BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1931
(145 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UQ35|SRRM2_HUMAN Serine/arginine repetitive matrix protein 2 OS=Homo sapiens
GN=SRRM2 PE=1 SV=2
Length = 2752
Score = 101 bits (252), Expect = 1e-21, Method: Composition-based stats.
Identities = 57/98 (58%), Positives = 77/98 (78%), Gaps = 1/98 (1%)
Query: 1 MYNGIGLTTARGSGTNGYVQRNWSLVRKTK-EKTNLKTEKDLERMDAMNNKQPNREILDH 59
MYNGIGL T RGSGTNGYVQRN SLVR + E+ + K E++L R++A K+PN +ILDH
Sbjct: 1 MYNGIGLPTPRGSGTNGYVQRNLSLVRGRRGERPDYKGEEELRRLEAALVKRPNPDILDH 60
Query: 60 EKKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHL 97
E+KR++EL+CLEL+E++EEQG+ E ++ KV +RL L
Sbjct: 61 ERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLML 98
>sp|Q8BTI8|SRRM2_MOUSE Serine/arginine repetitive matrix protein 2 OS=Mus musculus
GN=Srrm2 PE=1 SV=3
Length = 2703
Score = 99.0 bits (245), Expect = 1e-20, Method: Composition-based stats.
Identities = 56/98 (57%), Positives = 76/98 (77%), Gaps = 1/98 (1%)
Query: 1 MYNGIGLTTARGSGTNGYVQRNWSLVRKTK-EKTNLKTEKDLERMDAMNNKQPNREILDH 59
MYNGIGL T RGSGTNGYVQRN SLVR + E+ + K E++L ++A K+PN +ILDH
Sbjct: 1 MYNGIGLPTPRGSGTNGYVQRNLSLVRGRRGERPDYKGEEELRHLEAALVKRPNPDILDH 60
Query: 60 EKKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHL 97
E+KR++EL+CLEL+E++EEQG+ E ++ KV +RL L
Sbjct: 61 ERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLML 98
>sp|Q4P0G6|CWC21_USTMA Pre-mRNA-splicing factor CWC21 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=CWC21 PE=3 SV=1
Length = 348
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 68/118 (57%), Gaps = 5/118 (4%)
Query: 1 MYNGIGLTTARGSGTNGYVQRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHE 60
MYNGIGL TARG+GTNGYVQRN S K++ N + D + + P+ IL+HE
Sbjct: 1 MYNGIGLKTARGTGTNGYVQRNLSNFEAGKKRWNKRDATD--EVGSDTRLGPDAAILEHE 58
Query: 61 KKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHLNKN-VEKINEPPLD--ELGRV 115
+KR +E++C+EL+ LE+ + E++ +V R LN E+ NE E GR
Sbjct: 59 RKRAVEVKCMELRVELEDDDVADDEIEERVAQLRETLNAQLAEQTNESAASSYESGRA 116
>sp|P0CM94|CWC21_CRYNJ Pre-mRNA-splicing factor CWC21 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=CWC21 PE=3 SV=1
Length = 205
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 13/127 (10%)
Query: 1 MYNGIGLTTARGSGTNGYVQRNWSLVR-----KTKEKTNLKTEKDLERMDAMN-NKQPNR 54
MY +GL TARGSGTNGYV RN + +R + + LE + ++ P++
Sbjct: 1 MYGNVGLATARGSGTNGYVTRNTAHLRIREGPPGGQPYGSGYDALLESVSKPPIHRAPDQ 60
Query: 55 EILDHEKKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHLNKNVEKINEPPLDELGR 114
IL+HE+KR++E++ +EL++ LEE+G E +++ + R L E++ GR
Sbjct: 61 GILEHERKRRVEVKVMELRDELEEKGMEEDDIEEECSKLRQKLTAQPEQLG-------GR 113
Query: 115 VMDDTSL 121
+D SL
Sbjct: 114 GLDTHSL 120
>sp|P0CM95|CWC21_CRYNB Pre-mRNA-splicing factor CWC21 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=CWC21 PE=3
SV=1
Length = 205
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 13/127 (10%)
Query: 1 MYNGIGLTTARGSGTNGYVQRNWSLVR-----KTKEKTNLKTEKDLERMDAMN-NKQPNR 54
MY +GL TARGSGTNGYV RN + +R + + LE + ++ P++
Sbjct: 1 MYGNVGLATARGSGTNGYVTRNTAHLRIREGPPGGQPYGSGYDALLESVSKPPIHRAPDQ 60
Query: 55 EILDHEKKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHLNKNVEKINEPPLDELGR 114
IL+HE+KR++E++ +EL++ LEE+G E +++ + R L E++ GR
Sbjct: 61 GILEHERKRRVEVKVMELRDELEEKGMEEDDIEEECSKLRQKLTAQPEQLG-------GR 113
Query: 115 VMDDTSL 121
+D SL
Sbjct: 114 GLDTHSL 120
>sp|Q80WV7|SRRM3_MOUSE Serine/arginine repetitive matrix protein 3 OS=Mus musculus
GN=Srrm3 PE=2 SV=1
Length = 648
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/62 (46%), Positives = 46/62 (74%)
Query: 36 KTEKDLERMDAMNNKQPNREILDHEKKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRL 95
+ E++L + K+ +REILDHE+KR++EL+C+ELQE++EEQG++E E+ KV +R
Sbjct: 34 RAEEELRAAEPGLVKRAHREILDHERKRRVELKCMELQEMMEEQGYSEEEIRQKVGTFRQ 93
Query: 96 HL 97
L
Sbjct: 94 ML 95
>sp|O14161|CWC21_SCHPO Pre-mRNA-splicing factor cwf21 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=cwf21 PE=1 SV=2
Length = 293
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 2 YNGIGLTTARGSGTNGYVQRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHEK 61
YNGIGL T RGSGTNGYV RN S V+K + TNL++ ++ + A+ + + I +HE
Sbjct: 3 YNGIGLPTPRGSGTNGYVMRNLSHVKKYDKNTNLQSNRNAK---ALEKRVQDPSISEHEC 59
Query: 62 KRKIELQCLELQELLEEQGFNEIEVDAKV 90
+R+IE + L +E L E+ ++ DA
Sbjct: 60 RRQIESKLLLYREQLLEEVSSQHSTDAAA 88
>sp|A6NNA2|SRRM3_HUMAN Serine/arginine repetitive matrix protein 3 OS=Homo sapiens
GN=SRRM3 PE=2 SV=4
Length = 597
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 6/95 (6%)
Query: 3 NGIGLTTARGSGTNGYVQRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHEKK 62
NG + NG+ Q + + T + E++L + K+ +REILDHE+K
Sbjct: 7 NGAASMQSTPDAANGFPQPS------SSSGTWPRAEEELRAAEPGLVKRAHREILDHERK 60
Query: 63 RKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHL 97
R++EL+C+ELQE++EEQG++E E+ KV +R L
Sbjct: 61 RRVELKCMELQEMMEEQGYSEEEIRQKVGTFRQML 95
>sp|Q5AP89|CWC21_CANAL Pre-mRNA-splicing factor CWC21 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=CWC21 PE=3 SV=1
Length = 162
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 11/108 (10%)
Query: 2 YNGIGLTTARGSGTNGYVQRNWS-LVRKTKEKTNLKTEKDL--ERMDAMNNKQPNRE--- 55
YNGIGL + RGS T+G++Q+N + + K + K +K L +R D Q RE
Sbjct: 3 YNGIGLQSVRGSATSGHIQKNIANKISKPGHYESRKNQKSLMSKRADEAKQSQNKREAYK 62
Query: 56 -----ILDHEKKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHLN 98
+ HE+ R+IE++C++L + LEEQG E A+V R LN
Sbjct: 63 QIKSELTKHEQLRRIEVKCMDLHDELEEQGVEPDETKARVDELRKKLN 110
>sp|Q6C0M9|CWC21_YARLI Pre-mRNA-splicing factor CWC21 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=CWC21 PE=3 SV=1
Length = 284
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 18/90 (20%)
Query: 2 YNGIGLTTARGSGTNGYVQRNWSLVRKTKEKTNLKTE---------------KDLERMDA 46
YNGIGL+T RGS T+G++Q N S + + TN + E K L+R D
Sbjct: 3 YNGIGLSTPRGSATSGHIQTNIS--NRAFQSTNHRGEFAHHEMTDEQDKRLNKKLDR-DY 59
Query: 47 MNNKQPNREILDHEKKRKIELQCLELQELL 76
++Q + E+L+HE+KRK+E+ C+ELQ+ L
Sbjct: 60 AADRQADVELLEHERKRKVEVACMELQDKL 89
>sp|Q6BWB8|CWC21_DEBHA Pre-mRNA-splicing factor CWC21 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=CWC21 PE=3 SV=1
Length = 179
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 20/109 (18%)
Query: 3 NGIGLTTARGSGTNGYVQRNWSLVRKTKEKTNLKTEKD----------------LERMDA 46
NGIGL TARGSGT G++Q+N V K+ ++K +K + +
Sbjct: 4 NGIGLQTARGSGTTGHIQKN---VASNKDHASIKDDKSGHFRRRQLSNDRKLKYDKHIST 60
Query: 47 MNNK-QPNREILDHEKKRKIELQCLELQELLEEQGFNEIEVDAKVMAYR 94
NN+ + +EI H+ KR +E++C+EL++ LE++ E+ ++ KV R
Sbjct: 61 RNNRDEAKQEIRSHDLKRDVEVKCMELRDALEDESEEELTIEKKVNELR 109
>sp|Q7RYH7|CWC21_NEUCR Pre-mRNA-splicing factor cwc-21 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=cwc-21 PE=3 SV=1
Length = 344
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 1 MYNGIGLTTARGSGTNGYVQRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHE 60
M + +GL+T RGSGT+GYVQRN + R ++ KD + + +QP++ +L+H+
Sbjct: 1 MSDNVGLSTPRGSGTSGYVQRNLAHFR-PRDNYQSYPPKDFDSL-KHQPRQPDKGLLEHD 58
Query: 61 KKRKIELQCLELQELL 76
+KR++E++ EL++ L
Sbjct: 59 RKREVEVKVFELRDKL 74
>sp|Q4IB70|CWC21_GIBZE Pre-mRNA-splicing factor CWC21 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=CWC21 PE=3
SV=1
Length = 182
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 1 MYNGIGLTTARGSGTNGYVQRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHE 60
M + +GL T RGSGT+GYVQRN + ++ KDL+ + +QP++ IL+H+
Sbjct: 1 MSDNVGLNTPRGSGTSGYVQRNLAHIKPRD--YGAPYPKDLDSL-RHKQRQPDKGILEHD 57
Query: 61 KKRKIELQCLELQELL 76
+KR++E++ +L++ L
Sbjct: 58 RKREVEVKVFDLRDKL 73
>sp|Q6CVR3|CWC21_KLULA Pre-mRNA-splicing factor CWC21 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=CWC21 PE=3 SV=2
Length = 113
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 57/97 (58%), Gaps = 4/97 (4%)
Query: 2 YNGIGLTTARGSGTNGYVQRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNRE--ILDH 59
YNGIGL++A+GS T+GYVQ++ + + K+ +K+ ++ QP ++ ++ H
Sbjct: 3 YNGIGLSSAKGSSTSGYVQQSLAFTNRKKDPRLTTHDKEQQQQQQQQQIQPAKDESVISH 62
Query: 60 EKKRKIELQCLELQELLEE--QGFNEIEVDAKVMAYR 94
+ KR+IEL E ++ LE+ ++ +D+K YR
Sbjct: 63 KAKRQIELLVSEYRDKLEDGPDDLSDDTIDSKCEDYR 99
>sp|Q4WDD0|CWC21_ASPFU Pre-mRNA-splicing factor cwc21 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=cwc21 PE=3 SV=1
Length = 217
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 9/77 (11%)
Query: 1 MYNGIGLTTARGSGTNGYVQRNWSLVRKTKE-------KTNLKTEKDLERMDAMNNKQPN 53
M + +GL+T RGSGT+GYVQRN++ ++ + D R +QP+
Sbjct: 1 MSSNVGLSTPRGSGTSGYVQRNYAFMKPRNAGYGAPYPPVSGANANDSSR--GFKQRQPD 58
Query: 54 REILDHEKKRKIELQCL 70
++IL+H+++R +E++ +
Sbjct: 59 KQILEHDRRRAVEVKVM 75
>sp|Q751G9|CWC21_ASHGO Pre-mRNA-splicing factor CWC21 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CWC21
PE=3 SV=1
Length = 125
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 2 YNGIGLTTARGSGTNGYVQRNWS--LVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDH 59
YNGIGL TA+GS T+G++QR+ + K ++ K E A ++ + + H
Sbjct: 3 YNGIGLKTAKGSSTSGHIQRSLADNQAGNVKNFSSRKEESQGRVARASRERKLDGSMAAH 62
Query: 60 EKKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHL 97
+R+IE++ EL++ LE+ + E++ + R L
Sbjct: 63 ADRREIEVRVSELRDELEDADIDAEEIERRCEQLRRQL 100
>sp|Q6FRM6|CWC21_CANGA Pre-mRNA-splicing factor CWC21 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=CWC21 PE=3 SV=1
Length = 143
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 55/93 (59%), Gaps = 14/93 (15%)
Query: 1 MYNGIGLTTARGSGTNGYVQRNWS---------LVR-KTKEKTNLKTEKDLERMDAMNNK 50
M G+GL +A+GS T+GYVQR+ + +VR K K K K +++D N+
Sbjct: 1 MGRGVGLQSAKGSSTSGYVQRSLAHDNRDDKTGIVRLKNKNYELRKITKRSQKVDKPANE 60
Query: 51 QPN----REILDHEKKRKIELQCLELQELLEEQ 79
+ + +++H+K+R+IE+Q EL++ LE++
Sbjct: 61 SKDNGLKKVLVEHDKRREIEVQVSELRDSLEDK 93
>sp|Q03375|CWC21_YEAST Pre-mRNA-splicing factor CWC21 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CWC21 PE=1 SV=1
Length = 135
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 19/21 (90%)
Query: 2 YNGIGLTTARGSGTNGYVQRN 22
YNGIGL +A+GS T+G+VQR+
Sbjct: 3 YNGIGLKSAKGSSTSGHVQRS 23
>sp|Q6BZ28|CCM1_DEBHA Mitochondrial group I intron splicing factor CCM1 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=CCM1 PE=3 SV=2
Length = 787
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 8 TTARGSGTNG--YVQRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHEKKRKI 65
T R SG G Y RN +VR K K L+ K A+NNK+ E +D + +RK+
Sbjct: 15 TIPRISGLQGSIYSSRNIFVVRSQKGKPTLRKSKGSNDGGAVNNKEKLSEWVDSDFERKM 74
Query: 66 ELQCLELQELLEEQGFNEIEVDAKVMAYRLHLNKNVEKINEPPL 109
+ Q +E + L+ E++ +A + +++EK+ E P+
Sbjct: 75 KQQEVEYERRLK-----ELKSLTASVARIIKKKEDIEKLQEIPM 113
>sp|Q1G9P9|IF2_LACDA Translation initiation factor IF-2 OS=Lactobacillus delbrueckii
subsp. bulgaricus (strain ATCC 11842 / DSM 20081)
GN=infB PE=3 SV=1
Length = 825
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 5 IGLTTARGSGTNGYVQRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHEKKRK 64
+G+ + SG +G ++ + S +RK ++KT K R + +N DH K+R+
Sbjct: 13 LGMDNKKTSGKSGKLKISVSAIRKGEKKTEGKRSNTRRRANNHSN--------DHSKRRR 64
Query: 65 IELQCLELQELLEEQGFNEIEVDAKVMAYRLHLNKNVEK 103
Q L L++L ++Q +E +D + A + K++ K
Sbjct: 65 PAAQDL-LKDLKQKQRADEARLDQESKAAKQEYKKSLNK 102
>sp|Q049V5|IF2_LACDB Translation initiation factor IF-2 OS=Lactobacillus delbrueckii
subsp. bulgaricus (strain ATCC BAA-365) GN=infB PE=3
SV=1
Length = 825
Score = 32.7 bits (73), Expect = 0.68, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 5 IGLTTARGSGTNGYVQRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHEKKRK 64
+G+ + SG +G ++ + S +RK ++KT K R + +N DH K+R+
Sbjct: 13 LGMDNKKTSGKSGKLKISVSAIRKGEKKTEGKRSNARRRANNHSN--------DHSKRRR 64
Query: 65 IELQCLELQELLEEQGFNEIEVDAKVMAYRLHLNKNVEK 103
Q L L++L ++Q +E +D + A + K++ K
Sbjct: 65 PAAQDL-LKDLKQKQRADEARLDQESKAAKQEYKKSLNK 102
>sp|Q7VGP1|RSMH_HELHP Ribosomal RNA small subunit methyltransferase H OS=Helicobacter
hepaticus (strain ATCC 51449 / 3B1) GN=rsmH PE=3 SV=1
Length = 317
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 26/123 (21%)
Query: 20 QRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNR------------------EILDHEK 61
QR +S V T + + T DL +N P R EI+ +E+
Sbjct: 111 QRGFSFVSSTLD-MRMDTRADLNATKVINTYSPIRLEEIFRIYGEVRQSKKLAEIIAYER 169
Query: 62 KRKIELQCLELQELLEEQGFNEIEVDAKVMAYR-LHLNKNVEKINEPPLDELGRVMDDTS 120
K+K CLEL L+E+ + +A++ L + N E L EL R++ +
Sbjct: 170 KKKPFSSCLELSTLIEQHFPRVGGIHPATLAFQALRIEVNDE------LGELKRLLHNIE 223
Query: 121 LKF 123
L F
Sbjct: 224 LAF 226
>sp|P28367|RF2_BACSU Peptide chain release factor 2 OS=Bacillus subtilis (strain 168)
GN=prfB PE=3 SV=2
Length = 366
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 5 IGLTTARGSGTNG-YVQRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHEKKR 63
I + T R SG G +V S VR T TN+ ER N ++ + + +R
Sbjct: 238 IKVDTYRASGAGGQHVNTTDSAVRITHLPTNVVVTCQTERSQIKNRERAMKMLKAKLYQR 297
Query: 64 KIELQCLELQELLEEQGFNEIEVDAKVMAYRLH 96
+IE Q EL E+ EQ EI +++ +Y H
Sbjct: 298 RIEEQQAELDEIRGEQ--KEIGWGSQIRSYVFH 328
>sp|A9WCR2|SYA_CHLAA Alanine--tRNA ligase OS=Chloroflexus aurantiacus (strain ATCC 29366
/ DSM 635 / J-10-fl) GN=alaS PE=3 SV=1
Length = 894
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 12 GSGTNGYVQRNWSLVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHEKKRKIELQCLE 71
G G G+V++ +R+ + N + + LER+DA+ L ++RK EL+ L
Sbjct: 717 GRGAEGWVEQQAQTLRELAARINTQPAQLLERIDAL---------LAEHRQRKQELEALR 767
Query: 72 LQELLEEQ 79
+L EQ
Sbjct: 768 -SKLAREQ 774
>sp|Q9D2V7|CORO7_MOUSE Coronin-7 OS=Mus musculus GN=Coro7 PE=2 SV=2
Length = 922
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 38 EKDLERMDAMNNKQPNREILDHEKKRKIELQCLELQELLEEQGFNEI-EVDAKVMAYRL 95
+K L D Q ++ HE R I L +QE L GFN++ E +AK+ RL
Sbjct: 189 DKQLRIFDPRARTQASQSTQAHENNRDIRLAWTGIQEHLVSTGFNQMREREAKLWDTRL 247
>sp|Q9WZB5|ISPF_THEMA 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thermotoga
maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM
10099) GN=ispF PE=3 SV=1
Length = 165
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 71 ELQELLEEQGFNEIEVDAKVMAYRLHLNKNVEKINE 106
E ++LEE+GF+ + VDA V+A + L+ EKI E
Sbjct: 83 ETVKILEERGFSVVNVDATVVASIVKLSPYREKIVE 118
>sp|Q07083|RPSC_MYXXA RNA polymerase sigma-C factor OS=Myxococcus xanthus GN=sigC PE=3
SV=1
Length = 295
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 15/96 (15%)
Query: 4 GIGLTTARGSGTNGYVQ----RNWSLVR--KTKEKTNL-----KTEKDLERMDAMNNKQP 52
GI L + Y+Q +NWSLV+ T+ + L +T ++LE+M A +
Sbjct: 94 GIRLISYAVWWIRAYIQNCILKNWSLVKLGTTQAQRRLFFSLARTRRELEKMGAGDANVV 153
Query: 53 NREILDHEKKRKIELQCLELQELLEEQGFNEIEVDA 88
N E E RK+ ++ E++E+ + G ++ +DA
Sbjct: 154 NAE----EIARKLNVKASEVREMEQRMGGRDLSLDA 185
>sp|B9KAZ0|ISPF_THENN 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thermotoga
neapolitana (strain ATCC 49049 / DSM 4359 / NS-E)
GN=ispF PE=3 SV=1
Length = 165
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 71 ELQELLEEQGFNEIEVDAKVMAYRLHLNKNVEKINE 106
E ++LEE+GF+ + VDA V+A + L+ EKI E
Sbjct: 83 ETVKILEERGFSVVNVDATVVASIVKLSPYREKILE 118
>sp|Q8CHR9|PIHD2_MOUSE PIH1 domain-containing protein 2 OS=Mus musculus GN=Pih1d2 PE=2
SV=1
Length = 315
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Query: 32 KTNLKTEKDLERMDAMNNKQPNR--EILDHEKKRKIELQCLELQELLEEQGFNEIEVDAK 89
K +TE L R+ + +PN E+L +K+ + +CL +EE +EI+V+ K
Sbjct: 177 KAMTRTENTLARIRSSTVSEPNHLPEVLLTKKQASAKGRCL-----IEEISSSEIQVEVK 231
Query: 90 VMAYRLHLNKNVEKINEPPL 109
AY L K V+ NE PL
Sbjct: 232 KPAYEL---KVVKDRNEKPL 248
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,475,555
Number of Sequences: 539616
Number of extensions: 2303678
Number of successful extensions: 7794
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 131
Number of HSP's that attempted gapping in prelim test: 7667
Number of HSP's gapped (non-prelim): 265
length of query: 145
length of database: 191,569,459
effective HSP length: 106
effective length of query: 39
effective length of database: 134,370,163
effective search space: 5240436357
effective search space used: 5240436357
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)