbjct: 136 EKETTAKVEKEAEVEEEEKKEKKKKKEVKK 165
Score = 29.3 bits (66), Expect = 1.0
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
+ K +K+ + ++++KK+KKKKK V
Sbjct: 135 SEKETTAKVEKEAEVEEEEKKEKKKKKEV 163
Score = 28.9 bits (65), Expect = 1.3
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+L E K+ K +K+ + ++++KK+KKK
Sbjct: 127 ELGSESETSEKETTAKVEKEAEVEEEEKKEKKK 159
Score = 28.9 bits (65), Expect = 1.4
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
++ +K+ + ++++KK+KKKKK+ KK
Sbjct: 136 EKETTAKVEKEAEVEEEEKKEKKKKKEVKKE 166
Score = 28.1 bits (63), Expect = 2.3
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ E + K +K+ + ++++KK+KKKK
Sbjct: 133 ETSEKETTAKVEKEAEVEEEEKKEKKKK 160
Score = 27.8 bits (62), Expect = 2.9
Identities = 7/29 (24%), Positives = 20/29 (68%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ ++K+ K +K+ + ++++KK+KK+
Sbjct: 131 ESETSEKETTAKVEKEAEVEEEEKKEKKK 159
Score = 27.8 bits (62), Expect = 3.6
Identities = 9/31 (29%), Positives = 21/31 (67%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ ++ K +K+ + ++++KK+KKKKK+
Sbjct: 133 ETSEKETTAKVEKEAEVEEEEKKEKKKKKEV 163
Score = 27.4 bits (61), Expect = 4.2
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
E+E K +K+ + ++++KK+KKKKK+
Sbjct: 132 SETSEKETTAKVEKEAEVEEEEKKEKKKKKE 162
>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain.
This presumed domain is found at the N-terminus of
Ribosomal L30 proteins and has been termed RL30NT or
NUC018.
Length = 71
Score = 38.0 bits (89), Expect = 2e-04
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
LK+RK E + K+ KK+ KK +KKK+K
Sbjct: 2 LLKKRKRNEKLRAKRAKKRAAKKAARKKKRKL 33
Score = 26.4 bits (59), Expect = 2.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKK 29
+ KR K+R KK +KKK+K K+ +K
Sbjct: 13 RAKRAKKRAAKKAARKKKRKLIFKRAEK 40
Score = 25.7 bits (57), Expect = 5.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 11 NKKKKKKKKKKKKKKKKKKKKKKKRV 36
+ KK+K+ +K + K+ KK+ KK
Sbjct: 1 SLLKKRKRNEKLRAKRAKKRAAKKAA 26
>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe. JAK1 is a
tyrosine kinase protein essential in signaling type I
and type II cytokines. It interacts with the gamma chain
of type I cytokine receptors to elicit signals from the
IL-2 receptor family, the IL-4 receptor family, the
gp130 receptor family, ciliary neurotrophic factor
receptor (CNTF-R), neurotrophin-1 receptor (NNT-1R) and
Leptin-R). It also is involved in transducing a signal
by type I (IFN-alpha/beta) and type II (IFN-gamma)
interferons, and members of the IL-10 family via type II
cytokine receptors. JAK (also called Just Another
Kinase) is a family of intracellular, non-receptor
tyrosine kinases that transduce cytokine-mediated
signals via the JAK-STAT pathway. The JAK family in
mammals consists of 4 members: JAK1, JAK2, JAK3 and
TYK2. JAKs are composed of seven JAK homology (JH)
domains (JH1-JH7) . The C-terminal JH1 domain is the
main catalytic domain, followed by JH2, which is often
referred to as a pseudokinase domain, followed by
JH3-JH4 which is homologous to the SH2 domain, and
lastly JH5-JH7 which is a FERM domain. Named after
Janus, the two-faced Roman god of doorways, JAKs possess
two near-identical phosphate-transferring domains; one
which displays the kinase activity (JH1), while the
other negatively regulates the kinase activity of the
first (JH2). The FERM domain has a cloverleaf tripart
structure (FERM_N, FERM_M, FERM_C/N, alpha-, and
C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The
C-lobe/F3 within the FERM domain is part of the PH
domain family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved
in signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 198
Score = 40.2 bits (94), Expect = 2e-04
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTEMGH 49
KKKK K KK K K KK + KKK R ++ F + E+ H
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAREGWNNFSYFPEITH 128
>gnl|CDD|235410 PRK05326, PRK05326, potassium/proton antiporter; Reviewed.
Length = 562
Score = 40.6 bits (96), Expect = 2e-04
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 61 LASFFVVAVGGTVIGVIWGFLTGFVTRFTN-EVRVIEPIFIFVMAYLAYLTAEIFHMSGI 119
L F G +IG++ G+L + + PI + A L + SG
Sbjct: 188 LLLFLQQFGLGALIGLLGGWLLVQLLNRIALPAEGLYPILVLAGALLIFALTAALGGSGF 247
Query: 120 LAITFCGITMKNYVEANISHKSHT 143
LA+ G+ + N I H+
Sbjct: 248 LAVYLAGLVLGN---RPIRHRHSI 268
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 39.0 bits (92), Expect = 3e-04
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLY 38
K K E +KK +K K K +KKK KK++ K L+
Sbjct: 66 KELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPRLF 100
Score = 37.5 bits (88), Expect = 0.001
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K + E+ KK +K K K +KKK KK++ K +
Sbjct: 66 KELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 37.1 bits (87), Expect = 0.001
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
K + + + +KK +K K K +KKK KK++ K R+
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPRL 99
Score = 36.7 bits (86), Expect = 0.002
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
++ ++E K +K +KK +K K K +KKK K
Sbjct: 58 LEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAK 91
Score = 36.0 bits (84), Expect = 0.004
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
LK ++ E K +K K K +KKK KK++ K + VL
Sbjct: 68 LKAWEKAEKKAEKAKAKAEKKKAKKEEPKPRLFVL 102
Score = 29.8 bits (68), Expect = 0.58
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
LK E KK+ K +K +KK +K K K
Sbjct: 54 LKESLEAALLDKKELKAWEKAEKKAEKAKAKAE 86
>gnl|CDD|225802 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a
unique C-terminal domain [Inorganic ion transport and
metabolism].
Length = 574
Score = 40.1 bits (94), Expect = 4e-04
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 6/111 (5%)
Query: 57 LLSGLASFFVVAVG-GTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFH 115
L G F+ G G ++G+ G L + N + PI L +
Sbjct: 182 LSWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRINLDSGLYPILALAGGLLIFSLTGAIG 241
Query: 116 MSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGI 166
SGILA+ G+ + N ++ + L+ ++ ++F+ LG+
Sbjct: 242 GSGILAVYLAGL-----LLGNRPIRARHGILRFFDGLAWLAQILMFLVLGL 287
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 39.7 bits (93), Expect = 4e-04
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
K +R+ER KKK+ K K K+ KKKKKK
Sbjct: 76 KELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAA 110
Score = 38.9 bits (91), Expect = 6e-04
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
++ +RE + KKKK+ K K K+ KKKKKK
Sbjct: 75 EKELQREERLKKKKRVKTKAYKEPTKKKKKK 105
Score = 37.0 bits (86), Expect = 0.003
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
E+E +++++ KKKK+ K K K+ KK+
Sbjct: 74 GEKELQREERLKKKKRVKTKAYKEPTKKKK 103
Score = 33.5 bits (77), Expect = 0.042
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKK 30
+R KERE ++KK + K +K+K+KKK+K
Sbjct: 155 ERLKEREIRRKKIQAKARKRKEKKKEK 181
Score = 32.7 bits (75), Expect = 0.068
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+LK++K + K K+ KKKKKK K K
Sbjct: 83 RLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKA 115
Score = 31.6 bits (72), Expect = 0.21
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 2 KLKRRKERENKKKKKKKKK-----KKKKKKKKKKKKKKR 35
K + K + KKKKKK K + KKK +R
Sbjct: 88 KRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSER 126
Score = 31.2 bits (71), Expect = 0.22
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKK 27
+LK R+ R K + K +K+K+KKK+K
Sbjct: 156 RLKEREIRRKKIQAKARKRKEKKKEK 181
Score = 29.7 bits (67), Expect = 0.72
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKK 34
E E +K+ +++++ KKKK+ K K K+
Sbjct: 71 EEEGEKELQREERLKKKKRVKTKAYKE 97
Score = 29.3 bits (66), Expect = 0.99
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K++K+++ K K + KKK ++
Sbjct: 98 PTKKKKKKDPTAAKSPKAAAPRPKKKSERISWA 130
Score = 28.9 bits (65), Expect = 1.7
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
K K++K+ K K + KKK ++
Sbjct: 99 TKKKKKKDPTAAKSPKAAAPRPKKKSERISWAP 131
Score = 28.5 bits (64), Expect = 2.0
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRVL 37
K+ +++++ KKKK+ K K K+
Sbjct: 76 KELQREERLKKKKRVKTKAYKEPTKK 101
Score = 27.7 bits (62), Expect = 3.6
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
+ E +K+ +++++ KKKK+ K K K
Sbjct: 68 SDDEEEGEKELQREERLKKKKRVKTKAYKEPT 99
Score = 27.3 bits (61), Expect = 4.1
Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 4 KRRKERENKKK-----KKKKKKKKKKKKKKKKKKKKRVLYHM 40
R +NK+ K+++ ++KK + K +K+K+K+ +
Sbjct: 142 SRSSTVQNKEATHERLKEREIRRKKIQAKARKRKEKKKEKEL 183
Score = 27.3 bits (61), Expect = 4.9
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
K++K+ K K + KKK ++ +L
Sbjct: 101 KKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLL 134
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 39.5 bits (93), Expect = 6e-04
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ K K+RE +KK+KKKK KKK+++++++K
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKE 449
Score = 36.1 bits (84), Expect = 0.009
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
L K+ K KK +K +KK++++KK+KKKK
Sbjct: 402 LTGSKKATKKIKKIVEKAEKKREEEKKEKKKK 433
Score = 34.9 bits (81), Expect = 0.021
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K+K+ E+ KK++++KK+KKKK KKK+++
Sbjct: 411 KIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEE 443
Score = 34.9 bits (81), Expect = 0.021
Identities = 13/31 (41%), Positives = 25/31 (80%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K+R+E + +KKKK KKK+++++++K+KK
Sbjct: 421 KKREEEKKEKKKKAFAGKKKEEEEEEEKEKK 451
Score = 34.5 bits (80), Expect = 0.023
Identities = 11/35 (31%), Positives = 25/35 (71%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
K+ + E++ +++KK+KKKK KKK++++++
Sbjct: 414 KIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEK 448
Score = 34.5 bits (80), Expect = 0.024
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
+ KR +E++ KKKK KKK+++++++K+KK+
Sbjct: 419 AEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454
Score = 34.5 bits (80), Expect = 0.028
Identities = 13/34 (38%), Positives = 26/34 (76%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K ++++E E K+KKKK KKK+++++++K+K
Sbjct: 417 EKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEK 450
Score = 34.1 bits (79), Expect = 0.035
Identities = 11/35 (31%), Positives = 25/35 (71%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
K + +++E KKK KKK+++++++K+KK++
Sbjct: 421 KKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
Score = 34.1 bits (79), Expect = 0.040
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K +K E +KK++++KK+KKKK KKK+
Sbjct: 411 KIKKIVEKAEKKREEEKKEKKKKAFAGKKKEE 442
Score = 33.4 bits (77), Expect = 0.061
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K+ ++ K +K +KK++++KK+KKKK
Sbjct: 406 KKATKKIKKIVEKAEKKREEEKKEKKKKAFAG 437
Score = 32.2 bits (74), Expect = 0.14
Identities = 10/34 (29%), Positives = 26/34 (76%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ + +KE++ K KKK+++++++K+KK+++K
Sbjct: 422 KREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
Score = 31.8 bits (73), Expect = 0.17
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K K + ++++KK+KKKK KKK+++++
Sbjct: 413 KKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEE 445
Score = 31.8 bits (73), Expect = 0.18
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K+ K+ K +KK++++KK+KKKK KKK
Sbjct: 410 KKIKKIVEKAEKKREEEKKEKKKKAFAGKKK 440
Score = 31.8 bits (73), Expect = 0.19
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTE 46
++ ++ KK KK +K +KK++++KK+KKK+ + E
Sbjct: 399 IEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEE 444
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 38.8 bits (91), Expect = 6e-04
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ K+R EN KK+K KK KKKKK KKK +
Sbjct: 175 ERQKKR--EENLKKRKDDKKNKKKKKAKKKGRIL 206
Score = 38.1 bits (89), Expect = 0.001
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
K +R+K+RE KK+K KK KKKKK KKK +
Sbjct: 173 KAERQKKREENLKKRKDDKKNKKKKKAKKKGR 204
Score = 34.6 bits (80), Expect = 0.019
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
++ +RRK + K +KK+K+K+ KKK+ +K + + V
Sbjct: 8 LEQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEV 43
Score = 33.4 bits (77), Expect = 0.045
Identities = 11/32 (34%), Positives = 23/32 (71%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
R E +++K++++K +KK+K+K+ KKK+
Sbjct: 4 REALLEQRRRKREQRKARKKQKRKEAKKKEDA 35
Score = 32.3 bits (74), Expect = 0.096
Identities = 10/37 (27%), Positives = 26/37 (70%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
+ ++R++R+ +KK+K+K+ KKK+ +K + ++ +
Sbjct: 10 QRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNE 46
Score = 30.7 bits (70), Expect = 0.29
Identities = 15/33 (45%), Positives = 28/33 (84%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
LKR+++++ K KK+ K++K+K +KKK +++KKR
Sbjct: 148 LKRKEKQKKKSKKEWKERKEKVEKKKAERQKKR 180
Score = 30.7 bits (70), Expect = 0.30
Identities = 18/36 (50%), Positives = 26/36 (72%), Gaps = 2/36 (5%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKK--KKKRVL 37
K++ ER+ K+++ KK+K KK KKKKK KK R+L
Sbjct: 171 KKKAERQKKREENLKKRKDDKKNKKKKKAKKKGRIL 206
Score = 29.6 bits (67), Expect = 0.86
Identities = 10/32 (31%), Positives = 23/32 (71%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
R+ ++++K++++K +KK+K+K+ KKK
Sbjct: 1 PSSREALLEQRRRKREQRKARKKQKRKEAKKK 32
Score = 28.8 bits (65), Expect = 1.3
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRVLYHM 40
KK K+K+K+KKK KK+ K++K++V
Sbjct: 145 KKALKRKEKQKKKSKKEWKERKEKVEKKK 173
Score = 26.9 bits (60), Expect = 5.9
Identities = 8/29 (27%), Positives = 22/29 (75%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKR 35
RE +++++K++++K +KK+K+K+ +
Sbjct: 2 SSREALLEQRRRKREQRKARKKQKRKEAK 30
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 37.6 bits (87), Expect = 7e-04
Identities = 16/26 (61%), Positives = 16/26 (61%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKK 33
E K KKKKKK KK KK KK KK
Sbjct: 95 EPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 36.4 bits (84), Expect = 0.002
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKK 34
K KKKKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 36.0 bits (83), Expect = 0.002
Identities = 16/25 (64%), Positives = 17/25 (68%)
Query: 10 ENKKKKKKKKKKKKKKKKKKKKKKK 34
E +K KKKKKK KK KK KK KK
Sbjct: 95 EPTEKPKKKKKKSKKTKKPKKSSKK 119
Score = 34.1 bits (78), Expect = 0.013
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 15 KKKKKKKKKKKKKKKKKKKKR 35
K KKKKKK KK KK KK K+
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKK 119
Score = 32.5 bits (74), Expect = 0.040
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKK 28
K ++ KKK KK KK KK KK
Sbjct: 97 TEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 26.4 bits (58), Expect = 5.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 2 KLKRRKERENKKKKKKKKKKKK 23
K K++K++ K KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 38.7 bits (90), Expect = 0.001
Identities = 15/33 (45%), Positives = 26/33 (78%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K K KE +N+ K+++K+K++ K++KKKKK+K
Sbjct: 91 KTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEK 123
Score = 36.8 bits (85), Expect = 0.005
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K + + E+ K+++K+K++ K++KKKKK+K K
Sbjct: 93 KPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKE 126
Score = 36.0 bits (83), Expect = 0.008
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K +E +K+K++ K++KKKKK+K K++ K
Sbjct: 99 KNESGKEEEKEKEQVKEEKKKKKEKPKEEPK 129
Score = 35.6 bits (82), Expect = 0.010
Identities = 9/34 (26%), Positives = 22/34 (64%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ + + K+++K+K++ K++KKKKK++
Sbjct: 90 AKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEK 123
Score = 35.6 bits (82), Expect = 0.011
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K K+++K+K++ K++KKKKK+K K+
Sbjct: 99 KNESGKEEEKEKEQVKEEKKKKKEKPKEE 127
Score = 35.6 bits (82), Expect = 0.011
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ E K+K++ K++KKKKK+K K++ K R
Sbjct: 100 NESGKEEEKEKEQVKEEKKKKKEKPKEEPKDR 131
Score = 34.9 bits (80), Expect = 0.022
Identities = 11/32 (34%), Positives = 24/32 (75%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ +++ + K++KKKKK+K K++ K +K K++
Sbjct: 106 EEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEA 137
Score = 34.5 bits (79), Expect = 0.025
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K K+ K +E K +K K++ K+K+ K+K+K+K
Sbjct: 118 KKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEK 150
Score = 34.5 bits (79), Expect = 0.027
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K +++ + +KKKKK+K K++ K +K K++ K
Sbjct: 108 KEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKE 139
Score = 34.5 bits (79), Expect = 0.030
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K RK +E K+K+ K+K+K+K+KK ++ + R
Sbjct: 129 KDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDR 160
Score = 34.5 bits (79), Expect = 0.031
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
++ KE +K K++ K+K+ K+K+K+K+K+V
Sbjct: 122 EKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKV 154
Score = 34.1 bits (78), Expect = 0.035
Identities = 12/30 (40%), Positives = 23/30 (76%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
+ +E+E ++ K++KKKKK+K K++ K +K
Sbjct: 103 GKEEEKEKEQVKEEKKKKKEKPKEEPKDRK 132
Score = 33.7 bits (77), Expect = 0.043
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
KE E +K++ K++KKKKK+K K++ K ++
Sbjct: 104 KEEEKEKEQVKEEKKKKKEKPKEEPKDRKP 133
Score = 33.7 bits (77), Expect = 0.045
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
+ K + K + K+++K+K++ K++KKKK+
Sbjct: 88 PAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKE 122
Score = 33.7 bits (77), Expect = 0.053
Identities = 11/32 (34%), Positives = 24/32 (75%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ K+R+ K++ K+K+ K+K+K+K+KK ++
Sbjct: 126 EEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEP 157
Score = 33.3 bits (76), Expect = 0.070
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
R K R K KKK KKK+ +++K+++
Sbjct: 169 VRAKSRPKKPPKKKPPNKKKEPPEEEKQRQA 199
Score = 33.3 bits (76), Expect = 0.075
Identities = 8/32 (25%), Positives = 24/32 (75%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ KE+E +K+KK ++ + ++++KK+++ + +
Sbjct: 141 RPPKEKEKEKEKKVEEPRDREEEKKRERVRAK 172
Score = 32.9 bits (75), Expect = 0.092
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKK 33
K+RE + K + KK KKK KKK+
Sbjct: 162 EEKKRERVRAKSRPKKPPKKKPPNKKKEP 190
Score = 32.9 bits (75), Expect = 0.10
Identities = 12/30 (40%), Positives = 23/30 (76%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
++E + K++ K++KKKKK+K K++ K +K
Sbjct: 104 KEEEKEKEQVKEEKKKKKEKPKEEPKDRKP 133
Score = 32.2 bits (73), Expect = 0.14
Identities = 12/34 (35%), Positives = 25/34 (73%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ ++ + +E KKKKK+K K++ K +K K++ K++
Sbjct: 107 EKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEK 140
Score = 32.2 bits (73), Expect = 0.16
Identities = 9/31 (29%), Positives = 23/31 (74%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K ++E + K+ K+K+K+K+KK ++ + +++
Sbjct: 132 KPKEEAKEKRPPKEKEKEKEKKVEEPRDREE 162
Score = 32.2 bits (73), Expect = 0.18
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
R +E E K+++ + K + KK KKK KK+
Sbjct: 158 RDREEEKKRERVRAKSRPKKPPKKKPPNKKKE 189
Score = 31.8 bits (72), Expect = 0.19
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K + + E KKKK+K K++ K +K K++ K+KR
Sbjct: 110 KEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKR 141
Score = 31.8 bits (72), Expect = 0.21
Identities = 11/34 (32%), Positives = 24/34 (70%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K +++K++E K++ K +K K++ K+K+ K+K
Sbjct: 114 KEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKE 147
Score = 31.8 bits (72), Expect = 0.22
Identities = 10/34 (29%), Positives = 23/34 (67%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K ++ KE +K+ K+K+K+K+KK ++ + ++
Sbjct: 129 KDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREE 162
Score = 31.4 bits (71), Expect = 0.27
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
++ K R ++ KKK KKK+ +++K+++ ++ V
Sbjct: 169 VRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAV 204
Score = 31.4 bits (71), Expect = 0.28
Identities = 11/34 (32%), Positives = 24/34 (70%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K + ++E++ KK+K K++ K +K K++ K+K+
Sbjct: 110 KEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPP 143
Score = 31.0 bits (70), Expect = 0.40
Identities = 9/32 (28%), Positives = 23/32 (71%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ KE+E +KK ++ + ++++KK+++ + K R
Sbjct: 143 PKEKEKEKEKKVEEPRDREEEKKRERVRAKSR 174
Score = 31.0 bits (70), Expect = 0.40
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 2 KLKRR---KERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ K+R + + KK KKK KKK+ +++K++
Sbjct: 162 EEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQR 197
Score = 31.0 bits (70), Expect = 0.41
Identities = 11/32 (34%), Positives = 24/32 (75%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ KE+ K+K+K+K+KK ++ + ++++KKR
Sbjct: 135 EEAKEKRPPKEKEKEKEKKVEEPRDREEEKKR 166
Score = 31.0 bits (70), Expect = 0.41
Identities = 7/34 (20%), Positives = 19/34 (55%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K + K+ K + K+++K+K++ K+++
Sbjct: 84 GSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEK 117
Score = 30.6 bits (69), Expect = 0.51
Identities = 9/34 (26%), Positives = 23/34 (67%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K K + + K+K+K+K+KK ++ + ++++K+
Sbjct: 132 KPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKK 165
Score = 30.2 bits (68), Expect = 0.63
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ R E KK+++ + K + KK KKK K
Sbjct: 154 VEEPRDREEEKKRERVRAKSRPKKPPKKKPPNK 186
Score = 30.2 bits (68), Expect = 0.65
Identities = 9/31 (29%), Positives = 24/31 (77%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+R +E +K+K+KK ++ + ++++KK+++ R
Sbjct: 140 KRPPKEKEKEKEKKVEEPRDREEEKKRERVR 170
Score = 29.9 bits (67), Expect = 0.80
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K K + K+ K + K+++K+K++ K++KK+
Sbjct: 86 KGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKK 119
Score = 29.1 bits (65), Expect = 1.8
Identities = 9/34 (26%), Positives = 24/34 (70%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K KR + + K+K+KK ++ + ++++KK+++ +
Sbjct: 138 KEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRA 171
Score = 28.7 bits (64), Expect = 2.0
Identities = 10/33 (30%), Positives = 24/33 (72%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
+ K +K+K+K+KK ++ + ++++KK++RV
Sbjct: 137 AKEKRPPKEKEKEKEKKVEEPRDREEEKKRERV 169
Score = 28.3 bits (63), Expect = 2.8
Identities = 10/33 (30%), Positives = 26/33 (78%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K + +++R K+K+K+K+KK ++ + ++++KK+
Sbjct: 134 KEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKR 166
Score = 27.9 bits (62), Expect = 3.7
Identities = 8/33 (24%), Positives = 25/33 (75%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ K ++ + K+K+K+KK ++ + ++++KK+++
Sbjct: 136 EAKEKRPPKEKEKEKEKKVEEPRDREEEKKRER 168
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 38.1 bits (89), Expect = 0.001
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTE 46
K + E+ K KKKK K K K + + +
Sbjct: 194 KLKAEKAAKGGKKKKGKAKAKLNVGGANDDDDDYDGYDDDFYD 236
Score = 35.8 bits (83), Expect = 0.007
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTE 46
K KK K K ++K+K K++K+++ L + E E
Sbjct: 56 AKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPE 90
Score = 35.4 bits (82), Expect = 0.009
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
K + + K KK K K ++K+K K++K++K +
Sbjct: 49 KAKVAAKAKAKKALKAKIEEKEKAKREKEEKGL 81
Score = 35.0 bits (81), Expect = 0.013
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ + + K K KK K K ++K+K K++K+
Sbjct: 47 EEKAKVAAKAKAKKALKAKIEEKEKAKREKEE 78
Score = 34.6 bits (80), Expect = 0.017
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K ++ + K K KK K K ++K+K K+++
Sbjct: 45 KEEEKAKVAAKAKAKKALKAKIEEKEKAKREK 76
Score = 34.2 bits (79), Expect = 0.024
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ K + K K KK K K ++K+K K++K
Sbjct: 46 EEEKAKVAAKAKAKKALKAKIEEKEKAKREKE 77
Score = 34.2 bits (79), Expect = 0.027
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
+E + K K K KK K K ++K+K KR
Sbjct: 46 EEEKAKVAAKAKAKKALKAKIEEKEKAKRE 75
Score = 33.9 bits (78), Expect = 0.032
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
++ +E+ K K KK K K ++K+K K+
Sbjct: 44 EKEEEKAKVAAKAKAKKALKAKIEEKEKAKR 74
Score = 33.5 bits (77), Expect = 0.048
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKR 35
++ E +++K K K K KK K K +++
Sbjct: 41 EDEEKEEEKAKVAAKAKAKKALKAKIEEK 69
Score = 33.1 bits (76), Expect = 0.056
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKK 32
KLK K + KKKK K K K
Sbjct: 194 KLKAEKAAKGGKKKKGKAKAKLNVGGANDDD 224
Score = 33.1 bits (76), Expect = 0.062
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 11 NKKKKKKKKKKKKKKKKKKKKKKKRV 36
N+K K +K K KKKK K K K V
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNV 217
Score = 32.7 bits (75), Expect = 0.087
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
K + K K K ++K+K K++K++K + +
Sbjct: 55 KAKAKKALKAKIEEKEKAKREKEEKGLRELE 85
Score = 31.6 bits (72), Expect = 0.20
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKRVL 37
+K K +K K KKKK K K ++
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLN 216
Score = 31.2 bits (71), Expect = 0.24
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKK 34
E+ +K K KKKK K K K
Sbjct: 191 INEKLKAEKAAKGGKKKKGKAKAKLNVGG 219
Score = 31.2 bits (71), Expect = 0.25
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKK 34
E E+++K+++K K K K KK K K
Sbjct: 39 EEEDEEKEEEKAKVAAKAKAKKALKAK 65
Score = 30.4 bits (69), Expect = 0.53
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
+ E ++K+++K K K K KK K ++
Sbjct: 38 DEEEDEEKEEEKAKVAAKAKAKKALKAKI 66
Score = 29.2 bits (66), Expect = 1.3
Identities = 8/30 (26%), Positives = 20/30 (66%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
K + ++ K K ++K+K K++K++K ++
Sbjct: 55 KAKAKKALKAKIEEKEKAKREKEEKGLREL 84
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 38.1 bits (89), Expect = 0.002
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ KR+ + E KKKK K+ K K KK K K+
Sbjct: 248 AEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKK 282
Score = 36.5 bits (85), Expect = 0.005
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
R +++ K++ KKKK K+ K K KK
Sbjct: 243 AAESRAEKKRKSKEEIKKKKPKESKGVKALKKV 275
Score = 36.2 bits (84), Expect = 0.006
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKK 34
R E++ K K++ KKKK K+ K K KK
Sbjct: 247 RAEKKRKSKEEIKKKKPKESKGVKALKKV 275
Score = 33.1 bits (76), Expect = 0.062
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 10 ENKKKKKKKKKKKKKKKKKKKKKKKRV 36
E K+K K++ KKKK K+ K K K+V
Sbjct: 249 EKKRKSKEEIKKKKPKESKGVKALKKV 275
Score = 32.7 bits (75), Expect = 0.083
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+K + ++ KKKK K+ K K KK K
Sbjct: 245 ESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAK 278
Score = 32.7 bits (75), Expect = 0.086
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
+ + +K K++ KKKK K+ K K KK V
Sbjct: 247 RAEKKRKSKEEIKKKKPKESKGVKALKKVV 276
Score = 32.7 bits (75), Expect = 0.10
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
+ E++ +KK+K K++ KKKK K+ K + L
Sbjct: 242 EAAESRAEKKRKSKEEIKKKKPKESKGVKAL 272
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 38.1 bits (88), Expect = 0.002
Identities = 14/27 (51%), Positives = 23/27 (85%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKK 34
E+++KK KKK+KK+K+K++ K KKK+
Sbjct: 196 EKKSKKPKKKEKKEKEKERDKDKKKEV 222
Score = 38.1 bits (88), Expect = 0.002
Identities = 18/65 (27%), Positives = 37/65 (56%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLAS 63
+ + +++ K KKKK++K+K++KKKKKK +H + N + + L ++S
Sbjct: 270 EAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDGGAEQPVQNGAVEEEPLPPMSS 329
Query: 64 FFVVA 68
+ ++A
Sbjct: 330 YKLLA 334
Score = 37.4 bits (86), Expect = 0.003
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 10 ENKKKKKKKKKKKKKKKKKKKKKKKRV 36
E K KK KKK+KK+K+K++ K KKK V
Sbjct: 196 EKKSKKPKKKEKKEKEKERDKDKKKEV 222
Score = 37.0 bits (85), Expect = 0.004
Identities = 10/33 (30%), Positives = 26/33 (78%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+K +ER ++++ +K K++KKK++K+K+ +++
Sbjct: 82 VKLEEERRHRQRLEKDKREKKKREKEKRGRRRH 114
Score = 36.6 bits (84), Expect = 0.005
Identities = 9/28 (32%), Positives = 21/28 (75%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKK 31
+R ++R K K++KKK++K+K+ +++
Sbjct: 88 RRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 35.8 bits (82), Expect = 0.011
Identities = 9/30 (30%), Positives = 22/30 (73%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
+ R+ R+ +K K++KKK++K+K+ +++
Sbjct: 86 EERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 35.4 bits (81), Expect = 0.014
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRVLYHMFE 42
+KK KK KKK+KK+K+K++ K K+ F+
Sbjct: 196 EKKSKKPKKKEKKEKEKERDKDKKKEVEGFK 226
Score = 34.7 bits (79), Expect = 0.025
Identities = 9/34 (26%), Positives = 23/34 (67%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+KL+ + + +K K++KKK++K+K+ +++
Sbjct: 82 VKLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 34.7 bits (79), Expect = 0.026
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
+K ++ KKK+KK+K+K++ K KKK+ + + L
Sbjct: 197 KKSKKPKKKEKKEKEKERDKDKKKEVEGFKSL 228
Score = 33.5 bits (76), Expect = 0.058
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K + E KK K KKKK++K+K++KKKKKK
Sbjct: 267 KDAEAEETKKSPKHKKKKQRKEKEEKKKKKKH 298
Score = 33.5 bits (76), Expect = 0.058
Identities = 11/33 (33%), Positives = 24/33 (72%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKRVLYH 39
K E ++ +++ +K K++KKK++K+K+ R +H
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 32.0 bits (72), Expect = 0.18
Identities = 12/35 (34%), Positives = 25/35 (71%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLY 38
+++ ++ KK+KK+K+K++ K KKK+ + K +L
Sbjct: 196 EKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLL 230
Score = 31.6 bits (71), Expect = 0.23
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLY 38
K+ K+ + K+KK+K+K++ K KKK+ + K +L
Sbjct: 197 KKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLA 231
Score = 31.2 bits (70), Expect = 0.32
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKK 34
E+ + +KK KK KKK+KK+K+K++
Sbjct: 188 EKGDVPAVEKKSKKPKKKEKKEKEKER 214
Score = 31.2 bits (70), Expect = 0.35
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKK 30
K K+ K++E K+K+K++ K KKK+ + K
Sbjct: 198 KSKKPKKKEKKEKEKERDKDKKKEVEGFK 226
Score = 30.0 bits (67), Expect = 0.86
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKK 31
K ++ +++ KK+K+K++ K KKK+ + K
Sbjct: 197 KKSKKPKKKEKKEKEKERDKDKKKEVEGFK 226
Score = 29.3 bits (65), Expect = 1.3
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKK 25
K K++K+R+ K++KKKKKK +
Sbjct: 279 KHKKKKQRKEKEEKKKKKKHHHHR 302
Score = 29.3 bits (65), Expect = 1.5
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Query: 2 KLKRRKER--ENKKKKKK------KKKKKKKKKKKKKKKKK 34
KL +K R E K +K +KK KK KKK+KK+K+K
Sbjct: 172 KLPVQKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEK 212
Score = 27.7 bits (61), Expect = 4.5
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
K + K+++ +K+K++KKKKKK +
Sbjct: 276 KSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDGGAE 311
>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase,
non-specific RNA binding region part 2. This is a
region found N terminal to the catalytic domain of
glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes
but not in Escherichia coli. This region is thought to
bind RNA in a non-specific manner, enhancing
interactions between the tRNA and enzyme, but is not
essential for enzyme function.
Length = 83
Score = 35.8 bits (83), Expect = 0.002
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ E + KKKKKKKKKK + K KK
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKK 45
Score = 33.1 bits (76), Expect = 0.015
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKK 34
KKKKKKKKKK + K KK
Sbjct: 24 KKKKKKKKKKAEDTAATAKAKKA 46
Score = 31.2 bits (71), Expect = 0.075
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKK 34
KKKKKKKKK + K KK
Sbjct: 25 KKKKKKKKKAEDTAATAKAKKAT 47
Score = 27.3 bits (61), Expect = 1.7
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEA 43
+++ KKKKKK + K KK + MF
Sbjct: 23 VKKKKKKKKKKAEDTAATAKAKKATAEDVSEGAMFME 59
Score = 25.8 bits (57), Expect = 5.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKR 35
K + KKKKKKKKKK +
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTA 38
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase;
Provisional.
Length = 330
Score = 37.9 bits (89), Expect = 0.002
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLY 38
+K ++E K K +KKK+K++ K K K K L+
Sbjct: 56 LKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKPRLF 93
Score = 34.4 bits (80), Expect = 0.021
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
MK + + +KK+ K K +KKK+K++ K K
Sbjct: 52 MKEELKAALLDKKELKAWHKAQKKKEKQEAKAAK 85
Score = 33.7 bits (78), Expect = 0.039
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
+ K K K +KKK+K++ K K K K + VL
Sbjct: 61 LDKKELKAWH--KAQKKKEKQEAKAAKAKSKPRLFVL 95
Score = 32.9 bits (76), Expect = 0.086
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 2 KLKRRKER------ENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMF 41
+ K KE + K+ K K +KKK+K++ K K + +F
Sbjct: 48 QYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKPRLF 93
>gnl|CDD|224094 COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 289
Score = 37.6 bits (88), Expect = 0.002
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 55 VDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIE-----PIFIFVMAYLAYL 109
+ LL GL + + V GT++G++ G+ G+V R +R+ + P + + +A L
Sbjct: 87 ISLLIGLLAVLISLVIGTLLGLLAGYFGGWVDRVL--MRITDIFLAFPSLLLAILLVAIL 144
Query: 110 TAEIFHMSGILAIT 123
+ ++ LA+
Sbjct: 145 GPGLLNLILALALV 158
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 37.2 bits (87), Expect = 0.003
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
++ K+RE +K+K ++++K K K +KK++
Sbjct: 117 QQAKKREAAGEKEKAPRRERKPKPKAPRKKRK 148
Score = 36.8 bits (86), Expect = 0.003
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K+R+ K+K ++++K K K +KK+K +
Sbjct: 120 KKREAAGEKEKAPRRERKPKPKAPRKKRKPR 150
Score = 35.7 bits (83), Expect = 0.007
Identities = 8/35 (22%), Positives = 22/35 (62%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
++ +R +++ K++ +K+K ++++K K K R
Sbjct: 110 VQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPR 144
Score = 35.3 bits (82), Expect = 0.009
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+++E +K+K ++++K K K +KK+K R
Sbjct: 119 AKKREAAGEKEKAPRRERKPKPKAPRKKRKPR 150
Score = 33.7 bits (78), Expect = 0.037
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
KR E +K ++++K K K +KK+K + +
Sbjct: 121 KREAAGEKEKAPRRERKPKPKAPRKKRKPRAQK 153
Score = 33.4 bits (77), Expect = 0.039
Identities = 9/33 (27%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 5 RRKERENKKKK--KKKKKKKKKKKKKKKKKKKR 35
+R E++ KK++ +K+K ++++K K K ++
Sbjct: 113 QRAEQQAKKREAAGEKEKAPRRERKPKPKAPRK 145
Score = 32.6 bits (75), Expect = 0.081
Identities = 8/33 (24%), Positives = 21/33 (63%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K++ ++ + KK++ +K+K ++++K K K
Sbjct: 109 KVQAQRAEQQAKKREAAGEKEKAPRRERKPKPK 141
Score = 31.4 bits (72), Expect = 0.18
Identities = 6/33 (18%), Positives = 19/33 (57%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
L+ K + ++ +++ KK++ +K+K ++
Sbjct: 103 LEEAKAKVQAQRAEQQAKKREAAGEKEKAPRRE 135
Score = 30.7 bits (70), Expect = 0.34
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
++ K ++K K K +KK+K + +K + +
Sbjct: 127 EKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHT 159
Score = 30.7 bits (70), Expect = 0.35
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
+ ++ RE K K K +KK+K + +K + + V
Sbjct: 127 EKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVS 162
Score = 30.3 bits (69), Expect = 0.47
Identities = 5/31 (16%), Positives = 20/31 (64%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ + + +++ KK++ +K+K ++++K +
Sbjct: 109 KVQAQRAEQQAKKREAAGEKEKAPRRERKPK 139
Score = 29.9 bits (68), Expect = 0.58
Identities = 7/33 (21%), Positives = 19/33 (57%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
+++ +++K K K +KK+K + +K + +
Sbjct: 126 GEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQH 158
Score = 29.9 bits (68), Expect = 0.59
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
K + R +K K K +KK+K + +K + +
Sbjct: 126 GEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQ 157
>gnl|CDD|218738 pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap
is involved in recombination. Rap (recombination adept
with plasmid) increases lambda-by-plasmid recombination
catalyzed by Escherichia coli's RecBCD pathway.
Length = 188
Score = 36.9 bits (86), Expect = 0.003
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEA 43
+ LKR K +E K+K + + ++++ K +K+K K + + EA
Sbjct: 32 LALKREKAQEKKRKAEAQAERRELKARKEKLKTRS--DWLKEA 72
>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in
Williams-Beuren syndrome. This domain family is found
in eukaryotes, and is typically between 72 and 83 amino
acids in length. The family is found in association
with pfam08241. This family is made up of
S-adenosylmethionine-dependent methyltransferases. The
proteins are deleted in Williams-Beuren syndrome (WBS),
a complex developmental disorder with multisystemic
manifestations including supravalvular aortic stenosis
(SVAS) and a specific cognitive phenotype.
Length = 85
Score = 35.4 bits (82), Expect = 0.003
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKK----KKKKR 35
+ K R ++ ++KKKKKKK KKK K +KK++
Sbjct: 27 IDASKVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQ 63
Score = 31.1 bits (71), Expect = 0.070
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K++R +R +KKKKKKK KKK K+ +KK++
Sbjct: 31 KVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQM 64
Score = 30.3 bits (69), Expect = 0.16
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 1 MKLKRRKERENKKKKKKKKKKKK----KKKKKKKKKKKRV 36
++ ++ R KKKKKK KKK K +KK++ +++ K V
Sbjct: 32 VRRISQRNRRKKKKKKKLKKKSKEWILRKKEQMRRRGKEV 71
Score = 30.0 bits (68), Expect = 0.20
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
+ ++ ++ ++KKKKKKK KKK K+ +L
Sbjct: 28 DASKVRRISQRNRRKKKKKKKLKKKSKEWIL 58
Score = 27.3 bits (61), Expect = 1.9
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ + K ++ ++ ++KKKKKKK KKK
Sbjct: 26 QIDASKVRRISQRNRRKKKKKKKLKKKS 53
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 37.4 bits (87), Expect = 0.003
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKK 31
E K KK KKKKKKKKK++K
Sbjct: 268 DVSEMVKFKKPKKKKKKKKKRRKDL 292
Score = 36.7 bits (85), Expect = 0.005
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 10 ENKKKKKKKKKKKKKKKKKKKKKK 33
++ K KK KKKKKKKKK++K
Sbjct: 269 VSEMVKFKKPKKKKKKKKKRRKDL 292
Score = 36.3 bits (84), Expect = 0.008
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTEMGHNNVLYVD 56
K KK KKKKKKKKK++K + L E + V+
Sbjct: 273 VKFKKPKKKKKKKKKRRKDLDEDELEPEAEGLGSSDSGSRKDVE 316
Score = 35.9 bits (83), Expect = 0.008
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKK 34
+ K KK KKKKKKKKK++K
Sbjct: 270 SEMVKFKKPKKKKKKKKKRRKDL 292
Score = 35.5 bits (82), Expect = 0.011
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKR 35
+ K KK KKKKKKKKK++K
Sbjct: 270 SEMVKFKKPKKKKKKKKKRRKDL 292
Score = 35.5 bits (82), Expect = 0.012
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 15 KKKKKKKKKKKKKKKKKKKKRVL 37
+ K KK KKKKKKKKK+++ L
Sbjct: 270 SEMVKFKKPKKKKKKKKKRRKDL 292
Score = 35.5 bits (82), Expect = 0.012
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKRV 36
+ K KK KKKKKKKKK++K +
Sbjct: 270 SEMVKFKKPKKKKKKKKKRRKDL 292
Score = 31.7 bits (72), Expect = 0.27
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 27/55 (49%)
Query: 8 ERENKKKKKKKKKK---------------------------KKKKKKKKKKKKKR 35
E E K+++ KKK K KK KKKKKKKKK+R
Sbjct: 235 EAEKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKKKKKRR 289
Score = 30.9 bits (70), Expect = 0.45
Identities = 10/31 (32%), Positives = 23/31 (74%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
KR++E E K+K+++ ++K K ++K+++ K
Sbjct: 44 KRQEEAEAKRKREELREKIAKAREKRERNSK 74
Score = 30.1 bits (68), Expect = 0.84
Identities = 7/32 (21%), Positives = 19/32 (59%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
+ + +++RE ++K K ++K+++ K K
Sbjct: 48 EAEAKRKREELREKIAKAREKRERNSKLGGIK 79
Score = 29.3 bits (66), Expect = 1.3
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
LK+ K+R+ KK+ ++KK +K+K++ +
Sbjct: 95 LKKSKKRQKKKEAERKKALLLDEKEKERAAEYT 127
Score = 28.6 bits (64), Expect = 2.7
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 16/52 (30%)
Query: 4 KRRKERENKKKKKKKK----------------KKKKKKKKKKKKKKKRVLYH 39
K R++RE K K KK KK++KKK+ ++K+ L
Sbjct: 64 KAREKRERNSKLGGIKTLGEDDDDDDDTKAWLKKSKKRQKKKEAERKKALLL 115
Score = 28.2 bits (63), Expect = 3.0
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKRVLY 38
++ K++KKK+ ++KK +K+K++ Y
Sbjct: 96 KKSKKRQKKKEAERKKALLLDEKEKERAAEY 126
Score = 28.2 bits (63), Expect = 3.0
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRVLYH 39
KK++KKK+ ++KK +K+K+R +
Sbjct: 99 KKRQKKKEAERKKALLLDEKEKERAAEY 126
Score = 27.8 bits (62), Expect = 4.4
Identities = 7/36 (19%), Positives = 24/36 (66%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
+ ++++ E + K+K+++ ++K K ++K+++ L
Sbjct: 40 ENWKKRQEEAEAKRKREELREKIAKAREKRERNSKL 75
Score = 26.6 bits (59), Expect = 9.8
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 18/56 (32%)
Query: 2 KLKRRKERENKKKKKKK------------------KKKKKKKKKKKKKKKKRVLYH 39
K+ + +E+ + K KK KK++KKK+ ++KK +L
Sbjct: 61 KIAKAREKRERNSKLGGIKTLGEDDDDDDDTKAWLKKSKKRQKKKEAERKKALLLD 116
Score = 26.6 bits (59), Expect = 9.8
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K + + ++K K ++K+++ K K
Sbjct: 50 EAKRKREELREKIAKAREKRERNSKLGGIKT 80
>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich
region. This highly conserved region is found towards
the C-terminus of the transmembrane domain. The
function is unclear.
Length = 151
Score = 36.5 bits (84), Expect = 0.003
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K+RKE + +K KKKK+K +KK K KK+
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKK 43
Score = 26.5 bits (58), Expect = 7.8
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKK 27
K++KE+ ++KK K KKK++K K
Sbjct: 27 KKKKEKVSEKKGKSKKKEEKPNGK 50
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 272
Score = 36.7 bits (85), Expect = 0.005
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
K+ + + +K K K KK KK R
Sbjct: 181 AKKAAKLSSTASSGDEKSPKSKAAPKKAGKKMRK 214
Score = 32.8 bits (75), Expect = 0.085
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
K + + +K K K KK KK +K
Sbjct: 183 KAAKLSSTASSGDEKSPKSKAAPKKAGKKMRK 214
Score = 30.9 bits (70), Expect = 0.34
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
R+ ++ K +K K K KK
Sbjct: 178 SRRAKKAAKLSSTASSGDEKSPKSKAAPKKAG 209
Score = 29.3 bits (66), Expect = 1.2
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
RR ++ K +K K K KK
Sbjct: 178 SRRAKKAAKLSSTASSGDEKSPKSKAAPKKA 208
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 34.3 bits (79), Expect = 0.006
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
KLK + ++ + KKKKKKKKKK K K++ +K+
Sbjct: 9 KLKLKGKKIDVKKKKKKKKKKNKSKEEVVTEKE 41
Score = 34.3 bits (79), Expect = 0.006
Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
KLK +K + KKKKKKKKKK K K++ +K++
Sbjct: 11 KLKGKKI-DVKKKKKKKKKKNKSKEEVVTEKEEE 43
Score = 30.9 bits (70), Expect = 0.11
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 15 KKKKKKKKKKKKKKKKKKKKRVL 37
K K KK KKKKKKKKKK +
Sbjct: 11 KLKGKKIDVKKKKKKKKKKNKSK 33
Score = 30.9 bits (70), Expect = 0.11
Identities = 15/23 (65%), Positives = 15/23 (65%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKK 34
K K K KK KKKKKKKKKK
Sbjct: 7 GGKLKLKGKKIDVKKKKKKKKKK 29
Score = 29.3 bits (66), Expect = 0.36
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKR 35
K K K KK KKKKKKKKK+
Sbjct: 7 GGKLKLKGKKIDVKKKKKKKKKK 29
Score = 27.8 bits (62), Expect = 1.2
Identities = 14/25 (56%), Positives = 14/25 (56%)
Query: 10 ENKKKKKKKKKKKKKKKKKKKKKKK 34
N K K K KK KKKKKKKK
Sbjct: 3 SNVVGGKLKLKGKKIDVKKKKKKKK 27
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 35.7 bits (83), Expect = 0.006
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 11 NKKKKKKKKKKKKKKKKKKKKKK 33
+KKK KK KK+K+K++K+ +K
Sbjct: 13 DKKKAKKAKKEKRKQRKQARKGA 35
Score = 34.1 bits (79), Expect = 0.019
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKRV 36
KKK KK KK+K+K++K+ +K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGAD 36
Score = 34.1 bits (79), Expect = 0.023
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKK 34
KKK KK KK+K+K++K+ +K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGA 35
Score = 26.0 bits (58), Expect = 9.9
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 7 KERENKKKKKKKKKKKKKKKKK 28
K++ K KK+K+K++K+ +K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGA 35
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this
family (Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 34.5 bits (80), Expect = 0.007
Identities = 9/33 (27%), Positives = 23/33 (69%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
K RKE E +++++ K+ K K+++ ++K +++
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKI 33
Score = 31.8 bits (73), Expect = 0.050
Identities = 7/32 (21%), Positives = 22/32 (68%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
K ++ +E+ ++++ K+ K K+++ ++K +K
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEK 32
Score = 30.3 bits (69), Expect = 0.19
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
K + + +RE + K+ K K+++ ++K +K KK
Sbjct: 4 KEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 29.5 bits (67), Expect = 0.37
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKK 31
+ K ++E E K+ K K+++ ++K +K KK
Sbjct: 5 EEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein;
Validated.
Length = 860
Score = 36.3 bits (84), Expect = 0.007
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
K K +K+ + K K K KKK K K KK KKR
Sbjct: 750 KTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 32.9 bits (75), Expect = 0.091
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLY 38
K K++ K K KKK K K KK KK+ LY
Sbjct: 752 KAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRAGPLY 788
Score = 32.1 bits (73), Expect = 0.18
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
E++ K KKK K K K KKK K +
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKS 776
Score = 30.6 bits (69), Expect = 0.57
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K + K++ K K K KKK K K KK K
Sbjct: 749 KKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTK 781
Score = 30.2 bits (68), Expect = 0.85
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
K+ + KKK K K K KKK K K +
Sbjct: 749 KKTKAKKKSASTKGKAAKTVKKKSKAKSKK 778
Score = 29.0 bits (65), Expect = 1.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKK 34
+++ KKK K K K KKK K K
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAK 775
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 35.8 bits (83), Expect = 0.008
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYH 39
KLK + + K K ++ KK++ + ++KKK+K+
Sbjct: 352 KLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSE 389
Score = 35.8 bits (83), Expect = 0.010
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K + ER+ K++ + ++KKK+KK K +++ +
Sbjct: 363 KAKPERDKKERPGRYRRKKKEKKAKSERRGLQ 394
Score = 33.9 bits (78), Expect = 0.040
Identities = 9/34 (26%), Positives = 22/34 (64%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
++++ KE+ K K K ++ KK++ + ++KK+
Sbjct: 349 RIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKK 382
Score = 33.1 bits (76), Expect = 0.068
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
+ K +KK++ + ++KKK+KK K +++
Sbjct: 362 TKAKPERDKKERPGRYRRKKKEKKAKSERRGLQ 394
Score = 31.2 bits (71), Expect = 0.30
Identities = 8/33 (24%), Positives = 21/33 (63%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K K ++++ + + ++KKK+KK K +++ +
Sbjct: 363 KAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 28.9 bits (65), Expect = 1.5
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+L++R E+ +K K K K ++ KK++ + R
Sbjct: 345 ELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYR 378
Score = 27.7 bits (62), Expect = 4.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
R+E E + +K K+K K K K ++ KK
Sbjct: 343 REELEKRIEKLKEKPPKPPTKAKPERDKKE 372
Score = 27.0 bits (60), Expect = 8.2
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
KR ++ + K K K K ++ KK++ + +R
Sbjct: 348 KRIEKLKEKPPKPPTKAKPERDKKERPGRYRR 379
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 36.2 bits (84), Expect = 0.009
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
L+R KE + K++K+ +K KK+++KKKK+ ++
Sbjct: 553 LQREKEEKEALKEQKRLRKLKKQEEKKKKELEK 585
Score = 34.6 bits (80), Expect = 0.025
Identities = 10/34 (29%), Positives = 24/34 (70%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ ++ ++ K++K+ +K KK+++KKKK+ +K
Sbjct: 554 QREKEEKEALKEQKRLRKLKKQEEKKKKELEKLE 587
Score = 32.3 bits (74), Expect = 0.14
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLY 38
+ K KE ++K+ +K KK+++KKKK+ +K ++
Sbjct: 554 QREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKI 591
Score = 28.1 bits (63), Expect = 3.1
Identities = 11/34 (32%), Positives = 26/34 (76%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
KL ++E + +K++K+ K++K+ +K KK+++K+
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKK 579
>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992). This
bacterial family of proteins has no known function.
However, the cis-regulatory yjdF motif, just upstream
from the gene encoding the proteins for this family, is
a small non-coding RNA, Rfam:RF01764. The yjdF motif is
found in many Firmicutes, including Bacillus subtilis.
In most cases, it resides in potential 5' UTRs of
homologues of the yjdF gene whose function is unknown.
However, in Streptococcus thermophilus, a yjdF RNA motif
is associated with an operon whose protein products
synthesise nicotinamide adenine dinucleotide (NAD+).
Also, the S. thermophilus yjdF RNA lacks typical yjdF
motif consensus features downstream of and including the
P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the
S. thermophilus RNAs might sense a distinct compound
that structurally resembles the ligand bound by other
yjdF RNAs. On the ohter hand, perhaps these RNAs have an
alternative solution forming a similar binding site, as
is observed with some SAM riboswitches.
Length = 132
Score = 34.5 bits (80), Expect = 0.009
Identities = 13/35 (37%), Positives = 28/35 (80%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ K+ K++ +K+KK+++K++K++ K++KKK K R
Sbjct: 96 ERNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130
Score = 25.7 bits (57), Expect = 9.9
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRVLYHM 40
K + ++ K++KKK+ K+KK+++K +
Sbjct: 92 KLEHERNKQEKKKRSKEKKEEEKERKRQL 120
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 35.8 bits (83), Expect = 0.010
Identities = 18/33 (54%), Positives = 27/33 (81%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
KLK + ER+N+K + K+KKK+KKK++KKKK+
Sbjct: 312 KLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQ 344
Score = 28.1 bits (63), Expect = 3.0
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
++ +R+ K K ++ +K + K+KKK+KK+
Sbjct: 304 EMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEE 339
Score = 26.5 bits (59), Expect = 9.3
Identities = 9/34 (26%), Positives = 22/34 (64%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ K+ K++E KKKK+ ++ +++ +K + + K
Sbjct: 329 KEKKKEKKKEEKKKKQIERLEERIEKLEVQATDK 362
>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain. This region
covers both the Brf homology II and III regions. This
region is involved in binding TATA binding protein.
Length = 95
Score = 33.8 bits (78), Expect = 0.012
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKK 31
K ++K E KKKKK+K KKK+ +
Sbjct: 35 KELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 32.6 bits (75), Expect = 0.025
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
L+ ++E+E K+K + KKKKK+K KKK+
Sbjct: 29 LEEQEEKELKQKADEGNNSGKKKKKRKAKKKR 60
Score = 32.6 bits (75), Expect = 0.029
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
+E + K+K + KKKKK+K KKKR
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRD 61
Score = 32.2 bits (74), Expect = 0.035
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
++ + KE + K + KKKKK+K KKK+
Sbjct: 29 LEEQEEKELKQKADEGNNSGKKKKKRKAKKKRD 61
Score = 32.2 bits (74), Expect = 0.036
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
++ +++ + KKKKK+K KKK+ +
Sbjct: 34 EKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 31.5 bits (72), Expect = 0.076
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
+ K K++ ++ KKKKK+K KKK+ +
Sbjct: 32 QEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 30.3 bits (69), Expect = 0.17
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ + ++ ++ + KKKKK+K KKK+ +
Sbjct: 31 EQEEKELKQKADEGNNSGKKKKKRKAKKKRDEA 63
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 35.4 bits (82), Expect = 0.013
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
+K+RK++ +K++ K + KK+K+K KK K V
Sbjct: 626 IKKRKKKRKRKRRFLTKIEGVKKEKRKDKKLKNV 659
Score = 34.6 bits (80), Expect = 0.022
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 9/54 (16%)
Query: 4 KRRKE---------RENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTEMG 48
RR E RE K K+ KK K KK + KK+K + FE +
Sbjct: 201 ARRAELRKMRELLFREEAKAKRIKKIKSKKYHRVHKKEKLKEELKEFEELVKAD 254
Score = 32.0 bits (73), Expect = 0.21
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 10 ENKKKKKKKKKKKKKKKKKKK--KKKKR 35
+ KK+KKK+K+K++ K + KK+KR
Sbjct: 624 DGIKKRKKKRKRKRRFLTKIEGVKKEKR 651
Score = 29.6 bits (67), Expect = 1.2
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
K + ++ K K K KKKKKK+K L
Sbjct: 514 KKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDDL 550
Score = 28.5 bits (64), Expect = 2.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKK 28
K ++RK R K + KK+K+K KK K
Sbjct: 631 KKRKRKRRFLTKIEGVKKEKRKDKKLK 657
Score = 27.3 bits (61), Expect = 6.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K +K+ +K K K K K KKKKKK+
Sbjct: 509 KQDSKKKSSSKLDKAANKISKAAVKVKKKKKKE 541
Score = 26.9 bits (60), Expect = 8.9
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ ++K K K K K KKKKKK+K
Sbjct: 510 QDSKKKSSSKLDKAANKISKAAVKVKKKKKKEK 542
>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic. This model
describes the eukaryotic 60S (cytosolic) ribosomal
protein L7 and paralogs that may or may not also be L7.
Human, Drosophila, and Arabidopsis all have both a
typical L7 and an L7-related paralog. This family is
designated subfamily rather than equivalog to reflect
these uncharacterized paralogs. Members of this family
average ~ 250 residues in length, somewhat longer than
the archaeal L30P/L7E homolog (~ 155 residues) and much
longer than the related bacterial/organellar form (~ 60
residues).
Length = 235
Score = 34.6 bits (80), Expect = 0.016
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
LK+RK R+ + K+ K KKK KKK+K
Sbjct: 3 LLKKRKARQELAVQVAKQAKAKKKANKKKRKIYF 36
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 35.0 bits (81), Expect = 0.016
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+K + +ER KKKKKKKKK KK +
Sbjct: 172 LKARLEEERAKKKKKKKKKKTKKNNATGSSAEAT 205
Score = 33.5 bits (77), Expect = 0.039
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
R +E KKKKKKKKKK KK + V
Sbjct: 174 ARLEEERAKKKKKKKKKKTKKNNATGSSAEATV 206
Score = 32.3 bits (74), Expect = 0.096
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKK 34
E E K + ++++ KKKKKKKKKK KK
Sbjct: 168 EVELLKARLEEERAKKKKKKKKKKTKK 194
Score = 31.2 bits (71), Expect = 0.28
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+L+ + ++ KKKKKKK KK +
Sbjct: 175 RLEEERAKKKKKKKKKKTKKNNATGSSAEATVS 207
Score = 31.2 bits (71), Expect = 0.31
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+E K + ++++ KKKKKKKKKK K
Sbjct: 165 TEEEVELLKARLEEERAKKKKKKKKKKTK 193
Score = 30.4 bits (69), Expect = 0.41
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K R +++ KKKKKKKKKK KK
Sbjct: 173 KARLEEERAKKKKKKKKKKTKKNNATGSS 201
Score = 30.4 bits (69), Expect = 0.47
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
LK R E E + KKKKKKKKKK KK
Sbjct: 172 LKARLEEE-RAKKKKKKKKKKTKKNNATGSSAE 203
Score = 29.2 bits (66), Expect = 1.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 9 RENKKKKKKKKKKKKKKKKKKKKKKKR 35
E + K + ++++ KKKKKKKKKK
Sbjct: 166 EEEVELLKARLEEERAKKKKKKKKKKT 192
Score = 27.3 bits (61), Expect = 4.6
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
++ +R K+++ KKKKK KK +
Sbjct: 176 LEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAV 210
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
Length = 859
Score = 35.2 bits (82), Expect = 0.016
Identities = 9/41 (21%), Positives = 13/41 (31%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEA 43
L + E+ K KK K +K + Y E
Sbjct: 814 LAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEK 854
Score = 34.8 bits (81), Expect = 0.026
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ K K +K K++ +K K
Sbjct: 830 KDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 33.2 bits (77), Expect = 0.083
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
L ++ KK K +K K++ +K
Sbjct: 823 YLADAPAKDPAGKKAAVKFSRKTKQQYVASEKD 855
Score = 32.8 bits (76), Expect = 0.089
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
KL+ + K KK K +K K++
Sbjct: 820 KLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEK 854
Score = 32.8 bits (76), Expect = 0.10
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K ++ + + K KK K +K K++
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQY 849
Score = 32.5 bits (75), Expect = 0.13
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+L K + + K KK K +K
Sbjct: 812 ELLAEKPEKLRYLADAPAKDPAGKKAAVKFSRK 844
Score = 31.3 bits (72), Expect = 0.30
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKR 35
KK K +K K++ +K +
Sbjct: 834 GKKAAVKFSRKTKQQYVASEKDGK 857
Score = 29.4 bits (67), Expect = 1.4
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKK 32
K ++ K +K K++ +K K
Sbjct: 830 KDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region.
This domain is the C-terminal end of ribosomal L18/L5
proteins.
Length = 93
Score = 33.3 bits (77), Expect = 0.017
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 9 RENKKKKKKKKKKKKKKKKKKKKKK 33
R + +KKK+KK+ K + K+ KK
Sbjct: 56 RADPSRKKKEKKEVKAESKRYNAKK 80
Score = 31.8 bits (73), Expect = 0.051
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKK----KKKKRV 36
R + KKK+KK+ K + K+ KK ++K RV
Sbjct: 56 RADPSRKKKEKKEVKAESKRYNAKKLTLEQRKARV 90
Score = 25.6 bits (57), Expect = 7.0
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKK 32
+++KE++ K + K+ KK +++K +
Sbjct: 61 RKKKEKKEVKAESKRYNAKKLTLEQRKAR 89
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 34.6 bits (79), Expect = 0.024
Identities = 16/28 (57%), Positives = 16/28 (57%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKR 35
E K KKKKKK K KKK KK KR
Sbjct: 236 GDEEKSKKKKKKLAKNKKKLDDDKKGKR 263
Score = 34.2 bits (78), Expect = 0.036
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTEMG 48
+ E KKKKKK K KKK KK K+ E ++ G
Sbjct: 237 DEEKSKKKKKKLAKNKKKLDDDKKGKRGGDDDADEYDSDDG 277
Score = 32.6 bits (74), Expect = 0.13
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKK 33
E ++KKKKKK K KKK KK K+
Sbjct: 237 DEEKSKKKKKKLAKNKKKLDDDKKGKR 263
Score = 31.5 bits (71), Expect = 0.24
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+E E +K +++ KK KK KK K KK
Sbjct: 321 EESEEEKNEEEGGLSKKGKKLKKLKGKKN 349
Score = 31.5 bits (71), Expect = 0.29
Identities = 12/27 (44%), Positives = 12/27 (44%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKK 33
E E KK KK KK K KK K
Sbjct: 328 NEEEGGLSKKGKKLKKLKGKKNGLDKD 354
Score = 31.1 bits (70), Expect = 0.34
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
+ + +K KKKKKK K KKK KK +
Sbjct: 235 DGDEEKSKKKKKKLAKNKKKLDDDKKGKR 263
Score = 28.8 bits (64), Expect = 1.9
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKK 34
E E +++ KK KK KK K KK
Sbjct: 323 SEEEKNEEEGGLSKKGKKLKKLKGKKNG 350
Score = 28.8 bits (64), Expect = 1.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ +E +N+++ KK KK KK K KK
Sbjct: 321 EESEEEKNEEEGGLSKKGKKLKKLKGKKNGL 351
Score = 27.6 bits (61), Expect = 4.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKR 35
E++++K +++ KK KK KK K +
Sbjct: 319 DSEESEEEKNEEEGGLSKKGKKLKKLKGK 347
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 34.4 bits (79), Expect = 0.024
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
+ + K K +KK KK K K K K K K +V
Sbjct: 79 PTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKV 111
Score = 32.8 bits (75), Expect = 0.065
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ KE+ +KK KK K K K K K K K K
Sbjct: 82 PKPKEKPKPEKKPKKPKPKPKPKPKPKPKVK 112
Score = 31.7 bits (72), Expect = 0.16
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K+ + K K K K K K K K + K KK
Sbjct: 92 KKPKKPKPKPKPKPKPKPKVKPQPKPKKP 120
Score = 31.3 bits (71), Expect = 0.21
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKRV 36
K +KK KK K K K K K K K
Sbjct: 89 KPEKKPKKPKPKPKPKPKPKPKVK 112
Score = 30.5 bits (69), Expect = 0.43
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ K+K K +KK KK K K K K K
Sbjct: 74 ETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPK 106
Score = 30.1 bits (68), Expect = 0.54
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 10 ENKKKKKKKKKKKKKKKKKKKKKKKRV 36
E K KK K K K K K K K K + +
Sbjct: 91 EKKPKKPKPKPKPKPKPKPKVKPQPKP 117
Score = 30.1 bits (68), Expect = 0.54
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K K+ K + K K K K K + K KK K
Sbjct: 93 KPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTA 125
Score = 30.1 bits (68), Expect = 0.55
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
+ K K+K K +KK KK K K K K +
Sbjct: 77 PEPTPPKPKEKPKPEKKPKKPKPKPKPKPKP 107
Score = 30.1 bits (68), Expect = 0.60
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K + KK K K K K K K K K + K
Sbjct: 89 KPEKKPKKPKPKPKPKPKPKPKVKPQPKP 117
Score = 29.8 bits (67), Expect = 0.72
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
K+ K+ + K K K K K K K + K KK
Sbjct: 92 KKPKKPKPKPKPKPKPKPKVKPQPKPKKPP 121
Score = 29.8 bits (67), Expect = 0.75
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ + E K K+K K +KK KK K K K K
Sbjct: 72 EPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPK 104
Score = 27.1 bits (60), Expect = 6.6
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K + + + K K K K K + K KK K
Sbjct: 96 KPKPKPKPKPKPKPKVKPQPKPKKPPSKTAA 126
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 34.5 bits (80), Expect = 0.027
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K +++ E+E +K KKK + KK K +
Sbjct: 420 KAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGE 452
Score = 34.1 bits (79), Expect = 0.036
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
++ K+RK + +K++ +K KKK + KK K
Sbjct: 414 LRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKG 448
Score = 33.4 bits (77), Expect = 0.062
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
RK+ K++K +KK +K++ +K KKK
Sbjct: 409 AERKKLRKKQRKAEKKAEKEEAEKAAAKKKAE 440
Score = 33.0 bits (76), Expect = 0.090
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
KL++++ + KK +K++ +K KKK + KK
Sbjct: 413 KLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKA 446
Score = 32.2 bits (74), Expect = 0.17
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K ++ +++ K++ +K KKK + KK K
Sbjct: 417 KQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGP 449
Score = 31.8 bits (73), Expect = 0.20
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 10 ENKKKKKKKKKKKKKKKKKKKKKKKR 35
++KK +KK++K +KK +K++ +K
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKA 433
Score = 31.4 bits (72), Expect = 0.23
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRV 36
+KK++K +KK +K++ +K KK+
Sbjct: 415 RKKQRKAEKKAEKEEAEKAAAKKKA 439
Score = 30.7 bits (70), Expect = 0.44
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K R+K+R+ +KK +K++ +K KKK + K
Sbjct: 412 KKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAK 444
Score = 29.9 bits (68), Expect = 0.74
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
K KE K KKK + KK K + K+V
Sbjct: 424 KAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 29.5 bits (67), Expect = 1.1
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 10 ENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ ++KK +KK++K +KK +K++
Sbjct: 406 LSPAERKKLRKKQRKAEKKAEKEEAE 431
Score = 28.4 bits (64), Expect = 2.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 10 ENKKKKKKKKKKKKKKKKKKKKKK 33
N ++KK +KK++K +KK +K
Sbjct: 404 GNLSPAERKKLRKKQRKAEKKAEK 427
Score = 28.0 bits (63), Expect = 3.4
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+E EN ++KK +KK++K +KK ++
Sbjct: 399 EEGENGNLSPAERKKLRKKQRKAEKKAEK 427
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 34.0 bits (78), Expect = 0.033
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 7/60 (11%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLAS 63
K++ E K K + K +K K +A E+ DL GL S
Sbjct: 216 KKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAAEVD-------DLFGGLDS 268
Score = 29.0 bits (65), Expect = 1.6
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
K++ E KKK + K K + K
Sbjct: 208 KKKAAAEAKKKAAAEAKAAAAKAAAEAKAA 237
Score = 27.5 bits (61), Expect = 4.8
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 4 KRRKERENKKKKKKKKKKK-----KKKKKKKKKKKKR 35
K++ E E KKK + KKK K K + K
Sbjct: 200 KKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKA 236
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 33.5 bits (77), Expect = 0.040
Identities = 9/31 (29%), Positives = 29/31 (93%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
LK+ K+++ K++++++K++KK+++++++K+K
Sbjct: 189 LKKLKQQQQKREEERRKQRKKQQEEEERKQK 219
Score = 33.5 bits (77), Expect = 0.043
Identities = 6/31 (19%), Positives = 28/31 (90%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+K ++ ++K++++++K++KK+++++++K++
Sbjct: 189 LKKLKQQQQKREEERRKQRKKQQEEEERKQK 219
Score = 32.8 bits (75), Expect = 0.078
Identities = 6/32 (18%), Positives = 27/32 (84%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKK 32
K +++++ ++++++K++KK+++++++K+K
Sbjct: 188 ELKKLKQQQQKREEERRKQRKKQQEEEERKQK 219
Score = 32.8 bits (75), Expect = 0.081
Identities = 6/32 (18%), Positives = 28/32 (87%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
++ +++ +K++++++K++KK+++++++K+K
Sbjct: 188 ELKKLKQQQQKREEERRKQRKKQQEEEERKQK 219
Score = 31.6 bits (72), Expect = 0.18
Identities = 8/33 (24%), Positives = 29/33 (87%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
KLK+++++ ++++K++KK+++++++K+K ++
Sbjct: 191 KLKQQQQKREEERRKQRKKQQEEEERKQKAEEA 223
Score = 31.6 bits (72), Expect = 0.19
Identities = 8/32 (25%), Positives = 26/32 (81%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
++++E E +K++KK+++++++K+K ++ +K
Sbjct: 195 QQQKREEERRKQRKKQQEEEERKQKAEEAWQK 226
Score = 31.2 bits (71), Expect = 0.26
Identities = 11/31 (35%), Positives = 27/31 (87%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
KR +E E KK K++++K++++++K++KK+++
Sbjct: 182 KRLQEWELKKLKQQQQKREEERRKQRKKQQE 212
Score = 31.2 bits (71), Expect = 0.26
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 2 KLKRRKERENKKKKKKKKKKKKK---KKKKKKKKKKRVLYHMFEA 43
K +R KERE + +++ K+K + ++K ++ K+R H EA
Sbjct: 113 KQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKKEA 157
Score = 29.3 bits (66), Expect = 1.1
Identities = 8/31 (25%), Positives = 23/31 (74%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K +K E K+K++++K++++ + +++ K+K
Sbjct: 103 KLQKLLEEKQKQEREKEREEAELRQRLAKEK 133
Score = 28.9 bits (65), Expect = 1.4
Identities = 9/33 (27%), Positives = 26/33 (78%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ K+R + KK K++++K++++++K++KK++
Sbjct: 179 EAKKRLQEWELKKLKQQQQKREEERRKQRKKQQ 211
Score = 27.8 bits (62), Expect = 3.8
Identities = 6/34 (17%), Positives = 25/34 (73%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
K+ + ++ +K ++K+K++++K++++ + ++ L
Sbjct: 96 KQAQRQKKLQKLLEEKQKQEREKEREEAELRQRL 129
Score = 27.8 bits (62), Expect = 4.0
Identities = 9/31 (29%), Positives = 24/31 (77%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKK 32
+ KR +ER ++KK+++++++K+K ++ +K
Sbjct: 196 QQKREEERRKQRKKQQEEEERKQKAEEAWQK 226
Score = 27.4 bits (61), Expect = 4.7
Identities = 5/39 (12%), Positives = 26/39 (66%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHM 40
+++K ++ ++K+K++++K++++ + +++ + Y
Sbjct: 98 AQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEE 136
Score = 27.4 bits (61), Expect = 5.4
Identities = 8/32 (25%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 6 RKERENKKK--KKKKKKKKKKKKKKKKKKKKR 35
K+ + +KK K ++K+K++++K++++ + R
Sbjct: 95 AKQAQRQKKLQKLLEEKQKQEREKEREEAELR 126
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 33.9 bits (78), Expect = 0.043
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKK 32
R E++ K K KK +K KK K +K
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQK 796
Score = 31.6 bits (72), Expect = 0.24
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 9 RENKKKKKKKKKKKKKKKKKKKKKKKRV 36
R KK K K KK +K KK K +++
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQKI 797
Score = 31.3 bits (71), Expect = 0.37
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKK-----KKKRV 36
R +++ K KK +K KK K +K K KR
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRA 806
Score = 29.7 bits (67), Expect = 1.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKK 33
E ++ + +KK K K KK +K KK
Sbjct: 764 EPDSAFRGEKKAKPKAAKKDARKAKK 789
Score = 28.6 bits (64), Expect = 2.9
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKK-------KKKKKKKR 35
K+ K + KK +K KK K +K K+ KKK
Sbjct: 771 GEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKV 811
>gnl|CDD|219154 pfam06738, DUF1212, Protein of unknown function (DUF1212). This
family represents a conserved region within a number of
hypothetical membrane proteins of unknown function found
in eukaryotes, bacteria and archaea.
Length = 193
Score = 32.9 bits (76), Expect = 0.052
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 57 LLSGLAS-FFVVAVGGTVIGVIWGFLTG----FVTRFTNEVRVIEPIFIFVMAYLAYLTA 111
L +GLAS F V GG I + FL G + + + + +F + A++A L A
Sbjct: 108 LAAGLASAAFAVLFGGDWIDFLIAFLAGLLGGLLRQILAKRGLNPFVFEALAAFVASLIA 167
Query: 112 EIFHMSGI 119
+ G+
Sbjct: 168 LLAVSLGL 175
>gnl|CDD|149438 pfam08374, Protocadherin, Protocadherin. The structure of
protocadherins is similar to that of classic cadherins
(pfam00028), but particularly on the cytoplasmic domains
they also have some unique features. They are expressed
in a variety of organisms and are found in high
concentrations in the brain where they seem to be
localised mainly at cell-cell contact sites. Their
expression seems to be developmentally regulated.
Length = 223
Score = 33.3 bits (76), Expect = 0.052
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 12/50 (24%)
Query: 4 KRRKERENKKKKKKKKK------------KKKKKKKKKKKKKKRVLYHMF 41
+ ++ E KK + KK K+KKKKK KKKK + L F
Sbjct: 61 RYCRQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPKSLLLNF 110
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 33.7 bits (77), Expect = 0.053
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTE 46
+ R+ RE + K +K + K + K+K K +L YTE
Sbjct: 441 EERRLREEAIRAKAEKTARMKAEMKEKTLKMFLLSQKHIVYTE 483
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 33.7 bits (77), Expect = 0.056
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKK 33
K + K KK K KKK KK KKK+ K
Sbjct: 137 DKILGIETKAKKGKAKKKTKKSKKKEAK 164
Score = 32.5 bits (74), Expect = 0.10
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
L + + K KKK KK KKK+ K+ K
Sbjct: 140 LGIETKAKKGKAKKKTKKSKKKEAKESSDKDDE 172
Score = 32.5 bits (74), Expect = 0.10
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
L + E K KK K KKK KK KKK+ K+
Sbjct: 136 LDKILGIETKAKKGKAKKKTKKSKKKEAKESS 167
Score = 30.2 bits (68), Expect = 0.67
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K KK K KKK KK KKK+ K+
Sbjct: 138 KILGIETKAKKGKAKKKTKKSKKKEAKESSD 168
Score = 29.0 bits (65), Expect = 1.5
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKK 32
+ ++ + ++ KKK KK KKK+ K+ K
Sbjct: 140 LGIETKAKKGKAKKKTKKSKKKEAKESSDKDD 171
Score = 28.6 bits (64), Expect = 2.3
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 12/49 (24%)
Query: 2 KLKRRKERENKKKKKKK------------KKKKKKKKKKKKKKKKRVLY 38
+ R +R KKK KK KKK K+KK K + K++++
Sbjct: 375 QKGDRPKRGEKKKPKKPSVDKPLHPSWEAKKKAKEKKANAKFQGKKIVF 423
Score = 27.9 bits (62), Expect = 3.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K +K + KK KK KKK+ K+ K +++
Sbjct: 145 KAKKGKAKKKTKKSKKKEAKESSDKDDEEES 175
>gnl|CDD|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function
(DUF1764). This is a family of eukaryotic proteins of
unknown function. This family contains many
hypothetical proteins.
Length = 98
Score = 31.7 bits (72), Expect = 0.058
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
KR+K+++ K + K KK +KK KKK +
Sbjct: 23 KRKKKKKRTAKTARPKATKKGQKKDKKKDEFP 54
Score = 29.7 bits (67), Expect = 0.28
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
+K+RK+++ + K + K KK +KK KKK
Sbjct: 21 IKKRKKKKKRTAKTARPKATKKGQKKDKKKD 51
Score = 29.4 bits (66), Expect = 0.43
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K+R+ KKK+ K + K KK +KK KK
Sbjct: 18 FSNIKKRKKKKKRTAKTARPKATKKGQKKDKK 49
Score = 29.4 bits (66), Expect = 0.47
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 11 NKKKKKKKKKKKKKKKKKKKKKKKR 35
N KK+KKKKK+ K + K KK +
Sbjct: 20 NIKKRKKKKKRTAKTARPKATKKGQ 44
Score = 29.0 bits (65), Expect = 0.50
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K +++K++ K + K KK +KK KKK +
Sbjct: 22 KKRKKKKKRTAKTARPKATKKGQKKDKKKDEFP 54
Score = 29.0 bits (65), Expect = 0.61
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
K K+R + + K KK +KK KKK + +
Sbjct: 26 KKKKRTAKTARPKATKKGQKKDKKKDEFPEFP 57
Score = 29.0 bits (65), Expect = 0.62
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
++++++ K+ K + K KK +KK KKK
Sbjct: 19 SNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDE 52
Score = 28.6 bits (64), Expect = 0.81
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
+ K++K + K KK +KK KKK + +
Sbjct: 24 RKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPE 58
>gnl|CDD|219621 pfam07890, Rrp15p, Rrp15p. Rrp15p is required for the formation
of 60S ribosomal subunits.
Length = 132
Score = 32.3 bits (74), Expect = 0.059
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
L R K+ KKK K +K +KK K++ + +K++ L
Sbjct: 24 LSRSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQAL 58
Score = 30.0 bits (68), Expect = 0.41
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
KL + K++ +K +KK K++ + +K++ +K RV
Sbjct: 29 KLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRV 63
Score = 29.6 bits (67), Expect = 0.54
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFE 42
K K++ + E +KK K++ + +K++ +K + K VL E
Sbjct: 32 KAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVKPVLPEDLE 72
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 33.2 bits (76), Expect = 0.064
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMF 41
E E+ ++ K++ +KK+K KKK +K+K + + F
Sbjct: 341 DDEDEDDEESKEEVEKKQKVKKKPRKRKVNPVSNNF 376
Score = 31.3 bits (71), Expect = 0.30
Identities = 10/31 (32%), Positives = 23/31 (74%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
++ E++ ++ K++ +KK+K KKK +K++V
Sbjct: 339 DEDDEDEDDEESKEEVEKKQKVKKKPRKRKV 369
Score = 30.5 bits (69), Expect = 0.44
Identities = 10/33 (30%), Positives = 23/33 (69%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
+ ++ ++++ K++ +KK+K KKK +K+K V
Sbjct: 340 EDDEDEDDEESKEEVEKKQKVKKKPRKRKVNPV 372
Score = 26.7 bits (59), Expect = 9.3
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKR 35
E+ + + ++ K++ +KK+K KKK R
Sbjct: 338 IDEDDEDEDDEESKEEVEKKQKVKKKPR 365
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 33.4 bits (76), Expect = 0.066
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K RE +KKK+K++ KK K KK++K
Sbjct: 559 KNRERRKKKRKRRAAKKAVTKAKKERKIG 587
Score = 33.0 bits (75), Expect = 0.082
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
+ +ER KK+K++ KK K KK++K K
Sbjct: 559 KNRERRKKKRKRRAAKKAVTKAKKERKIGKEK 590
Score = 31.1 bits (70), Expect = 0.39
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
K K +R +K ++++KKK+K++ KK K K+
Sbjct: 549 KSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKE 583
Score = 31.1 bits (70), Expect = 0.41
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
K R+ R+ K+K++ KK K KK++K K++V
Sbjct: 559 KNRERRKKKRKRRAAKKAVTKAKKERKIGKEKV 591
Score = 30.0 bits (67), Expect = 0.75
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K + + +N++++KKK+K++ KK K KK+R
Sbjct: 551 KTELDRTDKNRERRKKKRKRRAAKKAVTKAKKER 584
Score = 28.8 bits (64), Expect = 2.2
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ +R+K+R+ + KK K KK++K K+K
Sbjct: 561 RERRKKKRKRRAAKKAVTKAKKERKIGKEKVDG 593
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 118
Score = 31.8 bits (73), Expect = 0.076
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 7/38 (18%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKK-------KKKKKKR 35
R+E K K+K+KKKKKKK+ + ++KKK+
Sbjct: 66 AREEAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKEE 103
Score = 29.9 bits (68), Expect = 0.33
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 7/40 (17%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKK-------KKKKKKK 34
K R + E K K+K+KKKKKKK+ + ++KKK++
Sbjct: 64 KTAREEAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKEE 103
Score = 29.9 bits (68), Expect = 0.36
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
R+ + ++ + K K+K+KKKKKKK+ +
Sbjct: 60 GRKGKTAREEAVEAKAKEKEKKKKKKKELE 89
Score = 29.1 bits (66), Expect = 0.60
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
RK + +++ + K K+K+KKKKKKK+ +
Sbjct: 59 GGRKGKTAREEAVEAKAKEKEKKKKKKKELE 89
Score = 26.8 bits (60), Expect = 4.0
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKK 34
R R+ K +++ + K K+K+KKKKKKK
Sbjct: 58 RGGRKGKTAREEAVEAKAKEKEKKKKKKK 86
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 32.3 bits (74), Expect = 0.080
Identities = 7/29 (24%), Positives = 20/29 (68%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ E + K K++K+++ ++K+K+ K++
Sbjct: 122 ELLEKELAKLKREKRRENERKQKEILKEQ 150
Score = 31.9 bits (73), Expect = 0.099
Identities = 9/30 (30%), Positives = 23/30 (76%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
E+E K K++K+++ ++K+K+ K++ ++L
Sbjct: 125 EKELAKLKREKRRENERKQKEILKEQMKML 154
Score = 31.5 bits (72), Expect = 0.12
Identities = 8/31 (25%), Positives = 23/31 (74%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
+E+ ++ +K+ K K++K+++ ++K+K +L
Sbjct: 117 EEQIDELLEKELAKLKREKRRENERKQKEIL 147
Score = 29.9 bits (68), Expect = 0.41
Identities = 6/28 (21%), Positives = 19/28 (67%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ +K+ K K++K+++ ++K+K+ +
Sbjct: 121 DELLEKELAKLKREKRRENERKQKEILK 148
Score = 29.2 bits (66), Expect = 0.80
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKR 35
KE K++K+++ ++K+K+ K++ K
Sbjct: 126 KELAKLKREKRRENERKQKEILKEQMKML 154
Score = 26.9 bits (60), Expect = 4.5
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKR 35
E E + +K+ K K++K+++ ++K+
Sbjct: 115 DEEEQIDELLEKELAKLKREKRRENERKQ 143
Score = 26.1 bits (58), Expect = 8.6
Identities = 7/31 (22%), Positives = 22/31 (70%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKK 32
+L ++ + K++K+++ ++K+K+ K++ K
Sbjct: 122 ELLEKELAKLKREKRRENERKQKEILKEQMK 152
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 33.2 bits (75), Expect = 0.083
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K++ E K + K + + + + ++K
Sbjct: 1334 AKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKA 1366
Score = 32.4 bits (73), Expect = 0.14
Identities = 6/34 (17%), Positives = 18/34 (52%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ + + + + ++K + +KKK++ KK+
Sbjct: 1346 EAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379
Score = 32.0 bits (72), Expect = 0.22
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K+ E + + + + ++K + +KK+
Sbjct: 1342 KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKK 1373
Score = 32.0 bits (72), Expect = 0.22
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
++K KKK ++ KK + K + +
Sbjct: 1328 KKKADAAKKKAEEAKKAAEAAKAEAEAAADEA 1359
Score = 32.0 bits (72), Expect = 0.22
Identities = 6/33 (18%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 5 RRKERENKKK---KKKKKKKKKKKKKKKKKKKK 34
++K E KK K + + + + ++K +
Sbjct: 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAE 1367
Score = 32.0 bits (72), Expect = 0.23
Identities = 4/32 (12%), Positives = 15/32 (46%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ +K E K + + + + ++K + ++
Sbjct: 1340 EAKKAAEAAKAEAEAAADEAEAAEEKAEAAEK 1371
Score = 31.6 bits (71), Expect = 0.24
Identities = 3/32 (9%), Positives = 14/32 (43%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
++ K + + + + ++K + +K+
Sbjct: 1341 AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKK 1372
Score = 31.6 bits (71), Expect = 0.24
Identities = 6/33 (18%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 6 RKERENKKKK---KKKKKKKKKKKKKKKKKKKR 35
+K+ E KK K + + + + ++K
Sbjct: 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAE 1367
Score = 31.3 bits (70), Expect = 0.37
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K++ + KK ++ KK + K + + +
Sbjct: 1328 KKKADAAKKKAEEAKKAAEAAKAEAEAAADE 1358
Score = 30.9 bits (69), Expect = 0.50
Identities = 4/31 (12%), Positives = 13/31 (41%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKK 32
K + K+ K + + + + ++K +
Sbjct: 1337 KAEEAKKAAEAAKAEAEAAADEAEAAEEKAE 1367
Score = 30.5 bits (68), Expect = 0.65
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ +K E KKK ++ KKK KKK ++ KK
Sbjct: 1313 EAKKADEAKKKAEEAKKKADAAKKKAEEAKKA 1344
Score = 30.5 bits (68), Expect = 0.65
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ K++ E KK KKK ++ KK + K +
Sbjct: 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAE 1351
Score = 30.1 bits (67), Expect = 0.80
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
++K E KKK KKK ++ KK + K
Sbjct: 1321 KKKAEEAKKKADAAKKKAEEAKKAAEAAKAE 1351
Score = 30.1 bits (67), Expect = 0.84
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ + +E+ +KKK++ KKK KKK ++K+
Sbjct: 1358 EAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391
Score = 30.1 bits (67), Expect = 0.84
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ +K E KKK ++ KKK + KK + KKK
Sbjct: 1481 EAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
Score = 30.1 bits (67), Expect = 0.86
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
+K+ + KKK ++ KK + K + +
Sbjct: 1328 KKKADAAKKKAEEAKKAAEAAKAEAEAAADEA 1359
Score = 30.1 bits (67), Expect = 0.89
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ +K E KKK ++ KK + KKK ++ KKK
Sbjct: 1468 EAKKADEAKKKAEEAKKADEAKKKAEEAKKK 1498
Score = 30.1 bits (67), Expect = 0.97
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
++K E+KKK + KK KKK + KKK
Sbjct: 1397 KKKAEEDKKKADELKKAAAAKKKADEAKKK 1426
Score = 30.1 bits (67), Expect = 0.99
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+++K E KKK ++ KKK + KK KKK
Sbjct: 1389 EKKKADEAKKKAEEDKKKADELKKAAAAKKK 1419
Score = 29.7 bits (66), Expect = 1.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K + K+ E KKK ++ KK + KKK ++ KK
Sbjct: 1452 KAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKK 1484
Score = 29.7 bits (66), Expect = 1.1
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+++K E KKK ++ KK + KKK ++ KKK
Sbjct: 1300 EKKKADEAKKKAEEAKKADEAKKKAEEAKKK 1330
Score = 29.7 bits (66), Expect = 1.3
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+K E++KK + KK+ ++ KK ++ KK+
Sbjct: 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKK 1710
Score = 29.7 bits (66), Expect = 1.3
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ + ++K + +KKK++ KKK KK+
Sbjct: 1353 EAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK 1386
Score = 29.3 bits (65), Expect = 1.4
Identities = 5/33 (15%), Positives = 15/33 (45%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K + + + + + + ++K + +KKK
Sbjct: 1341 AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKK 1373
Score = 29.3 bits (65), Expect = 1.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+K E+KKK ++ KK ++ +KK + KK
Sbjct: 1667 AKKAEEDKKKAEEAKKAEEDEKKAAEALKKE 1697
Score = 29.3 bits (65), Expect = 1.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
+ + E KKK++ KKK KKK ++KKK
Sbjct: 1361 AAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK 1392
Score = 29.3 bits (65), Expect = 1.5
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ ++ E + KK ++ KK ++ +KK + KK+
Sbjct: 1665 EEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE 1697
Score = 29.0 bits (64), Expect = 1.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
+ K++ E + KK + KK KKK + KKK
Sbjct: 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKKK 1426
Score = 29.0 bits (64), Expect = 1.9
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
+++K E KKK ++ KK + KKK ++ KK
Sbjct: 1429 EKKKADEAKKKAEEAKKADEAKKKAEEAKK 1458
Score = 29.0 bits (64), Expect = 2.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ K +KKK++ KKK KKK ++KKK
Sbjct: 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK 1392
Score = 29.0 bits (64), Expect = 2.3
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
+++KE KK KKK ++KKK + KKK
Sbjct: 1370 EKKKEEAKKKADAAKKKAEEKKKADEAKKK 1399
Score = 29.0 bits (64), Expect = 2.3
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ +K+ E KKK KKK ++KKK + KKK
Sbjct: 1367 EAAEKKKEEAKKKADAAKKKAEEKKKADEAKKK 1399
Score = 28.6 bits (63), Expect = 2.4
Identities = 5/34 (14%), Positives = 13/34 (38%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K K++ + KK + K + + + +
Sbjct: 1330 KADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAE 1363
Score = 28.6 bits (63), Expect = 2.4
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+++ KK+ ++ KK ++ KKK+ ++KKK
Sbjct: 1687 EKKAAEALKKEAEEAKKAEELKKKEAEEKKK 1717
Score = 28.6 bits (63), Expect = 2.6
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
++K KKK ++KKK + KKK ++ KKK
Sbjct: 1377 KKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
Score = 28.6 bits (63), Expect = 2.6
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
+ +K E KKK ++ KK ++ KKK ++ KK
Sbjct: 1442 EAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
Score = 28.6 bits (63), Expect = 2.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K + E KK ++ KKK ++ KK ++ +KK
Sbjct: 1660 KIKAAEEAKKAEEDKKKAEEAKKAEEDEKKA 1690
Score = 28.2 bits (62), Expect = 3.2
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
++K E KK ++ +KK + KK+ ++ KK
Sbjct: 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703
Score = 28.2 bits (62), Expect = 3.3
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKK 33
++K E KKK ++KKK + KKK ++ KK
Sbjct: 1417 KKKADEAKKKAEEKKKADEAKKKAEEAKK 1445
Score = 28.2 bits (62), Expect = 3.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKK 33
++K E KK KKK + KKK ++KKK
Sbjct: 1404 KKKADELKKAAAAKKKADEAKKKAEEKKK 1432
Score = 28.2 bits (62), Expect = 3.5
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
++ E ENK K ++ KK ++ KKK ++ KK
Sbjct: 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKK 1682
Score = 28.2 bits (62), Expect = 3.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+K KKK + KKK ++KKK + KKK
Sbjct: 1411 KKAAAAKKKADEAKKKAEEKKKADEAKKK 1439
Score = 27.8 bits (61), Expect = 4.2
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K + +K+ + KKK ++ KK + KKK ++ KK
Sbjct: 1426 KAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1458
Score = 27.8 bits (61), Expect = 4.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K + K+ + KKK ++ KKK KKK ++ K+
Sbjct: 1310 KAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKK 1343
Score = 27.8 bits (61), Expect = 4.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKK 33
++ KK + KKK ++KKK + KKK
Sbjct: 1411 KKAAAAKKKADEAKKKAEEKKKADEAKKK 1439
Score = 27.8 bits (61), Expect = 4.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
++ E +KKK++ KKK KKK ++KK+
Sbjct: 1361 AAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK 1392
Score = 27.8 bits (61), Expect = 4.6
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+K+ E KKK + KKK ++ KK + KKK
Sbjct: 1424 KKKAEEKKKADEAKKKAEEAKKADEAKKK 1452
Score = 27.8 bits (61), Expect = 4.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K + K+ + KKK ++ KKK + KK + KK+
Sbjct: 1478 KAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
Score = 27.8 bits (61), Expect = 5.1
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K + K+ + KKK ++ KK + KKK ++ KK+
Sbjct: 1465 KAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKK 1498
Score = 27.8 bits (61), Expect = 5.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
++K E KK + KKK ++ KKK KKK
Sbjct: 1308 KKKAEEAKKADEAKKKAEEAKKKADAAKKK 1337
Score = 27.8 bits (61), Expect = 5.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
++ E + KK + KK+ ++ KK ++ KKK
Sbjct: 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKK 1710
Score = 27.8 bits (61), Expect = 5.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+K+ E KK + KKK ++ KK + KKK
Sbjct: 1463 KKKAEEAKKADEAKKKAEEAKKADEAKKK 1491
Score = 27.4 bits (60), Expect = 5.6
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+K+ + KKK ++KKK + KKK ++ KK
Sbjct: 1417 KKKADEAKKKAEEKKKADEAKKKAEEAKK 1445
Score = 27.4 bits (60), Expect = 5.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K + +K+ + KKK ++ KKK + KK KK+
Sbjct: 1386 KAEEKKKADEAKKKAEEDKKKADELKKAAAAKKK 1419
Score = 27.4 bits (60), Expect = 5.8
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K + K+ + KKK ++ KK ++ KKK ++ KK
Sbjct: 1439 KAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
Score = 27.4 bits (60), Expect = 5.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+K+ E KKK + KK KKK + KK+
Sbjct: 1397 KKKAEEDKKKADELKKAAAAKKKADEAKKK 1426
Score = 27.4 bits (60), Expect = 5.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+K+ + KK KKK + KKK ++KKK
Sbjct: 1404 KKKADELKKAAAAKKKADEAKKKAEEKKK 1432
Score = 27.4 bits (60), Expect = 5.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
+ K++ E K + KKK ++ KKK KKK
Sbjct: 1306 EAKKKAEEAKKADEAKKKAEEAKKKADAAKKK 1337
Score = 27.4 bits (60), Expect = 6.1
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
+ E + +KKK++ KKK KKK +
Sbjct: 1356 ADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEK 1390
Score = 27.4 bits (60), Expect = 6.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+K+ E KK + KKK ++ KK ++ KKK
Sbjct: 1437 KKKAEEAKKADEAKKKAEEAKKAEEAKKK 1465
Score = 27.4 bits (60), Expect = 6.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+K+ E KK ++ KKK ++ KK + KKK
Sbjct: 1450 KKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
Score = 27.4 bits (60), Expect = 6.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+K+ E KK + KKK ++ KKK KK+
Sbjct: 1308 KKKAEEAKKADEAKKKAEEAKKKADAAKKK 1337
Score = 27.4 bits (60), Expect = 7.0
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K + +K+ + KKK ++ KK + KKK ++ KK+
Sbjct: 1297 KAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKK 1330
Score = 27.0 bits (59), Expect = 7.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKK 33
++K E KKK + KK + KKK + KK
Sbjct: 1489 KKKAEEAKKKADEAKKAAEAKKKADEAKK 1517
Score = 27.0 bits (59), Expect = 8.1
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K + +K+ + KKK ++KKK + KKK ++ KK+
Sbjct: 1373 KEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
Score = 27.0 bits (59), Expect = 8.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K K+ KKK + KKK ++KKK + KK+
Sbjct: 1406 KADELKKAAAAKKKADEAKKKAEEKKKADEAKKK 1439
Score = 27.0 bits (59), Expect = 8.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKK 33
+K E KK + KKK ++ KK + KKK
Sbjct: 1296 KKAEEKKKADEAKKKAEEAKKADEAKKK 1323
Score = 27.0 bits (59), Expect = 8.5
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+K E KKK ++ KKK+ ++KKK ++ KK
Sbjct: 1626 KKAEEEKKKVEQLKKKEAEEKKKAEELKK 1654
Score = 27.0 bits (59), Expect = 9.2
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
K++ E K ++ +KK + KK+ ++ KK
Sbjct: 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703
Score = 27.0 bits (59), Expect = 9.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K K+ E KKK + KKK ++ KK + KKK
Sbjct: 1291 KADEAKKAEEKKKADEAKKKAEEAKKADEAKKK 1323
Score = 26.6 bits (58), Expect = 9.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
++K E KK + KKK ++ KKK + KK
Sbjct: 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKA 1505
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 32.7 bits (75), Expect = 0.087
Identities = 17/34 (50%), Positives = 17/34 (50%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K K E KKKKKKK KKKK KK K
Sbjct: 172 KKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 31.1 bits (71), Expect = 0.23
Identities = 16/34 (47%), Positives = 16/34 (47%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K E E KKKKKK KKKK KK K
Sbjct: 172 KKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 30.4 bits (69), Expect = 0.45
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
R K++ N +++KKKKKKK KKKK KK V
Sbjct: 169 ARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAV 201
Score = 30.0 bits (68), Expect = 0.54
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMF 41
K+ E +KKKKKKK KKKK KK + + F
Sbjct: 170 RDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKAISSFF 210
Score = 30.0 bits (68), Expect = 0.54
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
++K +++KKKKKKK KKKK KK
Sbjct: 168 AARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAV 201
Score = 28.0 bits (63), Expect = 2.6
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 2 KLKRRKER-----ENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
+LK+++ + KKK +++KKKKKKK KK+ L
Sbjct: 155 RLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKL 195
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 33.0 bits (76), Expect = 0.091
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+K+ + K K KKK K + K
Sbjct: 72 SDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSK 104
Score = 31.9 bits (73), Expect = 0.18
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K++ + K K KKK K + KK
Sbjct: 74 IPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAE 107
Score = 30.3 bits (69), Expect = 0.56
Identities = 11/39 (28%), Positives = 14/39 (35%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHM 40
K K KK K + KK +KK K + Y
Sbjct: 84 KAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVK 122
Score = 30.0 bits (68), Expect = 0.80
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ KKK K K K KKK K
Sbjct: 70 TESDIPKKKTKTAAKAAAAKAPAKKKLKD 98
Score = 30.0 bits (68), Expect = 0.88
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K K + + K KKK K + KK +K
Sbjct: 76 KKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEK 108
Score = 30.0 bits (68), Expect = 0.90
Identities = 9/34 (26%), Positives = 11/34 (32%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ KK K K K KKK K +
Sbjct: 66 TDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDE 99
Score = 29.2 bits (66), Expect = 1.5
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
K + + K KKK K + KK +KK L
Sbjct: 77 KKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNAL 112
Score = 28.8 bits (65), Expect = 2.1
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
E + KKK K K K KKK K L
Sbjct: 70 TESDIPKKKTKTAAKAAAAKAPAKKKLKDEL 100
Score = 28.0 bits (63), Expect = 3.4
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K + KKK K + KK +KK K
Sbjct: 82 AAKAAAAKAPAKKKLKDELDSSKKAEKKNALDK 114
Score = 28.0 bits (63), Expect = 3.8
Identities = 8/34 (23%), Positives = 10/34 (29%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ K K K K KKK K +
Sbjct: 68 DATESDIPKKKTKTAAKAAAAKAPAKKKLKDELD 101
Score = 27.7 bits (62), Expect = 4.1
Identities = 10/33 (30%), Positives = 11/33 (33%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K + KKK K K K KKK
Sbjct: 64 KDTDDATESDIPKKKTKTAAKAAAAKAPAKKKL 96
Score = 27.3 bits (61), Expect = 6.4
Identities = 9/33 (27%), Positives = 11/33 (33%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+K + KKK K K K KK
Sbjct: 62 MVKDTDDATESDIPKKKTKTAAKAAAAKAPAKK 94
Score = 26.9 bits (60), Expect = 7.7
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
+ + KKK K + KK +KK +
Sbjct: 81 TAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDD 116
>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7). RRP7
is an essential protein in yeast that is involved in
pre-rRNA processing and ribosome assembly. It is
speculated to be required for correct assembly of rpS27
into the pre-ribosomal particle.
Length = 131
Score = 31.8 bits (73), Expect = 0.092
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
++RK ++ K ++++K K+KKKKKKK+ +
Sbjct: 60 RKRKAGASRNKAAEERRKLKEKKKKKKKELE 90
Score = 27.6 bits (62), Expect = 2.4
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
RK + + K ++++K K+KKKKKKK+
Sbjct: 58 GGRKRKAGASRNKAAEERRKLKEKKKKKKKELE 90
Score = 26.4 bits (59), Expect = 5.6
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Query: 8 ERENKKKK----KKKKKKKKKKKKKKKKKKKRVL 37
R +K+K + K ++++K K+KKKKKK+ L
Sbjct: 56 TRGGRKRKAGASRNKAAEERRKLKEKKKKKKKEL 89
>gnl|CDD|239784 cd04251, AAK_NAGK-UC, AAK_NAGK-UC: N-Acetyl-L-glutamate kinase -
uncharacterized (NAGK-UC). This domain is similar to
Escherichia coli and Pseudomonas aeruginosa NAGKs which
catalyze the phosphorylation of the gamma-COOH group of
N-acetyl-L-glutamate (NAG) by ATP in the second step of
microbial arginine biosynthesis. These uncharacterized
domain sequences are found in some bacteria (Deinococci
and Chloroflexi) and archea and belong to the Amino Acid
Kinase Superfamily (AAK).
Length = 257
Score = 32.3 bits (74), Expect = 0.10
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 80 FLT---GFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFHMSGILAITFCGI 127
F+T G +R+T++ +E +F+ VM + H G+ A+ G+
Sbjct: 50 FVTSPSGIRSRYTDK-ETLE-VFVMVMGLINKKIVARLHSLGVKAVGLTGL 98
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This
family includes gbp a protein from Soybean that binds to
GAGA element dinucleotide repeat DNA. It seems likely
that the this domain mediates DNA binding. This putative
domain contains several conserved cysteines and a
histidine suggesting this may be a zinc-binding DNA
interaction domain.
Length = 301
Score = 32.5 bits (74), Expect = 0.11
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 10 ENKKKKKKKKKKKKKKKKKKKKKKKR 35
E KK KK + K K K KK KKK
Sbjct: 146 EVKKPKKGQSPKVPKAPKPKKPKKKG 171
Score = 32.2 bits (73), Expect = 0.14
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
+ +K ++ + K K K KK KKK + V
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSV 178
Score = 31.4 bits (71), Expect = 0.23
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKR 35
E + KK KK + K K K KK KK+
Sbjct: 143 EAKEVKKPKKGQSPKVPKAPKPKKPKKK 170
Score = 30.2 bits (68), Expect = 0.63
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K +K + K K K KK KKK + K
Sbjct: 149 KPKKGQSPKVPKAPKPKKPKKKGSVSNRSVK 179
Score = 29.1 bits (65), Expect = 1.4
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K ++ + K K KK KKK + K
Sbjct: 148 KKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKM 180
Score = 28.7 bits (64), Expect = 2.0
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
K+ + + K K KK KKK + K +
Sbjct: 151 KKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGI 183
Score = 28.3 bits (63), Expect = 2.2
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K+ KK KK + K K K KK
Sbjct: 138 STAPPEAKEVKKPKKGQSPKVPKAPKPKK 166
Score = 27.5 bits (61), Expect = 5.2
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
+ K+ KK KK + K K K K+
Sbjct: 139 TAPPEAKEVKKPKKGQSPKVPKAPKPKKP 167
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 32.4 bits (74), Expect = 0.11
Identities = 11/38 (28%), Positives = 25/38 (65%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYH 39
+ KR+ + + K+K++K+ +++ K++K+ KKK L
Sbjct: 274 RPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLAR 311
Score = 32.0 bits (73), Expect = 0.18
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKR 35
E NK + K+K K ++ K+K++K+ +R
Sbjct: 266 YEPINKPVRPKRKTKAQRNKEKRRKELER 294
Score = 30.4 bits (69), Expect = 0.55
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 28/69 (40%)
Query: 2 KLKRRKERENKKKKKKKKKKK----------------------------KKKKKKKKKKK 33
K KRRKE E + K++K+ KKK K++ +KKK K+
Sbjct: 285 KEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKERGEKKKLKR 344
Query: 34 KRVLYHMFE 42
+++ H +
Sbjct: 345 RKLGKHKYP 353
Score = 30.1 bits (68), Expect = 0.78
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Query: 7 KERENKKKKKKKKKKKKKKK------KKKKKKKKR 35
K K+K K ++ K+K++K K++K+ KK+
Sbjct: 271 KPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKK 305
Score = 30.1 bits (68), Expect = 0.80
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
E E K + K+K K ++ K+K++K+
Sbjct: 265 EYEPINKPVRPKRKTKAQRNKEKRRKELE 293
Score = 29.3 bits (66), Expect = 1.2
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ K+K K ++ K+K++K+ ++
Sbjct: 268 PINKPVRPKRKTKAQRNKEKRRKELERE 295
Score = 29.3 bits (66), Expect = 1.3
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKRVL 37
K + K+K K ++ K+K++K+
Sbjct: 271 KPVRPKRKTKAQRNKEKRRKELERE 295
Score = 29.3 bits (66), Expect = 1.4
Identities = 10/31 (32%), Positives = 22/31 (70%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKK 31
K K + +R +K++K+ +++ K++K+ KKK
Sbjct: 275 PKRKTKAQRNKEKRRKELEREAKEEKQLKKK 305
Score = 28.9 bits (65), Expect = 1.7
Identities = 7/29 (24%), Positives = 19/29 (65%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ K K ++ K+K++K+ +++ K++K
Sbjct: 272 PVRPKRKTKAQRNKEKRRKELEREAKEEK 300
Score = 27.0 bits (60), Expect = 7.8
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ K + K+K K ++ K+K+R
Sbjct: 258 AWEGFESEYEPINKPVRPKRKTKAQRNKEKRR 289
>gnl|CDD|220611 pfam10169, Laps, Learning-associated protein. This is a family of
121-amino acid secretory proteins. Laps functions in the
regulation of neuronal cell adhesion and/or movement and
synapse attachment. Laps binds to the ApC/EBP (Aplysia
CCAAT/enhancer binding protein) promoter and activates
the transcription of ApC/EBP mRNA.
Length = 124
Score = 31.4 bits (71), Expect = 0.12
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 11 NKKKKKKKKKKKKKKKKKKKKKKK 34
N+++ KK KKK++KKKKKKK K
Sbjct: 99 NQRQAKKLKKKREKKKKKKKGAKN 122
Score = 31.0 bits (70), Expect = 0.16
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRV 36
+++ KK KKK++KKKKKKK K +
Sbjct: 99 NQRQAKKLKKKREKKKKKKKGAKNL 123
Score = 29.4 bits (66), Expect = 0.56
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKR 35
++ KK KKK++KKKKKKK K
Sbjct: 101 RQAKKLKKKREKKKKKKKGAKNLA 124
Score = 28.3 bits (63), Expect = 1.4
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKK 32
+R+ KK KKK++KKKKKKK K
Sbjct: 99 NQRQAKKLKKKREKKKKKKKGAKNLA 124
Score = 27.1 bits (60), Expect = 3.7
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKK 29
+ +R+ ++ KKK++KKKKKKK K
Sbjct: 98 MNQRQAKKLKKKREKKKKKKKGAKNLA 124
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 32.5 bits (74), Expect = 0.13
Identities = 11/27 (40%), Positives = 22/27 (81%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKK 33
K+ EN+KK+K++ + K+K++K ++KK
Sbjct: 408 KQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 31.3 bits (71), Expect = 0.33
Identities = 10/33 (30%), Positives = 23/33 (69%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K K K ++ + +KK+K++ + K+K++K ++K
Sbjct: 401 KAKEEKLKQEENEKKQKEQADEDKEKRQKDERK 433
Score = 28.6 bits (64), Expect = 2.3
Identities = 10/29 (34%), Positives = 21/29 (72%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKK 32
K ++E KK+K++ + K+K++K ++KK
Sbjct: 406 KLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 28.6 bits (64), Expect = 2.4
Identities = 9/29 (31%), Positives = 21/29 (72%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKK 30
KLK+ + + +K++ + K+K++K ++KK
Sbjct: 406 KLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 28.2 bits (63), Expect = 2.7
Identities = 9/32 (28%), Positives = 24/32 (75%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K ++E+ +++ +KK+K++ + K+K++K +R
Sbjct: 401 KAKEEKLKQEENEKKQKEQADEDKEKRQKDER 432
Score = 26.7 bits (59), Expect = 9.0
Identities = 8/31 (25%), Positives = 22/31 (70%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ + + E K+++ +KK+K++ + K+K++K
Sbjct: 399 EAKAKEEKLKQEENEKKQKEQADEDKEKRQK 429
>gnl|CDD|220121 pfam09135, Alb1, Alb1. Alb1 is a nuclear shuttling factor
involved in ribosome biogenesis.
Length = 112
Score = 30.9 bits (70), Expect = 0.14
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ E +KKK++KKK K+ +K++K++KK
Sbjct: 40 ASKNEGVSKKKQRKKKPKRLTRKQRKRQKKG 70
Score = 30.5 bits (69), Expect = 0.19
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
L K KKK++KKK K+ +K++K++KK
Sbjct: 38 LAASKNEGVSKKKQRKKKPKRLTRKQRKRQKKG 70
Score = 27.1 bits (60), Expect = 3.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 15 KKKKKKKKKKKKKKKKKKKKRVLYHM 40
KKK++KKK K+ +K++KR +
Sbjct: 46 VSKKKQRKKKPKRLTRKQRKRQKKGL 71
>gnl|CDD|220207 pfam09368, Sas10_Utp3_C, Sas10 C-terminal domain. This family
contains a C-terminal presumed domain in Sas10 which
hash been identified as a regulator of chromatin
silencing.
Length = 76
Score = 30.3 bits (69), Expect = 0.15
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
KR+K+R N + KK+KK +K K+ K +++ R
Sbjct: 22 KRKKDRRNPRVKKRKKYEKAVKRLKSQRRVVR 53
Score = 26.4 bits (59), Expect = 3.4
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
++RK+ + KK+KK +K K+ K +++
Sbjct: 21 RKRKKDRRNPRVKKRKKYEKAVKRLKSQRRVV 52
Score = 25.3 bits (56), Expect = 7.3
Identities = 10/34 (29%), Positives = 23/34 (67%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
L R+++++ + + KK+KK +K K+ K +++ V
Sbjct: 19 LTRKRKKDRRNPRVKKRKKYEKAVKRLKSQRRVV 52
>gnl|CDD|220231 pfam09420, Nop16, Ribosome biogenesis protein Nop16. Nop16 is a
protein involved in ribosome biogenesis.
Length = 173
Score = 31.3 bits (71), Expect = 0.17
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRVL 37
KKKK + K +K+ K+K +K+ +
Sbjct: 3 KKKKNRSSNYKVNRKRLKRKDRKKKI 28
Score = 30.9 bits (70), Expect = 0.27
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKK 34
R+ KK + K +K+ K+K +KKK
Sbjct: 1 VRKKKKNRSSNYKVNRKRLKRKDRKKK 27
Score = 30.5 bits (69), Expect = 0.36
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKK 33
R+K++ K +K+ K+K +KKK
Sbjct: 2 RKKKKNRSSNYKVNRKRLKRKDRKKKINI 30
Score = 30.5 bits (69), Expect = 0.38
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKR 35
+KKKK + K +K+ K+K ++
Sbjct: 2 RKKKKNRSSNYKVNRKRLKRKDRK 25
Score = 30.1 bits (68), Expect = 0.41
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
RK+++N+ K +K+ K+K +KKK
Sbjct: 2 RKKKKNRSSNYKVNRKRLKRKDRKKKINII 31
Score = 28.9 bits (65), Expect = 1.1
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEA-------YTEMG 48
K++K R + K +K+ K+K +KKK ++ ++ Y +G
Sbjct: 2 RKKKKNRSSNYKVNRKRLKRKDRKKKINIIGNPIIAKNWDKKKTLAQNYKRLG 54
Score = 28.2 bits (63), Expect = 2.0
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKK 32
++++K+ + K +K+ K+K +KKK
Sbjct: 1 VRKKKKNRSSNYKVNRKRLKRKDRKKKINI 30
>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional.
Length = 381
Score = 32.0 bits (73), Expect = 0.17
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
KL + + K +K K ++ +KK KK + +V
Sbjct: 337 KLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKV 371
Score = 30.8 bits (70), Expect = 0.42
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
KL++ +K K +K K ++ +KK KK R+
Sbjct: 334 KLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARL 368
Score = 29.7 bits (67), Expect = 1.1
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLY 38
L + K +K K ++ +KK KK + K + LY
Sbjct: 340 VLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALY 376
Score = 29.3 bits (66), Expect = 1.1
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K R+ ++K K +K K ++ +KK KK
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAKK 365
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 31.7 bits (72), Expect = 0.17
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ K++ E E K K + KKK + KKK + + +
Sbjct: 147 EAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAK 180
Score = 31.7 bits (72), Expect = 0.22
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ K+++ E K K+ + K K + + +KK K++
Sbjct: 115 EEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEE 147
Score = 31.7 bits (72), Expect = 0.23
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ K ++ E K K + + +KK K++ KK+ +++
Sbjct: 123 EAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEA 156
Score = 31.0 bits (70), Expect = 0.32
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K K+ E + K + + +KK K++ KK+ +++ K
Sbjct: 125 KAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAK 157
Score = 30.6 bits (69), Expect = 0.48
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K K+++ ++ K K+ + K K + + +KK +
Sbjct: 112 KQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAK 145
Score = 30.6 bits (69), Expect = 0.49
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKK----KKKKR 35
K + E E +KK K++ KK+ +++ K K KKK
Sbjct: 133 KAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKA 168
Score = 30.2 bits (68), Expect = 0.69
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K K E E K K++ KK+ +++ K K + K+
Sbjct: 133 KAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKK 166
Score = 29.8 bits (67), Expect = 0.89
Identities = 8/34 (23%), Positives = 20/34 (58%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ +++ + E KK+ +++ K K + KKK + +
Sbjct: 139 EAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAK 172
Score = 29.8 bits (67), Expect = 0.96
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ K KKK + KKK + + K K + K
Sbjct: 156 AKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKA 187
Score = 29.4 bits (66), Expect = 1.1
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
R+KE E + +K K+ ++ K+ ++K+K
Sbjct: 90 RQKELEQRAAAEKAAKQAEQAAKQAEEKQK 119
Score = 29.0 bits (65), Expect = 1.4
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ K+ E K+K+ ++ K K+ + K K + +
Sbjct: 109 QAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEA 140
Score = 29.0 bits (65), Expect = 1.4
Identities = 8/34 (23%), Positives = 21/34 (61%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+L++R E K+ ++ K+ ++K+K+ ++ K
Sbjct: 93 ELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKA 126
Score = 29.0 bits (65), Expect = 1.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKK 30
++K E KKK + + K K + K K K
Sbjct: 164 AKKKAAEAKKKAEAEAKAKAEAKAKAK 190
Score = 28.6 bits (64), Expect = 1.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K++ E E K K + K K K ++ K K + K
Sbjct: 172 KKKAEAEAKAKAEAKAKAKAEEAKAKAEAAK 202
Score = 28.6 bits (64), Expect = 2.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K+ KE K+ +++ K K + KKK + K+
Sbjct: 142 KKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKK 173
Score = 28.3 bits (63), Expect = 2.4
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ E KKK + KKK + + K K + K +
Sbjct: 156 AKAKAAA-EAKKKAAEAKKKAEAEAKAKAEAKAK 188
Score = 28.3 bits (63), Expect = 2.7
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEA 43
+K +E KK+ +++ K K + KKK + EA
Sbjct: 142 KKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEA 179
Score = 27.9 bits (62), Expect = 3.2
Identities = 6/34 (17%), Positives = 19/34 (55%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
K+R + ++K+ +++ +K K+ ++ K+
Sbjct: 82 KQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAE 115
Score = 27.9 bits (62), Expect = 3.4
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKK 31
+K+ KKK + + K K + K K K
Sbjct: 165 KKKAAEAKKKAEAEAKAKAEAKAKAK 190
Score = 27.5 bits (61), Expect = 5.2
Identities = 8/34 (23%), Positives = 21/34 (61%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K ++ E+ K+ ++K+K+ ++ K K+ + K +
Sbjct: 102 KAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAK 135
Score = 27.1 bits (60), Expect = 6.3
Identities = 5/30 (16%), Positives = 18/30 (60%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
++++ + +K K+ ++ K+ ++K+K
Sbjct: 90 RQKELEQRAAAEKAAKQAEQAAKQAEEKQK 119
Score = 27.1 bits (60), Expect = 7.0
Identities = 5/32 (15%), Positives = 19/32 (59%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ R++ ++ +K K+ ++ K+ ++K++
Sbjct: 88 QARQKELEQRAAAEKAAKQAEQAAKQAEEKQK 119
Score = 26.7 bits (59), Expect = 8.9
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKK 31
+ K ++R +K K+ ++ K+ ++K+K
Sbjct: 90 RQKELEQRAAAEKAAKQAEQAAKQAEEKQK 119
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 32.2 bits (73), Expect = 0.18
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKK 32
+E E KKKK++K K+K+ KK K +K
Sbjct: 16 EELERKKKKEEKAKEKELKKLKAAQK 41
Score = 31.4 bits (71), Expect = 0.27
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHM 40
E E ++KKKK++K K+K+ KK K +K +
Sbjct: 15 EEELERKKKKEEKAKEKELKKLKAAQKEAKAKL 47
Score = 31.4 bits (71), Expect = 0.34
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+L+R+K++E K K+K+ KK K +K+ K K + +
Sbjct: 17 ELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQ 50
Score = 29.1 bits (65), Expect = 1.6
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
+K ++ ++KKKK++K K+K+ KK K
Sbjct: 5 ESEAEKKILTEEELERKKKKEEKAKEKELKKLK 37
Score = 27.6 bits (61), Expect = 5.1
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+++ E + ++KKKK++K K+K+ KK K
Sbjct: 9 EKKILTEEELERKKKKEEKAKEKELKKLKAA 39
Score = 27.2 bits (60), Expect = 7.4
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K++KE + K+K+ KK K +K+ K K + ++
Sbjct: 21 KKKKEEKAKEKELKKLKAAQKEAKAKLQAQQ 51
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A.
Length = 1094
Score = 32.1 bits (73), Expect = 0.18
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTE 46
+KKKKKKK K+KKKKK ++ K++ H E E
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQI--HALENIEE 715
Score = 31.4 bits (71), Expect = 0.32
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 9 RENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFE 42
KKKKKKK K+KKKKK ++ K+ L ++ E
Sbjct: 682 GSRKKKKKKKSKEKKKKKNREASKQIHALENIEE 715
Score = 27.5 bits (61), Expect = 6.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKK 30
++ KKKK K+KKKKK ++ K+
Sbjct: 682 GSRKKKKKKKSKEKKKKKNREASKQ 706
>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 239
Score = 31.6 bits (72), Expect = 0.19
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 9/47 (19%)
Query: 2 KLKRRKERENK---------KKKKKKKKKKKKKKKKKKKKKKRVLYH 39
+LK RKERE K +++ KK K KKKK K K +V+Y
Sbjct: 186 ELKERKEREKKLKKVEQRLELQRELMKKGKGKKKKIVKDKDGKVVYK 232
Score = 28.9 bits (65), Expect = 1.5
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKK-KKKKKKKKR 35
++L+R ++ K KKKK K K K K KK++KR
Sbjct: 204 LELQRELMKKGKGKKKKIVKDKDGKVVYKWKKERKR 239
Score = 27.7 bits (62), Expect = 3.1
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTEM 47
K E++ KK KKK+K K+ K++K+++KK + + +
Sbjct: 164 KTSLVDEKQKKKSAKKKRKLYKELKERKEREKK-----LKKVEQRL 204
Score = 27.7 bits (62), Expect = 3.5
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 7/44 (15%)
Query: 1 MKLKRRKERENKKKKKKKKKK-------KKKKKKKKKKKKKRVL 37
K K KE + +K+++KK KK +++ KK K KKK+++
Sbjct: 179 KKRKLYKELKERKEREKKLKKVEQRLELQRELMKKGKGKKKKIV 222
Score = 27.3 bits (61), Expect = 5.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+L+ ++E K K KKKK K K K K KK
Sbjct: 202 QRLELQRELMKKGKGKKKKIVKDKDGKVVYKWKK 235
>gnl|CDD|220129 pfam09159, Ydc2-catalyt, Mitochondrial resolvase Ydc2 / RNA
splicing MRS1. Members of this family adopt a secondary
structure consisting of two beta sheets and one alpha
helix, arranged as a beta-alpha-beta motif. Each beta
sheet has five strands, arranged in a 32145 order, with
the second strand being antiparallel to the rest.
Mitochondrial resolvase Ydc2 is capable of resolving
Holliday junctions and cleaves DNA after 5'-CT-3' and
5'-TT-3' sequences. This family also contains the
mitochondrial RNA-splicing protein MRS1 which is
involved in the excision of group I introns.
Length = 254
Score = 31.6 bits (72), Expect = 0.19
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEA 43
ER +KKK + KKK K KK + ++
Sbjct: 147 ERTEILAEKKKPRSKKKSSKNSKKLRIDLVGEWLST 182
Score = 29.3 bits (66), Expect = 1.1
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKK 32
R E +KKK + KKK K KK +
Sbjct: 147 ERTEILAEKKKPRSKKKSSKNSKKLRID 174
>gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3. This family
consists of several radial spoke protein 3 (RSP3)
sequences. Eukaryotic cilia and flagella present in
diverse types of cells perform motile, sensory, and
developmental functions in organisms from protists to
humans. They are centred by precisely organised,
microtubule-based structures, the axonemes. The axoneme
consists of two central singlet microtubules, called the
central pair, and nine outer doublet microtubules. These
structures are well-conserved during evolution. The
outer doublet microtubules, each composed of A and B
sub-fibres, are connected to each other by nexin links,
while the central pair is held at the centre of the
axoneme by radial spokes. The radial spokes are T-shaped
structures extending from the A-tubule of each outer
doublet microtubule to the centre of the axoneme. Radial
spoke protein 3 (RSP3), is present at the proximal end
of the spoke stalk and helps in anchoring the radial
spoke to the outer doublet. It is thought that radial
spokes regulate the activity of inner arm dynein through
protein phosphorylation and dephosphorylation.
Length = 288
Score = 31.6 bits (72), Expect = 0.19
Identities = 9/35 (25%), Positives = 27/35 (77%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ +R +E E +++++K+++KK+ K++K+++K+
Sbjct: 173 AETQRLEEAERRRREEKERRKKQDKERKQREKETA 207
Score = 27.7 bits (62), Expect = 4.0
Identities = 10/26 (38%), Positives = 22/26 (84%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKK 29
+RR+E+E +KK+ K++K+++K+ +K
Sbjct: 184 RRREEKERRKKQDKERKQREKETAEK 209
Score = 26.9 bits (60), Expect = 7.2
Identities = 9/27 (33%), Positives = 21/27 (77%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKK 31
RR+ E +++KK+ K++K+++K+ +K
Sbjct: 183 RRRREEKERRKKQDKERKQREKETAEK 209
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 32.0 bits (73), Expect = 0.19
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K +++++ N+ KKK +KKKKKKK+KK+ K +
Sbjct: 54 TKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEG 87
Score = 31.6 bits (72), Expect = 0.23
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K K++KE++ K + + K K KK KK KKK
Sbjct: 73 KKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKK 105
Score = 30.8 bits (70), Expect = 0.45
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLY 38
K +++K+++ +KK+ K + + K K KK KK
Sbjct: 68 KKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKK 105
Score = 30.5 bits (69), Expect = 0.47
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K K+ + KKK +KKKKKKK+KK+ K + +
Sbjct: 56 KDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGE 88
Score = 30.1 bits (68), Expect = 0.71
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
K K+++++E K + + K K KK KK KKK
Sbjct: 74 KKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKP 109
Score = 28.9 bits (65), Expect = 2.0
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
++ ++E+K + KKK +KKKKKKK+KK+ K
Sbjct: 52 TSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPK 84
Score = 28.5 bits (64), Expect = 2.4
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKK 33
+++++KKKKKKK+KK+ K + + K
Sbjct: 66 SKKKSEKKKKKKKEKKEPKSEGETKLG 92
Score = 28.1 bits (63), Expect = 3.1
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLY 38
K++ E++ KKKK+KK+ K + + K K K+
Sbjct: 67 KKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKK 101
Score = 27.8 bits (62), Expect = 4.0
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKK 34
E + K +KKKKKKK+KK+ K + + K
Sbjct: 64 NESKKKSEKKKKKKKEKKEPKSEGETKL 91
Score = 27.8 bits (62), Expect = 4.4
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K K++ KKKKKKK+KK+ K + + K K
Sbjct: 62 KNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKT 95
Score = 27.4 bits (61), Expect = 5.6
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K K K+++ KK+KK+ K + + K K KK
Sbjct: 67 KKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKS 99
Score = 26.6 bits (59), Expect = 8.8
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 10/43 (23%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKK----------KKKKKKKKR 35
L E ENK KK KK+ K KKKKKK+K+
Sbjct: 39 LSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKK 81
>gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564. This
family of proteins has no known function. However, one
of the members is annotated as an EF-hand family
protein.
Length = 349
Score = 31.7 bits (72), Expect = 0.20
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKK 32
R ER+ K+ K++++KK+ +++KKKKK+
Sbjct: 277 FLRTERKEKEAKEQQEKKELEQRKKKKKE 305
Score = 28.2 bits (63), Expect = 3.1
Identities = 11/34 (32%), Positives = 24/34 (70%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ K ++ +E ++KK+ +++KKKKK+ K K++
Sbjct: 280 TERKEKEAKEQQEKKELEQRKKKKKEMAPKVKQR 313
Score = 27.8 bits (62), Expect = 4.2
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
RKE+E K++++KK+ +++KKKKK+ K +
Sbjct: 280 TERKEKEAKEQQEKKELEQRKKKKKEMAPKVK 311
Score = 26.7 bits (59), Expect = 9.5
Identities = 8/34 (23%), Positives = 22/34 (64%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K + + ++K+K+ K++++KK+ +++KK
Sbjct: 268 TKKWESLVKFLRTERKEKEAKEQQEKKELEQRKK 301
Score = 26.7 bits (59), Expect = 9.8
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKK 34
+RE KK++KK ++ K +++ K +KK
Sbjct: 13 KREKKKREKKSIRQSKLEEELNKLEKK 39
>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible
proteins-interacting protein 1. Members of this family
of proteins act as negative regulators of G1 to S cell
cycle phase progression by inhibiting cyclin-dependent
kinases. Inhibitory effects are additive with GADD45
proteins but occur also in the absence of GADD45
proteins. Furthermore, they act as a repressor of the
orphan nuclear receptor NR4A1 by inhibiting AB
domain-mediated transcriptional activity.
Length = 217
Score = 31.3 bits (71), Expect = 0.20
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKK 34
KE+E KKK K+ K+++K++K+
Sbjct: 187 KEKEEKKKVKEAKRREKEEKRMAALVAA 214
Score = 29.0 bits (65), Expect = 1.2
Identities = 13/32 (40%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Query: 6 RKER--ENKKKKKKKKKKKKKKKKKKKKKKKR 35
R R E ++K+K++KKK K+ K+++K++KR
Sbjct: 176 RDPRFQEMLQQKEKEEKKKVKEAKRREKEEKR 207
Score = 27.5 bits (61), Expect = 4.2
Identities = 11/28 (39%), Positives = 22/28 (78%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKK 32
R +E +K+K++KKK K+ K+++K++K
Sbjct: 179 RFQEMLQQKEKEEKKKVKEAKRREKEEK 206
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 31.7 bits (72), Expect = 0.21
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKK 32
K K + E+ KK K KKKKK K
Sbjct: 117 KPKPKTEKLKKKITVNKSTNKKKKKVLSSKD 147
Score = 31.0 bits (70), Expect = 0.47
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 9 RENKKKKKKKKKKKKKKKKKKKKKKKR 35
R+ K K +K KKK K KKKKK
Sbjct: 116 RKPKPKTEKLKKKITVNKSTNKKKKKV 142
Score = 29.8 bits (67), Expect = 0.91
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 10 ENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
K K +K KKK K KKKK+VL
Sbjct: 116 RKPKPKTEKLKKKITVNKSTNKKKKKVL 143
Score = 29.0 bits (65), Expect = 1.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLY 38
M+ + K + KKK K KKKKK K + + Y
Sbjct: 115 MRKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKY 152
Score = 28.3 bits (63), Expect = 3.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKK 31
L R+ + + +K KKK K KKKKK
Sbjct: 114 LMRKPKPKTEKLKKKITVNKSTNKKKKKV 142
Score = 27.1 bits (60), Expect = 8.3
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
KL ++ ++ NK K KK K K+KKK KKK +
Sbjct: 55 KLDKKNKKFNKTDDLKDSKKTKLKQKKKIKKKLHI 89
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 30.9 bits (70), Expect = 0.21
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLY 38
K +K+RE K K +K+K K + KK K K K LY
Sbjct: 122 KEKKKREVPKPKTEKEKPKTEPKKPKPSKPK--LY 154
Score = 30.1 bits (68), Expect = 0.44
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ K + + K++ K K +K+K K + KK K
Sbjct: 116 ETKTESKEKKKREVPKPKTEKEKPKTEPKKPKP 148
Score = 29.7 bits (67), Expect = 0.50
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+E + K + K+KKK++ K K +K+K
Sbjct: 111 QEDPPETKTESKEKKKREVPKPKTEKEKP 139
Score = 29.0 bits (65), Expect = 0.99
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKK 34
E+E+ + K + K+KKK++ K K +K
Sbjct: 109 TEQEDPPETKTESKEKKKREVPKPKTEK 136
Score = 28.2 bits (63), Expect = 1.9
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKK 34
+E ++ +++ + K + K+KKK++
Sbjct: 103 EESTDETEQEDPPETKTESKEKKKREVP 130
Score = 27.8 bits (62), Expect = 2.9
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ + + K + K+KKK++ K K ++
Sbjct: 108 ETEQEDPPETKTESKEKKKREVPKPKTEK 136
Score = 27.0 bits (60), Expect = 4.6
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKK 33
E E+ + +++ + K + K+KKK+
Sbjct: 101 TEEESTDETEQEDPPETKTESKEKKKR 127
Score = 26.6 bits (59), Expect = 5.5
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ ++ + K + K+KKK++ K K
Sbjct: 106 TDETEQEDPPETKTESKEKKKREVPKPKT 134
>gnl|CDD|221659 pfam12597, DUF3767, Protein of unknown function (DUF3767). This
family of proteins is found in eukaryotes. Proteins in
this family are typically between 112 and 199 amino
acids in length.
Length = 119
Score = 30.4 bits (69), Expect = 0.22
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKK 32
+RRK + KK + +KK KK ++K++
Sbjct: 91 RRRKSFQGMKKAVEAMAEKKAKKLREKEE 119
Score = 25.7 bits (57), Expect = 9.1
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
R+ + + KK + +KK KK ++K++
Sbjct: 90 YRRRKSFQGMKKAVEAMAEKKAKKLREKEE 119
>gnl|CDD|217512 pfam03359, GKAP, Guanylate-kinase-associated protein (GKAP)
protein.
Length = 342
Score = 31.7 bits (72), Expect = 0.22
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
L++ K + +KK KK K K R
Sbjct: 260 LQQLKANDWQKKVPPPVPKKPAKGPIVKPAISR 292
Score = 29.8 bits (67), Expect = 0.89
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 2 KLKR---RKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+LK +K+ KK K K ++K
Sbjct: 262 QLKANDWQKKVPPPVPKKPAKGPIVKPAISREKSLD 297
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 31.5 bits (72), Expect = 0.23
Identities = 12/44 (27%), Positives = 29/44 (65%), Gaps = 9/44 (20%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKK---------KKKKKKKKKKR 35
+ +R++E + KK++KKK++++ K +K ++K++KK+
Sbjct: 276 AEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQ 319
Score = 28.8 bits (65), Expect = 1.9
Identities = 11/32 (34%), Positives = 24/32 (75%), Gaps = 3/32 (9%)
Query: 4 KRRKERENKKKK---KKKKKKKKKKKKKKKKK 32
K+++ERE K K ++++K ++K++KK+ +K
Sbjct: 291 KKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 27.6 bits (62), Expect = 3.8
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 7/41 (17%)
Query: 4 KRRKERENKKKKKKKKK-------KKKKKKKKKKKKKKRVL 37
K R+E E K K +++ KK++KKK++++ K L
Sbjct: 263 KTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKL 303
Score = 26.8 bits (60), Expect = 7.0
Identities = 10/32 (31%), Positives = 23/32 (71%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
K+ + E E +++ ++KK++KKK++++ K K
Sbjct: 271 KILKAAEEERQEEAQEKKEEKKKEEREAKLAK 302
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 30.3 bits (69), Expect = 0.23
Identities = 8/32 (25%), Positives = 19/32 (59%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ + K + KK+++KK + +K K ++K +
Sbjct: 17 IAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAE 48
Score = 28.4 bits (64), Expect = 1.2
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K K + E++ ++KK + +K K ++K + +
Sbjct: 19 KEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYEL 51
Score = 28.0 bits (63), Expect = 1.5
Identities = 6/32 (18%), Positives = 18/32 (56%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
++ K + +++KK + +K K ++K + +
Sbjct: 20 EKAKWEKKQEEKKSEAEKLAKMSAEEKAEYEL 51
Score = 28.0 bits (63), Expect = 1.6
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKR 35
KE+ +KK+++KK + +K K ++K
Sbjct: 19 KEKAKWEKKQEEKKSEAEKLAKMSAEEKA 47
Score = 28.0 bits (63), Expect = 1.8
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
+ K ++E K K+K K +KK+++KK + +++
Sbjct: 4 EEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKL 38
Score = 28.0 bits (63), Expect = 1.9
Identities = 7/32 (21%), Positives = 21/32 (65%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K+++E++++ +K K ++K + + +K +K
Sbjct: 26 KKQEEKKSEAEKLAKMSAEEKAEYELEKLEKE 57
Score = 27.6 bits (62), Expect = 2.3
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
K + K+ E +K K ++K + + +K +K+
Sbjct: 26 KKQEEKKSEAEKLAKMSAEEKAEYELEKLEKE 57
Score = 27.6 bits (62), Expect = 2.5
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K + + E K+++KK + +K K ++K +
Sbjct: 19 KEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYE 50
Score = 27.2 bits (61), Expect = 3.1
Identities = 6/34 (17%), Positives = 20/34 (58%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K ++++E + + +K K ++K + + +K ++
Sbjct: 23 KWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEK 56
Score = 26.8 bits (60), Expect = 3.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKR 35
K+K K +KK+++KK + +K K
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAKM 41
Score = 26.5 bits (59), Expect = 5.9
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHM 40
K + + K +KK+++KK + +K K +++ Y +
Sbjct: 15 KAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYEL 51
Score = 26.5 bits (59), Expect = 6.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
K KE + K+K K +KK+++KK + +K
Sbjct: 5 EKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEK 37
Score = 26.1 bits (58), Expect = 7.0
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
K K +K + + +K +K+ ++ + + +R L
Sbjct: 37 KLAKMSAEEKAEYELEKLEKELEELEAELARREL 70
>gnl|CDD|234707 PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.
Length = 64
Score = 29.5 bits (67), Expect = 0.24
Identities = 11/34 (32%), Positives = 23/34 (67%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+L+RR+ E +K+K+KK +K+++KK ++
Sbjct: 31 ELRRREFYEKPSEKRKRKKAAARKRRRKKLAREE 64
Score = 29.1 bits (66), Expect = 0.30
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
L+ + RE +K +K+K+KK +K+++KK
Sbjct: 29 LRELRRREFYEKPSEKRKRKKAAARKRRRKKLA 61
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called
The RES complex, pre-mRNA retention and splicing
complex. Subunits of this complex are not essential for
viability of yeasts but they are required for efficient
splicing in vitro and in vivo. Furthermore,
inactivation of this complex causes pre-mRNA leakage
from the nucleus. Bud13 contains a unique,
phylogenetically conserved C-terminal region of unknown
function.
Length = 141
Score = 30.7 bits (70), Expect = 0.24
Identities = 13/44 (29%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKK--KKRVLYHMFEAYTE 46
R + E K+++K+++K++K++K++K+K+ K V E E
Sbjct: 10 RIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLE 53
Score = 29.6 bits (67), Expect = 0.53
Identities = 12/36 (33%), Positives = 29/36 (80%), Gaps = 4/36 (11%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKK----KKKKKKR 35
++R+E+E +K++K++K++K+K+ K K++++KR
Sbjct: 16 EKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKR 51
Score = 26.5 bits (59), Expect = 6.2
Identities = 9/36 (25%), Positives = 24/36 (66%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
+ K R++ E ++K++K+K+ K +K++++K+
Sbjct: 18 REEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLE 53
Score = 26.5 bits (59), Expect = 6.8
Identities = 10/53 (18%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 2 KLKRRKERENKKKKKKKKKKKK--------KKKKKKKKKKKRVLYHMFEAYTE 46
+ KR ++ K++K++K++K+K K++++K+ ++ + A
Sbjct: 15 EEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYA 67
>gnl|CDD|218612 pfam05501, DUF755, Domain of unknown function (DUF755). This
family is predominated by ORFs from Circoviridae. The
function of this family remains to be determined.
Length = 122
Score = 30.5 bits (69), Expect = 0.24
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKK------KKKKKKKKR 35
++ +RK +E +K + KKK+KK + KK KKR
Sbjct: 61 LQQPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKR 101
Score = 30.5 bits (69), Expect = 0.25
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Query: 2 KLKRRKERENKKKKKKKKKKKKK------KKKKKKKKKKR 35
++RKE++ + KKK+KK + KK KK++R
Sbjct: 64 PQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRR 103
Score = 30.1 bits (68), Expect = 0.30
Identities = 9/39 (23%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 2 KLKRRKERENKKKKKKKKKKK-----KKKKKKKKKKKKR 35
+ ++ +++ ++ KKK+KK + KK KK+++
Sbjct: 66 RKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRS 104
Score = 29.7 bits (67), Expect = 0.45
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 11 NKKKKKKKKKKKKKKKKKKKKKKKRVLYH 39
++K+K+++K + KKK+KK + V
Sbjct: 63 QPQRKRKEQQKSSQTHKKKRKKSRHVSSR 91
Score = 27.8 bits (62), Expect = 2.1
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 2 KLKRRKERENKKKKKKKK-----KKKKKKKKKKKKKK 33
K +++ + +KKK+KK + KK KK+++
Sbjct: 69 KEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
>gnl|CDD|219062 pfam06496, DUF1097, Protein of unknown function (DUF1097). This
family consists of several bacterial putative membrane
proteins.
Length = 140
Score = 30.6 bits (70), Expect = 0.25
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 14/78 (17%)
Query: 60 GLASFFVVAVGGTV-----------IGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAY 108
G ASFF A GG GV+W L + + I ++A++
Sbjct: 28 GWASFF--AAGGGKKGLLKSLATNLSGVLWAALIILGSGLLGGNPLAGYILTGIVAFVMC 85
Query: 109 LTAEIFHMSGILAITFCG 126
L A++ +S I TF G
Sbjct: 86 LQAKVPLLSFIPG-TFLG 102
>gnl|CDD|163462 TIGR03750, conj_TIGR03750, conjugative transfer region protein,
TIGR03750 family. Members of this protein family are
found occasionally on plasmids. Usually, however, they
are found on the bacterial main chromosome in regions
flanked by markers of conjugative transfer and/or
transposition [Mobile and extrachromosomal element
functions, Plasmid functions].
Length = 111
Score = 30.3 bits (69), Expect = 0.25
Identities = 12/63 (19%), Positives = 16/63 (25%), Gaps = 18/63 (28%)
Query: 64 FFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFHMSGILAIT 123
V A G G++ G L + I A L IL +
Sbjct: 23 LGVAAGVGLAAGLVLGLLLALLAGP--------WALIPTGALLG----------PILVVL 64
Query: 124 FCG 126
G
Sbjct: 65 IGG 67
>gnl|CDD|218747 pfam05786, Cnd2, Condensin complex subunit 2. This family consists
of several Barren protein homologues from several
eukaryotic organisms. In Drosophila Barren (barr) is
required for sister-chromatid segregation in mitosis.
barr encodes a novel protein that is present in
proliferating cells and has homologues in yeast and
human. Mitotic defects in barr embryos become apparent
during cycle 16, resulting in a loss of PNS and CNS
neurons. Centromeres move apart at the
metaphase-anaphase transition and Cyclin B is degraded,
but sister chromatids remain connected, resulting in
chromatin bridging. Barren protein localises to
chromatin throughout mitosis. Colocalisation and
biochemical experiments indicate that Barren associates
with Topoisomerase II throughout mitosis and alters the
activity of Topoisomerase II. It has been suggested that
this association is required for proper chromosomal
segregation by facilitating the decatenation of
chromatids at anaphase. This family forms one of the
three non-structural maintenance of chromosomes (SMC)
subunits of the mitotic condensation complex along with
Cnd1 and Cnd3.
Length = 719
Score = 31.7 bits (72), Expect = 0.26
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKK 27
+ KR + R K +K+KK+ K+
Sbjct: 427 RTKRPEPRAAADTKSAAEKQKKRAKE 452
Score = 31.3 bits (71), Expect = 0.34
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKK 30
K +R K E + K +K+KK+ K+
Sbjct: 424 KFRRTKRPEPRAAADTKSAAEKQKKRAKE 452
Score = 27.8 bits (62), Expect = 3.8
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTE 46
K R K+ + + K +K+KK+ K F A E
Sbjct: 424 KFRRTKRPEPRAAADTKSAAEKQKKRAKEPFEIDFGAPLE 463
>gnl|CDD|193409 pfam12936, Kri1_C, KRI1-like family C-terminal. The yeast member
of this family (Kri1p) is found to be required for 40S
ribosome biogenesis in the nucleolus. This is the
C-terminal domain of the family.
Length = 93
Score = 29.9 bits (68), Expect = 0.27
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 9 RENKKKKKKKKKKKKKKKKKKKKKKKR 35
R+ ++++K KKK KK + ++ KKK
Sbjct: 67 RDKEERRKDKKKYGKKARLREWKKKVF 93
Score = 29.1 bits (66), Expect = 0.47
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKK 31
R KE K KKK KK + ++ KKK
Sbjct: 67 RDKEERRKDKKKYGKKARLREWKKKVF 93
Score = 29.1 bits (66), Expect = 0.51
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKRVL 37
K++++K KKK KK + ++ KK+V
Sbjct: 69 KEERRKDKKKYGKKARLREWKKKVF 93
Score = 27.6 bits (62), Expect = 1.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKK 32
R + E +K KKK KK + ++ KKK
Sbjct: 67 RDKEERRKDKKKYGKKARLREWKKKVF 93
Score = 27.6 bits (62), Expect = 1.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKK 33
++E ++K KKK KK + ++ KKK
Sbjct: 68 DKEERRKDKKKYGKKARLREWKKKVF 93
>gnl|CDD|218078 pfam04419, 4F5, 4F5 protein family. Members of this family are
short proteins that are rich in aspartate, glutamate,
lysine and arginine. Although the function of these
proteins is unknown, they are found to be ubiquitously
expressed.
Length = 38
Score = 28.3 bits (64), Expect = 0.28
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKK 33
+ +ER KK KKKKK K + K K
Sbjct: 9 QARERNAKKAAKKKKKGAKSQLKAAAKAL 37
Score = 27.9 bits (63), Expect = 0.38
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 4 KRRKERE-NKKKKKKKKKKKKKKKKKKKKKKK 34
+R + RE N KK KKKKK K + K K
Sbjct: 6 QREQARERNAKKAAKKKKKGAKSQLKAAAKAL 37
Score = 25.6 bits (57), Expect = 2.6
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKK 31
R + + KKKKK K + K K
Sbjct: 9 QARERNAKKAAKKKKKGAKSQLKAAAKAL 37
Score = 25.6 bits (57), Expect = 3.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 9 RENKKKKKKKKKKKKKKKKKKKKKK 33
R N++++ +++ KK KKKKK K
Sbjct: 3 RGNQREQARERNAKKAAKKKKKGAK 27
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 31.4 bits (71), Expect = 0.28
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
KL+R R KK ++ KK KK KK
Sbjct: 1181 KLQRAAARGESGAAKKVSRQAPKKPAPKKTTKK 1213
Score = 28.7 bits (64), Expect = 2.5
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
R K + + + KK ++ KK K+
Sbjct: 1179 REKLQRAAARGESGAAKKVSRQAPKKPAPKKT 1210
Score = 28.7 bits (64), Expect = 2.8
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K + RE ++ + + KK ++ KK
Sbjct: 1171 EDAKAEEAREKLQRAAARGESGAAKKVSRQAPKK 1204
Score = 27.9 bits (62), Expect = 3.8
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K ++ + KK ++ KK KK +
Sbjct: 1181 KLQRAAARGESGAAKKVSRQAPKKPAPKKTTK 1212
Score = 27.5 bits (61), Expect = 5.4
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKK 32
R E KK ++ KK KK KK
Sbjct: 1186 AARGESGAAKKVSRQAPKKPAPKKTTKKA 1214
Score = 27.5 bits (61), Expect = 5.6
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ + +R + + KK ++ KK KK
Sbjct: 1179 REKLQRAAARGESGAAKKVSRQAPKKPAPKK 1209
Score = 26.7 bits (59), Expect = 8.9
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
++ + + + KK ++ KK KK
Sbjct: 1179 REKLQRAAARGESGAAKKVSRQAPKKPAPKK 1209
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 30.5 bits (69), Expect = 0.28
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
KE++ K+ ++K+ K KK+KK+KK+K+V
Sbjct: 97 KEQKEVSKETEEKEAIKAKKEKKEKKEKKVA 127
Score = 30.1 bits (68), Expect = 0.41
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K ++ +E ++K+ K KK+KK+KK+KK +K
Sbjct: 97 KEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEK 129
Score = 28.6 bits (64), Expect = 1.5
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKK 34
E+E K+ K+ ++K+ K KK+KK+KK
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKKEKK 122
Score = 27.8 bits (62), Expect = 2.4
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKK 34
E++K++K+ K+ ++K+ K KK+K
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEK 118
Score = 27.4 bits (61), Expect = 3.5
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
E E ++K+ K+ ++K+ K KK+KK++
Sbjct: 94 ESEKEQKEVSKETEEKEAIKAKKEKKEKK 122
Score = 27.4 bits (61), Expect = 3.6
Identities = 11/30 (36%), Positives = 23/30 (76%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
++ ++ +K+ ++K+ K KK+KK+KK+KK
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 27.4 bits (61), Expect = 3.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKK 34
E K++K+ K+ ++K+ K KK+KK
Sbjct: 93 EESEKEQKEVSKETEEKEAIKAKKEKK 119
Score = 26.6 bits (59), Expect = 6.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K ++ E + K KK+KK+KK+KK +K K
Sbjct: 100 KEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAK 132
>gnl|CDD|219978 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase. Grn1 (yeast)
and GNL3L (human) are putative GTPases which are
required for growth and play a role in processing of
nucleolar pre-rRNA. This family contains a potential
nuclear localisation signal.
Length = 80
Score = 29.5 bits (67), Expect = 0.29
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKK 31
+K E+ +K +K+ KK K KKKK
Sbjct: 8 KKVAEHHRKLRKEAKKNPTWKSKKKK 33
Score = 27.2 bits (61), Expect = 1.8
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKK---KKKKKK 34
R + + KK + +K +K+ KK K KKKK
Sbjct: 1 RLRYKIEKKVAEHHRKLRKEAKKNPTWKSKKKK 33
Score = 26.4 bits (59), Expect = 3.5
Identities = 8/29 (27%), Positives = 22/29 (75%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKK 29
++ K+RK+ E K+++K+ +K ++ + +K+
Sbjct: 51 IEEKKRKQEEEKERRKEARKAERAEARKR 79
Score = 26.4 bits (59), Expect = 3.6
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRV 36
+ + K +KK + +K +K+ KK
Sbjct: 1 RLRYKIEKKVAEHHRKLRKEAKKNP 25
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 30.8 bits (70), Expect = 0.31
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
E + K K K K K KK +++ K++ K V
Sbjct: 96 EPKPKPKPKPKPKPVKKVEEQPKREVKPV 124
Score = 30.8 bits (70), Expect = 0.39
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRVL 37
+ K K K K K K KK +++ KR +
Sbjct: 96 EPKPKPKPKPKPKPVKKVEEQPKREV 121
Score = 30.4 bits (69), Expect = 0.52
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
K + + K K K K KK +++ K++ K
Sbjct: 94 KPEPKPKPKPKPKPKPVKKVEEQPKREVKP 123
Score = 30.0 bits (68), Expect = 0.54
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKR 35
K K K KK +++ K++ K + R
Sbjct: 104 KPKPKPVKKVEEQPKREVKPVEPR 127
Score = 28.5 bits (64), Expect = 2.2
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKK 32
+ K + K K K KK +++ K++ K
Sbjct: 92 IPKPEPKPKPKPKPKPKPVKKVEEQPKREVKP 123
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 31.2 bits (71), Expect = 0.32
Identities = 17/27 (62%), Positives = 17/27 (62%)
Query: 9 RENKKKKKKKKKKKKKKKKKKKKKKKR 35
R N K KKKKKKKKK KK K KK
Sbjct: 249 RANPSKVKKKKKKKKKVVHKKYKTKKL 275
Score = 30.0 bits (68), Expect = 0.66
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
++ + KKKKKKKK KK K KK K+R
Sbjct: 247 AIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRK 281
Score = 29.3 bits (66), Expect = 1.2
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
K++K+ +KK K KK K++K + K KK +R
Sbjct: 260 KKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRR 292
Score = 26.6 bits (59), Expect = 8.1
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K ++ KK K++K + K KK +++++
Sbjct: 264 KVVHKKYKTKKLTGKQRKARVKAKKAQRRER 294
>gnl|CDD|145973 pfam03114, BAR, BAR domain. BAR domains are dimerisation, lipid
binding and curvature sensing modules found in many
different protein families. A BAR domain with an
additional N-terminal amphipathic helix (an N-BAR) can
drive membrane curvature. These N-BAR domains are found
in amphiphysin, endophilin, BRAP and Nadrin. BAR domains
are also frequently found alongside domains that
determine lipid specificity, like pfam00169 and
pfam00787 domains in beta centaurins and sorting nexins
respectively.
Length = 230
Score = 30.8 bits (70), Expect = 0.32
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 4 KRRKERENKK-----KKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTEM 47
K K+ E K+ K+ + KK K KK+ K +++ R FE E
Sbjct: 135 KHIKKLERKRLDYDAKRHRLKKAKSKKELSKAEEELRQAQQKFEESNEE 183
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The
family functions as a highly conserved exonuclease that
is required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing
and export.
Length = 134
Score = 30.4 bits (69), Expect = 0.33
Identities = 10/46 (21%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 4 KRRKERENKKKKKKKKKKKKKK---KKKKKKKKKRVLYHMFEAYTE 46
KR+++R K +++ K+K+++++ +K+ ++++K+ L + E
Sbjct: 29 KRKQQRRKKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKE 74
>gnl|CDD|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777). This
is a family of eukaryotic proteins of unknown function.
Some of the proteins in this family are putative
nucleic acid binding proteins.
Length = 158
Score = 30.2 bits (68), Expect = 0.34
Identities = 8/30 (26%), Positives = 21/30 (70%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
RR++R+ ++ K ++ KK++++K K++
Sbjct: 68 RRRDRKRERDKDAREPKKRERQKLIKEEDL 97
Score = 27.9 bits (62), Expect = 2.5
Identities = 8/33 (24%), Positives = 20/33 (60%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ + RK +K ++ KK++++K K++ + K
Sbjct: 68 RRRDRKRERDKDAREPKKRERQKLIKEEDLEGK 100
>gnl|CDD|177779 PLN00185, PLN00185, 60S ribosomal protein L4-1; Provisional.
Length = 405
Score = 30.9 bits (70), Expect = 0.35
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
M L R KK+K KK+K+ K++ K
Sbjct: 343 MALLAEAARVKAKKEKLAKKRKQVSKEEAAAIKAA 377
Score = 27.8 bits (62), Expect = 3.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K RR + + K KK+K KK+K+ K++
Sbjct: 338 KTARRMALLAEAARVKAKKEKLAKKRKQVSKEE 370
Score = 27.5 bits (61), Expect = 5.9
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
+ K KK+K KK+K+ K++ K
Sbjct: 346 LAEAARVKAKKEKLAKKRKQVSKEEAAAIKAA 377
>gnl|CDD|221466 pfam12220, U1snRNP70_N, U1 small nuclear ribonucleoprotein of
70kDa MW N terminal. This domain is found in
eukaryotes. This domain is about 90 amino acids in
length. This domain is found associated with pfam00076.
This domain is part of U1 snRNP, which is the pre-mRNA
binding protein of the penta-snRNP spliceosome complex.
It extends over a distance of 180 A from its RNA
binding domain, wraps around the core domain of U1
snRNP consisting of the seven Sm proteins and finally
contacts U1-C, which is crucial for 5'-splice-site
recognition.
Length = 94
Score = 29.5 bits (67), Expect = 0.36
Identities = 8/30 (26%), Positives = 21/30 (70%)
Query: 10 ENKKKKKKKKKKKKKKKKKKKKKKKRVLYH 39
E +K++++K++KK+K +KK +++ +
Sbjct: 60 ETWLEKREREKREKKEKLEKKLEEELKEWD 89
Score = 27.2 bits (61), Expect = 2.2
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 6 RKERENKKKKKKKKKKKKKKKKK 28
++ERE ++KK+K +KK +++ K+
Sbjct: 65 KREREKREKKEKLEKKLEEELKE 87
Score = 26.8 bits (60), Expect = 2.6
Identities = 8/26 (30%), Positives = 19/26 (73%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKK 31
E+ ++K++KK+K +KK +++ K+
Sbjct: 62 WLEKREREKREKKEKLEKKLEEELKE 87
Score = 26.8 bits (60), Expect = 2.6
Identities = 8/26 (30%), Positives = 20/26 (76%)
Query: 9 RENKKKKKKKKKKKKKKKKKKKKKKK 34
K++++K++KK+K +KK +++ K+
Sbjct: 62 WLEKREREKREKKEKLEKKLEEELKE 87
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 31.0 bits (71), Expect = 0.38
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
+ E +K+ K +KK+KKKKK+K+K+ L
Sbjct: 605 KAHELIEARKRLNKANEKKEKKKKKQKEKQEEL 637
Score = 29.8 bits (68), Expect = 1.0
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+K + E +K+ K +KK+KKKKK+K+K++
Sbjct: 604 VKAHELIEARKRLNKANEKKEKKKKKQKEKQE 635
Score = 29.4 bits (67), Expect = 1.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K E + +K+ K +KK+KKKKK+K+
Sbjct: 599 GGYASVKAHELIEARKRLNKANEKKEKKKKKQKE 632
Score = 27.9 bits (63), Expect = 4.0
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKKRVLY 38
RK +KK+KKKKK+K+K+++ K V Y
Sbjct: 613 RKRLNKANEKKEKKKKKQKEKQEELKVGDEVKY 645
Score = 27.5 bits (62), Expect = 5.2
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKRV 36
+K +K KKKKKKK K K K + V
Sbjct: 680 EKIQKPKKKKKKKPKTVKPKPRTV 703
Score = 27.5 bits (62), Expect = 5.4
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
K E + K +KK+KKKKK+K+K+++ +V
Sbjct: 605 KAHELIEARKRLNKANEKKEKKKKKQKEKQEELKV 639
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 31.2 bits (71), Expect = 0.38
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K ++ + K K K +K K KKK+KKKKK
Sbjct: 1152 IAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKS 1184
Score = 30.4 bits (69), Expect = 0.64
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ KE+ K K K K K +K K KKK+KKK+
Sbjct: 1151 EIAKEQRLKSKTKGKASKLRKPKLKKKEKKKK 1182
Score = 30.0 bits (68), Expect = 0.92
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K +++R K K K K +K K KKK+KKKK
Sbjct: 1150 KEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKK 1182
Score = 29.6 bits (67), Expect = 1.1
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYH 39
+ K + +K K KKK+KKKKK K KK V+ +
Sbjct: 1162 TKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGN 1197
Score = 28.9 bits (65), Expect = 2.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
KE +++ K K K K K +K K KKK
Sbjct: 1147 VEEKEIAKEQRLKSKTKGKASKLRKPKLKKK 1177
Score = 28.9 bits (65), Expect = 2.2
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ K + +K +K K KKK+KKKKK K K
Sbjct: 1160 SKTKGKASKLRKPKLKKKEKKKKKSSADKSK 1190
Score = 28.9 bits (65), Expect = 2.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
+E + K K K K K +K K KKK+K+
Sbjct: 1152 IAKEQRLKSKTKGKASKLRKPKLKKKEKKK 1181
Score = 28.5 bits (64), Expect = 2.6
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+LK + + + K +K K KKK+KKKKK K +
Sbjct: 1156 QRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSK 1190
Score = 28.5 bits (64), Expect = 3.0
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+K K + + +K K KKK+KKKKK K KK
Sbjct: 1158 LKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKK 1191
Score = 28.1 bits (63), Expect = 3.3
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
++R + + K K K +K K KKK+KKKKK
Sbjct: 1155 EQRLKSKTKGKASKLRKPKLKKKEKKKKKSS 1185
Score = 28.1 bits (63), Expect = 3.5
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K K K R+ K KKK+KKKKK K KK
Sbjct: 1163 KGKASKLRKPKLKKKEKKKKKSSADKSKKASVVG 1196
Score = 28.1 bits (63), Expect = 3.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
++ + ++ K K K K K +K K KKK++
Sbjct: 1150 KEIAKEQRLKSKTKGKASKLRKPKLKKKEK 1179
Score = 28.1 bits (63), Expect = 3.6
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ E + K+++ K K K K K +K K
Sbjct: 1145 EEVEEKEIAKEQRLKSKTKGKASKLRKPKL 1174
Score = 28.1 bits (63), Expect = 3.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
++ K + + K K K K K +K K KKK+KK
Sbjct: 1147 VEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKK 1180
Score = 28.1 bits (63), Expect = 3.8
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K +R K + K K +K K KKK+KKKKK
Sbjct: 1153 AKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSA 1186
Score = 28.1 bits (63), Expect = 4.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
R+ + + K+KKKKK K KK KRV
Sbjct: 1169 LRKPKLKKKEKKKKKSSADKSKKASVVGNSKRV 1201
Score = 27.3 bits (61), Expect = 6.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
+ KKK KK+ + KKKKK +K+
Sbjct: 1301 KPSSPTKKKVKKRLEGSLAALKKKKKSEKKTA 1332
Score = 26.9 bits (60), Expect = 9.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ ++ K+++ K K K K K +K K KK
Sbjct: 1146 EVEEKEIAKEQRLKSKTKGKASKLRKPKLKK 1176
>gnl|CDD|149515 pfam08492, SRP72, SRP72 RNA-binding domain. This region has been
identified as the binding site of the SRP72 protein to
SRP RNA.
Length = 57
Score = 28.6 bits (64), Expect = 0.39
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Query: 10 ENKKKKKKKKKK----KKKKKKKKKKKKKR 35
E KK KK KKK +KKKK KKK+K +
Sbjct: 1 EAKKPKKIAKKKPGTEQKKKKSAKKKRKPK 30
Score = 28.6 bits (64), Expect = 0.44
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKK 31
K+ K+ KK ++KKKK KKK+K K
Sbjct: 3 KKPKKIAKKKPGTEQKKKKSAKKKRKPK 30
Score = 26.6 bits (59), Expect = 2.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKK 32
++ KKK ++KKKK KKK+K K
Sbjct: 6 KKIAKKKPGTEQKKKKSAKKKRKPK 30
>gnl|CDD|240577 cd12950, RRP7_Rrp7p, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p) and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p. Rrp7p is encoded by YCL031C
gene from Saccharomyces cerevisiae. It is an essential
yeast protein involved in pre-rRNA processing and
ribosome assembly. Rrp7p contains an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 128
Score = 29.9 bits (68), Expect = 0.41
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 12/51 (23%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKK----------KKKKRV--LYHMFEA 43
+E +++KK+K+KKKKKKK+ KKK+ L FE
Sbjct: 66 AGEEAGKAAEEEKKEKEKKKKKKKELEDFYRFQLREKKKEEQADLLKKFEE 116
Score = 28.0 bits (63), Expect = 1.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKK 32
E K +++KK+K+KKKKKKK+ +
Sbjct: 64 PAAGEEAGKAAEEEKKEKEKKKKKKKELE 92
Score = 27.6 bits (62), Expect = 2.1
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K E K +++KK+K+KKKKKKK+ +
Sbjct: 62 KGPAAGEEAGKAAEEEKKEKEKKKKKKKELE 92
Score = 26.5 bits (59), Expect = 6.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
++ + K +++KK+K+KKKKKKK+
Sbjct: 61 RKGPAAGEEAGKAAEEEKKEKEKKKKKKKEL 91
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 30.8 bits (70), Expect = 0.43
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFV 66
+E ENK+ KKKKKKKKKKKKK + + Y + ++ + ++ L
Sbjct: 48 QEAENKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSAAFQDNSHIRKLGNWPEQEW 107
Score = 29.3 bits (66), Expect = 1.2
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKK 34
EN++ + K+ KKKKKKKKKKKKK
Sbjct: 44 ISENQEAENKQNNKKKKKKKKKKKKKN 70
Score = 29.3 bits (66), Expect = 1.3
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 10 ENKKKKKKKKKKKKKKKKKKKKKKKRV 36
EN+ K++K++ K+K KKK KK KK V
Sbjct: 7 ENEVKQQKQQNKQKGTKKKNKKSKKDV 33
Score = 29.3 bits (66), Expect = 1.5
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
E + + K+ KKKKKKKKKKKKK
Sbjct: 45 SENQEAENKQNNKKKKKKKKKKKKKNLGEAY 75
Score = 29.3 bits (66), Expect = 1.5
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+L + K+ KKKKKKKKKKKKK +
Sbjct: 42 ELISENQEAENKQNNKKKKKKKKKKKKKNLGEAY 75
Score = 28.5 bits (64), Expect = 2.1
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKK 34
++ NKKKKKKKKKKKKK +
Sbjct: 51 ENKQNNKKKKKKKKKKKKKNLGEAYDLAY 79
Score = 28.1 bits (63), Expect = 3.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKK 34
EN + + K++K++ K+K KKK KK
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKK 28
Score = 27.8 bits (62), Expect = 4.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKK 33
E E K++K++ K+K KKK KK KK
Sbjct: 7 ENEVKQQKQQNKQKGTKKKNKKSKKD 32
Score = 27.0 bits (60), Expect = 6.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKK 30
+ ++ K++ K+K KKK KK KK
Sbjct: 8 NEVKQQKQQNKQKGTKKKNKKSKKD 32
Score = 27.0 bits (60), Expect = 6.9
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKRVLY 38
E ++ ++ + K+ KKKKKKKKKKKK+ L
Sbjct: 42 ELISENQEAENKQNNKKKKKKKKKKKKKNLG 72
>gnl|CDD|219947 pfam08639, SLD3, DNA replication regulator SLD3. The SLD3 DNA
replication regulator is required for loading and
maintenance of Cdc45 on chromatin during DNA
replication.
Length = 437
Score = 30.6 bits (69), Expect = 0.46
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 7 KERENKKKKK-----KKKKKKKKKKKKKKKKKKRVL 37
KE + K K+ + K++K++K+KK KK+ VL
Sbjct: 128 KEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQDLPVL 163
Score = 27.9 bits (62), Expect = 4.0
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKK 32
KL +R + ++ K++K++K+KK KK+
Sbjct: 133 KLLKRSQNLDRSKRRKRRKRKKNKKQDLPVL 163
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 30.8 bits (70), Expect = 0.48
Identities = 13/25 (52%), Positives = 22/25 (88%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRV 36
+K KKKKKK+KKK+++ K+++K R+
Sbjct: 743 EKTKKKKKKEKKKEEEYKREEKARI 767
Score = 29.3 bits (66), Expect = 1.5
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 9 RENKKKKKKKKKKKKKKKKKKKKKKK 34
E K KKKKKK+KKK+++ K+++K +
Sbjct: 741 VEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 28.5 bits (64), Expect = 2.7
Identities = 12/24 (50%), Positives = 21/24 (87%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKR 35
++K KKKKKK+KKK+++ K+++K
Sbjct: 742 EEKTKKKKKKEKKKEEEYKREEKA 765
Score = 27.8 bits (62), Expect = 5.2
Identities = 15/43 (34%), Positives = 29/43 (67%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAY 44
K K ++ ++K KKKKKK+KKK+++ K++++ + EA+
Sbjct: 731 KDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAEAW 773
>gnl|CDD|240578 cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-processing protein
7 homolog A (Rrp7A) and similar proteins. The family
corresponds to the RRP7 domain of Rrp7A, also termed
gastric cancer antigen Zg14, and similar proteins which
are yeast ribosomal RNA-processing protein 7 (Rrp7p)
homologs mainly found in Metazoans. The cellular
function of Rrp7A remains unclear currently. Rrp7A
harbors an N-terminal RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7
domain.
Length = 129
Score = 29.6 bits (67), Expect = 0.52
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
RR + K+ K +K+KKKKKKK+ K
Sbjct: 59 GRRPKTARKESVAAKAAEKEKKKKKKKELK 88
Score = 28.4 bits (64), Expect = 1.4
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K R+ + +K+ K +K+KKKKKKK+ K
Sbjct: 58 KGRRPKTARKESVAAKAAEKEKKKKKKKELK 88
Score = 28.0 bits (63), Expect = 2.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
K+ K +K+ K +K+KKKKKK+ L
Sbjct: 57 KKGRRPKTARKESVAAKAAEKEKKKKKKKEL 87
Score = 27.6 bits (62), Expect = 2.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
K+ + + +K+ K +K+KKKKKKK+
Sbjct: 57 KKGRRPKTARKESVAAKAAEKEKKKKKKKE 86
Score = 27.6 bits (62), Expect = 2.2
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFE 42
++ R +K+ K +K+KKKKKKK+ ++ F+
Sbjct: 56 TKKGRRPKTARKESVAAKAAEKEKKKKKKKELKNFYRFQ 94
Score = 25.7 bits (57), Expect = 9.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKK 27
K R++ K +K+KKKKKKK+ K
Sbjct: 63 KTARKESVAAKAAEKEKKKKKKKELK 88
>gnl|CDD|234533 TIGR04285, nucleoid_noc, nucleoid occlusion protein. This model
describes nucleoid occlusion protein, a close homolog to
ParB chromosome partitioning proteins including Spo0J in
Bacillus subtilis. Its gene often is located near the
gene for the Spo0J ortholog. This protein bind a
specific DNA sequence and blocks cytokinesis from
happening until chromosome segregation is complete.
Length = 255
Score = 30.2 bits (69), Expect = 0.52
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKK 32
K+ E KK +K +K KKKKK++K
Sbjct: 185 KQTEELIKKLLEKPEKPKKKKKRRKG 210
Score = 26.7 bits (60), Expect = 7.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 17 KKKKKKKKKKKKKKKKKKRV 36
KK +K +K KKKKK++K
Sbjct: 192 KKLLEKPEKPKKKKKRRKGF 211
Score = 26.7 bits (60), Expect = 7.5
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 9 RENKKKKKKKKKKKKKKKKKKKKKKK 34
++ ++ KK +K +K KKKKK++K
Sbjct: 185 KQTEELIKKLLEKPEKPKKKKKRRKG 210
>gnl|CDD|176075 cd08693, C2_PI3K_class_I_beta_delta, C2 domain present in class I
beta and delta phosphatidylinositol 3-kinases (PI3Ks).
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases)
regulate cell processes such as cell growth,
differentiation, proliferation, and motility. PI3Ks
work on phosphorylation of phosphatidylinositol,
phosphatidylinositide (4)P (PtdIns (4)P),2 or
PtdIns(4,5)P2. Specifically they phosphorylate the D3
hydroxyl group of phosphoinositol lipids on the inositol
ring. There are 3 classes of PI3Ks based on structure,
regulation, and specificity. All classes contain a C2
domain, a PIK domain, and a kinase catalytic domain.
The members here are class I, beta and delta isoforms of
PI3Ks and contain both a Ras-binding domain and a
p85-binding domain. Class II PI3Ks contain both of
these as well as a PX domain, and a C-terminal C2 domain
containing a nuclear localization signal. C2 domains
fold into an 8-standed beta-sandwich that can adopt 2
structural arrangements: Type I and Type II,
distinguished by a circular permutation involving their
N- and C-terminal beta strands. Many C2 domains are
Ca2+-dependent membrane-targeting modules that bind a
wide variety of substances including bind phospholipids,
inositol polyphosphates, and intracellular proteins.
Most C2 domain proteins are either signal transduction
enzymes that contain a single C2 domain, such as protein
kinase C, or membrane trafficking proteins which contain
at least two C2 domains, such as synaptotagmin 1.
However, there are a few exceptions to this including
RIM isoforms and some splice variants of piccolo/aczonin
and intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. Members have a type-I
topology.
Length = 173
Score = 30.0 bits (68), Expect = 0.52
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 10 ENKKKKKKKKKKKKKKKKKKKK 31
E KK K K+ +K + KKKKKK
Sbjct: 84 EVSKKAKGKRSRKNQTKKKKKK 105
Score = 27.7 bits (62), Expect = 2.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 12 KKKKKKKKKKKKKKKKKKKKK 32
KK K K+ +K + KKKKKK
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKK 105
Score = 27.7 bits (62), Expect = 2.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 13 KKKKKKKKKKKKKKKKKKKKK 33
KK K K+ +K + KKKKKK
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKK 105
Score = 27.7 bits (62), Expect = 2.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 14 KKKKKKKKKKKKKKKKKKKKK 34
KK K K+ +K + KKKKKK
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKK 105
Score = 27.7 bits (62), Expect = 2.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 15 KKKKKKKKKKKKKKKKKKKKRVLY 38
KK K K+ +K + KKKKK+
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKKDDN 108
>gnl|CDD|205480 pfam13300, DUF4078, Domain of unknown function (DUF4078). This
family is found from fungi to humans, but its exact
function is not known.
Length = 88
Score = 28.8 bits (65), Expect = 0.54
Identities = 11/35 (31%), Positives = 26/35 (74%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K + ERE K+++++K+K+K+ ++++KK ++R
Sbjct: 53 EKAREETERERKEREERKEKRKRAIEERRKKIEER 87
Score = 28.4 bits (64), Expect = 0.80
Identities = 10/29 (34%), Positives = 23/29 (79%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKK 31
+ RKERE +K+K+K+ ++++KK ++++
Sbjct: 60 ERERKEREERKEKRKRAIEERRKKIEERR 88
Score = 26.1 bits (58), Expect = 5.6
Identities = 7/28 (25%), Positives = 24/28 (85%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ER+ ++++K+K+K+ ++++KK ++++
Sbjct: 61 RERKEREERKEKRKRAIEERRKKIEERR 88
>gnl|CDD|223898 COG0828, RpsU, Ribosomal protein S21 [Translation, ribosomal
structure and biogenesis].
Length = 67
Score = 28.4 bits (64), Expect = 0.54
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
L+ KERE +K +K+K+KK +K+K K+ R
Sbjct: 28 ILREMKEREFYEKPSEKRKRKKAAARKRKFKRLR 61
Score = 27.7 bits (62), Expect = 1.0
Identities = 11/34 (32%), Positives = 23/34 (67%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
++K R+ E +K+K+KK +K+K K+ +K++
Sbjct: 31 EMKEREFYEKPSEKRKRKKAAARKRKFKRLRKEQ 64
Score = 26.5 bits (59), Expect = 2.1
Identities = 12/35 (34%), Positives = 25/35 (71%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
MK + E+ ++K+K+KK +K+K K+ +K+++R
Sbjct: 32 MKEREFYEKPSEKRKRKKAAARKRKFKRLRKEQQR 66
Score = 25.4 bits (56), Expect = 6.1
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 2 KLKRRKERENKKKKKKKK--------KKKKKKKKKKKKKKKRVLYHMF 41
+ KR+ E+E ++ K++ K+K+KK +K+K KR+
Sbjct: 18 RFKRKVEKEGILREMKEREFYEKPSEKRKRKKAAARKRKFKRLRKEQQ 65
>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are approximately 90 amino acids in
length. There are two completely conserved L residues
that may be functionally important.
Length = 70
Score = 28.5 bits (64), Expect = 0.55
Identities = 7/26 (26%), Positives = 21/26 (80%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKK 32
K E K++++++ +K++++K+++K K
Sbjct: 30 KAEEEKREEEEEARKREERKEREKNK 55
Score = 26.9 bits (60), Expect = 1.7
Identities = 10/35 (28%), Positives = 27/35 (77%), Gaps = 3/35 (8%)
Query: 2 KLKRRK---ERENKKKKKKKKKKKKKKKKKKKKKK 33
KLK +K + E +K++++++ +K++++K+++K K
Sbjct: 21 KLKAKKKELKAEEEKREEEEEARKREERKEREKNK 55
>gnl|CDD|227925 COG5638, COG5638, Uncharacterized conserved protein [Function
unknown].
Length = 622
Score = 30.5 bits (68), Expect = 0.55
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
RK RE ++ +K+++ KK K K K
Sbjct: 438 DRKLRERQENRKERQLKKTKDDSDVDLKDK 467
Score = 30.1 bits (67), Expect = 0.81
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ RKER+ KK K K KK+ KK K+
Sbjct: 446 ENRKERQLKKTKDDSDVDLKDKKESINKKNKK 477
Score = 29.0 bits (64), Expect = 2.0
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ K R+ +EN+K+++ KK K K KK+
Sbjct: 437 LDRKLRERQENRKERQLKKTKDDSDVDLKDKKESI 471
Score = 28.6 bits (63), Expect = 2.7
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 2 KLKRR-KERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
KL R+ +ER+ +K+++ KK K K KK+ +
Sbjct: 436 KLDRKLRERQENRKERQLKKTKDDSDVDLKDKKESI 471
>gnl|CDD|223673 COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport
system, permease component [Inorganic ion transport and
metabolism].
Length = 258
Score = 30.3 bits (69), Expect = 0.56
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 40 MFEAYTEMGHNNVLYVDLLSGLASFFVVAVG---GTVIGVIWGFLTGFVTRFTNEVRVIE 96
+ A E+ + L+ LL AS V +G V+G+ G L G R R+++
Sbjct: 46 VLAALVELLASGELFQHLL---ASLLRVLLGFALAAVLGIPLGILMGLS-RLLE--RLLD 99
Query: 97 PIFIFV 102
P+ +
Sbjct: 100 PLVQVL 105
>gnl|CDD|222863 PHA02540, 61, DNA primase; Provisional.
Length = 337
Score = 30.3 bits (69), Expect = 0.56
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
++R KER K + K K + KK+KK +K
Sbjct: 83 IMERFKERGTGKGRPVPKPKFEFKKEKKVIEK 114
>gnl|CDD|220267 pfam09494, Slx4, Slx4 endonuclease. The Slx4 protein is a
heteromeric structure-specific endonuclease found in
fungi. Slx4 with Slx1 acts as a nuclease on branched
DNA substrates, particularly simple-Y, 5'-flap, or
replication fork structures by cleaving the strand
bearing the 5' non-homologous arm at the branch
junction and thus generating ligatable nicked products
from 5'-flap or replication fork substrates.
Length = 627
Score = 30.3 bits (68), Expect = 0.59
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 9 RENKKKKKKKKKKKKKKKKKKKKKKKRV 36
K+ KKKK KK K +K+ K+K K++
Sbjct: 66 VSGKRVPKKKKIKKPKLRKRTKRKNKKI 93
Score = 28.4 bits (63), Expect = 2.9
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKK 33
+R KKKK KK K +K+ K+K KK K
Sbjct: 69 KRVPKKKKIKKPKLRKRTKRKNKKIK 94
Score = 28.0 bits (62), Expect = 3.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 10 ENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ KKKK KK K +K+ K+K KK +
Sbjct: 69 KRVPKKKKIKKPKLRKRTKRKNKKIK 94
>gnl|CDD|197876 smart00792, Agouti, Agouti protein. The agouti protein regulates
pigmentation in the mouse hair follicle producing a
black hair with a subapical yellow band. A highly
homologous protein agouti signal protein (ASIP) is
present in humans and is expressed at highest levels in
adipose tissue where it may play a role in energy
homeostasis and possibly human pigmentation.
Length = 124
Score = 29.5 bits (66), Expect = 0.62
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 11 NKKKKK--KKKKKKKKKKKKKKKKKKRVL 37
NKK KK ++ +KK +KK+KK VL
Sbjct: 51 NKKPKKISAEEAEKKLLQKKEKKALTNVL 79
>gnl|CDD|221244 pfam11818, DUF3340, C-terminal domain of tail specific protease
(DUF3340). This presumed domain is found at the
C-terminus of tail specific proteases. Its function is
unknown. This family is found in bacteria and
eukaryotes. This presumed domain is typically between 88
to 187 amino acids in length.
Length = 139
Score = 29.5 bits (67), Expect = 0.63
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+R+ ERE +KK+ K++ +++K ++ K
Sbjct: 79 ERKAEREEDEKKRLKRENERRKALGEEPLKS 109
Score = 27.2 bits (61), Expect = 3.3
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K+R +REN+++K ++ K K K++
Sbjct: 89 KKRLKRENERRKALGEEPLKSLDDLPKDKEE 119
>gnl|CDD|241400 cd13246, PH_Scd1, Shape and Conjugation Deficiency 1 Pleckstrin
homology (PH) domain. Fission yeast Scd1 is an
exchange factor for Cdc42 and an effector of Ras1, the
homolog of the human H-Ras. Scd2/Bem1 mediates Cdc42
activation by binding to Scd1/Cdc24 and to Cdc42. Ras1
regulates Scd1/Cdc24/Ral1, which is a putative guanine
nucleotide exchange factor for Cdc42, a member of the
Rho family of Ras-like proteins. Cdc42 then activates
the Shk1/Orb2 protein kinase. Scd1 interacts with Klp5
and Klp6 kinesins to mediate cytokinesis. PH domains
have diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They
share little sequence conservation, but all have a
common fold, which is electrostatically polarized. Less
than 10% of PH domains bind phosphoinositide phosphates
(PIPs) with high affinity and specificity. PH domains
are distinguished from other PIP-binding domains by
their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2
or PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved
across all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 148
Score = 29.5 bits (67), Expect = 0.64
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 9 RENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
+E KKKKKK K K KKKKKK L
Sbjct: 61 KEVKKKKKKSSLKSKSSSSSKKKKKKGPL 89
>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC,
C-terminal domain. This model describes the C-terminal
domain, or longer subunit, of the Firmicutes type VII
secretion protein EssC. This protein (homologous to EccC
in Actinobacteria) and the WXG100 target proteins are
the only homologous parts of type VII secretion between
Firmicutes and Actinobacteria [Protein fate, Protein and
peptide secretion and trafficking].
Length = 1296
Score = 30.3 bits (69), Expect = 0.64
Identities = 9/49 (18%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 4 KRRKERENKKKKKKKK-----KKKKKKKKKKKKKKKRVLYHMFEAYTEM 47
+ +K+ + +K+ + KK+K+ + +K++ VL++ + E+
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRHVLHYHNPSVEEL 132
>gnl|CDD|227238 COG4901, COG4901, Ribosomal protein S25 [Translation, ribosomal
structure and biogenesis].
Length = 107
Score = 29.1 bits (65), Expect = 0.65
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
M K + +E K +K K K KKK KKKKK+
Sbjct: 1 MAPKSQLSKEKKAEKAKAGTAKDKKKWSKKKKKEEA 36
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 30.5 bits (68), Expect = 0.66
Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTEMG 48
+ K R E + K+++ KK+K+++++ +K + Y EM
Sbjct: 1030 EEKERMESLQRAKEEEIGKKEKEREQRIRKTIH-------DNYKEMA 1069
Score = 28.9 bits (64), Expect = 1.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
K+ KERE + +K K+ KK+ KKK+
Sbjct: 1048 KKEKEREQRIRKTIHDNYKEMAKKRLKKKR 1077
Score = 28.9 bits (64), Expect = 1.9
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKK-------KKKKKKKR 35
L+R KE E KK+K+++++ +K KK+ KKKR
Sbjct: 1038 LQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKKR 1077
>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional.
Length = 177
Score = 29.5 bits (67), Expect = 0.70
Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 12/37 (32%)
Query: 11 NKKKKKKKKKKKKKKKKKK------------KKKKKR 35
KKK K+ K K KKK K+KKK
Sbjct: 1 KKKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKH 37
Score = 29.1 bits (66), Expect = 1.1
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 7/38 (18%)
Query: 5 RRKERENKKKKKKKKKKKK-------KKKKKKKKKKKR 35
++K+ K+ K K KKK + +++K+KKK +
Sbjct: 1 KKKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHK 38
Score = 28.7 bits (65), Expect = 1.3
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Query: 2 KLKRRKERENKKKKKKKKKKKKK-----KKKKKKKKKK 34
K K+ + +K K KKK +++ +++K+KKK K
Sbjct: 1 KKKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHK 38
Score = 28.3 bits (64), Expect = 2.1
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 15/51 (29%)
Query: 1 MKLKRRKERENKKKKKKKKKKKK---------------KKKKKKKKKKKRV 36
K K R+E + + +++K+KKK K K K + +KK R+
Sbjct: 16 SKKKTREELDAEARERKRKKKHKGLKSGSRHNEGNTQSKGKGQAQKKDPRI 66
Score = 27.6 bits (62), Expect = 3.8
Identities = 7/31 (22%), Positives = 19/31 (61%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKK 32
K + +++ +++ + +++K+KKK K K
Sbjct: 11 KGMAKSKKKTREELDAEARERKRKKKHKGLK 41
Score = 27.2 bits (61), Expect = 4.9
Identities = 19/69 (27%), Positives = 21/69 (30%), Gaps = 37/69 (53%)
Query: 6 RKERENKKKKKKK------------------------------KKK-------KKKKKKK 28
+ RE K+KKK K KK K K KKK
Sbjct: 26 AEARERKRKKKHKGLKSGSRHNEGNTQSKGKGQAQKKDPRIGSKKPIPLGVEEKVKPKKK 85
Query: 29 KKKKKKRVL 37
K K KK L
Sbjct: 86 KPKSKKPKL 94
>gnl|CDD|240256 PTZ00071, PTZ00071, 40S ribosomal protein S24; Provisional.
Length = 132
Score = 29.2 bits (66), Expect = 0.71
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKK 29
K RKE +N++KK + K+K K KKK
Sbjct: 107 KARKELKNRRKKVRGKEKTKVSGKKK 132
Score = 28.1 bits (63), Expect = 1.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKK 32
K RK R+ K ++KK + K+K K KKK
Sbjct: 102 KKAGRKARKELKNRRKKVRGKEKTKVSGKKK 132
Score = 26.1 bits (58), Expect = 7.2
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K++ R+ +K+ K ++KK + K+K K KK+
Sbjct: 101 KKKAGRKARKELKNRRKKVRGKEKTKVSGKKK 132
>gnl|CDD|218899 pfam06102, DUF947, Domain of unknown function (DUF947). Family of
eukaryotic proteins with unknown function.
Length = 168
Score = 29.6 bits (67), Expect = 0.72
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+++E+E K+ KK KK + KK KKK
Sbjct: 112 KKQEKELIKEGKKPYYLKKSEIKKLVLKKK 141
Score = 28.8 bits (65), Expect = 1.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+K K+ KKK + KK K+ K +KK+KK
Sbjct: 128 LKKSEIKKLVLKKKFDELKKSKQLDKALEKKRKKN 162
Score = 28.8 bits (65), Expect = 1.2
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKK-------KKKKKKKRVL 37
+K + K+RE + K+ KK++K+ K+ KK + KK VL
Sbjct: 95 LKTLKNKDREREILKEHKKQEKELIKEGKKPYYLKKSEIKKLVL 138
Score = 28.0 bits (63), Expect = 2.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
+ LK++ + K K+ K +KK+KK K+KK
Sbjct: 136 LVLKKKFDELKKSKQLDKALEKKRKKNAGKEKK 168
Score = 26.9 bits (60), Expect = 6.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
KL +K+ + KK K+ K +KK+KK K+K+
Sbjct: 135 KLVLKKKFDELKKSKQLDKALEKKRKKNAGKEKK 168
Score = 26.9 bits (60), Expect = 6.2
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
R K +NK ++++ K+ KK++K+ K+ K+
Sbjct: 93 SRLKTLKNKDREREILKEHKKQEKELIKEGKK 124
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 29.5 bits (67), Expect = 0.74
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
+ +E+E KK K++KK K++K+K ++
Sbjct: 90 IYQYFEEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
Score = 29.2 bits (66), Expect = 1.2
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRVLYHMF 41
++K+KKK K++KK K++K+K + +
Sbjct: 96 EEKEKKKAMSKEEKKAIKEEKEKLEEPYGY 125
Score = 28.8 bits (65), Expect = 1.7
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKRVLY 38
E E +KKK K++KK K++K+K ++ Y
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEPYGY 125
>gnl|CDD|217970 pfam04220, YihI, Der GTPase activator (YihI). YihI activates the
GTPase activity of Der, a 50S ribosomal subunit
stability factor. The stimulation is specific to Der as
YihI does not stimulate the GTPase activity of Era or
ObgE. The interaction of YihI with Der requires only
the C-terminal 78 amino acids of YihI. A yihI deletion
mutant is viable and shows a shorter lag period, but
the same post-lag growth rate as a wild-type strain.
yihI is expressed during the lag period. Overexpression
of yihI inhibits cell growth and biogenesis of the 50S
ribosomal subunit. YihI is an unusual, highly
hydrophilic protein with an uneven distribution of
charged residues, resulting in an N-terminal region
with high pI and a C-terminal region with low pI.
Length = 169
Score = 29.2 bits (66), Expect = 0.77
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 15/51 (29%)
Query: 1 MKLKRRKE-----RENKKKKKKKKKK----------KKKKKKKKKKKKKRV 36
K K R E RE K+KKK+K K +K+K +KK R+
Sbjct: 14 GKKKTRYELDQEARERKRKKKRKGLKSGSRHNEESESQKQKGAAQKKDPRI 64
Score = 29.2 bits (66), Expect = 0.96
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 7/36 (19%)
Query: 6 RKERENKKKKKKKKKKK-------KKKKKKKKKKKK 34
RK +N K K KKK + +++K+KKK+K
Sbjct: 1 RKSGKNGPKLAPKGKKKTRYELDQEARERKRKKKRK 36
>gnl|CDD|218797 pfam05890, Ebp2, Eukaryotic rRNA processing protein EBP2. This
family consists of several Eukaryotic rRNA processing
protein EBP2 sequences. Ebp2p is required for the
maturation of 25S rRNA and 60S subunit assembly. Ebp2p
may be one of the target proteins of Rrs1p for executing
the signal to regulate ribosome biogenesis. This family
also plays a role in chromosome segregation.
Length = 270
Score = 29.6 bits (67), Expect = 0.78
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 9/41 (21%)
Query: 4 KRRKERENKKKKKK----KKKKKKKKKKK-----KKKKKKR 35
+ RK+RE KK K+ K +++ K+KK KK KKKR
Sbjct: 136 EARKQRELKKFGKQVQVEKLQERAKEKKDMLEKIKKLKKKR 176
Score = 28.1 bits (63), Expect = 3.0
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 10 ENKKKKKKKKKKKKKKKKKKKKKKKR 35
++ K KKK +K + K KR
Sbjct: 191 DDAAKGGSKKKGRKGGAARGKPNAKR 216
Score = 27.7 bits (62), Expect = 3.4
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 4 KRRKERENKKKKKKKKKKKKKK-----KKKKKKK 32
K RK + K K+K K K KK+ K
Sbjct: 201 KGRKGGAARGKPNAKRKAKDAKFGFGGKKRGSKS 234
>gnl|CDD|202045 pfam01920, Prefoldin_2, Prefoldin subunit. This family includes
prefoldin subunits that are not detected by pfam02996.
Length = 106
Score = 28.7 bits (65), Expect = 0.78
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMF 41
L+ RKE K+ K +K+ +K +K+ ++ K++ LY +F
Sbjct: 67 LEERKETLEKEIKTLEKQLEKLEKELEELKEE--LYKLF 103
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 29.7 bits (67), Expect = 0.79
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKR 35
++ KKK+ +K KK KKK K++
Sbjct: 48 PKQPKKKRPTTPRKPATTKKSKKKDKEK 75
Score = 27.8 bits (62), Expect = 3.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKK 33
K+ + K+ +K KK KKK K+K
Sbjct: 49 KQPKKKRPTTPRKPATTKKSKKKDKEK 75
Score = 27.0 bits (60), Expect = 5.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K ++K +K KK KKK K+K +++K
Sbjct: 49 KQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEK 81
Score = 26.3 bits (58), Expect = 9.4
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKK 31
++ +++ +K KK KKK K+K
Sbjct: 48 PKQPKKKRPTTPRKPATTKKSKKKDKEK 75
>gnl|CDD|241262 cd01228, PH_BCR-related, Breakpoint Cluster Region-related
pleckstrin homology (PH) domain. The BCR gene is one of
the two genes in the BCR-ABL complex, which is
associated with the Philadelphia chromosome, a product
of a reciprocal translocation between chromosomes 22 and
9. BCR is a GTPase-activating protein (GAP) for RAC1
(primarily) and CDC42. The Dbl region of BCR has the
most RhoGEF activity for Cdc42, and less activity
towards Rac and Rho. Since BCR possesses both GAP and
GEF activities, it may function to temporally regulate
the activity of these GTPases. It also displays
serine/threonine kinase activity. The BCR protein
contains multiple domains including an N-terminal kinase
domain, a RhoGEF domain, a PH domain, a C1 domain, a C2
domain, and a C-terminal RhoGAP domain. ABR, a related
smaller protein, is structurally similar to BCR, but
lacks the N-terminal kinase domain and has GAP activity
for both Rac and Cdc42. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 179
Score = 29.6 bits (67), Expect = 0.81
Identities = 6/34 (17%), Positives = 16/34 (47%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K +++ K+ ++KK + +K +K+
Sbjct: 96 KAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
>gnl|CDD|219783 pfam08297, U3_snoRNA_assoc, U3 snoRNA associated. This family of
proteins is associated with U3 snoRNA. U3 snoRNA is
required for nucleolar processing of pre-18S ribosomal
RNA.
Length = 87
Score = 28.2 bits (63), Expect = 0.81
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKR 35
E E KK+KKK K + KK +K+ K K+
Sbjct: 25 EEELKKQKKKNKLRFLKKLEKRPKDVKK 52
Score = 27.8 bits (62), Expect = 1.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
E ++ KK+KKK K + KK +K+ K V
Sbjct: 19 PPPESYEEELKKQKKKNKLRFLKKLEKRPKDV 50
Score = 27.0 bits (60), Expect = 2.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKRV 36
KK+KKK K + KK +K+ K +
Sbjct: 29 KKQKKKNKLRFLKKLEKRPKDVKK 52
Score = 25.8 bits (57), Expect = 6.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 9 RENKKKKKKKKKKKKKKKKKKKKKKKRV 36
++ KK K + KK +K+ K KK V
Sbjct: 30 KQKKKNKLRFLKKLEKRPKDVKKGPVTV 57
Score = 25.5 bits (56), Expect = 7.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
+K+++ K + KK +K+ K KK RVL
Sbjct: 29 KKQKKKNKLRFLKKLEKRPKDVKKGPVTVRVL 60
>gnl|CDD|222649 pfam14284, PcfJ, PcfJ-like protein. The PcfJ-like protein family
includes the E. faecalis PcfJ protein, which is
functionally uncharacterized. It is found in bacteria
and viruses, and is typically between 159 and 170 amino
acids in length. There is a conserved HCV sequence
motif.
Length = 169
Score = 29.2 bits (66), Expect = 0.86
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
+ + K+ + K +K +K+ + +K ++ K K
Sbjct: 35 VAKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 28.0 bits (63), Expect = 2.4
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K + ++E +K +K +K+ + +K ++ K K
Sbjct: 37 KYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 26.1 bits (58), Expect = 8.6
Identities = 6/32 (18%), Positives = 19/32 (59%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ + ++ K+K +K +K+ + +K ++ K +
Sbjct: 36 AKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
>gnl|CDD|215581 PLN03109, PLN03109, ETHYLENE-INSENSITIVE3-like3 protein;
Provisional.
Length = 599
Score = 29.8 bits (67), Expect = 0.87
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+KLKR KER+ K ++ +K K KK + ++KK
Sbjct: 51 IKLKRIKERQKKLQQAALEKSKPKKISDQARRKK 84
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4;
Provisional.
Length = 191
Score = 29.4 bits (66), Expect = 0.89
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKK 34
KKKK +KKK KK KKKKK+K
Sbjct: 52 KKKKTTPRKKKTTKKTKKKKKEK 74
Score = 29.0 bits (65), Expect = 1.1
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRVL 37
K KKKK +KKK KK KKKK+
Sbjct: 49 KTSKKKKTTPRKKKTTKKTKKKKKEK 74
Score = 29.0 bits (65), Expect = 1.3
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKK 34
KK KKKK +KKK KK KKK
Sbjct: 48 KKTSKKKKTTPRKKKTTKKTKKK 70
Score = 28.2 bits (63), Expect = 1.9
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRV 36
KKK +KKK KK KKKKK+K+ V
Sbjct: 53 KKKTTPRKKKTTKKTKKKKKEKEEV 77
Score = 26.7 bits (59), Expect = 6.5
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
K ++K+ +KKK KK KKKKK+K++ +
Sbjct: 49 KTSKKKKTTPRKKKTTKKTKKKKKEKEEVPEL 80
Score = 26.7 bits (59), Expect = 7.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKRV 36
KK KKKK +KKK KK K+
Sbjct: 48 KKTSKKKKTTPRKKKTTKKTKKK 70
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 29.6 bits (66), Expect = 0.90
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 2 KLKRRKERENKKKK--KKKKKKKKKKKKKKKKKKKRVL 37
+ K + E E + KKK K+ KK K +K+ +
Sbjct: 267 EAKNKAEIEAEALASATAVKKKAKEVMKKALKMEKKAI 304
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 29.9 bits (68), Expect = 0.91
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
R+ R ++K ++ + KK + + K K V
Sbjct: 458 RQARLEREKAAREARHKKAAEARAAKDKDAV 488
Score = 27.6 bits (62), Expect = 4.6
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKK 30
+ R ERE ++ + KK + + K K
Sbjct: 459 QARLEREKAAREARHKKAAEARAAKDK 485
>gnl|CDD|224668 COG1754, COG1754, Uncharacterized C-terminal domain of
topoisomerase IA [General function prediction only].
Length = 298
Score = 29.7 bits (67), Expect = 0.94
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+R K KK KK K KK KK K
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAK 285
Score = 27.7 bits (62), Expect = 3.4
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K ++ KK KK KK K KK KK
Sbjct: 264 KPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 27.4 bits (61), Expect = 4.6
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKR 35
ER K KK KK K KK K+
Sbjct: 254 ERRAKGGPGKKPAKKATAAKAKKTTAKK 281
Score = 27.0 bits (60), Expect = 6.8
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
RR + KK KK K KK KK +
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAKK 286
Score = 27.0 bits (60), Expect = 7.0
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K +K K KK KK KK K KK K+
Sbjct: 263 KKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 29.9 bits (67), Expect = 0.96
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
KL+RRK + +K K+ +K+ KK +K+ KK+K++
Sbjct: 305 KLERRKVDDEEKLKESEKELKKLEKELKKEKEE 337
Score = 28.8 bits (64), Expect = 2.3
Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKK----KKKKKRVLYHMFEAYTEMGHNNVLYVD 56
+ + ++ER NK + KK++ +++KK+ + + ++ + G N V +
Sbjct: 982 AEFEEKEERYNKDELKKERLEEEKKELLREIIEETCQRFKEFLELFVSINRGLNKVFFYL 1041
Query: 57 LLSGLA 62
L G A
Sbjct: 1042 ELGGSA 1047
Score = 28.4 bits (63), Expect = 2.9
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTE 46
+ E K ++ K K++ KK + + K+K L Y +
Sbjct: 186 LAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLD 231
Score = 28.0 bits (62), Expect = 4.4
Identities = 9/49 (18%), Positives = 19/49 (38%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTEMGHN 50
+L E ++ K K++ KK + + K+K + + N
Sbjct: 188 ELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLN 236
Score = 27.6 bits (61), Expect = 4.8
Identities = 8/45 (17%), Positives = 22/45 (48%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTE 46
+ + + K++ KK + + K+K + +++ +LY + E
Sbjct: 193 LEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNE 237
Score = 27.2 bits (60), Expect = 7.8
Identities = 7/42 (16%), Positives = 22/42 (52%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFE 42
+LK ++ + ++ KK + + K+K + +++ L ++
Sbjct: 194 EELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKL 235
>gnl|CDD|206228 pfam14058, PcfK, PcfK-like protein. The PcfK-like protein family
includes the Enterococcus faecalis PcfK protein, which
is functionally uncharacterized. This family of proteins
is found in bacteria and viruses. Proteins in this
family are typically between 137 and 257 amino acids in
length. There are two completely conserved residues (D
and L) that may be functionally important.
Length = 136
Score = 28.9 bits (65), Expect = 0.96
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 9 RENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
R+ K ++++ +K +K+ KK KK +
Sbjct: 99 RKEALKAYQQEELRKIQKRSKKSKKAEPV 127
Score = 28.1 bits (63), Expect = 2.0
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ + E + K ++++ +K +K+ KK KK
Sbjct: 92 EEEKAEARKEALKAYQQEELRKIQKRSKKSKK 123
Score = 27.7 bits (62), Expect = 2.0
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
+ K +E K ++++ +K +K+ KK KK + V
Sbjct: 93 EEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPV 127
>gnl|CDD|151665 pfam11223, DUF3020, Protein of unknown function (DUF3020). This
family of fungal proteins is conserved towards the
C-terminus of HMG domains. The function is not known.
Length = 49
Score = 27.2 bits (60), Expect = 0.96
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ + ++N + + KKK KKK K+ K+K
Sbjct: 10 EANSERNKDNDLRSRVKKKAKKKFGKEDSKEKD 42
Score = 27.2 bits (60), Expect = 1.1
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K++ N ++ K + + KKK KKK K
Sbjct: 5 KKKWREANSERNKDNDLRSRVKKKAKKKFGK 35
Score = 26.0 bits (57), Expect = 2.8
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ RK++ + ++ K + + KKK KKK
Sbjct: 2 RERKKKWREANSERNKDNDLRSRVKKKAKKK 32
Score = 25.6 bits (56), Expect = 4.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K K R+ + K + + KKK KKK K+
Sbjct: 5 KKKWREANSERNKDNDLRSRVKKKAKKKFGKED 37
Score = 25.6 bits (56), Expect = 4.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
+R K+ + + + KKK KKK K+ K+K
Sbjct: 14 ERNKDNDLRSRVKKKAKKKFGKEDSKEKDA 43
Score = 25.2 bits (55), Expect = 5.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKK 32
+ +++K RE ++ K + + KKK KKK
Sbjct: 2 RERKKKWREANSERNKDNDLRSRVKKKAKKK 32
>gnl|CDD|185507 PTZ00191, PTZ00191, 60S ribosomal protein L23a; Provisional.
Length = 145
Score = 28.9 bits (65), Expect = 0.98
Identities = 15/35 (42%), Positives = 16/35 (45%)
Query: 11 NKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYT 45
KKK KK K KK K KK+K R F T
Sbjct: 6 KAKKKAKKAAKAAKKGVKVKKRKVRTSVRFFRPKT 40
Score = 28.1 bits (63), Expect = 1.6
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 11 NKKKKKKKKKKKKKKKKKKKKKKKRV 36
KK KKK KK K KK K KK++V
Sbjct: 4 AKKAKKKAKKAAKAAKKGVKVKKRKV 29
Score = 27.4 bits (61), Expect = 3.0
Identities = 14/26 (53%), Positives = 14/26 (53%)
Query: 10 ENKKKKKKKKKKKKKKKKKKKKKKKR 35
KK KKK KK K KK K KKR
Sbjct: 2 APAKKAKKKAKKAAKAAKKGVKVKKR 27
Score = 27.0 bits (60), Expect = 4.0
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKK 34
K K KKK KK K KK K KK+K
Sbjct: 1 KAPAKKAKKKAKKAAKAAKKGVKVKKRK 28
>gnl|CDD|218550 pfam05311, Baculo_PP31, Baculovirus 33KDa late protein (PP31).
Autographa californica nuclear polyhedrosis virus
(AcMNPV) pp31 is a nuclear phosphoprotein that
accumulates in the virogenic stroma, which is the viral
replication centre in the infected-cell nucleus, binds
to DNA, and serves as a late expression factor.
Length = 267
Score = 29.3 bits (66), Expect = 1.1
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
K+K KK KK KK+K+K+
Sbjct: 221 SSPSRKRKAPKKVAKKVAAAKKRKQKRSPP 250
Score = 28.9 bits (65), Expect = 1.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ +K+K KK KK KK+K+KR
Sbjct: 219 QSSSPSRKRKAPKKVAKKVAAAKKRKQKR 247
Score = 28.1 bits (63), Expect = 2.6
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKK 27
++RK + KK KK+K+K+
Sbjct: 223 PSRKRKAPKKVAKKVAAAKKRKQKRS 248
Score = 27.0 bits (60), Expect = 6.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKK 29
RK + KK KK KK+K+K+
Sbjct: 225 RKRKAPKKVAKKVAAAKKRKQKRS 248
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 29.1 bits (66), Expect = 1.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKK 33
E+E KK K++KK K++K K ++
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 27.2 bits (61), Expect = 4.6
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRVLYHMF 41
+K+KKK K++KK K++K K + +
Sbjct: 97 AEKEKKKAMSKEEKKAIKEEKDKLEEPYGY 126
Score = 26.8 bits (60), Expect = 7.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKRVLY 38
E E +KKK K++KK K++K K ++ Y
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEPYGY 126
>gnl|CDD|144738 pfam01254, TP2, Nuclear transition protein 2.
Length = 132
Score = 28.6 bits (63), Expect = 1.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K RK E K K+K K+ K+ K K++ R
Sbjct: 98 KNRKNLEGKVSKRKAVKRSKQVYKTKRRSSGR 129
>gnl|CDD|234874 PRK00955, PRK00955, hypothetical protein; Provisional.
Length = 620
Score = 29.5 bits (67), Expect = 1.1
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+K ++ KK KK+KKK+K+
Sbjct: 589 PPKKPKKKSNKKNNNNNYSSNNSKKRKKKRKK 620
Score = 28.8 bits (65), Expect = 2.0
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
L K+ + K KK KK+KKK++
Sbjct: 586 CLIPPKKPKKKSNKKNNNNNYSSNNSKKRKKKRK 619
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 29.6 bits (67), Expect = 1.2
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
LK ++ E K K++ K K + +K
Sbjct: 17 LKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSA 49
Score = 28.4 bits (64), Expect = 2.9
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K + K+ E +K K++ K K + +K
Sbjct: 15 KRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRK 47
Score = 27.3 bits (61), Expect = 6.8
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
LK+R + + +++K K++ K K +
Sbjct: 13 LKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRS 45
>gnl|CDD|185040 PRK15082, PRK15082, glutathione ABC transporter permease GsiD;
Provisional.
Length = 301
Score = 29.3 bits (66), Expect = 1.2
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 31/138 (22%)
Query: 58 LSGLASFFVVAVG---GTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIF 114
+S A FF VA+G GTV+G++ G+ G+ R +R+ + +F F LA
Sbjct: 101 ISLAAGFFSVAIGAAIGTVLGLLAGYYEGWWDRII--MRICDVLFAFPGILLAI------ 152
Query: 115 HMSGILAITFCGITMKNYVEA---------------NISHKSHTTVKYAMKMLSSSSETI 159
++AI G M N + A N T + + + +S TI
Sbjct: 153 ---AVVAIL--GSGMANVIIAVAIFSIPAFARLVRGNTLVLKQQTYIESARSIGASDWTI 207
Query: 160 IFMFLGISTISDAHVWNT 177
+ + T+S V+ T
Sbjct: 208 LLRHILPGTVSSIVVYFT 225
>gnl|CDD|216985 pfam02349, MSG, Major surface glycoprotein. This is a novel
repeat in Pneumocystis carinii Major surface
glycoprotein (MSG) some members of the alignment have
up to nine repeats of this family, the repeats
containing several conserved cysteines. The MSG of P.
carinii is an important protein in host-pathogen
interactions. Surface glycoprotein A from Pneumocystis
carinii is a main target for the host immune system,
this protein is implicated in the attachment of
Pneumocystis carinii to the host alveolar epithelial
cells, alveolar macrophages, host surfactant and
possibly accounts in part for the hypoxia seen in
Pneumocystis carinii pneumonia (PCP).
Length = 81
Score = 27.8 bits (62), Expect = 1.2
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
KLK+ + E K+ K + KKKKK KK K+K
Sbjct: 39 KLKKDLKLEELLLKELKGELKKKKKCKKALKEK 71
>gnl|CDD|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor. The
spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and
U5) and proteins, catalyzes the excision of introns from
pre-mRNAs in two successive trans-esterification
reactions. Step 2 depends upon integral spliceosome
constituents such as U5 snRNA and Prp8 and
non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22.
ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a
conformational change in the spliceosome that leads to
protection of the 3'ss from targeted RNase H cleavage.
This change, which probably reflects binding of the 3'ss
PyAG in the catalytic centre of the spliceosome,
requires the ordered recruitment of Slu7, Prp18, and
Prp22 to the spliceosome. There is a close functional
relationship between Prp8, Prp18, and Slu7, and Prp18
interacts with Slu7, so that together they recruit Prp22
to the spliceosome. Most members of the family carry a
zinc-finger of the CCHC-type upstream of this domain.
Length = 236
Score = 28.9 bits (65), Expect = 1.3
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKK----KKKKKKKKRVLYHMFEAYTEM 47
++L R+KE+E K++ K +KK+ +K + K K +L E Y E
Sbjct: 158 LELLRKKEKEKKEQLKIQKKQSLLEKYGGEEHLDKPPKELLLGQSEDYVEY 208
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated
C-terminal domain. This domain is found in a number of
different types of plant proteins including NAM-like
proteins.
Length = 147
Score = 28.5 bits (64), Expect = 1.3
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ KR + R+ K+K ++ K K KK++ +K+K+K
Sbjct: 58 ESKRPEGRKKAKEKLRRDKLKAKKEEAEKEKEKE 91
Score = 28.5 bits (64), Expect = 1.4
Identities = 10/29 (34%), Positives = 22/29 (75%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKK 33
R+K +E ++ K K KK++ +K+K+K+++
Sbjct: 65 RKKAKEKLRRDKLKAKKEEAEKEKEKEER 93
Score = 27.7 bits (62), Expect = 2.7
Identities = 9/32 (28%), Positives = 21/32 (65%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
K K R+++ KK++ +K+K+K+++ K +
Sbjct: 69 KEKLRRDKLKAKKEEAEKEKEKEERFMKALAE 100
Score = 27.3 bits (61), Expect = 3.9
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K K + R+ K KK++ +K+K+K+++ K
Sbjct: 67 KAKEKLRRDKLKAKKEEAEKEKEKEERFMKALA 99
Score = 27.0 bits (60), Expect = 5.4
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K+ KE+ + K K KK++ +K+K+K+++ K
Sbjct: 66 KKAKEKLRRDKLKAKKEEAEKEKEKEERFMK 96
>gnl|CDD|204610 pfam11207, DUF2989, Protein of unknown function (DUF2989). Some
members in this bacterial family of proteins are
annotated as lipoproteins however this cannot be
confirmed.
Length = 203
Score = 28.8 bits (65), Expect = 1.3
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 27 KKKKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFF 65
K+ K ++LYH E N ++L LAS +
Sbjct: 153 KRDPDKTIQLLYHALELSNPGDKFN---PEILLSLASIY 188
>gnl|CDD|146145 pfam03357, Snf7, Snf7. This family of proteins are involved in
protein sorting and transport from the endosome to the
vacuole/lysosome in eukaryotic cells.
Vacuoles/lysosomes play an important role in the
degradation of both lipids and cellular proteins. In
order to perform this degradative function,
vacuoles/lysosomes contain numerous hydrolases which
have been transported in the form of inactive
precursors via the biosynthetic pathway and are
proteolytically activated upon delivery to the
vacuole/lysosome. The delivery of transmembrane
proteins, such as activated cell surface receptors to
the lumen of the vacuole/lysosome, either for
degradation/downregulation, or in the case of
hydrolases, for proper localisation, requires the
formation of multivesicular bodies (MVBs). These late
endosomal structures are formed by invaginating and
budding of the limiting membrane into the lumen of the
compartment. During this process, a subset of the
endosomal membrane proteins is sorted into the forming
vesicles. Mature MVBs fuse with the vacuole/lysosome,
thereby releasing cargo containing vesicles into its
hydrolytic lumen for degradation. Endosomal proteins
that are not sorted into the intralumenal MVB vesicles
are either recycled back to the plasma membrane or
Golgi complex, or remain in the limiting membrane of
the MVB and are thereby transported to the limiting
membrane of the vacuole/lysosome as a consequence of
fusion. Therefore, the MVB sorting pathway plays a
critical role in the decision between recycling and
degradation of membrane proteins. A few archaeal
sequences are also present within this family.
Length = 169
Score = 28.8 bits (65), Expect = 1.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
+L +++E KK KK + + KK KK K +L
Sbjct: 12 ELDKKQESLEKKIKKLEAEIKKLAKKGNKDAALILL 47
>gnl|CDD|237599 PRK14058, PRK14058, acetylglutamate/acetylaminoadipate kinase;
Provisional.
Length = 268
Score = 29.1 bits (66), Expect = 1.3
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 80 FLT---GFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFHMSGILAITFCGI 127
F+T G +R+T+ +E +FI MA + E G+ A+ G+
Sbjct: 54 FVTSPSGVTSRYTDR-ETLE-VFIMAMALINKQLVERLQSLGVNAVGLSGL 102
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 28.9 bits (65), Expect = 1.4
Identities = 9/35 (25%), Positives = 28/35 (80%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K RR++RE ++++++++KK ++K++ ++K+++
Sbjct: 13 EKQARRQQREAEEEEREERKKLEEKREGERKEEEE 47
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 29.5 bits (67), Expect = 1.4
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEA 43
+LK + ++K+KKK+KKK KKKK K + ++ + EA
Sbjct: 387 QLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIYKVLKEA 428
Score = 29.1 bits (66), Expect = 1.5
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+LK+ K + ++K+KKK+KKK KKKK K
Sbjct: 384 ELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKV 416
>gnl|CDD|235501 PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.
Length = 631
Score = 29.3 bits (67), Expect = 1.4
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 3 LKRRKERENKKKKKKKKKKKKK 24
+K + R KK K+KKK
Sbjct: 377 IKAAQARLRAAKKVKRKKKTSG 398
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 29.4 bits (66), Expect = 1.4
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
+ +KE E K K+++ ++++K++KKKK K+V
Sbjct: 45 EEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKV 77
Score = 28.6 bits (64), Expect = 2.7
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
KE E ++++K++KKKK KK K+ + +L
Sbjct: 57 KEEEVDEEEEKEEKKKKTKKVKETTTEWELL 87
Score = 27.8 bits (62), Expect = 4.0
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Query: 7 KERENKKKKKKKK------KKKKKKKKKKKKKKKRVLY 38
+E++ +++K K +++K++KKKK KK K
Sbjct: 45 EEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTT 82
Score = 27.4 bits (61), Expect = 5.1
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKK 30
+ +E + +++K++KKKK KK K+
Sbjct: 53 KTTDKEEEVDEEEEKEEKKKKTKKVKETTT 82
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 29.4 bits (65), Expect = 1.5
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 10 ENKKKKKKKKKKKK----KKKKKKKKKKKRVLYHMFEAYTEMGHNNVLYVDLL 58
++ KKKKKKKKK K K++ K + A + L+ D L
Sbjct: 103 DDTPSKKKKKKKKKGWFWAKSKQESKTIETEEIIDVGASVNQANETRLFDDTL 155
>gnl|CDD|240253 PTZ00068, PTZ00068, 60S ribosomal protein L13a; Provisional.
Length = 202
Score = 28.9 bits (65), Expect = 1.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKK 30
++RKER KKK K +K K+ +KK
Sbjct: 157 EKRKERAAAYYKKKVKLRKAWKEARKK 183
>gnl|CDD|218437 pfam05107, DUF694, Family of unknown function (DUF694). Family of
hypothetical bacterial proteins.
Length = 278
Score = 28.7 bits (65), Expect = 1.5
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
+L R +R + K+KKKKKKKKKKK++ ++
Sbjct: 74 ELYERADRAEELLKEKKKKKKKKKKKEELREW 105
Score = 28.0 bits (63), Expect = 3.1
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 11 NKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAY 44
+ + ++ K+KKKKKKKKKKK+ + M E +
Sbjct: 77 ERADRAEELLKEKKKKKKKKKKKEELREWMCEKF 110
>gnl|CDD|214697 smart00498, FH2, Formin Homology 2 Domain. FH proteins control
rearrangements of the actin cytoskeleton, especially in
the context of cytokinesis and cell polarisation.
Members of this family have been found to interact with
Rho-GTPases, profilin and other actin-assoziated
proteins. These interactions are mediated by the
proline-rich FH1 domain, usually located in front of
FH2 (but not listed in SMART). Despite this cytosolic
function, vertebrate formins have been assigned
functions within the nucleus. A set of Formin-Binding
Proteins (FBPs) has been shown to bind FH1 with their
WW domain.
Length = 392
Score = 28.9 bits (65), Expect = 1.6
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 9 RENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMF 41
+E K K +KK KKK ++ ++L
Sbjct: 49 KEKTKSASKDVSEKKSILKKKASQEFKILDPKR 81
>gnl|CDD|217787 pfam03910, Adeno_PV, Adenovirus minor core protein PV.
Length = 336
Score = 29.0 bits (65), Expect = 1.6
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKK 29
R ++ K +K K+ KK+KK+++K
Sbjct: 20 GPRPVKDEAKPRKIKRVKKRKKREEK 45
Score = 27.9 bits (62), Expect = 3.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKRVLYHMFE 42
K + K +K K+ KK+KK+++K L E
Sbjct: 24 VKDEAKPRKIKRVKKRKKREEKDELDDEVE 53
Score = 27.5 bits (61), Expect = 5.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 9 RENKKKKKKKKKKKKKKKKKKKKKK 33
K + K +K K+ KK+KK+++K
Sbjct: 21 PRPVKDEAKPRKIKRVKKRKKREEK 45
>gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisation of
microtubules varies with the cell type and is
presumably controlled by tissue-specific
microtubule-associated proteins (MAPs). The 115-kDa
epithelial MAP (E-MAP-115/MAP7) has been identified as
a microtubule-stabilising protein predominantly
expressed in cell lines of epithelial origin. The
binding of this microtubule associated protein is
nucleotide independent.
Length = 171
Score = 28.5 bits (63), Expect = 1.7
Identities = 7/32 (21%), Positives = 27/32 (84%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
KRR+ RE ++++++++++++++ + ++++ KR
Sbjct: 31 KRRQAREQREQEEQERREQEEQDRLEREELKR 62
>gnl|CDD|147328 pfam05095, DUF687, Protein of unknown function (DUF687). This
family contains several uncharacterized Chlamydia
proteins.
Length = 542
Score = 28.9 bits (65), Expect = 1.7
Identities = 10/53 (18%), Positives = 15/53 (28%)
Query: 46 EMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPI 98
E + G GG V+ + G L G + R+ P
Sbjct: 424 EQRRVVRSQLAARRGSIGALSTVCGGLVLALFIGILNGISLQLPEACRLNRPS 476
>gnl|CDD|220357 pfam09716, ETRAMP, Malarial early transcribed membrane protein
(ETRAMP). These sequences represent a family of
proteins from the malaria parasite Plasmodium
falciparum, several of which have been shown to be
expressed specifically in the ring stage as well as the
rodent parasite Plasmodium yoelii. A homologue from
Plasmodium chabaudi was localized to the
parasitophorous vacuole membrane. Members have an
initial hydrophobic, Phe/Tyr-rich, stretch long enough
to span the membrane, a highly charged region rich in
Lys, a second putative transmembrane region and a
second highly charged, low complexity sequence region.
Some members have up to 100 residues of additional
C-terminal sequence. These genes have been shown to be
found in the sub-telomeric regions of both Plasmodium
falciparum and P. yoelii chromosomes.
Length = 82
Score = 27.2 bits (61), Expect = 1.7
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKRVLY 38
KKKK KK KK +KKKK KK+++
Sbjct: 25 NNVVAKKKKLKKLKKIDDDLEKKKKNKKKIII 56
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 28.9 bits (65), Expect = 1.8
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 12/46 (26%)
Query: 4 KRRKERE-----NKKKKKKK-------KKKKKKKKKKKKKKKKRVL 37
K +K++E NK+K +KK KK+ + K+K+ + K++VL
Sbjct: 261 KGKKDKEGKSTTNKEKARKKNFMMTLHKKRVRGKQKRSLRDKQKVL 306
Score = 27.7 bits (62), Expect = 4.3
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 10/41 (24%)
Query: 6 RKERENKKKKKKKKKKKKK----KKKKKKK------KKKRV 36
R++RE +K KK K+ K K+K +KK KKRV
Sbjct: 251 REDREKFGSRKGKKDKEGKSTTNKEKARKKNFMMTLHKKRV 291
>gnl|CDD|203462 pfam06476, DUF1090, Protein of unknown function (DUF1090). This
family consists of several bacterial proteins of unknown
function and is known as YqjC in E. coli.
Length = 115
Score = 27.6 bits (62), Expect = 1.8
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 11/40 (27%)
Query: 6 RKERENKKKKKKKK-----------KKKKKKKKKKKKKKK 34
R ER+ K ++K+++ + K K +KK++K
Sbjct: 65 RAERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRK 104
Score = 26.5 bits (59), Expect = 4.9
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+R +E + + K K +KK++K + + +
Sbjct: 81 EREQELKEAQAKGDADKIEKKQRKLAEAQAE 111
Score = 26.1 bits (58), Expect = 7.1
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 2 KLKRRK--EREN--KKKKKKKKKKKKKKKKKKKKKKKRVL 37
+ K ++ ERE K+ + K K +KK++K + + L
Sbjct: 73 EEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAEL 112
>gnl|CDD|223005 PHA03176, PHA03176, UL43 envelope protein; Provisional.
Length = 420
Score = 28.7 bits (64), Expect = 1.9
Identities = 31/127 (24%), Positives = 48/127 (37%), Gaps = 27/127 (21%)
Query: 67 VAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFHMSGILAITFCG 126
A G + I GFL F R T +R E + + IF + +A
Sbjct: 82 RAYGNCTVCAIAGFLATFAARLT--IRSSE-----TLMLIGKPAQFIFALIASIA----- 129
Query: 127 ITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLG----------ISTISDAHVWN 176
T+ N IS+ ++ T A+++ S F+ LG I+T D W
Sbjct: 130 DTLINNEALAISNTTYKTALRAIEVTS----LACFVMLGAIIASYHYVCIATSGDL-TWK 184
Query: 177 TAFVILT 183
F++LT
Sbjct: 185 AGFLMLT 191
Score = 28.3 bits (63), Expect = 2.7
Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 14/86 (16%)
Query: 110 TAEIFHMSGILAITFCGITMKNYVEANISHKSHTT-------VKYAMKMLSSSSETII-- 160
+ ++ LA+T + + ++ N ++ + T +A ++ SSET++
Sbjct: 55 VCSLVSIAAHLAVTVSCVALIPLIDQNRAYGNCTVCAIAGFLATFAARLTIRSSETLMLI 114
Query: 161 -----FMFLGISTISDAHVWNTAFVI 181
F+F I++I+D + N A I
Sbjct: 115 GKPAQFIFALIASIADTLINNEALAI 140
>gnl|CDD|233605 TIGR01865, cas_Csn1, CRISPR-associated protein Cas9/Csn1, subtype
II/NMEMI. CRISPR loci appear to be mobile elements with
a wide host range. This model represents a protein found
only in CRISPR-containing species, near other
CRISPR-associated proteins (cas), as part of the NMENI
subtype of CRISPR/Cas locus. The species range so far
for this protein is animal pathogens and commensals only
[Mobile and extrachromosomal element functions, Other].
Length = 805
Score = 28.9 bits (65), Expect = 1.9
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 9 RENKKKKKKKKKKKKKKKKKKKKKKK 34
RE + K+ K++ KK + K K+
Sbjct: 524 REEQGTNFGKRNSKERYKKNEDKIKE 549
>gnl|CDD|119322 cd06580, TM_PBP1_transp_TpRbsC_like, Transmembrane subunit (TM) of
Treponema pallidum (Tp) RbsC-1, RbsC-2 and related
proteins. This is a functionally uncharacterized
subgroup of TMs which belong to a larger group of TMs of
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporters, which are mainly involved
in the uptake of branched-chain amino acids (AAs) or in
the uptake of monosaccharides including ribose,
galactose, and arabinose, and which generally bind type
1 PBPs. PBP-dependent ABC transporters consist of a PBP,
two TMs, and two cytoplasmic ABCs, and are mainly
involved in importing solutes from the environment. The
solute is captured by the PBP, which delivers it to a
gated translocation pathway formed by the two TMs. The
two ABCs bind and hydrolyze ATP and drive the transport
reaction.
Length = 234
Score = 28.6 bits (65), Expect = 2.0
Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 22/120 (18%)
Query: 52 VLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRF--TNEVRVIEPIFIFVMAYLA-Y 108
V L S + + + G +W L + NEV I ++ Y+A
Sbjct: 38 VALYLGLPATGSLPLGLLAAALAGALWALLPALLKAKLGVNEV-----ISGLMLNYIALG 92
Query: 109 LTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGIST 168
LT+ + ++ +L I + + T ++ + + + GI+
Sbjct: 93 LTSYLLLLALLLVI-LVWLLLY-----------RTRFGLRLRAVGENPRAARYA--GINV 138
>gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function
unknown].
Length = 869
Score = 28.9 bits (64), Expect = 2.0
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 1 MKLKR----RKERENKKKKKKKKKKKKKKKKKKKKKKK 34
++ R R+ER+ K+ K K K +K +K +K+K+
Sbjct: 378 LRFMRELMFREERKAKRVAKIKSKTYRKIRKNRKEKEM 415
Score = 27.7 bits (61), Expect = 4.4
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 9 RENKKKKKKKKKKKK--KKKKKKKKKKKRVL 37
RE +K K+ K K K +K +K +K+K+ L
Sbjct: 387 REERKAKRVAKIKSKTYRKIRKNRKEKEMAL 417
Score = 27.7 bits (61), Expect = 5.1
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
L R+ R + KKK ++ ++ K+ KKK ++
Sbjct: 637 LDRKMRRIKRIKKKAYRRIRRDKRLKKKMPEE 668
Score = 27.7 bits (61), Expect = 5.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
RK R K+ KKK ++ ++ K+ KKK +
Sbjct: 639 RKMRRIKRIKKKAYRRIRRDKRLKKKMPEEE 669
>gnl|CDD|239572 cd03490, Topoisomer_IB_N_1, Topoisomer_IB_N_1: A subgroup of the
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB. Topo IB proteins include the
monomeric yeast and human topo I and heterodimeric topo
I from Leishmania donvanni. Topo I enzymes are divided
into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topos I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I have putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 217
Score = 28.3 bits (63), Expect = 2.0
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTEMGHNN 51
+K E E +KKK K++K+ KKK++ K++ Y + + E +N
Sbjct: 87 SLIKNHLEEEKEKKKNLNKEEKEAKKKERAKREYPFNYALVDWIREKVSSN 137
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 28.8 bits (65), Expect = 2.0
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 11 NKKKKKKKKKKKKKKKKKKKKKKKRV 36
+KKK++KK+++K+ K+ R
Sbjct: 175 PGHSSDSEKKKQRKKQRRKRSKELRE 200
Score = 28.1 bits (63), Expect = 3.5
Identities = 7/24 (29%), Positives = 17/24 (70%)
Query: 10 ENKKKKKKKKKKKKKKKKKKKKKK 33
+ +KKK++KK+++K+ K+ +
Sbjct: 176 GHSSDSEKKKQRKKQRRKRSKELR 199
>gnl|CDD|220597 pfam10139, Virul_Fac, Putative bacterial virulence factor. Members
of this family of prokaryotic proteins include various
putative virulence factor effector proteins. Their exact
function is, as yet, unknown.
Length = 852
Score = 28.9 bits (65), Expect = 2.2
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 82 TGFVTRFTNEVRVIEPIF 99
TG VTRFT F
Sbjct: 94 TGLVTRFTRTAAPNPAGF 111
>gnl|CDD|219572 pfam07780, Spb1_C, Spb1 C-terminal domain. This presumed domain is
found at the C-terminus of a family of FtsJ-like
methyltransferases. Members of this family are involved
in 60S ribosomal biogenesis.
Length = 212
Score = 28.4 bits (64), Expect = 2.2
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 6 RKERENKKKKKKK----KKKKKKKKKKKKKKKKRV 36
+K ++ KKK+KK KK K K + K K +
Sbjct: 158 KKAKKKKKKRKKTYVVAKKGNKGKAGRPKGVKGKY 192
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein
[Function unknown].
Length = 294
Score = 28.5 bits (64), Expect = 2.2
Identities = 10/38 (26%), Positives = 24/38 (63%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFE 42
R E++ K + K+K K+++K+++ K++ +Y F+
Sbjct: 238 RELEKKIKALRAKEKAAKRREKREELKERAEEIYEKFK 275
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 28.3 bits (63), Expect = 2.2
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
K ++ K K KK KK KK KK K V
Sbjct: 233 KTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAV 267
Score = 26.8 bits (59), Expect = 7.5
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K+ + KK KKK K KK K
Sbjct: 213 KKASAKAKSAAKKVSKKKAAKTAVSAKKAAK 243
Score = 26.8 bits (59), Expect = 8.6
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K + K KK KK KK K KK KK
Sbjct: 243 KTAAKAAKKAKKTAKKALKKAAKAVKKAAKK 273
Score = 26.8 bits (59), Expect = 8.7
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K K++ K KK K K KK KK
Sbjct: 225 KVSKKKAAKTAVSAKKAAKTAAKAAKKAKKT 255
Score = 26.8 bits (59), Expect = 9.4
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKK 32
++ + K KK KKK K KK
Sbjct: 212 AKKASAKAKSAAKKVSKKKAAKTAVSAKK 240
>gnl|CDD|192292 pfam09429, Wbp11, WW domain binding protein 11. The WW domain is
a small protein module with a triple-stranded
beta-sheet fold. This is a family of WW domain binding
proteins.
Length = 78
Score = 26.9 bits (60), Expect = 2.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 9 RENKKKKKKKKKKKKKKKKKKKKKKK 34
+E KKK+ KK K +++ +++ K KK
Sbjct: 12 KEQKKKELKKNKAERQARREAKLAKK 37
Score = 25.3 bits (56), Expect = 7.0
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 16 KKKKKKKKKKKKKKKKKKKR 35
+K++KKK+ KK K +++ +R
Sbjct: 11 RKEQKKKELKKNKAERQARR 30
Score = 25.3 bits (56), Expect = 7.1
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKK 29
K +K++E KK K +++ +++ K KK
Sbjct: 12 KEQKKKELKKNKAERQARREAKLAKK 37
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 27.9 bits (63), Expect = 2.3
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRV 36
K+KKKKKKKKK+ + ++KKKK V
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVV 106
Score = 27.5 bits (62), Expect = 3.0
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKRVL 37
K+KKKKKKKKK+ + ++KKKK V+
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVV 106
Score = 26.4 bits (59), Expect = 8.6
Identities = 11/31 (35%), Positives = 23/31 (74%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
KR+K+++ KKK+ + ++KKKK +++K+
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKE 112
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 28.3 bits (64), Expect = 2.5
Identities = 8/42 (19%), Positives = 27/42 (64%), Gaps = 6/42 (14%)
Query: 2 KLKRRKERENKK------KKKKKKKKKKKKKKKKKKKKKRVL 37
+ K R+ E K +K +++++++ +++++K++K+R +
Sbjct: 143 EEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREV 184
Score = 27.6 bits (62), Expect = 4.6
Identities = 10/47 (21%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVL-YHMFEAYTEM 47
L +ERE K+K+++++ + +++ ++++K+R Y E
Sbjct: 54 ALAEEEERERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQEREQ 100
Score = 26.8 bits (60), Expect = 7.6
Identities = 8/36 (22%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
Query: 5 RRKERENKKKKKKKKKK-----KKKKKKKKKKKKKR 35
E + K++K+KK ++ +++ ++K+++K+R
Sbjct: 112 DEAEAQEKREKQKKLREEIDEFNEERIERKEEEKER 147
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 28.1 bits (63), Expect = 2.5
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
++R E E ++ + K + ++ + K+K K+
Sbjct: 128 EKRDEEERERLLRAAKSRSEQSRLKQKAKE 157
Score = 27.7 bits (62), Expect = 3.1
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ + +ERE + K + ++ + K+K K+ +K
Sbjct: 127 EEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKE 161
>gnl|CDD|216298 pfam01101, HMG14_17, HMG14 and HMG17.
Length = 93
Score = 27.1 bits (60), Expect = 2.5
Identities = 17/41 (41%), Positives = 17/41 (41%), Gaps = 10/41 (24%)
Query: 4 KRRKER----------ENKKKKKKKKKKKKKKKKKKKKKKK 34
KRR R E K KK KKKK K KK K K
Sbjct: 19 KRRSARLSAKPAPPKPEPKPKKAAAKKKKPAVKGKKGAKGK 59
Score = 25.5 bits (56), Expect = 8.9
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKK 34
KK KKKK K KK K KK+
Sbjct: 39 KKAAAKKKKPAVKGKKGAKGKKE 61
>gnl|CDD|226814 COG4379, COG4379, Mu-like prophage tail protein gpP [General
function prediction only].
Length = 386
Score = 28.3 bits (63), Expect = 2.5
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
++ E K+K +K K KK KK + +
Sbjct: 351 PKKAEAARKRKGDRKGVSHKAKKGGKKNQAE 381
Score = 27.9 bits (62), Expect = 3.5
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKRV 36
+K+K +K K KK KK
Sbjct: 357 ARKRKGDRKGVSHKAKKGGKKNQ 379
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 28.2 bits (63), Expect = 2.6
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 10 ENKKKKKKKKKKKKKKKKKKKKKK 33
K K KK KK KKKKKKK+
Sbjct: 194 HYKGDKSSAKKDKKSKKKKKKKRS 217
Score = 26.3 bits (58), Expect = 9.7
Identities = 14/21 (66%), Positives = 14/21 (66%)
Query: 15 KKKKKKKKKKKKKKKKKKKKR 35
K K KK KK KKKKKKKR
Sbjct: 196 KGDKSSAKKDKKSKKKKKKKR 216
Score = 26.3 bits (58), Expect = 9.7
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 11 NKKKKKKKKKKKKKKKKKKKKKKK 34
+ K K KK KK KKKKKKK+
Sbjct: 194 HYKGDKSSAKKDKKSKKKKKKKRS 217
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 28.2 bits (63), Expect = 2.6
Identities = 7/26 (26%), Positives = 20/26 (76%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKK 29
K +KER +K++++++K +++K ++
Sbjct: 153 KIKKERAEEKEREEEEKAAEEEKARE 178
Score = 27.0 bits (60), Expect = 6.4
Identities = 8/29 (27%), Positives = 22/29 (75%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+E E KK++ ++K++++++K +++K R
Sbjct: 149 RELEKIKKERAEEKEREEEEKAAEEEKAR 177
>gnl|CDD|216337 pfam01159, Ribosomal_L6e, Ribosomal protein L6e.
Length = 108
Score = 27.2 bits (61), Expect = 2.6
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 4 KRRKERENKKKKK---KKKKKKKKKKKKKKKKKKRV 36
KR K+++ KK + +KK+KK+ +++K +K V
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKAV 73
>gnl|CDD|221012 pfam11169, DUF2956, Protein of unknown function (DUF2956). This
family of proteins with unknown function appears to be
restricted to Gammaproteobacteria.
Length = 103
Score = 27.3 bits (61), Expect = 2.6
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 10 ENKKKKKKKKKKKKKKKKKKKKKKKR 35
E KK++K K ++ K +K++ K K+R
Sbjct: 38 EYKKQQKAKAREADKARKQQLKAKQR 63
>gnl|CDD|215209 PLN02369, PLN02369, ribose-phosphate pyrophosphokinase.
Length = 302
Score = 28.1 bits (63), Expect = 2.6
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 45 TEMGHNNVLYVDLLSGLA-SFFVVAV----GGTVI 74
TE G + VL DL SG + +F + V G VI
Sbjct: 105 TEAGADRVLACDLHSGQSMGYFDIPVDHVYGQPVI 139
>gnl|CDD|240377 PTZ00352, PTZ00352, 60S ribosomal protein L13; Provisional.
Length = 212
Score = 28.1 bits (63), Expect = 2.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKK 29
R+ + N K KK+KKK+ K+KKK
Sbjct: 189 RQAKLNAKFVGKKEKKKQAKEKKK 212
Score = 26.6 bits (59), Expect = 8.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKK 32
R R+ K K KK+KKK+ K+KKK
Sbjct: 186 RTLRQAKLNAKFVGKKEKKKQAKEKKK 212
>gnl|CDD|233160 TIGR00869, sec62, protein translocation protein, Sec62 family.
Members of the NSCC2 family have been sequenced from
various yeast, fungal and animals species including
Saccharomyces cerevisiae, Drosophila melanogaster and
Homo sapiens. These proteins are the Sec62 proteins,
believed to be associated with the Sec61 and Sec63
constituents of the general protein secretary systems of
yeast microsomes. They are also the non-selective cation
(NS) channels of the mammalian cytoplasmic membrane. The
yeast Sec62 protein has been shown to be essential for
cell growth. The mammalian NS channel proteins has been
implicated in platelet derived growth factor(PGDF)
dependent single channel current in fibroblasts. These
channels are essentially closed in serum deprived
tissue-culture cells and are specifically opened by
exposure to PDGF. These channels are reported to exhibit
equal selectivity for Na+, K+ and Cs+ with low
permeability to Ca2+, and no permeability to anions
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 232
Score = 28.0 bits (62), Expect = 2.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 11 NKKKKKKKKKKKKKKKKKKKKKK 33
K K KKK K KK KKK+ K+
Sbjct: 207 EKDKYSYKKKLKSKKLKKKQAKR 229
Score = 26.8 bits (59), Expect = 6.4
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKR 35
K K KKK K KK KKK+ KR
Sbjct: 208 KDKYSYKKKLKSKKLKKKQAKR 229
Score = 26.8 bits (59), Expect = 6.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 10 ENKKKKKKKKKKKKKKKK 27
KKK K KK KKK+ K+
Sbjct: 212 SYKKKLKSKKLKKKQAKR 229
Score = 26.8 bits (59), Expect = 7.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKK 34
K K KKK K KK KKK+ K+
Sbjct: 208 KDKYSYKKKLKSKKLKKKQAKR 229
Score = 26.4 bits (58), Expect = 8.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 10 ENKKKKKKKKKKKKKKKKKKKKK 32
E K KKK K KK KKK+ K+
Sbjct: 207 EKDKYSYKKKLKSKKLKKKQAKR 229
>gnl|CDD|216018 pfam00606, Glycoprotein_B, Herpesvirus Glycoprotein B. This family
of proteins contains a transmembrane region.
Length = 711
Score = 28.3 bits (64), Expect = 2.8
Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 25/72 (34%)
Query: 56 DLLSGLASFF---------VVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEP-----IFIF 101
+ GL FF V V V G + ++G V+ N P I +
Sbjct: 620 AFVRGLDDFFQGLGAVGKAVGNVVSGVAGAVGSIVSGVVSFLKN------PFGGLLIILL 673
Query: 102 V-----MAYLAY 108
V +LAY
Sbjct: 674 VLAGLVAVFLAY 685
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
Length = 567
Score = 28.3 bits (63), Expect = 2.8
Identities = 9/34 (26%), Positives = 24/34 (70%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ + + ERE +++K++ K K ++++K K++ K+
Sbjct: 7 RAREKLEREQRERKQRAKLKLERERKAKEEAAKQ 40
Score = 27.5 bits (61), Expect = 5.4
Identities = 9/34 (26%), Positives = 24/34 (70%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
M + R+ RE +++++++K++ K K ++++K K
Sbjct: 1 MDFELRRAREKLEREQRERKQRAKLKLERERKAK 34
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 28.1 bits (63), Expect = 2.8
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 12 KKKKKKKKKKKKKKKKKKK 30
K+K++ KK+KKKK KK K
Sbjct: 356 KRKREGDKKQKKKKSKKLK 374
Score = 28.1 bits (63), Expect = 2.8
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 13 KKKKKKKKKKKKKKKKKKK 31
K+K++ KK+KKKK KK K
Sbjct: 356 KRKREGDKKQKKKKSKKLK 374
Score = 28.1 bits (63), Expect = 2.8
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 14 KKKKKKKKKKKKKKKKKKK 32
K+K++ KK+KKKK KK K
Sbjct: 356 KRKREGDKKQKKKKSKKLK 374
Score = 28.1 bits (63), Expect = 2.8
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 15 KKKKKKKKKKKKKKKKKKK 33
K+K++ KK+KKKK KK K
Sbjct: 356 KRKREGDKKQKKKKSKKLK 374
Score = 28.1 bits (63), Expect = 2.8
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 16 KKKKKKKKKKKKKKKKKKK 34
K+K++ KK+KKKK KK K
Sbjct: 356 KRKREGDKKQKKKKSKKLK 374
Score = 27.7 bits (62), Expect = 3.8
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 3 LKRRKERENKKKKKKKKKKK 22
KR++E + K+KKKK KK K
Sbjct: 355 PKRKREGDKKQKKKKSKKLK 374
Score = 27.7 bits (62), Expect = 4.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 10 ENKKKKKKKKKKKKKKKKKK 29
+K++ KK+KKKK KK K
Sbjct: 355 PKRKREGDKKQKKKKSKKLK 374
Score = 27.3 bits (61), Expect = 6.3
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 17 KKKKKKKKKKKKKKKKKKR 35
K+K++ KK+KKKK KK +
Sbjct: 356 KRKREGDKKQKKKKSKKLK 374
>gnl|CDD|236502 PRK09410, ulaA, PTS system ascorbate-specific transporter subunit
IIC; Reviewed.
Length = 452
Score = 28.3 bits (64), Expect = 2.8
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 57 LLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEV 92
++GL+ + ++ GG ++G+ W ++T +V
Sbjct: 139 SVAGLSGWGLIIFGGLLLGLYWAISPAITQKYTRKV 174
>gnl|CDD|227474 COG5145, RAD14, DNA excision repair protein [DNA replication,
recombination, and repair].
Length = 292
Score = 28.0 bits (62), Expect = 2.9
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLY 38
L R K+R K K +K+KK +KK K+ ++K + Y
Sbjct: 214 LDREKQRREKMKDDRKEKKLEKKIKELRRKTRTSNY 249
>gnl|CDD|226165 COG3639, COG3639, ABC-type phosphate/phosphonate transport system,
permease component [Inorganic ion transport and
metabolism].
Length = 283
Score = 28.0 bits (63), Expect = 3.0
Identities = 23/100 (23%), Positives = 36/100 (36%), Gaps = 26/100 (26%)
Query: 56 DLLSGLASFFVVAVGGTVIGVIWGFLTGF---------------VTRFTNEVRVIEPIFI 100
D+L+ L +A GT++ I F V R + +R I +
Sbjct: 86 DILTALLQTLAIAFAGTLLAAILAIPLAFLAARNLSPKRWISFPVRRLLDFIRTIPELV- 144
Query: 101 FVMAYLAYLTAEIFHM---SGILAITFCGITM--KNYVEA 135
A L F + +G+LA+ I + K Y EA
Sbjct: 145 -----WALLFVAAFGLGPFAGVLALGIYTIGILGKLYAEA 179
>gnl|CDD|234298 TIGR03659, IsdE, heme ABC transporter, heme-binding protein isdE.
This family of ABC substrate-binding proteins is
observed primarily in close proximity with proteins
localized to the cell wall and bearing the NEAT (NEAr
Transporter, pfam05031) heme-binding domain. IsdE has
been shown to bind heme and is involved in the process
of scavenging heme for the purpose of obtaining iron.
Length = 289
Score = 28.0 bits (63), Expect = 3.1
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
R+E+ K K+ +K+ + KKK K KKK +VL
Sbjct: 140 REEQAEKLVKEINEKEAEVKKKVKGKKKPKVL 171
>gnl|CDD|214659 smart00433, TOP2c, TopoisomeraseII. Eukaryotic DNA topoisomerase
II, GyrB, ParE.
Length = 594
Score = 28.3 bits (64), Expect = 3.3
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 9/45 (20%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKK---------KKKKKKRVLY 38
L K R KK ++ +KKK KK L+
Sbjct: 341 LLAAKARAAAKKARELTRKKKLSSISLPGKLADASSAGPKKCELF 385
>gnl|CDD|221673 pfam12626, PolyA_pol_arg_C, Polymerase A arginine-rich C-terminus.
The C-terminus of polymerase A in E coli is
arginine-rich and is necessary for full functioning of
the enzyme.
Length = 123
Score = 27.2 bits (61), Expect = 3.4
Identities = 4/28 (14%), Positives = 18/28 (64%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKK 34
++R + + ++ K+++++ +++KK
Sbjct: 96 EQRRAMIEALQGREGGKRRRRRPRRRKK 123
>gnl|CDD|130787 TIGR01726, HEQRo_perm_3TM, amine acid ABC transporter, permease
protein, 3-TM region, His/Glu/Gln/Arg/opine family.
This model represents one of several classes of multiple
membrane spanning regions found immediately N-terminal
to the domain described by pfam00528,
binding-protein-dependent transport systems inner
membrane component. The region covered by This model
generally is predicted to contain three transmembrane
helices. Substrate specificities attributed to members
of this family include histidine, arginine, glutamine,
glutamate, and (in Agrobacterium) the opines octopine
and nopaline [Transport and binding proteins, Amino
acids, peptides and amines].
Length = 99
Score = 26.7 bits (60), Expect = 3.5
Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 17/86 (19%)
Query: 57 LLSGLASFFVVAVGGTVIGVIWGFLTG------------FVTRFTNEVR----VIEPIFI 100
LL GL +++V ++G++ G L T + R +++ FI
Sbjct: 5 LLKGLLLTLLLSVLSILLGLVLGLLLALLRLSGNRPLRWIATVYVELFRGTPLLVQLFFI 64
Query: 101 FVMAYLAYLTAEIFHMSGILAITFCG 126
+ L + + ++A+T
Sbjct: 65 YFGLPLIGIRLSPL-TAAVIALTLFY 89
>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like
protein; Provisional.
Length = 438
Score = 27.8 bits (62), Expect = 3.6
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 7/36 (19%)
Query: 11 NKKKKKKKKKKKKKKKK-------KKKKKKKRVLYH 39
N +K K KKK+KKKK+ K+KKK+K
Sbjct: 9 NNQKDKNKKKEKKKKESPPPPHEIKRKKKRKGPDAA 44
>gnl|CDD|236278 PRK08506, PRK08506, replicative DNA helicase; Provisional.
Length = 472
Score = 28.1 bits (63), Expect = 3.6
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKK 33
KERE K+K+KK KK+ K++++ + K
Sbjct: 391 KEREEKEKEKKAKKEGKEERRIHFQNK 417
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 28.1 bits (63), Expect = 3.7
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAY 44
K + +K E +++ ++ K KKKK+KKK+ + F +
Sbjct: 405 KAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEKFRWFVSS 447
>gnl|CDD|216919 pfam02181, FH2, Formin Homology 2 Domain.
Length = 372
Score = 28.0 bits (63), Expect = 3.7
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRVL 37
K KKKK KK +KK KKKKK+ VL
Sbjct: 53 KAKKKKSKKSEKKSSSKKKKKEISVL 78
>gnl|CDD|240380 PTZ00362, PTZ00362, hypothetical protein; Provisional.
Length = 479
Score = 27.8 bits (62), Expect = 3.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRVL 37
KKKKKKKKK K+ + KK +
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIF 34
Score = 27.0 bits (60), Expect = 7.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKRVLYH 39
KKKKKKKKK K+ + K+ ++
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFM 35
>gnl|CDD|222425 pfam13865, FoP_duplication, C-terminal duplication domain of
Friend of PRMT1. Fop, or Friend of Prmt1, proteins are
conserved from fungi and plants to vertebrates. There
is little that is actually conserved except for this
C-terminal LDXXLDAYM region where X is any amino acid).
The Fop proteins themselves are nuclear proteins
localised to regions with low levels of DAPI, with a
punctate/speckle-like distribution. Fop is a
chromatin-associated protein and it colocalises with
facultative heterochromatin. It is is critical for
oestrogen-dependent gene activation.
Length = 76
Score = 26.3 bits (58), Expect = 3.7
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ + R R +++ + +K K K K K ++
Sbjct: 12 FRPRGRGARRGRRRGRGGRKGKGGAAKPKPKTRE 45
>gnl|CDD|217509 pfam03353, Lin-8, Ras-mediated vulval-induction antagonist.
LIN-8 is a nuclear protein, present at the sites of
transcriptional repressor complexes, which interacts
with LIN-35 Rb.Lin35 Rb is a product of the class B
synMuv gene lin-35 which silences genes required for
vulval specification through chromatin modification and
remodelling. The biological role of the interaction has
not yet been determined however predictions have been
made. The interaction shows that class A synMuv genes
control vulval induction through the transcriptional
regulation of gene expression. LIN-8 normally functions
as part of a protein complex however when the complex
is absent, other family members can partially replace
LIN-8 activity.
Length = 316
Score = 27.7 bits (62), Expect = 3.8
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTEM 47
K+ + +K K K K K+V+ + E EM
Sbjct: 4 KEYLELEKTKFGKYATKDVTLKKVVLSLLEKRPEM 38
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 28.0 bits (62), Expect = 3.8
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
K +++ E ++K +KKK K K K
Sbjct: 216 KAEKKAEAAAEEKAAAEKKKAAAKAKADKAAA 247
Score = 27.6 bits (61), Expect = 4.2
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K E K +KKK K K K K
Sbjct: 220 KAEAAAEEKAAAEKKKAAAKAKADKAAAAAK 250
>gnl|CDD|177283 PHA00451, PHA00451, protein kinase.
Length = 362
Score = 27.8 bits (62), Expect = 3.8
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 4 KRRKERENKK----KKKKKKKKKKKKKKKKKKKKKRVLYHM 40
K RK + + +K K++K+ +K + + + L M
Sbjct: 250 KNRKAKRDPNGTFQVARKAAMKRRKRNRKLRARNAKELAAM 290
>gnl|CDD|216470 pfam01385, OrfB_IS605, Probable transposase. This family includes
IS891, IS1136 and IS1341. DUF1225, pfam06774, has now
been merged into this family.
Length = 226
Score = 27.6 bits (62), Expect = 3.8
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
LK + NK+ + + K K ++K +K R+
Sbjct: 153 LKSINQYLNKEIARLQSKLKGSNRRKTSRKLARL 186
>gnl|CDD|222812 PHA00727, PHA00727, hypothetical protein.
Length = 278
Score = 27.5 bits (61), Expect = 4.0
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K+ ++E E KK++ ++ K + KKKKK KK+K
Sbjct: 45 KVYEKREFELKKQQFEQLKAELSKKKKKFKKEK 77
>gnl|CDD|214818 smart00784, SPT2, SPT2 chromatin protein. This entry includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 106
Score = 26.6 bits (59), Expect = 4.0
Identities = 7/20 (35%), Positives = 16/20 (80%)
Query: 5 RRKERENKKKKKKKKKKKKK 24
R +ER K+++++K+ +K+K
Sbjct: 87 REEERLEKEEEREKRARKRK 106
>gnl|CDD|217053 pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family. The pre-protein
translocase of the mitochondrial outer membrane (Tom)
allows the import of pre-proteins from the cytoplasm.
Tom forms a complex with a number of proteins, including
Tim17. Tim17 and Tim23 are thought to form the
translocation channel of the inner membrane. This family
includes Tim17, Tim22 and Tim23. This family also
includes Pmp24 a peroxisomal protein. The involvement of
this domain in the targeting of PMP24 remains to be
proved. PMP24 was known as Pmp27 in.
Length = 128
Score = 26.8 bits (60), Expect = 4.1
Identities = 9/67 (13%), Positives = 16/67 (23%), Gaps = 4/67 (5%)
Query: 63 SFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIF-VMAYLAYLTAEIFHMSGILA 121
+ G V G +G G V + + + F +
Sbjct: 9 DTGGGFLMGAVYGGFFGAPHGLVNALRSGPLKLRLNGVLNATGRRGPSHGNNF---AVFG 65
Query: 122 ITFCGIT 128
+ GI
Sbjct: 66 GLYSGIE 72
>gnl|CDD|240709 cd12263, RRM_ABT1_like, RNA recognition motif found in activator
of basal transcription 1 (ABT1) and similar proteins.
This subfamily corresponds to the RRM of novel nuclear
proteins termed ABT1 and its homologous counterpart,
pre-rRNA-processing protein ESF2 (eighteen S factor 2),
from yeast. ABT1 associates with the TATA-binding
protein (TBP) and enhances basal transcription activity
of class II promoters. Meanwhile, ABT1 could be a
transcription cofactor that can bind to DNA in a
sequence-independent manner. The yeast ABT1 homolog,
ESF2, is a component of 90S preribosomes and 5'
ETS-based RNPs. It is previously identified as a
putative partner of the TATA-element binding protein.
However, it is primarily localized to the nucleolus and
physically associates with pre-rRNA processing factors.
ESF2 may play a role in ribosome biogenesis. It is
required for normal pre-rRNA processing, as well as for
SSU processome assembly and function. Both ABT1 and
ESF2 contain an RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain). .
Length = 98
Score = 26.4 bits (59), Expect = 4.3
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 9/37 (24%)
Query: 9 RENKKKKKKKKKKKKKKKK---------KKKKKKKRV 36
E+ K+K++KKK KKK + KK KRV
Sbjct: 34 PEDPAKRKRRKKKGGNKKKKFTEGWVEFEDKKVAKRV 70
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 27.6 bits (62), Expect = 4.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKK 34
E+E + +KK +KK KK KK K ++
Sbjct: 82 EAEKEIWEAEKKGLEKKAKKAIKKGKDEE 110
Score = 27.2 bits (61), Expect = 6.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ KE E +K+ + +KK +KK KK KK
Sbjct: 76 EELKEYEAEKEIWEAEKKGLEKKAKKAIKKG 106
>gnl|CDD|217348 pfam03064, U79_P34, HSV U79 / HCMV P34. This family represents
herpes virus protein U79 and cytomegalovirus early
phosphoprotein P34 (UL112).
Length = 238
Score = 27.5 bits (61), Expect = 4.3
Identities = 8/30 (26%), Positives = 21/30 (70%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
++R K+K+K++ + +K K+ ++KK++
Sbjct: 159 HRKRSGKQKEKRRVEDSQKHKEDRRKKQEE 188
Score = 26.8 bits (59), Expect = 8.1
Identities = 9/31 (29%), Positives = 23/31 (74%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
R++ + K+K++ + +K K+ ++KK+++KR
Sbjct: 160 RKRSGKQKEKRRVEDSQKHKEDRRKKQEEKR 190
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like :
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB proteins similar to the
monomeric yeast and human topo I. Topo I enzymes are
divided into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. This family may represent more than
one structural domain.
Length = 215
Score = 27.3 bits (61), Expect = 4.3
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKK 33
+ ++E KK K++KK K +K+K +++
Sbjct: 95 KAQKEEKKAMSKEEKKAIKAEKEKLEEE 122
>gnl|CDD|204792 pfam11947, DUF3464, Protein of unknown function (DUF3464). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 137 to
196 amino acids in length.
Length = 149
Score = 26.9 bits (60), Expect = 4.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
KR +++ K +K K K K+KK K K+
Sbjct: 13 KRSRKKGVKALRKAAVAKSKDKQKKPKSKRAA 44
Score = 26.9 bits (60), Expect = 5.3
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 4 KRRKERENKKKKKKKKKK------KKKKKKKKKKKKKR 35
++R E K+ +KK K K K K+KK K KR
Sbjct: 5 RKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKR 42
Score = 26.1 bits (58), Expect = 7.9
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
+ RK+ +K K K K+KK K K+
Sbjct: 14 RSRKKGVKALRKAAVAKSKDKQKKPKSKRAASES 47
>gnl|CDD|221712 pfam12687, DUF3801, Protein of unknown function (DUF3801). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 158 and 187 amino
acids in length. This family includes the PcfB protein.
Length = 137
Score = 26.8 bits (60), Expect = 4.4
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKK 32
RK+ + K+++ KKK++K K K KKK
Sbjct: 111 RKKLKKFKEEQAAKKKERKDKVKNKKK 137
Score = 26.4 bits (59), Expect = 7.0
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 9 RENKKKKKKKKKKKKKKKKKKKKKKKR 35
R+ KK K+++ KKK++K K K KK+
Sbjct: 111 RKKLKKFKEEQAAKKKERKDKVKNKKK 137
>gnl|CDD|227935 COG5648, NHP6B, Chromatin-associated proteins containing the HMG
domain [Chromatin structure and dynamics].
Length = 211
Score = 27.5 bits (61), Expect = 4.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKK 29
K+ + E + KKKK K KK K++
Sbjct: 175 TKIISKAWSELDESKKKKYIDKYKKLKEE 203
Score = 26.7 bits (59), Expect = 6.6
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K E + KKKK K KK K++ +
Sbjct: 180 KAWSELDESKKKKYIDKYKKLKEEYDSFYPE 210
>gnl|CDD|217165 pfam02653, BPD_transp_2, Branched-chain amino acid transport system
/ permease component. This is a large family mainly
comprising high-affinity branched-chain amino acid
transporter proteins such as E. coli LivH and LivM, both
of which are form the LIV-I transport system. Also found
with in this family are proteins from the galactose
transport system permease and a ribose transport system.
Length = 267
Score = 27.6 bits (62), Expect = 4.5
Identities = 10/53 (18%), Positives = 21/53 (39%)
Query: 57 LLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYL 109
L G ++ ++ + G ++G G L G + VI + + + L
Sbjct: 47 LALGGSNLWLALLAGLLVGAAVGLLNGLLVVRLKVPEVIVTLLLNFILRGLTL 99
>gnl|CDD|213815 TIGR03469, HpnB, hopene-associated glycosyltransferase HpnB. This
family of genes include a glycosyl transferase, group 2
domain (pfam00535) which are responsible, generally for
the transfer of nucleotide-diphosphate sugars to
substrates such as polysaccharides and lipids. The genes
of this family are often found in the same genetic locus
with squalene-hopene cyclase genes, and are never
associated with genes for the metabolism of phytoene.
Indeed, the members of this family appear to never be
found in a genome lacking squalene-hopene cyclase (SHC),
although not all genomes encoding SHC have this glycosyl
transferase. In the organism Zymomonas mobilis the
linkage of this gene to hopanoid biosynthesis has been
noted and the gene named HpnB. Hopanoids are known to
feature polar glycosyl head groups in many organisms.
Length = 384
Score = 27.7 bits (62), Expect = 4.5
Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 37 LYHMF--EAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWG 79
++ M AYT++ ++ +L + G+A ++ + G G
Sbjct: 271 IWRMIARTAYTQLRYSPLLLAGTVIGMALVYLAPPVLALFGGGRG 315
>gnl|CDD|219882 pfam08524, rRNA_processing, rRNA processing. This is a family of
proteins that are involved in rRNA processing. In a
localisation study they were found to localise to the
nucleus and nucleolus. The family also includes other
metazoa members from plants to mammals where the protein
has been named BR22 and is associated with TTF-1,
thyroid transcription factor 1. In the lungs, the family
binds TTF-1 to form a complex which influences the
expression of the key lung surfactant protein-B (SP-B)
and -C (SP-C), the small hydrophobic surfactant proteins
that maintain surface tension in alveoli.
Length = 150
Score = 27.2 bits (60), Expect = 4.6
Identities = 10/34 (29%), Positives = 25/34 (73%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
++ ++++RE ++K+ K++K+ +K + KKK+K
Sbjct: 79 EIAKQRKREQREKELAKRQKELEKIELSKKKQKE 112
Score = 26.8 bits (59), Expect = 4.9
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
KR+KE E + KKK+K++++++KK KK K
Sbjct: 95 KRQKELEKIELSKKKQKERERRRKKLTKKTKS 126
Score = 26.8 bits (59), Expect = 6.0
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K+RK + +K+ K++K+ +K + KKK+K+R
Sbjct: 82 KQRKREQREKELAKRQKELEKIELSKKKQKER 113
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 27.8 bits (61), Expect = 4.7
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
+LK + R K + + KK+ +K KKKK K++
Sbjct: 310 ELKSLEHRAAKAAEAEMKKRAEKPKKKKSKRR 341
Score = 27.4 bits (60), Expect = 6.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K E++ K + + KK+ +K KKKK KR
Sbjct: 312 KSLEHRAAKAAEAEMKKRAEKPKKKKSKR 340
>gnl|CDD|233143 TIGR00834, ae, anion exchange protein. The Anion Exchanger (AE)
Family (TC 2.A.31)Characterized protein members of the
AE family are found only in animals.They preferentially
catalyze anion exchange (antiport) reactions, typically
acting as HCO3-:Cl- antiporters, but also transporting a
range of other inorganic and organic anions.
Additionally, renal Na+:HCO3- cotransporters have been
found to be members of the AE family. They catalyze the
reabsorption of HCO3- in the renal proximal tubule
[Transport and binding proteins, Anions].
Length = 900
Score = 27.8 bits (62), Expect = 4.7
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
Query: 53 LYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEV--RVIEPIFIF 101
+++ L L +VA G+ FL +++RFT E+ +I IFI+
Sbjct: 457 VWIGLWLVLLVLLLVATEGS-------FLVRYISRFTQEIFSFLISLIFIY 500
>gnl|CDD|219761 pfam08243, SPT2, SPT2 chromatin protein. This family includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 116
Score = 26.8 bits (59), Expect = 4.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 3 LKRRKERENKKKKKKKK 19
L R +E E +KKKKK K
Sbjct: 100 LAREEEEEKRKKKKKNK 116
>gnl|CDD|153340 cd07656, F-BAR_srGAP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase
Activating Proteins. F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. Slit-Robo GTPase Activating Proteins
(srGAPs) are Rho GAPs that interact with Robo1, the
transmembrane receptor of Slit proteins. Slit proteins
are secreted proteins that control axon guidance and the
migration of neurons and leukocytes. Vertebrates contain
three isoforms of srGAPs, all of which are expressed
during embryonic and early development in the nervous
system but with different localization and timing.
srGAPs contain an N-terminal F-BAR domain, a Rho GAP
domain, and a C-terminal SH3 domain. F-BAR domains form
banana-shaped dimers with a positively-charged concave
surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 241
Score = 27.3 bits (61), Expect = 4.8
Identities = 7/32 (21%), Positives = 21/32 (65%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
+ +++++ KK ++ + KK +K+ +K++ K
Sbjct: 160 QEEKQEQSPEKKLERSRSSKKIEKEVEKRQAK 191
>gnl|CDD|217479 pfam03297, Ribosomal_S25, S25 ribosomal protein.
Length = 105
Score = 26.6 bits (59), Expect = 4.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKK 34
KK++KK K K KKKK
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKK 26
Score = 26.2 bits (58), Expect = 5.8
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
M K+++++ K K KKKK K K K ++
Sbjct: 1 MPPKKQQKKAAKAAAASAGGKAKKKKWSKGKVKDKL 36
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 27.9 bits (63), Expect = 4.9
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K + +KE E++K K+ + KK + +KKK+ K
Sbjct: 174 KFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSK 206
>gnl|CDD|211392 cd11380, Ribosomal_S8e_like, Eukaryotic/archaeal ribosomal
protein S8e and similar proteins. This family contains
the eukaryotic/archaeal ribosomal protein S8, a
component of the small ribosomal subunits, as well as
the NSA2 gene product.
Length = 138
Score = 26.7 bits (60), Expect = 5.2
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 9 RENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ K K+K K K +KK+K + R
Sbjct: 1 PQGKHKRKATGGKFKVVRKKRKYELGR 27
>gnl|CDD|223747 COG0675, COG0675, Transposase and inactivated derivatives [DNA
replication, recombination, and repair].
Length = 364
Score = 27.3 bits (60), Expect = 5.2
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
KL +R ++ K+ +KK + K++KK K K + R
Sbjct: 203 RKLLKRLKKAQKRLSRKKSRSKRRKKAKLKLARLR 237
>gnl|CDD|222466 pfam13945, NST1, Splicing factor, salt tolerance regulator. NST1
is a family of proteins that seem to be involved,
directly or indirectly, in the salt sensitivity of some
cellular functions in yeast. These proteins also
interact with the splicing factor Msl1p.
Length = 189
Score = 27.2 bits (60), Expect = 5.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 11 NKKKKKKKKKKKKKK 25
+K KKKKKK+ K
Sbjct: 31 SKSKKKKKKRSKATS 45
Score = 26.4 bits (58), Expect = 8.4
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 23 KKKKKKKKKKKKR 35
K KKKKKK+ K
Sbjct: 32 KSKKKKKKRSKAT 44
Score = 26.4 bits (58), Expect = 8.7
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 22 KKKKKKKKKKKKKR 35
K KKKKKK+ K
Sbjct: 32 KSKKKKKKRSKATS 45
Score = 26.4 bits (58), Expect = 9.0
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 11 NKKKKKKKKKKKKKKKK 27
+ K KKKKKK+ K
Sbjct: 29 SSSKSKKKKKKRSKATS 45
Score = 26.4 bits (58), Expect = 9.4
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKK 28
+L ++ K KKKKKK+ K
Sbjct: 18 DELNTVIHNDSSSSKSKKKKKKRSKATS 45
Score = 26.4 bits (58), Expect = 9.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 16 KKKKKKKKKKKKKK 29
K KKKKKK+ K
Sbjct: 32 KSKKKKKKRSKATS 45
Score = 26.4 bits (58), Expect = 9.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 17 KKKKKKKKKKKKKK 30
K KKKKKK+ K
Sbjct: 32 KSKKKKKKRSKATS 45
Score = 26.4 bits (58), Expect = 9.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 18 KKKKKKKKKKKKKK 31
K KKKKKK+ K
Sbjct: 32 KSKKKKKKRSKATS 45
Score = 26.4 bits (58), Expect = 9.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 19 KKKKKKKKKKKKKK 32
K KKKKKK+ K
Sbjct: 32 KSKKKKKKRSKATS 45
Score = 26.4 bits (58), Expect = 9.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 20 KKKKKKKKKKKKKK 33
K KKKKKK+ K
Sbjct: 32 KSKKKKKKRSKATS 45
Score = 26.4 bits (58), Expect = 9.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 21 KKKKKKKKKKKKKK 34
K KKKKKK+ K
Sbjct: 32 KSKKKKKKRSKATS 45
>gnl|CDD|218337 pfam04939, RRS1, Ribosome biogenesis regulatory protein (RRS1).
This family consists of several eukaryotic ribosome
biogenesis regulatory (RRS1) proteins. RRS1 is a nuclear
protein that is essential for the maturation of 25 S
rRNA and the 60 S ribosomal subunit assembly in
Saccharomyces cerevisiae.
Length = 164
Score = 26.9 bits (60), Expect = 5.2
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKK 29
++ +KK++ K +K++ K KK
Sbjct: 141 FAKKRREKKERVAKNEKRELKNKK 164
Score = 26.9 bits (60), Expect = 5.2
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKR 35
KK+++KK++ K +K++ K K+
Sbjct: 142 AKKRREKKERVAKNEKRELKNKK 164
Score = 26.9 bits (60), Expect = 5.4
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 9 RENKKKKKKKKKKKKKKKKKKKKK 32
K+++KK++ K +K++ K KK
Sbjct: 141 FAKKRREKKERVAKNEKRELKNKK 164
Score = 26.9 bits (60), Expect = 5.5
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKK 34
KK+++KK++ K +K++ K KK
Sbjct: 142 AKKRREKKERVAKNEKRELKNKK 164
Score = 26.9 bits (60), Expect = 5.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKK 28
K+R KK++ K +K++ K KK
Sbjct: 141 FAKKRREKKERVAKNEKRELKNKK 164
Score = 26.5 bits (59), Expect = 8.3
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKK 30
++ ++KK++ K +K++ K KK
Sbjct: 142 AKKRREKKERVAKNEKRELKNKK 164
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812). This
family consists of several eukaryotic proteins of
unknown function.
Length = 536
Score = 27.4 bits (61), Expect = 5.2
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKK 29
K+K+ E +++ ++ +++ K KK+
Sbjct: 299 KIKQVNEELTTVRQENEELEEEYKIKKR 326
>gnl|CDD|219181 pfam06800, Sugar_transport, Sugar transport protein. This is a
family of bacterial sugar transporters approximately 300
residues long. Members include glucose uptake proteins,
ribose transport proteins, and several putative and
hypothetical membrane proteins probably involved in
sugar transport across bacterial membranes.
Length = 268
Score = 27.2 bits (61), Expect = 5.3
Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 21/126 (16%)
Query: 16 KKKKKKKKKKKKKKKKKKKRVLYHMFEAYTEMGHNNVLYVDL-----LSGLASFFVVAVG 70
+ KK+ K + K KK +L + +G+ V YV L + GL++ A+G
Sbjct: 121 LQDKKEAKVESSKNLKKGIILL-----LISTIGY--VGYVVLPQLFKVDGLSAILPQAIG 173
Query: 71 GTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYL---------TAEIFHMSGILA 121
+ +I+ V I P + + L L TA G++
Sbjct: 174 MVIGALIFSLKNFKVFFEKYTWLNIIPGLFWGIGNLFMLISAQKVGVATAFSLSQLGVVI 233
Query: 122 ITFCGI 127
T GI
Sbjct: 234 STLGGI 239
>gnl|CDD|214787 smart00721, BAR, BAR domain.
Length = 239
Score = 27.3 bits (61), Expect = 5.3
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 16/71 (22%)
Query: 4 KRRKERENK-----------KKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTEMGHNNV 52
K RK+ E K KK KK K+KKK +K K +++ R FE N
Sbjct: 138 KARKKLERKLLDYDSARHKLKKAKKSKEKKKDEKLAKAEEELRKAKQEFEES-----NAQ 192
Query: 53 LYVDLLSGLAS 63
L +L +AS
Sbjct: 193 LVEELPQLVAS 203
>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import
receptor (72 kDa mitochondrial outermembrane protein)
(mitochondrial import receptor for the ADP/ATP carrier)
(translocase of outermembrane tom70). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 615
Score = 27.6 bits (61), Expect = 5.6
Identities = 11/31 (35%), Positives = 23/31 (74%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
K +++RE+K K KK+++K+K+ +K+ + K
Sbjct: 57 RKGQQQRESKPKISKKERRKRKQAEKETEGK 87
>gnl|CDD|225816 COG3277, GAR1, RNA-binding protein involved in rRNA processing
[Translation, ribosomal structure and biogenesis].
Length = 98
Score = 26.2 bits (58), Expect = 5.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 11 NKKKKKKKKKKKKKKKKKKKKK 32
K +KK+K +KK++ KK K
Sbjct: 77 PDKLIRKKRKLPRKKRRPKKPK 98
Score = 25.8 bits (57), Expect = 7.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKK 34
K +KK+K +KK++ KK K
Sbjct: 76 PPDKLIRKKRKLPRKKRRPKKPK 98
Score = 25.8 bits (57), Expect = 8.4
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKR 35
K +KK+K +KK++ KK +
Sbjct: 76 PPDKLIRKKRKLPRKKRRPKKPK 98
>gnl|CDD|238029 cd00074, H2A, Histone 2A; H2A is a subunit of the nucleosome. The
nucleosome is an octamer containing two H2A, H2B, H3,
and H4 subunits. The H2A subunit performs essential
roles in maintaining structural integrity of the
nucleosome, chromatin condensation, and binding of
specific chromatin-associated proteins.
Length = 115
Score = 26.1 bits (58), Expect = 5.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 100 IFVMAYLAYLTAEIFHMSGILA 121
+++ A L YLTAE+ ++G A
Sbjct: 45 VYLAAVLEYLTAEVLELAGNAA 66
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 26.7 bits (59), Expect = 6.1
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 10 ENKKKKKKKKKKKKKKKKKKKKKKK 34
E K+ K KK K K KK KK
Sbjct: 108 EEKEGKVNAKKDKLSKAKKAAKKAA 132
Score = 26.7 bits (59), Expect = 6.3
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKK 31
+E+E K KK K K KK KK
Sbjct: 108 EEKEGKVNAKKDKLSKAKKAAKKAA 132
Score = 26.3 bits (58), Expect = 9.0
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
KL + K+ K + +KK + + + +KK
Sbjct: 120 KLSKAKKAAKKAALEAEKKVNEARAEAVAEKKA 152
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 27.0 bits (60), Expect = 6.1
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
++ + + ++ KKK++ + KKKK+ L
Sbjct: 77 EKELSASSLEAEQAKKKEEAEAKKKKEMEEL 107
Score = 27.0 bits (60), Expect = 6.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
E E KKK++ + KKKK+ ++ K +K++
Sbjct: 85 LEAEQAKKKEEAEAKKKKEMEELKAVQKKI 114
Score = 26.6 bits (59), Expect = 8.8
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Query: 26 KKKKKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVV 67
KK +KKKKK+ H+ E++ + Y DLL+ L + F+V
Sbjct: 1 KKNRKKKKKKHEEHIDESWL------IPYADLLTLLLALFIV 36
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 27.3 bits (60), Expect = 6.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K K+RK E +++KK K K+KK KK K
Sbjct: 529 KNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMK 561
Score = 26.6 bits (58), Expect = 9.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 10 ENKKKKKKKKKKKKKKKKKKKKKK 33
E K K K KK+K +++++KK
Sbjct: 520 EADKDVNKSKNKKRKVDEEEEEKK 543
>gnl|CDD|240309 PTZ00189, PTZ00189, 60S ribosomal protein L21; Provisional.
Length = 160
Score = 26.5 bits (59), Expect = 6.4
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKK 34
RK R + K+ K + KKK +
Sbjct: 97 RKSRCREDFLKRVAANDAIKAEAKKKGEL 125
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 27.3 bits (61), Expect = 6.4
Identities = 7/35 (20%), Positives = 19/35 (54%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
L++ +E + K + +KK + +++ + K+ L
Sbjct: 548 LEKLEELKKKLAELEKKLDELEEELAELLKELEEL 582
Score = 27.0 bits (60), Expect = 7.9
Identities = 10/31 (32%), Positives = 22/31 (70%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+R KE E K+++ ++ KKK K+ +K+ ++ +
Sbjct: 328 ERIKELEEKEERLEELKKKLKELEKRLEELE 358
Score = 27.0 bits (60), Expect = 8.6
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 3 LKRRKEREN--KKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTEM 47
LK+ E+ KKK + +KK + +++ + K + FE+ E+
Sbjct: 544 LKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEEL 590
>gnl|CDD|217935 pfam04158, Sof1, Sof1-like domain. Sof1 is essential for cell
growth and is a component of the nucleolar rRNA
processing machinery.
Length = 88
Score = 25.7 bits (57), Expect = 6.4
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKK 30
MK ++++ EN++K K K ++KK
Sbjct: 57 MKEAKKRKEENRRKHSKPGSVPPKPERKKH 86
>gnl|CDD|201249 pfam00472, RF-1, RF-1 domain. This domain is found in peptide
chain release factors such as RF-1 and RF-2, and a
number of smaller proteins of unknown function. This
domain contains the peptidyl-tRNA hydrolase activity.
The domain contains a highly conserved motif GGQ, where
the glutamine is thought to coordinate the water that
mediates the hydrolysis.
Length = 114
Score = 26.0 bits (58), Expect = 6.5
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 2 KLKRR-KERENKKKKKKKKKKKKKKKKKKKKKKKRVLY 38
+LK + E E +KK++K K + + ++ +K+K Y
Sbjct: 66 RLKAKLYEAELQKKREKTKPTRASQVRRGDRKEKIRTY 103
>gnl|CDD|240292 PTZ00148, PTZ00148, 40S ribosomal protein S8; Provisional.
Length = 205
Score = 26.9 bits (60), Expect = 6.5
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
K K +KE ENKK KKK + K + +KK K
Sbjct: 124 KKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
>gnl|CDD|225620 COG3078, COG3078, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 169
Score = 26.7 bits (59), Expect = 6.6
Identities = 9/34 (26%), Positives = 23/34 (67%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
K +R + + +KK ++K +++ + + +K++KKR
Sbjct: 6 KTRRPRSKADKKARRKTREELDAEARDRKRQKKR 39
>gnl|CDD|237276 PRK13024, PRK13024, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 755
Score = 27.1 bits (61), Expect = 6.6
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 12 KKKKKKKKKKKKKKKKKKKKK 32
+K++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 27.1 bits (61), Expect = 6.6
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 13 KKKKKKKKKKKKKKKKKKKKK 33
+K++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 27.1 bits (61), Expect = 6.6
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 14 KKKKKKKKKKKKKKKKKKKKK 34
+K++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 27.1 bits (61), Expect = 7.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 10 ENKKKKKKKKKKKKKKKKKKK 30
E ++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
>gnl|CDD|221473 pfam12230, PRP21_like_P, Pre-mRNA splicing factor PRP21 like
protein. This domain family is found in eukaryotes,
and is typically between 212 and 238 amino acids in
length. The family is found in association with
pfam01805. There are two completely conserved residues
(W and H) that may be functionally important. PRP21 is
required for assembly of the prespliceosome and it
interacts with U2 snRNP and/or pre-mRNA in the
prespliceosome. This family also contains proteins
similar to PRP21, such as the mammalian SF3a. SF3a also
interacts with U2 snRNP from the prespliceosome,
converting it to its active form.
Length = 230
Score = 27.0 bits (60), Expect = 6.7
Identities = 9/53 (16%), Positives = 25/53 (47%), Gaps = 12/53 (22%)
Query: 2 KLKRRKERENKKKKKK------------KKKKKKKKKKKKKKKKKRVLYHMFE 42
L + + K K K +KK+++KK+++++++R+ + +
Sbjct: 3 SLLENLKANSVKDKYYILERAYKRAEWEKHQKKEEQKKEEEEEEERIAFASID 55
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins. Myosins
V transport a variety of intracellular cargo
processively along actin filaments, such as membraneous
organelles and mRNA. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 691
Score = 27.3 bits (61), Expect = 6.8
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMF 41
E + K K K+ K+ K+ K + F
Sbjct: 533 AELASSSSSSAKSKPAAKRPPKRAKQHKPTVGSQF 567
>gnl|CDD|221643 pfam12572, DUF3752, Protein of unknown function (DUF3752). This
domain family is found in eukaryotes, and is typically
between 140 and 163 amino acids in length.
Length = 148
Score = 26.6 bits (59), Expect = 6.9
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 6/36 (16%)
Query: 4 KRRKERENKKKKKKKKKKKK------KKKKKKKKKK 33
KR KE K K+ +KK+ K +KK+KKKKK+
Sbjct: 69 KRDKEMARKVKEYNEKKRGKSLVEQHQKKQKKKKKE 104
Score = 26.2 bits (58), Expect = 8.9
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 7/39 (17%)
Query: 4 KRRKERENKKKKKK-------KKKKKKKKKKKKKKKKKR 35
R+ + N+KK+ K KK+KKKKK+++ +R
Sbjct: 75 ARKVKEYNEKKRGKSLVEQHQKKQKKKKKEEENDDPSRR 113
>gnl|CDD|119324 cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of
Escherichia coli LivH and related proteins. LivH is one
of two TMs of the E. coli LIV-1/LS transporter, a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of
branched-chain amino acids (AAs). These types of
transporters generally bind type 1 PBPs. PBP-dependent
ABC transporters consist of a PBP, two TMs, and two
cytoplasmic ABCs, and are mainly involved in importing
solutes from the environment. The solute is captured by
the PBP, which delivers it to a gated translocation
pathway formed by the two TMs. The two ABCs bind and
hydrolyze ATP and drive the transport reaction. E. coli
LivH forms a heterodimer with another TM, LivM, to
generate the transmembrane pore. LivM is not included in
this subgroup. The LIV-1/LS transporter is comprised of
two TMs (LivM and LivH), two ABCs (LivG and LivF), and
one of two alternative PBPs, LivJ (LIV-BP) or LivK
(LS-BP). In addition to transporting branched-chain AAs
including leucine, isoleucine and valine, the E. coli
LIV-1/LS transporter is involved in the uptake of the
aromatic AA, phenylalanine.
Length = 272
Score = 27.0 bits (61), Expect = 7.0
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 40 MFEAYTEMGHNNVLY---VDLLSGLASFFVVAVGGTVIGVIWGFLTGFV 85
+ MG +L +L GL S VGG ++G+ ++
Sbjct: 199 ITGVSPTMGLLLLLKAFAAVVLGGLGSIPGAVVGGLLLGLAESLAAAYL 247
>gnl|CDD|219215 pfam06881, Elongin_A, RNA polymerase II transcription factor SIII
(Elongin) subunit A. This family represents a conserved
region within RNA polymerase II transcription factor
SIII (Elongin) subunit A. In mammals, the Elongin
complex activates elongation by RNA polymerase II by
suppressing transient pausing of the polymerase at many
sites within transcription units. Elongin is a
heterotrimer composed of A, B, and C subunits of 110,
18, and 15 kilodaltons, respectively. Subunit A has been
shown to function as the transcriptionally active
component of Elongin.
Length = 108
Score = 26.1 bits (58), Expect = 7.1
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLY 38
+ L+ +ERE K K+ ++ K K+ K K R
Sbjct: 67 LYLRLVEEREQKLKESGRRLTKNIKRANANKPKGRQAV 104
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 27.3 bits (60), Expect = 7.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
RRK +++K +KK +K++K KK
Sbjct: 117 TRRKAAAASSDVEEEKTEKKVRKRRKVKKMD 147
>gnl|CDD|192718 pfam11176, DUF2962, Protein of unknown function (DUF2962). This
eukaryotic family of proteins has no known function.
Length = 155
Score = 26.4 bits (59), Expect = 7.1
Identities = 6/30 (20%), Positives = 16/30 (53%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
++ R + K +KKK ++ +K+ + +
Sbjct: 21 KQLNRATLRDDKLEKKKAERAEKRSLELDR 50
Score = 26.4 bits (59), Expect = 7.3
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKK 30
+L R R++K +KKK ++ +K+ + +
Sbjct: 21 KQLNRATLRDDKLEKKKAERAEKRSLELDR 50
Score = 26.4 bits (59), Expect = 7.5
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKRVLY 38
+ K +KKK ++ +K+ + R+ +
Sbjct: 28 LRDDKLEKKKAERAEKRSLELDRLFF 53
>gnl|CDD|215525 PLN02972, PLN02972, Histidyl-tRNA synthetase.
Length = 763
Score = 27.2 bits (60), Expect = 7.1
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
K + E EN+ K KK KK KKKK K VL
Sbjct: 235 KPQAEAENEAGKSDKKDKKSKKKKVLGKGTSAVL 268
>gnl|CDD|218601 pfam05477, SURF2, Surfeit locus protein 2 (SURF2). Surfeit locus
protein 2 is part of a group of at least six sequence
unrelated genes (Surf-1 to Surf-6). The six Surfeit
genes have been classified as housekeeping genes, being
expressed in all tissue types tested and not containing
a TATA box in their promoter region. The exact function
of SURF2 is unknown.
Length = 244
Score = 26.8 bits (59), Expect = 7.4
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+R ++++ KK KK KKK + K
Sbjct: 215 KRSKKQSGSLTKKFKKNHKKKGPFRFSSVK 244
>gnl|CDD|225272 COG2409, COG2409, Predicted drug exporters of the RND superfamily
[General function prediction only].
Length = 937
Score = 27.0 bits (60), Expect = 7.4
Identities = 13/64 (20%), Positives = 20/64 (31%)
Query: 57 LLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFHM 116
LL+ L A G V+ + G L + + P + EIF +
Sbjct: 589 LLTALQLTVQAATGALVVSALDGTLPQVLALLPGPLISTMPALRIAALFGLSTDYEIFLL 648
Query: 117 SGIL 120
S
Sbjct: 649 SRQR 652
>gnl|CDD|233042 TIGR00598, rad14, DNA repair protein. All proteins in this family
for which functions are known are used for the
recognition of DNA damage as part of nucleotide excision
repair. This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 172
Score = 26.7 bits (59), Expect = 7.4
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLY 38
L KER + K++ K+KK +KK K+ ++ + Y
Sbjct: 96 LDEEKERREESKEEMKEKKFEKKLKELRRAVRSSEY 131
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 26.9 bits (60), Expect = 7.5
Identities = 7/31 (22%), Positives = 21/31 (67%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ +KE + ++K ++ + + +KK+++ +K K
Sbjct: 99 ELKKELKKLEEKIEQLEAEIEKKEEELEKAK 129
>gnl|CDD|217301 pfam02956, TT_ORF1, TT viral orf 1. TT virus (TTV), isolated
initially from a Japanese patient with hepatitis of
unknown aetiology, has since been found to infect both
healthy and diseased individuals and numerous prevalence
studies have raised questions about its role in
unexplained hepatitis. ORF1 is a large 750 residue
protein. The N-terminal half of this protein corresponds
to the capsid protein.
Length = 525
Score = 26.8 bits (60), Expect = 7.6
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 11 NKKKKKKKKKKKKKKKKKKKKKK 33
K K K + K KK K K
Sbjct: 188 AKHKILIPSLKTRPKGKKYVKIK 210
Score = 26.8 bits (60), Expect = 7.7
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKRV 36
K K K + K KK K ++
Sbjct: 189 KHKILIPSLKTRPKGKKYVKIKI 211
>gnl|CDD|219784 pfam08302, tRNA_lig_CPD, Fungal tRNA ligase phosphodiesterase
domain. This domain is found in fungal tRNA ligases
and has cyclic phosphodiesterase activity. tRNA ligases
are enzymes required for the splicing of precursor tRNA
molecules containing introns.
Length = 259
Score = 26.6 bits (59), Expect = 7.8
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRVLY 38
K K K+K + +KKKK+ Y
Sbjct: 49 GYGSKNNKNKQKGETPSPEKKKKKPEY 75
>gnl|CDD|191868 pfam07839, CaM_binding, Plant calmodulin-binding domain. The
sequences featured in this family are found repeated in
a number of plant calmodulin-binding proteins, and are
thought to constitute the calmodulin-binding domains.
Binding of the proteins to calmodulin depends on the
presence of calcium ions. These proteins are thought to
be involved in various processes, such as plant defence
responses and stolonisation or tuberization.
Length = 115
Score = 25.8 bits (57), Expect = 7.8
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKK----KKKKKKKKRVL 37
+ +R K+ + K +K+K K KK K+ K ++V
Sbjct: 5 KEERRSKKEDPKPEKEKPKSWSNLKKVILLKRFVKSLEKVR 45
>gnl|CDD|204578 pfam10999, DUF2839, Protein of unknown function (DUF2839). This
bacterial family of unknown function appear to be
restricted to Cyanobacteria.
Length = 68
Score = 25.0 bits (55), Expect = 7.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
KRRKE+ ++KKK++ K + K+ V
Sbjct: 5 KRRKEQGLPPREKKKERILSWLPITKSQSKQFVK 38
>gnl|CDD|223625 COG0551, TopA, Zn-finger domain associated with topoisomerase type
I [DNA replication, recombination, and repair].
Length = 140
Score = 26.4 bits (58), Expect = 7.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ E K K+KK K +K +KK+KK+
Sbjct: 92 RFTEKPKPKEKKCPKCGSRKLVEKKEKKK 120
>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper.
Length = 54
Score = 24.9 bits (55), Expect = 7.9
Identities = 7/30 (23%), Positives = 22/30 (73%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKK 31
+ +RR+ E ++ ++KKK+++++ +++ K
Sbjct: 6 RDRRRRNNEAARRSREKKKQREEELEERVK 35
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 26.8 bits (60), Expect = 8.0
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
+ ++ KKK++ K + K+ KK
Sbjct: 532 QYLALKQPAVKKKEEAAAPKAETVKRSSKK 561
>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription
factors and mRNA splicing factors [Transcription / RNA
processing and modification / Cell division and
chromosome partitioning].
Length = 512
Score = 27.1 bits (60), Expect = 8.0
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTEM 47
+R+ K KK + KK K R Y++FE +
Sbjct: 255 DRDEDKFWPNIYKKLPYRDKKSIYKHLRRKYNIFEQRGKW 294
>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic
subunit.
Length = 1044
Score = 27.2 bits (60), Expect = 8.1
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 11 NKKKKKKKKKKKKKKK------KKKKKKKKRVLYHMFEAYTEMGHNNVL 53
+ K KK KK KK ++ KK+KKK M + Y V
Sbjct: 607 RRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQAVF 655
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 27.2 bits (60), Expect = 8.1
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 88 FTNEVRVIEPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKY 147
TN V IF V+ +LA + A + G+ IT NYV+ ++ S V+
Sbjct: 861 TTNRNLVFVLIFCLVI-FLAEVAASL---LGLWLITDNPSA-PNYVDQQHANASSPDVQK 915
Query: 148 AMKMLSSSSETIIFMFLGIS 167
+ + +S+ I ++++G +
Sbjct: 916 PVIITPTSAYYIFYIYVGTA 935
>gnl|CDD|119394 cd06261, TM_PBP2, Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette
(ABC) transporters which generally bind type 2 PBPs.
These types of transporters consist of a PBP, two TMs,
and two cytoplasmic ABC ATPase subunits, and are mainly
involved in importing solutes from the environment. The
solute is captured by the PBP which delivers it to a
gated translocation pathway formed by the two TMs. The
two ABCs bind and hydrolyze ATP and drive the transport
reaction. For these transporters the ABCs and TMs are on
independent polypeptide chains. These systems transport
a diverse range of substrates. Most are specific for a
single substrate or a group of related substrates;
however some transporters are more promiscuous,
transporting structurally diverse substrates such as the
histidine/lysine and arginine transporter in
Enterobacteriaceae. In the latter case, this is achieved
through binding different PBPs with different
specificities to the TMs. For other promiscuous
transporters such as the multiple-sugar transporter Msm
of Streptococcus mutans, the PBP has a wide substrate
specificity. These transporters include the
maltose-maltodextrin, phosphate and sulfate
transporters, among others.
Length = 190
Score = 26.5 bits (59), Expect = 8.1
Identities = 9/75 (12%), Positives = 27/75 (36%), Gaps = 10/75 (13%)
Query: 65 FVVAVGGTVIGVIWGFLTGFVTRFTNEV--RVIEPIFIFVMA--------YLAYLTAEIF 114
++A+ T++ ++ G L G + R++ I +++ L L +
Sbjct: 5 LLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLL 64
Query: 115 HMSGILAITFCGITM 129
+ + + +
Sbjct: 65 GWGILPGLGLPALIL 79
>gnl|CDD|185511 PTZ00199, PTZ00199, high mobility group protein; Provisional.
Length = 94
Score = 25.6 bits (56), Expect = 8.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEA 43
KK+ K +K K+KKK K+ + +MF A
Sbjct: 3 KKQGKVLVRKNKRKKKDPNAPKRALSAYMFFA 34
>gnl|CDD|71622 pfam08188, Protamine_3, Spermatozal protamine family. This
family consists of the spermatozal protamines.
Spermatozal protamines play an important role in
remodelling of the sperm chromatin during mammalian
spermiogenesis. Nuclear elongation and chromatin
condensation are concomitant with modifications in the
basic protein complement associated with DNA. Somatic
histones are initially replaced by testis -specific
histone variants, then by transitional proteins, and
ultimately by protamines.
Length = 48
Score = 24.8 bits (53), Expect = 8.3
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 9 RENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAY 44
R KKK+K +++K +K ++K+K L F+A+
Sbjct: 2 RRRHSMKKKRKSVRRRKTRKNQRKRKNSLGRSFKAH 37
>gnl|CDD|200272 TIGR03409, urea_trans_UrtB, urea ABC transporter, permease protein
UrtB. Members of this protein family are ABC
transporter permease proteins associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 291
Score = 26.8 bits (60), Expect = 8.3
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 15/55 (27%)
Query: 63 SFFVVAVGGTVIGVIWG-----FLTGFVTRF----TNEV--RVIEPIFIFVMAYL 106
SF VV GG +G +WG F G + + T +V+ + + ++ +L
Sbjct: 228 SFLVVVFGG--VGSLWGTVVAAFGLGVLNKILEYFTGASLAKVL--VLVLIILFL 278
>gnl|CDD|201540 pfam00992, Troponin, Troponin. Troponin (Tn) contains three
subunits, Ca2+ binding (TnC), inhibitory (TnI), and
tropomyosin binding (TnT). this Pfam contains members of
the TnT subunit. Troponin is a complex of three
proteins, Ca2+ binding (TnC), inhibitory (TnI), and
tropomyosin binding (TnT). The troponin complex
regulates Ca++ induced muscle contraction. This family
includes troponin T and troponin I. Troponin I binds to
actin and troponin T binds to tropomyosin.
Length = 131
Score = 26.0 bits (58), Expect = 8.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K+ KE E+ KKK + K KK KK +K
Sbjct: 74 KKDKEIEDLKKKVNDLRGKFKKPTLKKVRKS 104
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 26.7 bits (59), Expect = 8.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKK 33
+R KK KKK K+KK+KK
Sbjct: 206 SLKRNPPKKSNIMSSFFKKKTKEKKEKK 233
Score = 26.7 bits (59), Expect = 8.8
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTE 46
K + + +K + K K K+ KK ++ F+ T+
Sbjct: 183 KTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTK 227
>gnl|CDD|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional.
Length = 393
Score = 26.9 bits (60), Expect = 8.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
KLK++K++ K + ++ K KKK KK
Sbjct: 361 KLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
>gnl|CDD|227102 COG4760, COG4760, Predicted membrane protein [Function unknown].
Length = 276
Score = 26.8 bits (59), Expect = 8.8
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 53 LYVDLLSGLASFFVVAVG------GTVIGVIWGFLTGFVTRF 88
L V L++ + SFF+V V T++G I G + V F
Sbjct: 62 LAVLLVTAVVSFFLVLVNPALAMPLTLVGAIGGLILVLVATF 103
>gnl|CDD|216447 pfam01346, FKBP_N, Domain amino terminal to FKBP-type
peptidyl-prolyl isomerase. This family is only found at
the amino terminus of pfam00254. This domain is of
unknown function.
Length = 124
Score = 26.0 bits (58), Expect = 9.0
Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKK------KKKKKKRV 36
L+ +++ K++ K +KK ++ K + KK+ V
Sbjct: 74 LQAFQKKLQAKQQAKAEKKAEENKAAGEAFLAENAKKEGV 113
>gnl|CDD|235971 PRK07219, PRK07219, DNA topoisomerase I; Validated.
Length = 822
Score = 26.9 bits (60), Expect = 9.0
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K +K+KK+K+ K + + K K
Sbjct: 760 PKCNYTEKQKKEKESKSELEALKGVGAKT 788
>gnl|CDD|197711 smart00414, H2A, Histone 2A.
Length = 106
Score = 25.8 bits (57), Expect = 9.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 100 IFVMAYLAYLTAEIFHMSGILA 121
+++ A L YLTAE+ ++G A
Sbjct: 34 VYLAAVLEYLTAEVLELAGNAA 55
>gnl|CDD|215059 PLN00111, PLN00111, accumulation of photosystem one; Provisional.
Length = 399
Score = 26.5 bits (59), Expect = 9.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 1 MKLKRRKERENKKKKKKKKKK 21
MKL RR+ RE KK +K + ++
Sbjct: 59 MKLLRREAREKKKLRKLQPER 79
>gnl|CDD|219835 pfam08426, ICE2, ICE2. ICE2 is a fungal ER protein which has been
shown to play an important role in forming/maintaining
the cortical ER. It has also bee identified as a protein
which is necessary for nuclear inner membrane targeting.
Length = 406
Score = 26.6 bits (59), Expect = 9.4
Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 144 TVKYAMKMLSSS-----SETIIFMFLGISTISDAHVWNTAFVILTIFFCS 188
+ +K LS+S E F+++ I T++ + + N A+ I +F+ +
Sbjct: 260 SYSTLIKFLSASLPSSIKEIFQFLYMAIQTVTPSVLINLAYRIG-VFYAA 308
>gnl|CDD|220633 pfam10214, Rrn6, RNA polymerase I-specific transcription-initiation
factor. RNA polymerase I-specific
transcription-initiation factor Rrn6 and Rrn7 represent
components of a multisubunit transcription factor
essential for the initiation of rDNA transcription by
Pol I. These proteins are found in fungi.
Length = 753
Score = 26.6 bits (59), Expect = 9.4
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 9 RENKKKKKKKKKK 21
R KKKKKKK+K
Sbjct: 738 RSASKKKKKKKRK 750
>gnl|CDD|153271 cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization
module that binds membranes and detects membrane
curvature. BAR domains are dimerization, lipid binding
and curvature sensing modules found in many different
proteins with diverse functions including organelle
biogenesis, membrane trafficking or remodeling, and cell
division and migration. Mutations in BAR containing
proteins have been linked to diseases and their
inactivation in cells leads to altered membrane
dynamics. A BAR domain with an additional N-terminal
amphipathic helix (an N-BAR) can drive membrane
curvature. These N-BAR domains are found in amphiphysins
and endophilins, among others. BAR domains are also
frequently found alongside domains that determine lipid
specificity, such as the Pleckstrin Homology (PH) and
Phox Homology (PX) domains which are present in beta
centaurins (ACAPs and ASAPs) and sorting nexins,
respectively. A FES-CIP4 Homology (FCH) domain together
with a coiled coil region is called the F-BAR domain and
is present in Pombe/Cdc15 homology (PCH) family
proteins, which include Fes/Fes tyrosine kinases, PACSIN
or syndapin, CIP4-like proteins, and srGAPs, among
others. The Inverse (I)-BAR or IRSp53/MIM homology
Domain (IMD) is found in multi-domain proteins, such as
IRSp53 and MIM, that act as scaffolding proteins and
transducers of a variety of signaling pathways that link
membrane dynamics and the underlying actin cytoskeleton.
BAR domains form dimers that bind to membranes, induce
membrane bending and curvature, and may also be involved
in protein-protein interactions. The I-BAR domain
induces membrane protrusions in the opposite direction
compared to classical BAR and F-BAR domains, which
produce membrane invaginations. BAR domains that also
serve as protein interaction domains include those of
arfaptin and OPHN1-like proteins, among others, which
bind to Rac and Rho GAP domains, respectively.
Length = 194
Score = 26.3 bits (58), Expect = 9.5
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 9/53 (16%)
Query: 4 KRRKERENKKK---------KKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTEM 47
KRRK+ + + KK +KKKK K + +++ + +E E
Sbjct: 98 KRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEELREE 150
>gnl|CDD|218215 pfam04696, Pinin_SDK_memA, pinin/SDK/memA/ protein conserved
region. Members of this family have very varied
localisations within the eukaryotic cell. pinin is
known to localise at the desmosomes and is implicated
in anchoring intermediate filaments to the desmosomal
plaque. SDK2/3 is a dynamically localised nuclear
protein thought to be involved in modulation of
alternative pre-mRNA splicing. memA is a tumour marker
preferentially expressed in human melanoma cell lines.
A common feature of the members of this family is that
they may all participate in regulating protein-protein
interactions.
Length = 131
Score = 25.9 bits (57), Expect = 9.9
Identities = 9/45 (20%), Positives = 27/45 (60%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTE 46
+ K+ +E K+K++ +++++K+ + +K ++K + E + E
Sbjct: 47 QEKQEREELRKEKRELFEERRRKQLELRKLEQKMEDEKLQETWHE 91
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.137 0.395
Gapped
Lambda K H
0.267 0.0755 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,021,599
Number of extensions: 983521
Number of successful extensions: 17990
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12874
Number of HSP's successfully gapped: 1933
Length of query: 195
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 103
Effective length of database: 6,857,034
Effective search space: 706274502
Effective search space used: 706274502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.3 bits)