RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1930
(195 letters)
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 32.6 bits (74), Expect = 0.019
Identities = 9/32 (28%), Positives = 23/32 (71%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
+ +EN+K+++ ++K ++ K K+K +K+R+
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKERL 332
Score = 30.3 bits (68), Expect = 0.14
Identities = 6/33 (18%), Positives = 19/33 (57%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ + K+++ ++K ++ K K+K +K++
Sbjct: 299 MFLQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 25.7 bits (56), Expect = 4.2
Identities = 5/33 (15%), Positives = 18/33 (54%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ + +K+++ ++K ++ K K+K ++
Sbjct: 297 RNMFLQAVKENQKRRETEEKMRRAKLAKEKAEK 329
>d1wvka_ g.82.1.1 (A:) Expressed protein At2g23090/F21P24.15
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 86
Score = 29.0 bits (65), Expect = 0.11
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKK 32
K R +K K K + + KK
Sbjct: 16 KSAMARAKNLEKAKAAGKGSQLEANKKAM 44
Score = 26.3 bits (58), Expect = 0.98
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKK 30
K + + +K K K + + KK
Sbjct: 16 KSAMARAKNLEKAKAAGKGSQLEANKKAM 44
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 29.8 bits (67), Expect = 0.11
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAY---TEMGHNNVLYVDLLSG 60
K K K K +++ K + + +K++ V + Y +M N L G
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDG 53
Score = 26.8 bits (59), Expect = 1.0
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 11 NKKKKKKKKKKKKKKKKKKKKK 32
NK K K +++ K + + +K++
Sbjct: 3 NKGKGGKNRRRGKNENESEKRE 24
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 30.1 bits (68), Expect = 0.14
Identities = 6/27 (22%), Positives = 18/27 (66%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKK 33
++E KK+ ++KK+ + +++K ++
Sbjct: 103 LQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 28.9 bits (65), Expect = 0.31
Identities = 7/30 (23%), Positives = 19/30 (63%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRVLYHMF 41
+K++KK+ ++KK+ + +++K + F
Sbjct: 103 LQKEQKKQLTSQEKKQIRLEREKFEEDYKF 132
Score = 28.1 bits (63), Expect = 0.59
Identities = 6/37 (16%), Positives = 22/37 (59%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLY 38
K+ + + ++KK+ ++KK+ + +++K ++ +
Sbjct: 96 KMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEEDYKF 132
Score = 27.4 bits (61), Expect = 0.91
Identities = 5/29 (17%), Positives = 17/29 (58%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKRVLYHMF 41
+ +K++KK+ ++KK+ + ++ +
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEEDY 130
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 29.7 bits (67), Expect = 0.17
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKK 33
+ E +K+ K++K K K++ +K K+
Sbjct: 111 AQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 28.5 bits (64), Expect = 0.38
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRVLYHMF 41
+ + +K+ K++K K K++ +K + + F
Sbjct: 111 AQTEARKQMSKEEKLKIKEENEKLLKEYGF 140
Score = 27.4 bits (61), Expect = 0.87
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKRVLY 38
+ + + +K+ K++K K K++ +K K +
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKEYGF 140
Score = 27.4 bits (61), Expect = 1.1
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKRVLYHMF 41
K + + +K+ K++K K K++ L +
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKEY 138
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 28.7 bits (64), Expect = 0.19
Identities = 4/34 (11%), Positives = 13/34 (38%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ +R+ + K + + K+ K++
Sbjct: 62 EQQRQYKVHLDLWVKSLSPQDRAAYKEYISNKRK 95
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 86
Score = 27.9 bits (62), Expect = 0.23
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKK 30
K ++ + + KKKK+K++K
Sbjct: 58 KERQLHMQLYPGWSARDNYGKKKKRKREK 86
Score = 27.5 bits (61), Expect = 0.30
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
++ ++ + + KKKK+K++K
Sbjct: 57 RKERQLHMQLYPGWSARDNYGKKKKRKREK 86
Score = 27.1 bits (60), Expect = 0.45
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
RKER+ + + KKKK+K+++
Sbjct: 55 LARKERQLHMQLYPGWSARDNYGKKKKRKREK 86
Score = 25.2 bits (55), Expect = 2.0
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+L R++ + + + + KKKK+K++K
Sbjct: 53 YELARKERQLHMQLYPGWSARDNYGKKKKRKREK 86
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 28.3 bits (63), Expect = 0.35
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTE 46
+ KR ERE +K ++ K K+K +K EA+
Sbjct: 69 LAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLA 114
>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 314
Score = 28.9 bits (64), Expect = 0.43
Identities = 7/48 (14%), Positives = 22/48 (45%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTEMGHNN 51
K+++E + K+ ++ +K K + K + ++ + + + N
Sbjct: 249 KKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLN 296
Score = 25.4 bits (55), Expect = 5.5
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ ++KE NK+ K+ ++ +K K + K
Sbjct: 246 WISKKKEEYNKQAKQYQEYQKGNNYKMYSEFKS 278
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 27.6 bits (61), Expect = 0.46
Identities = 4/33 (12%), Positives = 16/33 (48%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ K+ E E + + ++++++ ++K
Sbjct: 69 QKKKDYEVELLRFLESLPEEEQQRVLGEEKMLN 101
Score = 25.7 bits (56), Expect = 2.3
Identities = 3/33 (9%), Positives = 12/33 (36%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K E + ++++++ ++K
Sbjct: 71 KKDYEVELLRFLESLPEEEQQRVLGEEKMLNIS 103
Score = 25.3 bits (55), Expect = 2.7
Identities = 2/32 (6%), Positives = 16/32 (50%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
++K+ + + + ++++++ ++K
Sbjct: 68 DQKKKDYEVELLRFLESLPEEEQQRVLGEEKM 99
Score = 23.8 bits (51), Expect = 9.9
Identities = 4/27 (14%), Positives = 8/27 (29%)
Query: 15 KKKKKKKKKKKKKKKKKKKKRVLYHMF 41
+ K K + K Y ++
Sbjct: 2 SSGSSGQLKDKFDGRPTKPPPNSYSLY 28
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 337
Score = 28.5 bits (63), Expect = 0.52
Identities = 4/38 (10%), Positives = 13/38 (34%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYH 39
+L R + +++ + + R++ H
Sbjct: 108 ELDRTLDVPEDHDPDAAEEQIRDAHEAGDLGDLRLITH 145
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 26.8 bits (59), Expect = 0.65
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRVLYHMF 41
++ KK+ +KKK K+ Y F
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKRALSAYMFF 31
Score = 24.1 bits (52), Expect = 6.4
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 7 KERENKKKKKKKKKKKKKKKK 27
RE KK+ +KKK K+
Sbjct: 3 TPREPKKRTTRKKKDPNAPKR 23
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 27.7 bits (61), Expect = 0.93
Identities = 4/31 (12%), Positives = 15/31 (48%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
K+ + + +K++ K K+ + +++
Sbjct: 208 KDNAHNVTVDLEMRKQRNKTTKQVRTIEKIT 238
Score = 27.7 bits (61), Expect = 0.99
Identities = 5/35 (14%), Positives = 15/35 (42%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
++ + N + +K++ K K+ + +K
Sbjct: 204 EISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKIT 238
Score = 26.5 bits (58), Expect = 2.0
Identities = 3/33 (9%), Positives = 12/33 (36%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHM 40
++ + +K++ K K+ + +
Sbjct: 206 SWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKIT 238
Score = 25.0 bits (54), Expect = 7.2
Identities = 4/34 (11%), Positives = 12/34 (35%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYT 45
+ +K++ K K+ R + + +
Sbjct: 209 DNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIES 242
>d1f3ub_ b.65.1.1 (B:) TFIIF alpha subunit, Rap74 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 149
Score = 27.1 bits (60), Expect = 1.0
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKK 29
RK RE ++KK K+ + + +
Sbjct: 68 NRKLREEARRKKYGIVLKEFRPEDQ 92
Score = 25.2 bits (55), Expect = 3.7
Identities = 5/33 (15%), Positives = 16/33 (48%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHM 40
E +K +++ ++KK K+ + + + +
Sbjct: 64 GSEFNRKLREEARRKKYGIVLKEFRPEDQPWLL 96
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 26.7 bits (58), Expect = 1.2
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKK 31
L+ E+E KK + +++ K K K +
Sbjct: 83 EVLEGEVEKEALKKIIEDQQESLNKWKSKGR 113
Score = 25.9 bits (56), Expect = 1.6
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKKR 35
E E +K+ KK + +++ K K K R
Sbjct: 85 LEGEVEKEALKKIIEDQQESLNKWKSKGR 113
Score = 24.8 bits (53), Expect = 4.6
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKK 33
E E + KK + +++ K K K +
Sbjct: 85 LEGEVEKEALKKIIEDQQESLNKWKSKGR 113
>d1zroa1 a.264.1.1 (A:8-282) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 275
Score = 27.3 bits (60), Expect = 1.2
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ + E K+ + +K K+ + K
Sbjct: 221 RSKFEWHTLSKEYETQKVPKENAENYLIKISE 252
Score = 25.8 bits (56), Expect = 3.9
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
+ R K + K+ + +K K+ + K
Sbjct: 219 IIRSKFEWHTLSKEYETQKVPKENAENYLIKI 250
Score = 25.8 bits (56), Expect = 4.0
Identities = 7/44 (15%), Positives = 17/44 (38%)
Query: 10 ENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTEMGHNNVL 53
K + K+ + +K K+ + L + E + + +L
Sbjct: 220 IRSKFEWHTLSKEYETQKVPKENAENYLIKISENKNDAKVSLLL 263
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 26.3 bits (58), Expect = 1.2
Identities = 3/23 (13%), Positives = 10/23 (43%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKK 34
K+ + + K+ +K++
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
Score = 25.9 bits (57), Expect = 1.5
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKR 35
K+ + + K+ +KR
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKR 100
Score = 25.2 bits (55), Expect = 3.1
Identities = 3/30 (10%), Positives = 10/30 (33%)
Query: 3 LKRRKERENKKKKKKKKKKKKKKKKKKKKK 32
L + + + K+ +K++
Sbjct: 72 LWNHGILKEVVPEGYEMKRVGDYYVFEKRE 101
Score = 24.4 bits (53), Expect = 5.8
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKK 24
+K + E K+ +K++
Sbjct: 78 LKEVVPEGYEMKRVGDYYVFEKRE 101
>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1,
MRG15 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 26.0 bits (57), Expect = 1.2
Identities = 4/26 (15%), Positives = 14/26 (53%)
Query: 6 RKERENKKKKKKKKKKKKKKKKKKKK 31
K + +K+++ +K +++ + K
Sbjct: 58 LKYVDTNLQKQRELQKANQEQYAEGK 83
Score = 23.3 bits (50), Expect = 9.8
Identities = 3/25 (12%), Positives = 13/25 (52%)
Query: 9 RENKKKKKKKKKKKKKKKKKKKKKK 33
+ +K+++ +K +++ + K
Sbjct: 59 KYVDTNLQKQRELQKANQEQYAEGK 83
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 26.6 bits (58), Expect = 1.4
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKK 32
ER K K++ + + + + +K+
Sbjct: 157 ERLPKPKREAFLEANRAELVRFQKE 181
Score = 25.1 bits (54), Expect = 5.6
Identities = 3/22 (13%), Positives = 11/22 (50%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKK 33
K K++ + + + + +K+
Sbjct: 160 PKPKREAFLEANRAELVRFQKE 181
Score = 25.1 bits (54), Expect = 5.6
Identities = 3/22 (13%), Positives = 11/22 (50%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKK 34
K K++ + + + + +K+
Sbjct: 160 PKPKREAFLEANRAELVRFQKE 181
Score = 24.7 bits (53), Expect = 7.7
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 2 KLKRRKERENKKKKKKKKKKK 22
K KR E + + + +K+
Sbjct: 161 KPKREAFLEANRAELVRFQKE 181
Score = 24.7 bits (53), Expect = 7.8
Identities = 3/22 (13%), Positives = 10/22 (45%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKR 35
K K++ + + + + +K
Sbjct: 160 PKPKREAFLEANRAELVRFQKE 181
>d1kvva_ d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 104
Score = 26.2 bits (58), Expect = 1.4
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 2 KLKRRKERENKKKKKKKKKKK 22
K+ +E++ ++KK KKKKKK
Sbjct: 84 KIAEIREQKREQKKDKKKKKK 104
Score = 25.5 bits (56), Expect = 2.0
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
K + E +K + +++K+++KK KKKKKK
Sbjct: 74 KTKLMIELARKIAEIREQKREQKKDKKKKKK 104
Score = 25.5 bits (56), Expect = 2.4
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKK 32
K K E K + +++K+++KK KKKKKK
Sbjct: 74 KTKLMIELARKIAEIREQKREQKKDKKKKKK 104
Score = 25.5 bits (56), Expect = 2.5
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKK 27
M RK E +++K+++KK KKKKKK
Sbjct: 78 MIELARKIAEIREQKREQKKDKKKKKK 104
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 25.5 bits (56), Expect = 1.9
Identities = 6/24 (25%), Positives = 7/24 (29%)
Query: 19 KKKKKKKKKKKKKKKKRVLYHMFE 42
+K KKK L F
Sbjct: 2 SSGSSGRKPPPKKKMTGTLETQFT 25
Score = 25.5 bits (56), Expect = 1.9
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 12 KKKKKKKKKKKKKKKKKK 29
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 25.5 bits (56), Expect = 1.9
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 13 KKKKKKKKKKKKKKKKKK 30
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 25.5 bits (56), Expect = 1.9
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 14 KKKKKKKKKKKKKKKKKK 31
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 25.5 bits (56), Expect = 1.9
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 15 KKKKKKKKKKKKKKKKKK 32
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 25.5 bits (56), Expect = 1.9
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 16 KKKKKKKKKKKKKKKKKK 33
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 25.5 bits (56), Expect = 1.9
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 17 KKKKKKKKKKKKKKKKKK 34
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 24.3 bits (53), Expect = 5.0
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 18 KKKKKKKKKKKKKKKKKR 35
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 248
Score = 26.5 bits (58), Expect = 2.1
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
K + E+ +K K + + KK +KK + K
Sbjct: 122 KYQTEQRSKGDALDKCQAELKKLRKKSQGSKNP 154
>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus
thermophilus [TaxId: 274]}
Length = 138
Score = 26.1 bits (57), Expect = 2.1
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKK 31
+ RRK R ++K+ + + ++ K++ +K
Sbjct: 108 REIRRKLRADRKRIDQDRAAERAAKEEAQK 137
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta)
DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 25.5 bits (55), Expect = 2.3
Identities = 4/32 (12%), Positives = 17/32 (53%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKK 32
+ + K+K ++ ++K+++++ +K
Sbjct: 72 ATDLVLDDSKRLAKRKLIEENREKRRREELEK 103
Score = 25.5 bits (55), Expect = 2.7
Identities = 4/35 (11%), Positives = 21/35 (60%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ + ++ K+ K+K ++ ++K+++++ ++
Sbjct: 69 VGMATDLVLDDSKRLAKRKLIEENREKRRREELEK 103
Score = 24.4 bits (52), Expect = 5.2
Identities = 4/33 (12%), Positives = 17/33 (51%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
+ + + K+ K+K ++ ++K++++
Sbjct: 67 IYVGMATDLVLDDSKRLAKRKLIEENREKRRRE 99
>d2c6ja1 a.264.1.1 (A:15-308) Duffy receptor, alpha form {Plasmodium
knowlesi [TaxId: 5850]}
Length = 294
Score = 26.5 bits (58), Expect = 2.4
Identities = 8/51 (15%), Positives = 18/51 (35%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTEMGHNNVLY 54
+++K+ + K KK +K + +L + E N +
Sbjct: 230 RKKKQWDVLSTKFSSVKKTQKIGTENIATAYDILKQELNGFKEATFENEIN 280
>d1xu6a_ g.16.3.1 (A:) Variant surface glycoprotein MITAT 1.2, VSG
221, C-terminal domain {Trypanosoma brucei brucei
[TaxId: 5702]}
Length = 80
Score = 24.9 bits (54), Expect = 2.6
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 4 KRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
K + ENKK K++ KK + K K
Sbjct: 41 KWHNDAENKKCTLDKEEAKKVADETAKDGK 70
Score = 23.8 bits (51), Expect = 6.1
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKR 35
+ + KK K++ KK + K +
Sbjct: 43 HNDAENKKCTLDKEEAKKVADETAKDGK 70
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA
probable tRNA-binding arm {Staphylococcus aureus
[TaxId: 1280]}
Length = 65
Score = 24.7 bits (54), Expect = 2.7
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEA 43
+L ++ NK K K +K+ + KK K+ L +A
Sbjct: 7 ELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDA 48
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I,
dispensable insert domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 72
Score = 24.4 bits (53), Expect = 3.7
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 8 ERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
R+ K K K K K KK + KK+ +
Sbjct: 22 RRDLKSAKADAKVMKDAKTKKVVESKKKAV 51
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 24.1 bits (52), Expect = 4.1
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKK 30
K + K K K K+ +K
Sbjct: 40 KSYARQYFKNKVKCGLDKETPNQK 63
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 96
Score = 24.7 bits (54), Expect = 4.5
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKK 32
+ +++ E KKK ++ + K+K K +
Sbjct: 61 IDIQKGASDEEVKKKLEESNLTEYMKEKIKIR 92
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId:
9606]}
Length = 117
Score = 24.6 bits (53), Expect = 6.1
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKK 34
KE+ + K KKK + K
Sbjct: 87 KEQITQHIADLSSKAAGTPKKKAVVQAK 114
Score = 24.2 bits (52), Expect = 6.6
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKKKK 29
K + + + K KKK + K
Sbjct: 87 KEQITQHIADLSSKAAGTPKKKAVVQAK 114
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 24.2 bits (52), Expect = 6.4
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKR 35
K ++ K +K KR
Sbjct: 2 SSGSSGKPSQEGGKGGSEKPKR 23
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1,
MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 291
Score = 24.7 bits (52), Expect = 7.6
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYH 39
MK+ K++ N++ K+ + + K+KK +V +
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFD 39
>d2qaln1 g.39.1.7 (N:1-100) Ribosomal protein S14 {Escherichia
coli [TaxId: 562]}
Length = 100
Score = 23.6 bits (51), Expect = 8.3
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 7 KERENKKKKKKKKKKKKKKKKKKKKKKK 34
K RE K+ K K+ + K
Sbjct: 6 KAREVKRVALADKYFAKRAELKAIISDV 33
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 68
Score = 23.3 bits (50), Expect = 8.9
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 1 MKLKRRKERENKKKKKKKKKKKKKKK 26
M+LKR+ +++K +++++ K
Sbjct: 1 MELKRKTTNADRRKAATMRERRRLSK 26
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 23.3 bits (50), Expect = 9.4
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 2 KLKRRKERENKKKKKKKKKKKKKKKK 27
KL+ + K + ++K K K
Sbjct: 60 KLQAMHREKYPNYKYRPRRKAKMLPK 85
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 237
Score = 24.3 bits (52), Expect = 9.8
Identities = 9/57 (15%), Positives = 22/57 (38%)
Query: 5 RRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGL 61
R + + KK + ++ KKK++ K + +A + + + + L
Sbjct: 142 REIQSALQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNL 198
>d1h3za_ b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fission
yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 108
Score = 23.9 bits (51), Expect = 10.0
Identities = 4/20 (20%), Positives = 6/20 (30%)
Query: 10 ENKKKKKKKKKKKKKKKKKK 29
+ +K K K K
Sbjct: 71 SEAISQFLEKPKPKTASLIK 90
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.137 0.395
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 717,375
Number of extensions: 34158
Number of successful extensions: 1209
Number of sequences better than 10.0: 1
Number of HSP's gapped: 775
Number of HSP's successfully gapped: 205
Length of query: 195
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 114
Effective length of database: 1,295,466
Effective search space: 147683124
Effective search space used: 147683124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.4 bits)