Query psy1931
Match_columns 145
No_of_seqs 105 out of 198
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 19:58:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1931.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1931hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e62_A Protein AT5G25060; CWF2 99.5 6E-14 2.1E-18 94.9 5.6 44 57-100 13-57 (61)
2 3lof_A Heat shock 70 kDa prote 75.0 9.7 0.00033 26.3 6.4 44 56-99 33-77 (113)
3 2eq7_C 2-oxoglutarate dehydrog 67.5 2.5 8.6E-05 24.5 1.6 19 3-21 13-31 (40)
4 3ff5_A PEX14P, peroxisomal bio 67.3 7.4 0.00025 25.2 3.9 19 73-91 34-52 (54)
5 2p32_A Heat shock 70 kDa prote 67.0 19 0.00064 25.2 6.5 47 53-99 39-86 (120)
6 2w84_A Peroxisomal membrane pr 62.6 9.5 0.00032 25.9 3.9 20 73-92 39-58 (70)
7 3dfg_A Xcrecx, regulatory prot 61.8 9 0.00031 28.5 4.1 25 70-94 35-59 (162)
8 2eq9_C Pyruvate dehydrogenase 60.8 3 0.0001 24.2 1.0 19 3-21 14-32 (41)
9 2eq8_C Pyruvate dehydrogenase 60.4 2.3 7.9E-05 24.6 0.5 19 3-21 13-31 (40)
10 1bal_A Dihydrolipoamide succin 58.5 4.3 0.00015 25.0 1.5 19 3-21 23-41 (51)
11 1ud0_A HSC70, 70 kDa heat-shoc 55.4 11 0.00039 25.8 3.5 45 55-99 27-72 (113)
12 1w85_I Dihydrolipoyllysine-res 52.1 6.2 0.00021 23.9 1.5 19 3-21 20-38 (49)
13 3d5l_A Regulatory protein RECX 51.4 17 0.00058 28.3 4.3 24 71-94 80-103 (221)
14 3nr7_A DNA-binding protein H-N 50.3 15 0.00052 25.5 3.4 23 66-88 58-80 (86)
15 4e81_A Chaperone protein DNAK; 48.1 27 0.00093 27.2 5.0 39 57-97 169-207 (219)
16 3e3v_A Regulatory protein RECX 43.1 12 0.00042 28.2 2.2 24 71-94 37-60 (177)
17 2zzd_B Thiocyanate hydrolase s 38.6 55 0.0019 25.0 5.2 35 66-100 110-145 (157)
18 2f60_K Pyruvate dehydrogenase 37.2 11 0.00038 24.5 0.9 19 3-21 23-41 (64)
19 3v2d_2 50S ribosomal protein L 36.7 41 0.0014 22.3 3.8 24 80-103 15-38 (72)
20 1w4i_A Pyruvate dehydrogenase 36.6 9.1 0.00031 24.6 0.5 19 3-21 18-36 (62)
21 2ozl_A PDHE1-A type I, pyruvat 35.6 49 0.0017 27.7 4.9 35 69-103 292-327 (365)
22 3rnm_E Lipoamide acyltransfera 35.4 12 0.0004 24.1 0.8 19 3-21 21-39 (58)
23 1p4w_A RCSB; solution structur 34.0 49 0.0017 22.5 3.9 11 79-89 48-58 (99)
24 1u00_A HSC66, chaperone protei 33.8 57 0.0019 25.2 4.7 39 57-97 166-204 (227)
25 1w85_A Pyruvate dehydrogenase 33.7 73 0.0025 26.6 5.7 36 69-104 296-332 (368)
26 3bhp_A UPF0291 protein YNZC; N 32.8 1E+02 0.0035 20.1 5.1 32 68-100 9-40 (60)
27 2jvd_A UPF0291 protein YNZC; s 30.0 1.1E+02 0.0037 19.7 4.8 32 68-100 9-40 (54)
28 1zrj_A E1B-55KDA-associated pr 29.5 21 0.00073 22.4 1.3 16 67-82 13-28 (50)
29 2zjr_V 50S ribosomal protein L 29.0 43 0.0015 21.8 2.8 23 79-101 7-29 (67)
30 1r73_A TM1492, 50S ribosomal p 27.9 41 0.0014 21.9 2.6 22 80-101 8-29 (66)
31 1uo4_A General control protein 27.8 98 0.0034 18.2 4.1 29 63-98 4-32 (34)
32 3fjv_A Uncharacterized novel p 26.9 35 0.0012 27.0 2.4 40 54-93 24-77 (194)
33 3c1d_A Protein ORAA, regulator 26.8 61 0.0021 23.7 3.6 11 71-81 51-61 (159)
34 1kd8_B GABH BLL, GCN4 acid bas 26.6 1.1E+02 0.0037 18.3 4.7 29 63-98 4-32 (36)
35 3hho_A CO-chaperone protein HS 26.5 71 0.0024 23.9 4.0 37 65-101 94-136 (174)
36 3j20_R 30S ribosomal protein S 26.0 28 0.00096 25.4 1.6 20 1-24 2-22 (113)
37 1umd_A E1-alpha, 2-OXO acid de 26.0 1.3E+02 0.0043 24.8 5.8 35 69-103 297-332 (367)
38 3j21_W 50S ribosomal protein L 25.7 47 0.0016 22.0 2.6 24 80-103 8-31 (72)
39 1zy8_K Pyruvate dehydrogenase 25.6 28 0.00096 27.6 1.7 19 3-21 142-160 (229)
40 3r8s_Y 50S ribosomal protein L 25.5 40 0.0014 21.8 2.1 24 80-103 8-31 (63)
41 1vq8_V 50S ribosomal protein L 24.5 51 0.0018 21.7 2.6 22 80-101 11-32 (71)
42 4fm4_A NitrIle hydratase alpha 24.4 68 0.0023 25.8 3.7 30 63-92 7-37 (209)
43 3uo3_A J-type CO-chaperone JAC 24.2 1.3E+02 0.0046 22.7 5.3 36 64-100 102-140 (181)
44 2kvu_A MKL/myocardin-like prot 23.8 43 0.0015 22.8 2.1 16 67-82 29-44 (75)
45 2do1_A Nuclear protein HCC-1; 23.3 71 0.0024 20.3 3.0 16 67-82 13-28 (55)
46 1h1j_S THO1 protein; SAP domai 22.6 33 0.0011 21.5 1.2 16 67-82 8-23 (51)
47 1ex7_A Guanylate kinase; subst 22.1 1.2E+02 0.004 22.7 4.5 30 70-99 126-156 (186)
48 2coo_A Lipoamide acyltransfera 22.0 24 0.00081 23.3 0.5 19 3-21 29-47 (70)
49 3lay_A Zinc resistance-associa 21.7 1.6E+02 0.0053 22.6 5.2 40 62-101 91-133 (175)
50 2zkr_v 60S ribosomal protein L 21.6 79 0.0027 23.2 3.3 22 79-100 10-31 (123)
51 1itu_A Renal dipeptidase; glyc 21.5 1.7E+02 0.0058 24.7 5.8 39 69-107 305-343 (369)
52 3mlg_A Putative uncharacterize 21.4 1E+02 0.0035 24.4 4.1 48 70-117 42-105 (189)
53 3d2f_A Heat shock protein homo 21.4 94 0.0032 27.9 4.4 43 54-96 572-616 (675)
54 1qs0_A 2-oxoisovalerate dehydr 21.2 2.2E+02 0.0074 24.2 6.5 35 69-103 335-370 (407)
55 1avo_A 11S regulator; proteaso 21.1 79 0.0027 20.3 2.9 19 85-103 6-24 (60)
56 4grd_A N5-CAIR mutase, phospho 20.8 81 0.0028 24.6 3.4 28 80-107 143-170 (173)
57 4b4k_A N5-carboxyaminoimidazol 20.8 65 0.0022 25.3 2.9 27 80-106 153-179 (181)
58 2bze_A KIAA0252 protein; human 20.7 1.1E+02 0.0037 22.7 4.0 31 66-96 118-151 (153)
59 2hep_A UPF0291 protein YNZC; S 20.4 1.9E+02 0.0064 20.1 4.9 63 68-133 9-77 (85)
60 3u5e_h 60S ribosomal protein L 20.4 85 0.0029 22.9 3.3 25 79-103 10-34 (120)
No 1
>2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Arabidopsis thaliana}
Probab=99.46 E-value=6e-14 Score=94.94 Aligned_cols=44 Identities=36% Similarity=0.539 Sum_probs=41.1
Q ss_pred HhHHhhhHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHh
Q psy1931 57 LDHEKKRKIELQCLELQELLEEQGFN-EIEVDAKVMAYRLHLNKN 100 (145)
Q Consensus 57 leHerKR~IEvk~~ELrd~LEe~G~~-eeEIe~kv~~lR~~Ll~e 100 (145)
-.|.++|+|||||++|||+||++|+. +++|++||+.+|++|+++
T Consensus 13 e~r~klR~IEvk~me~rD~LEeqG~~~~~eI~~kV~~~RkkL~~~ 57 (61)
T 2e62_A 13 EQRQKRRRIEVALIEYRETLEEQGMKNPEEIERKVEINRKRLEVD 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999975 699999999999999976
No 2
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=75.04 E-value=9.7 Score=26.32 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=35.8
Q ss_pred HHhHHhhhHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHH
Q psy1931 56 ILDHEKKRKIELQCLELQELLEEQ-GFNEIEVDAKVMAYRLHLNK 99 (145)
Q Consensus 56 IleHerKR~IEvk~~ELrd~LEe~-G~~eeEIe~kv~~lR~~Ll~ 99 (145)
-+.=+.|-+|+-+|.++++.|+.. ..+.++|+.++++|.+.+..
T Consensus 33 kl~~eek~~i~~~i~e~~~wL~~~~~a~~e~i~~k~~eL~~~~~~ 77 (113)
T 3lof_A 33 KISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNP 77 (113)
T ss_dssp TBCHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHH
Confidence 355567889999999999999884 25689999999999876544
No 3
>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus}
Probab=67.52 E-value=2.5 Score=24.45 Aligned_cols=19 Identities=21% Similarity=0.588 Sum_probs=16.6
Q ss_pred CCCCCCCCCcCCCcccccc
Q psy1931 3 NGIGLTTARGSGTNGYVQR 21 (145)
Q Consensus 3 NGIGL~TaRGSGTSGyVQr 21 (145)
+||-|..+.|||..|-|.+
T Consensus 13 ~gidl~~v~gtG~~gri~k 31 (40)
T 2eq7_C 13 KGVSPAEVQGTGLGGRILK 31 (40)
T ss_dssp TTCCTTTSCCCSSSSCCCH
T ss_pred hCCChhhcCCCCCCCcccH
Confidence 6899999999999997754
No 4
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=67.32 E-value=7.4 Score=25.16 Aligned_cols=19 Identities=21% Similarity=0.517 Sum_probs=15.6
Q ss_pred HHHHHHcCCCHHHHHHHHH
Q psy1931 73 QELLEEQGFNEIEVDAKVM 91 (145)
Q Consensus 73 rd~LEe~G~~eeEIe~kv~ 91 (145)
..-|+..|++++||++-+.
T Consensus 34 ~~FL~sKGLt~~EI~~Al~ 52 (54)
T 3ff5_A 34 RAFLKKKGLTDEEIDLAFQ 52 (54)
T ss_dssp HHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 3567899999999998764
No 5
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=67.00 E-value=19 Score=25.25 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=37.6
Q ss_pred ChhHHhHHhhhHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHH
Q psy1931 53 NREILDHEKKRKIELQCLELQELLEEQ-GFNEIEVDAKVMAYRLHLNK 99 (145)
Q Consensus 53 n~eIleHerKR~IEvk~~ELrd~LEe~-G~~eeEIe~kv~~lR~~Ll~ 99 (145)
....+.=+.|-+|+-.|.+|++.|+.. ..+.++|+.++++|.+.+..
T Consensus 39 ~~dkl~~eek~~I~~~i~el~~~L~~~~~ad~e~ik~k~~eL~~~~~~ 86 (120)
T 2p32_A 39 LKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANP 86 (120)
T ss_dssp TGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHH
Confidence 345677888999999999999999853 24779999999999876543
No 6
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=62.64 E-value=9.5 Score=25.94 Aligned_cols=20 Identities=20% Similarity=0.496 Sum_probs=16.4
Q ss_pred HHHHHHcCCCHHHHHHHHHH
Q psy1931 73 QELLEEQGFNEIEVDAKVMA 92 (145)
Q Consensus 73 rd~LEe~G~~eeEIe~kv~~ 92 (145)
+.-|+..|++++||++-+..
T Consensus 39 ~~FL~sKGLt~eEI~~Al~r 58 (70)
T 2w84_A 39 RAFLKKKGLTDEEIDMAFQQ 58 (70)
T ss_dssp HHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHH
Confidence 35678999999999987654
No 7
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=61.79 E-value=9 Score=28.48 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=20.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH
Q psy1931 70 LELQELLEEQGFNEIEVDAKVMAYR 94 (145)
Q Consensus 70 ~ELrd~LEe~G~~eeEIe~kv~~lR 94 (145)
.||+++|...|++++.|++-++.|.
T Consensus 35 ~EL~~KL~~kg~~~e~Ie~vl~~l~ 59 (162)
T 3dfg_A 35 KELNRKLQARGIEPEAAQAAVERLA 59 (162)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4788888888999988888888774
No 8
>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus}
Probab=60.84 E-value=3 Score=24.25 Aligned_cols=19 Identities=37% Similarity=0.492 Sum_probs=16.5
Q ss_pred CCCCCCCCCcCCCcccccc
Q psy1931 3 NGIGLTTARGSGTNGYVQR 21 (145)
Q Consensus 3 NGIGL~TaRGSGTSGyVQr 21 (145)
+||-|..+.|||..|-|.+
T Consensus 14 ~gidl~~v~gtG~~gri~k 32 (41)
T 2eq9_C 14 LGIPIEEVPGSGPLGRVRV 32 (41)
T ss_dssp TTCCGGGSCCCSTTCCBCH
T ss_pred cCCChhhcCCCCCCCcccH
Confidence 6899999999999997754
No 9
>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus}
Probab=60.39 E-value=2.3 Score=24.63 Aligned_cols=19 Identities=37% Similarity=0.667 Sum_probs=16.3
Q ss_pred CCCCCCCCCcCCCcccccc
Q psy1931 3 NGIGLTTARGSGTNGYVQR 21 (145)
Q Consensus 3 NGIGL~TaRGSGTSGyVQr 21 (145)
+||-|..+.|||.+|-|.+
T Consensus 13 ~gidl~~v~gtG~~gri~k 31 (40)
T 2eq8_C 13 LGVDLTRLRGTGLAGRITE 31 (40)
T ss_dssp HTCCGGGCCCCSTTSCCCH
T ss_pred hCCChhhcCCCCCCCceeH
Confidence 5899999999999997754
No 10
>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A
Probab=58.47 E-value=4.3 Score=25.04 Aligned_cols=19 Identities=21% Similarity=0.592 Sum_probs=16.8
Q ss_pred CCCCCCCCCcCCCcccccc
Q psy1931 3 NGIGLTTARGSGTNGYVQR 21 (145)
Q Consensus 3 NGIGL~TaRGSGTSGyVQr 21 (145)
+||-|..+.|||..|-|.+
T Consensus 23 ~gidl~~V~gtG~~GrI~k 41 (51)
T 1bal_A 23 HNLDASAIKGTGVGGRLTR 41 (51)
T ss_dssp TTCCTTSSCCCSTTSCCCH
T ss_pred cCCCccccCCCCCCCcccH
Confidence 6899999999999998754
No 11
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=55.42 E-value=11 Score=25.76 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=34.2
Q ss_pred hHHhHHhhhHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHH
Q psy1931 55 EILDHEKKRKIELQCLELQELLEEQ-GFNEIEVDAKVMAYRLHLNK 99 (145)
Q Consensus 55 eIleHerKR~IEvk~~ELrd~LEe~-G~~eeEIe~kv~~lR~~Ll~ 99 (145)
..+.-+.|-+|+-.|.++++.|++. ..+.++|+.++++|.+.+..
T Consensus 27 ~kl~~~ek~~i~~~i~~l~~~L~~~~~ad~~~i~~~~~~L~~~~~~ 72 (113)
T 1ud0_A 27 GKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNP 72 (113)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHH
Confidence 3466778889999999999999742 12557899999998866443
No 12
>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*
Probab=52.07 E-value=6.2 Score=23.95 Aligned_cols=19 Identities=32% Similarity=0.726 Sum_probs=16.4
Q ss_pred CCCCCCCCCcCCCcccccc
Q psy1931 3 NGIGLTTARGSGTNGYVQR 21 (145)
Q Consensus 3 NGIGL~TaRGSGTSGyVQr 21 (145)
+||-|..+.|||..|-|.+
T Consensus 20 ~gidl~~v~gtG~~Gri~k 38 (49)
T 1w85_I 20 KGVDIRLVQGTGKNGRVLK 38 (49)
T ss_dssp TTCCTTTSCCCSGGGCCCH
T ss_pred cCCCccccCCCCCCCcccH
Confidence 6899999999999997653
No 13
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=51.45 E-value=17 Score=28.28 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=20.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Q psy1931 71 ELQELLEEQGFNEIEVDAKVMAYR 94 (145)
Q Consensus 71 ELrd~LEe~G~~eeEIe~kv~~lR 94 (145)
||+++|...|+++++|++-++.|.
T Consensus 80 EL~~KL~~kg~~~e~i~~vl~~L~ 103 (221)
T 3d5l_A 80 DIVKKLKEIDTPEEFVEPILKKLR 103 (221)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHH
Confidence 889999999999999998887765
No 14
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=50.27 E-value=15 Score=25.45 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHH
Q psy1931 66 ELQCLELQELLEEQGFNEIEVDA 88 (145)
Q Consensus 66 Evk~~ELrd~LEe~G~~eeEIe~ 88 (145)
+-|+.++++.|++.|+|.+|+-.
T Consensus 58 ~~Kl~~~~e~l~~~GI~~eeL~~ 80 (86)
T 3nr7_A 58 TRKLQQYREMLIADGIDPNELLN 80 (86)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHh
Confidence 45788888899999998888753
No 15
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=48.13 E-value=27 Score=27.20 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=26.0
Q ss_pred HhHHhhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy1931 57 LDHEKKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHL 97 (145)
Q Consensus 57 leHerKR~IEvk~~ELrd~LEe~G~~eeEIe~kv~~lR~~L 97 (145)
+.-+.|.+|+-.|.++++.|++. +.++|+++.++|.+..
T Consensus 169 l~~~~k~~i~~~l~~~~~~L~~~--~~~~i~~~~~~L~~~~ 207 (219)
T 4e81_A 169 LPADDKTAIESALTALETALKGE--DKAAIEAKMQELAQVS 207 (219)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHSS--CHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHH
Confidence 33456667777777777777665 5677777777766543
No 16
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=43.14 E-value=12 Score=28.20 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=16.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Q psy1931 71 ELQELLEEQGFNEIEVDAKVMAYR 94 (145)
Q Consensus 71 ELrd~LEe~G~~eeEIe~kv~~lR 94 (145)
||+++|...|++++.|++-|+.|.
T Consensus 37 EL~~KL~~kg~~~~~ie~vl~~L~ 60 (177)
T 3e3v_A 37 EVEDKLRSLDIHEDYISEIINKLI 60 (177)
T ss_dssp HHHTTSGGGTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Confidence 666666666777777776666554
No 17
>2zzd_B Thiocyanate hydrolase subunit beta; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_B 2dxb_B 2dd5_B* 2dxc_B*
Probab=38.59 E-value=55 Score=25.05 Aligned_cols=35 Identities=14% Similarity=0.180 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHh
Q psy1931 66 ELQCLELQELLEEQG-FNEIEVDAKVMAYRLHLNKN 100 (145)
Q Consensus 66 Evk~~ELrd~LEe~G-~~eeEIe~kv~~lR~~Ll~e 100 (145)
|.-+.-|..-|-+.| ++.+||+++..+.|+.+-..
T Consensus 110 e~WL~ALe~lLvekGvit~~EL~ar~aEv~ar~~~~ 145 (157)
T 2zzd_B 110 GRWLLTAARILVDKQFVTLTELHNKIVEMRERVASG 145 (157)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcc
Confidence 344567778889999 69999999999999998775
No 18
>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K
Probab=37.24 E-value=11 Score=24.53 Aligned_cols=19 Identities=11% Similarity=0.401 Sum_probs=16.1
Q ss_pred CCCCCCCCCcCCCcccccc
Q psy1931 3 NGIGLTTARGSGTNGYVQR 21 (145)
Q Consensus 3 NGIGL~TaRGSGTSGyVQr 21 (145)
+||-|.++.|||..|-|.+
T Consensus 23 ~gidl~~V~GTG~~GRItk 41 (64)
T 2f60_K 23 HSLDASQGTATGPRGIFTK 41 (64)
T ss_dssp TTCCGGGSCCCSGGGCBCH
T ss_pred cCCChhhcCCCCCCCcccH
Confidence 6899999999999987653
No 19
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=36.68 E-value=41 Score=22.34 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhh
Q psy1931 80 GFNEIEVDAKVMAYRLHLNKNVEK 103 (145)
Q Consensus 80 G~~eeEIe~kv~~lR~~Ll~e~~~ 103 (145)
+++.+|+.+++.+++.+|.+-..+
T Consensus 15 ~~s~eEL~~~L~elk~ELf~LR~q 38 (72)
T 3v2d_2 15 KLSPVELEKLVREKKRELMELRFQ 38 (72)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999886433
No 20
>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A
Probab=36.62 E-value=9.1 Score=24.64 Aligned_cols=19 Identities=32% Similarity=0.665 Sum_probs=16.5
Q ss_pred CCCCCCCCCcCCCcccccc
Q psy1931 3 NGIGLTTARGSGTNGYVQR 21 (145)
Q Consensus 3 NGIGL~TaRGSGTSGyVQr 21 (145)
+||-|..+.|||.+|-|.+
T Consensus 18 ~gidl~~V~gtG~~GrItk 36 (62)
T 1w4i_A 18 LGIDLSKVKGTGPGGVITV 36 (62)
T ss_dssp HTCCGGGSCCCSTTSEECH
T ss_pred hCCChhhcCCCCCCCcccH
Confidence 5899999999999998754
No 21
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=35.64 E-value=49 Score=27.73 Aligned_cols=35 Identities=9% Similarity=0.079 Sum_probs=28.6
Q ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhhh
Q psy1931 69 CLELQELLEEQG-FNEIEVDAKVMAYRLHLNKNVEK 103 (145)
Q Consensus 69 ~~ELrd~LEe~G-~~eeEIe~kv~~lR~~Ll~e~~~ 103 (145)
+.-|++.|.++| ++++++++-.++.++.+.+....
T Consensus 292 i~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~ 327 (365)
T 2ozl_A 292 IMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQF 327 (365)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999 69999999999999988876544
No 22
>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A
Probab=35.41 E-value=12 Score=24.08 Aligned_cols=19 Identities=37% Similarity=0.655 Sum_probs=16.2
Q ss_pred CCCCCCCCCcCCCcccccc
Q psy1931 3 NGIGLTTARGSGTNGYVQR 21 (145)
Q Consensus 3 NGIGL~TaRGSGTSGyVQr 21 (145)
+||-|..+.|||-.|-|.+
T Consensus 21 ~gIdl~~V~GTG~~GRItk 39 (58)
T 3rnm_E 21 NNIKLSEVVGSGKDGRILK 39 (58)
T ss_dssp TTCCGGGCCCCSGGGCCCH
T ss_pred cCCCHHHCCCCCCCCceeH
Confidence 6899999999999987754
No 23
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=34.00 E-value=49 Score=22.52 Aligned_cols=11 Identities=36% Similarity=0.576 Sum_probs=5.6
Q ss_pred cCCCHHHHHHH
Q psy1931 79 QGFNEIEVDAK 89 (145)
Q Consensus 79 ~G~~eeEIe~k 89 (145)
+|++..||-+.
T Consensus 48 ~G~s~~EIA~~ 58 (99)
T 1p4w_A 48 EGFLVTEIAKK 58 (99)
T ss_dssp HTCCHHHHHHH
T ss_pred cCCCHHHHHHH
Confidence 35555555543
No 24
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=33.81 E-value=57 Score=25.24 Aligned_cols=39 Identities=10% Similarity=0.121 Sum_probs=25.5
Q ss_pred HhHHhhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy1931 57 LDHEKKRKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHL 97 (145)
Q Consensus 57 leHerKR~IEvk~~ELrd~LEe~G~~eeEIe~kv~~lR~~L 97 (145)
+.-+.|.+|+-.|.++++.|+. -+.++|++++++|.+.+
T Consensus 166 ~~~~~k~~i~~~l~~~~~wl~~--~d~~~~~~~~~~L~~~~ 204 (227)
T 1u00_A 166 LSAAERQVIDDAAAHLSEVAQG--DDVDAIEQAIKNVDKQT 204 (227)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHH
Confidence 3455666777777777777763 35677777777776543
No 25
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=33.66 E-value=73 Score=26.58 Aligned_cols=36 Identities=17% Similarity=0.377 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhhhc
Q psy1931 69 CLELQELLEEQG-FNEIEVDAKVMAYRLHLNKNVEKI 104 (145)
Q Consensus 69 ~~ELrd~LEe~G-~~eeEIe~kv~~lR~~Ll~e~~~~ 104 (145)
+.-|+..|.++| ++++++++-.++.++.+.+..+..
T Consensus 296 i~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a 332 (368)
T 1w85_A 296 LVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKA 332 (368)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 446889999999 699999999999999888765443
No 26
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=32.75 E-value=1e+02 Score=20.15 Aligned_cols=32 Identities=19% Similarity=0.071 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy1931 68 QCLELQELLEEQGFNEIEVDAKVMAYRLHLNKN 100 (145)
Q Consensus 68 k~~ELrd~LEe~G~~eeEIe~kv~~lR~~Ll~e 100 (145)
++-||--+=.+.|++++|..++ ..||+..++.
T Consensus 9 RINeLakK~K~~gLT~eEk~EQ-~~LR~eYl~~ 40 (60)
T 3bhp_A 9 RINELAAKAKAGVITEEEKAEQ-QKLRQEYLKG 40 (60)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHH-HHHHHHHHHH
Confidence 5667777777899999998876 5678777765
No 27
>2jvd_A UPF0291 protein YNZC; solution structure, construct optimization, cytoplasm, structural genomics, unknown function, PSI-2; NMR {Bacillus subtilis}
Probab=29.98 E-value=1.1e+02 Score=19.66 Aligned_cols=32 Identities=19% Similarity=0.071 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q psy1931 68 QCLELQELLEEQGFNEIEVDAKVMAYRLHLNKN 100 (145)
Q Consensus 68 k~~ELrd~LEe~G~~eeEIe~kv~~lR~~Ll~e 100 (145)
++-||--+=.+.|++++|..++ ..||+..++.
T Consensus 9 RINeLakK~K~~gLT~eEk~EQ-~~LR~eYl~~ 40 (54)
T 2jvd_A 9 RINELAAKAKAGVITEEEKAEQ-QKLRQEYLKG 40 (54)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHH-HHHHHHHHTT
T ss_pred HHHHHHHHHhccCCCHHHHHHH-HHHHHHHHHH
Confidence 5667777777899999998876 5789888875
No 28
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=29.47 E-value=21 Score=22.38 Aligned_cols=16 Identities=38% Similarity=0.642 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHcCCC
Q psy1931 67 LQCLELQELLEEQGFN 82 (145)
Q Consensus 67 vk~~ELrd~LEe~G~~ 82 (145)
++|.||+++|...|++
T Consensus 13 lkV~eLK~eLk~RgL~ 28 (50)
T 1zrj_A 13 LKVNELREELQRRGLD 28 (50)
T ss_dssp SCHHHHHHHHHHTTCC
T ss_pred CcHHHHHHHHHHcCCC
Confidence 6799999999999974
No 29
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=28.95 E-value=43 Score=21.84 Aligned_cols=23 Identities=9% Similarity=0.104 Sum_probs=20.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhh
Q psy1931 79 QGFNEIEVDAKVMAYRLHLNKNV 101 (145)
Q Consensus 79 ~G~~eeEIe~kv~~lR~~Ll~e~ 101 (145)
.+++.+|+.+++.+++.+|.+-.
T Consensus 7 r~~s~~EL~~~l~elk~ELf~LR 29 (67)
T 2zjr_V 7 RNLQATDFAKEIDARKKELMELR 29 (67)
T ss_dssp TTSCHHHHHHHHHTHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999998864
No 30
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=27.89 E-value=41 Score=21.87 Aligned_cols=22 Identities=9% Similarity=0.107 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhh
Q psy1931 80 GFNEIEVDAKVMAYRLHLNKNV 101 (145)
Q Consensus 80 G~~eeEIe~kv~~lR~~Ll~e~ 101 (145)
+++.+|+.+++.+++.+|.+-.
T Consensus 8 ~~s~~EL~~~l~elk~ELf~LR 29 (66)
T 1r73_A 8 NYTDEELKNLLEEKKRQLMELR 29 (66)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999998864
No 31
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=27.76 E-value=98 Score=18.25 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy1931 63 RKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHLN 98 (145)
Q Consensus 63 R~IEvk~~ELrd~LEe~G~~eeEIe~kv~~lR~~Ll 98 (145)
-|+|-||.+|-.+. .+++..|..|+.-|.
T Consensus 4 ~QLEdKVEeLl~~n-------~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 4 KQIEDKGEEILSKL-------YHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhh-------HHHHHHHHHHHHHHc
Confidence 36777777776543 457788888876553
No 32
>3fjv_A Uncharacterized novel protein; YP_111841.1, novel protein of unknown function; HET: MSE; 1.90A {Burkholderia pseudomallei K96243}
Probab=26.94 E-value=35 Score=27.03 Aligned_cols=40 Identities=23% Similarity=0.484 Sum_probs=32.0
Q ss_pred hhHHhHHhhhHHHH-------------HHHHHHHHHHHcCC-CHHHHHHHHHHH
Q psy1931 54 REILDHEKKRKIEL-------------QCLELQELLEEQGF-NEIEVDAKVMAY 93 (145)
Q Consensus 54 ~eIleHerKR~IEv-------------k~~ELrd~LEe~G~-~eeEIe~kv~~l 93 (145)
+.|+.|.+.|.|+| -..+-+|+|.-+++ ++++|...++.+
T Consensus 24 ~~v~~~Kk~RrV~lG~~~tl~FEn~~Tv~~QIQEMlriEri~~~~~I~~Ei~aY 77 (194)
T 3fjv_A 24 ARVIAHKKRRAVSIGNHLRLLFEDETTIRYQIHEMLHIEKIFDEDGIQAELDAY 77 (194)
T ss_dssp HHHHHHHTTTEEEETTTEEEEECCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred HHHHHHhhccEeecCCcEEEEEeChHHHHHHHHHHHHHhccCCHHHHHHHHHHh
Confidence 47999999999987 23466678877765 889999999876
No 33
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.79 E-value=61 Score=23.66 Aligned_cols=11 Identities=18% Similarity=0.456 Sum_probs=5.1
Q ss_pred HHHHHHHHcCC
Q psy1931 71 ELQELLEEQGF 81 (145)
Q Consensus 71 ELrd~LEe~G~ 81 (145)
+.-+.|++.|+
T Consensus 51 ~vl~~l~~~g~ 61 (159)
T 3c1d_A 51 RVIAWCHEHGY 61 (159)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHcCC
Confidence 33344555553
No 34
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=26.57 E-value=1.1e+02 Score=18.29 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy1931 63 RKIELQCLELQELLEEQGFNEIEVDAKVMAYRLHLN 98 (145)
Q Consensus 63 R~IEvk~~ELrd~LEe~G~~eeEIe~kv~~lR~~Ll 98 (145)
-|+|-||.||-.+. .+++.+|..||..|-
T Consensus 4 nQLE~KVEeLl~~~-------~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 4 KQLKAKVEELKSKL-------WHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh-------HHHHHHHHHHHHHhc
Confidence 46777777776554 357788888887764
No 35
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=26.52 E-value=71 Score=23.90 Aligned_cols=37 Identities=27% Similarity=0.329 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHcCC--C----HHHHHHHHHHHHHHHHHhh
Q psy1931 65 IELQCLELQELLEEQGF--N----EIEVDAKVMAYRLHLNKNV 101 (145)
Q Consensus 65 IEvk~~ELrd~LEe~G~--~----eeEIe~kv~~lR~~Ll~e~ 101 (145)
+=..+||+++.|++..- + -++|..++....+.+.++.
T Consensus 94 fLme~me~rE~le~~~~~~d~~~~l~~l~~~~~~~~~~~~~~l 136 (174)
T 3hho_A 94 FLMEQMELREELESVTACADPEAALVAFDTKVTAMQRHYLAQL 136 (174)
T ss_dssp HHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999998542 2 2345556666655555554
No 36
>3j20_R 30S ribosomal protein S17P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.04 E-value=28 Score=25.40 Aligned_cols=20 Identities=10% Similarity=0.182 Sum_probs=13.6
Q ss_pred CCC-CCCCCCCCcCCCccccccccc
Q psy1931 1 MYN-GIGLTTARGSGTNGYVQRNWS 24 (145)
Q Consensus 1 MYN-GIGL~TaRGSGTSGyVQrNls 24 (145)
|.| |+|.+||.|. |+-.+--
T Consensus 2 m~~igl~~~~p~~~----~~d~~cP 22 (113)
T 3j20_R 2 MRDIGLRVQPPAEK----CDDPKCP 22 (113)
T ss_dssp CCCCCTTCCCCSSC----CCCSSST
T ss_pred chhcCCCCCCCccc----ccCCCCC
Confidence 667 8888999874 5544433
No 37
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=26.03 E-value=1.3e+02 Score=24.85 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhhh
Q psy1931 69 CLELQELLEEQG-FNEIEVDAKVMAYRLHLNKNVEK 103 (145)
Q Consensus 69 ~~ELrd~LEe~G-~~eeEIe~kv~~lR~~Ll~e~~~ 103 (145)
+.-|++.|.++| +++++|++--++.++.+.+..+.
T Consensus 297 i~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~ 332 (367)
T 1umd_A 297 IPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKE 332 (367)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 446789999999 69999988888888887765433
No 38
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.65 E-value=47 Score=22.03 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhh
Q psy1931 80 GFNEIEVDAKVMAYRLHLNKNVEK 103 (145)
Q Consensus 80 G~~eeEIe~kv~~lR~~Ll~e~~~ 103 (145)
+++.+|+.+++.+++.+|.+-..+
T Consensus 8 ~~s~~EL~~~L~elk~ELf~LR~q 31 (72)
T 3j21_W 8 EMSIEEIDAKIRELRLQLAKERGL 31 (72)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999885433
No 39
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=25.63 E-value=28 Score=27.57 Aligned_cols=19 Identities=11% Similarity=0.401 Sum_probs=17.1
Q ss_pred CCCCCCCCCcCCCcccccc
Q psy1931 3 NGIGLTTARGSGTNGYVQR 21 (145)
Q Consensus 3 NGIGL~TaRGSGTSGyVQr 21 (145)
+||-|.++.|||-.|-|.+
T Consensus 142 ~gVDL~~V~GTGp~GRItk 160 (229)
T 1zy8_K 142 HSLDASQGTATGPRGIFTK 160 (229)
T ss_dssp TTCCSSSSCCCSTTSCBCH
T ss_pred cCCCccccCCCCCCCceeh
Confidence 6999999999999998765
No 40
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=25.51 E-value=40 Score=21.77 Aligned_cols=24 Identities=4% Similarity=-0.101 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhh
Q psy1931 80 GFNEIEVDAKVMAYRLHLNKNVEK 103 (145)
Q Consensus 80 G~~eeEIe~kv~~lR~~Ll~e~~~ 103 (145)
+++.+|+.+++.+++.+|.+-..+
T Consensus 8 ~~s~~EL~~~l~elk~Elf~LR~q 31 (63)
T 3r8s_Y 8 EKSVEELNTELLNLLREQFNLRMQ 31 (63)
T ss_dssp SCHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999886433
No 41
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=24.46 E-value=51 Score=21.74 Aligned_cols=22 Identities=14% Similarity=0.132 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhh
Q psy1931 80 GFNEIEVDAKVMAYRLHLNKNV 101 (145)
Q Consensus 80 G~~eeEIe~kv~~lR~~Ll~e~ 101 (145)
+++.+|+.+++.+++.+|.+-.
T Consensus 11 ~~s~~EL~~~l~elk~ELf~LR 32 (71)
T 1vq8_V 11 DMTPAEREAELDDLKTELLNAR 32 (71)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999998864
No 42
>4fm4_A NitrIle hydratase alpha subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=24.41 E-value=68 Score=25.81 Aligned_cols=30 Identities=23% Similarity=0.122 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHcC-CCHHHHHHHHHH
Q psy1931 63 RKIELQCLELQELLEEQG-FNEIEVDAKVMA 92 (145)
Q Consensus 63 R~IEvk~~ELrd~LEe~G-~~eeEIe~kv~~ 92 (145)
--||+++-.|+.-|.++| ++++.|++-++.
T Consensus 7 ~~~e~rv~ALe~lL~eKGli~~~~id~~~~~ 37 (209)
T 4fm4_A 7 AVMEQRVDALFVLTKELGLVTDQTVPDYEDA 37 (209)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCTTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 357889999999999999 588888777663
No 43
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=24.15 E-value=1.3e+02 Score=22.65 Aligned_cols=36 Identities=14% Similarity=0.250 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHH---HHHHHHHHHHHHh
Q psy1931 64 KIELQCLELQELLEEQGFNEIEVD---AKVMAYRLHLNKN 100 (145)
Q Consensus 64 ~IEvk~~ELrd~LEe~G~~eeEIe---~kv~~lR~~Ll~e 100 (145)
.+=..+||+++.|++.. ++++|+ .++.+..+.+.++
T Consensus 102 ~fLme~me~rE~leea~-~~~~l~~l~~~~~~~~~~~~~~ 140 (181)
T 3uo3_A 102 QLLLKVLDIHDELSQMD-DEAGVKLLEKQNKERIQDIEAQ 140 (181)
T ss_dssp HHHHHHHHHHHHHHHCC-SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHHHHH
Confidence 45567899999999964 333333 3344444444333
No 44
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=23.75 E-value=43 Score=22.84 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHcCCC
Q psy1931 67 LQCLELQELLEEQGFN 82 (145)
Q Consensus 67 vk~~ELrd~LEe~G~~ 82 (145)
++|.||+++|...|++
T Consensus 29 lkVaeLK~eLk~RGL~ 44 (75)
T 2kvu_A 29 MKVAELKQELKLRSLP 44 (75)
T ss_dssp SCHHHHHHHHHHTTCC
T ss_pred CcHHHHHHHHHHcCCC
Confidence 6899999999999974
No 45
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=23.28 E-value=71 Score=20.28 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHcCCC
Q psy1931 67 LQCLELQELLEEQGFN 82 (145)
Q Consensus 67 vk~~ELrd~LEe~G~~ 82 (145)
++|.||++.|...|++
T Consensus 13 lkV~eLK~~L~~rGL~ 28 (55)
T 2do1_A 13 LKLAELKQECLARGLE 28 (55)
T ss_dssp SCHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHcCCC
Confidence 5789999999999874
No 46
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=22.59 E-value=33 Score=21.54 Aligned_cols=16 Identities=25% Similarity=0.617 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHcCCC
Q psy1931 67 LQCLELQELLEEQGFN 82 (145)
Q Consensus 67 vk~~ELrd~LEe~G~~ 82 (145)
++|.||+++|...|++
T Consensus 8 ltV~eLK~~Lk~RGL~ 23 (51)
T 1h1j_S 8 LTVVQLKDLLTKRNLS 23 (51)
T ss_dssp CCHHHHHHHHHHTTCC
T ss_pred CcHHHHHHHHHHcCCC
Confidence 5789999999999974
No 47
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=22.08 E-value=1.2e+02 Score=22.75 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=24.2
Q ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHH
Q psy1931 70 LELQELLEEQG-FNEIEVDAKVMAYRLHLNK 99 (145)
Q Consensus 70 ~ELrd~LEe~G-~~eeEIe~kv~~lR~~Ll~ 99 (145)
.+|+..|...| -++++|++++...+.++..
T Consensus 126 e~L~~RL~~Rg~e~~e~i~~Rl~~a~~e~~~ 156 (186)
T 1ex7_A 126 EDLKKRLEGRGTETEESINKRLSAAQAELAY 156 (186)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Confidence 46788888888 5799999999988877653
No 48
>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens}
Probab=22.04 E-value=24 Score=23.28 Aligned_cols=19 Identities=37% Similarity=0.655 Sum_probs=16.1
Q ss_pred CCCCCCCCCcCCCcccccc
Q psy1931 3 NGIGLTTARGSGTNGYVQR 21 (145)
Q Consensus 3 NGIGL~TaRGSGTSGyVQr 21 (145)
+||-|..+.|||..|-|.+
T Consensus 29 ~gidl~~V~GTG~~GRItk 47 (70)
T 2coo_A 29 NNIKLSEVVGSGKDGRILK 47 (70)
T ss_dssp HTCCGGGSCCCSTTSCCCH
T ss_pred hCCCccccCCCCCCCceeH
Confidence 5889999999999997654
No 49
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.72 E-value=1.6e+02 Score=22.56 Aligned_cols=40 Identities=13% Similarity=0.237 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHHHhh
Q psy1931 62 KRKIELQCLELQELLEEQGFNEIEVDA---KVMAYRLHLNKNV 101 (145)
Q Consensus 62 KR~IEvk~~ELrd~LEe~G~~eeEIe~---kv~~lR~~Ll~e~ 101 (145)
+.++-.+-.||+..+.....|++.|++ ++.++|.+|..+.
T Consensus 91 r~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 91 RQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566777777777789988884 4567777777654
No 50
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.57 E-value=79 Score=23.21 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=19.3
Q ss_pred cCCCHHHHHHHHHHHHHHHHHh
Q psy1931 79 QGFNEIEVDAKVMAYRLHLNKN 100 (145)
Q Consensus 79 ~G~~eeEIe~kv~~lR~~Ll~e 100 (145)
.++|.+|+.+++.+++.+|.+=
T Consensus 10 R~~s~eEL~~~L~eLK~ELf~L 31 (123)
T 2zkr_v 10 RGKKKEELLKQLDDLKVELSQL 31 (123)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999875
No 51
>1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease BET lactamase, cilastatin, complex (hydrolase-inhibitor), hydro; HET: NAG CIL; 2.00A {Homo sapiens} SCOP: c.1.9.7 PDB: 1itq_A*
Probab=21.45 E-value=1.7e+02 Score=24.74 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy1931 69 CLELQELLEEQGFNEIEVDAKVMAYRLHLNKNVEKINEP 107 (145)
Q Consensus 69 ~~ELrd~LEe~G~~eeEIe~kv~~lR~~Ll~e~~~~~~~ 107 (145)
.-.|-++|.+.|+++++|+.-+..==-.++++.+.....
T Consensus 305 ~p~l~~~L~~~G~se~~i~ki~g~N~lRvl~~v~~~a~~ 343 (369)
T 1itu_A 305 YPDLIAELLRRNWTEAEVKGALADNLLRVFEAVEQASNL 343 (369)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 346778889999999999987654444466666555444
No 52
>3mlg_A Putative uncharacterized protein, linker, putativ uncharacterized protein; knot, designed protein, fusion protein, chimera protein; 2.29A {Helicobacter pylori}
Probab=21.36 E-value=1e+02 Score=24.38 Aligned_cols=48 Identities=13% Similarity=0.208 Sum_probs=28.9
Q ss_pred HHHHHHHHHcCCCH----------------HHHHHHHHHHHHHHHHhhhhcCCCCCccCCCccc
Q psy1931 70 LELQELLEEQGFNE----------------IEVDAKVMAYRLHLNKNVEKINEPPLDELGRVMD 117 (145)
Q Consensus 70 ~ELrd~LEe~G~~e----------------eEIe~kv~~lR~~Ll~e~~~~~~~~~~~~~r~~~ 117 (145)
.-++.-||++|.++ ++|+.+.+.+--.++.+.-..++..++.+|-|.+
T Consensus 42 AamE~llEe~g~eE~~~~~~~~~~~d~e~~d~I~~~~~dL~Ie~mg~ILs~~~~~~~~~gsP~e 105 (189)
T 3mlg_A 42 ALLETFIEKEDLEEKFESFAKALRIDEELQQKIESRKTDIVIQSMANILSGSGSGSGSSGNPLD 105 (189)
T ss_dssp HHHHHHHHHTTCHHHHHHHHGGGGTCHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHHHHhhhHhhHHHHHHHccchHHHHHHHHHccCCCCCCCCCChHH
Confidence 34556677777764 2688888888888888887788888887777755
No 53
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=21.35 E-value=94 Score=27.93 Aligned_cols=43 Identities=16% Similarity=0.061 Sum_probs=32.7
Q ss_pred hhHHhHHhhhHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHH
Q psy1931 54 REILDHEKKRKIELQCLELQELLEEQG--FNEIEVDAKVMAYRLH 96 (145)
Q Consensus 54 ~eIleHerKR~IEvk~~ELrd~LEe~G--~~eeEIe~kv~~lR~~ 96 (145)
.+.+.-+.|-+|+-+|.++++.|.+.| .+.++|++++++|++.
T Consensus 572 ~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~~~~~l~~~ 616 (675)
T 3d2f_A 572 APFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASL 616 (675)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHTTTGGGGCCHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHH
Confidence 345566778889999999999887665 4578888888888754
No 54
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=21.23 E-value=2.2e+02 Score=24.16 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhhh
Q psy1931 69 CLELQELLEEQG-FNEIEVDAKVMAYRLHLNKNVEK 103 (145)
Q Consensus 69 ~~ELrd~LEe~G-~~eeEIe~kv~~lR~~Ll~e~~~ 103 (145)
+.-|+..|.++| ++++++++-.++.++.+.+....
T Consensus 335 i~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~ 370 (407)
T 1qs0_A 335 IARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKE 370 (407)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 556889999999 69999999999999988876544
No 55
>1avo_A 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=21.07 E-value=79 Score=20.25 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q psy1931 85 EVDAKVMAYRLHLNKNVEK 103 (145)
Q Consensus 85 EIe~kv~~lR~~Ll~e~~~ 103 (145)
++..+|+.||+.|..+++.
T Consensus 6 ~~~~kv~~fk~~l~~eAE~ 24 (60)
T 1avo_A 6 EAQAKVDVFREDLCTKTEN 24 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5667888888888887654
No 56
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=20.82 E-value=81 Score=24.57 Aligned_cols=28 Identities=18% Similarity=0.358 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy1931 80 GFNEIEVDAKVMAYRLHLNKNVEKINEP 107 (145)
Q Consensus 80 G~~eeEIe~kv~~lR~~Ll~e~~~~~~~ 107 (145)
++.+.+|.+|+.++|+++.++......|
T Consensus 143 a~~d~~l~~kl~~~r~~~~~~v~~~~~p 170 (173)
T 4grd_A 143 SGNSVDYANRLAAFRVRQNEAAHAMVLP 170 (173)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccCC
Confidence 6777899999999999998887655444
No 57
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=20.76 E-value=65 Score=25.30 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhcCC
Q psy1931 80 GFNEIEVDAKVMAYRLHLNKNVEKINE 106 (145)
Q Consensus 80 G~~eeEIe~kv~~lR~~Ll~e~~~~~~ 106 (145)
++.+++|.+++..+|+++.++..+.++
T Consensus 153 a~~d~~l~~kl~~~r~~~~~~v~~~~e 179 (181)
T 4b4k_A 153 GSFHDDIHDALELRREAIEKDVREGSE 179 (181)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 567788888888888888877655543
No 58
>2bze_A KIAA0252 protein; human RTF1 PLUS3 domain, transcription, elongation, PAF1 complex, histone H3 methylation, H2B ubiquitination, CDC73, LEO1, CTR9; NMR {Homo sapiens} SCOP: b.34.21.1
Probab=20.72 E-value=1.1e+02 Score=22.67 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHH
Q psy1931 66 ELQCLELQELLEEQGF---NEIEVDAKVMAYRLH 96 (145)
Q Consensus 66 Evk~~ELrd~LEe~G~---~eeEIe~kv~~lR~~ 96 (145)
|-.|..|++.++..|+ +-++|++|..++.+-
T Consensus 118 e~Ef~~w~~~~~~~~~~~PT~~~v~~K~~~i~~a 151 (153)
T 2bze_A 118 ESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEA 151 (153)
T ss_dssp HHHHHHHHHHHHHHTCCCCBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 5678889999999884 799999999988754
No 59
>2hep_A UPF0291 protein YNZC; SR384, structure, autostructure, northeast structural genomics consortium, PSI-1, protein structure initiative, NESG; NMR {Bacillus subtilis} SCOP: a.2.21.1
Probab=20.43 E-value=1.9e+02 Score=20.10 Aligned_cols=63 Identities=17% Similarity=0.093 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhc------CCCCCccCCCcccccCCcccchhhhhhhh
Q psy1931 68 QCLELQELLEEQGFNEIEVDAKVMAYRLHLNKNVEKI------NEPPLDELGRVMDDTSLKFPLLQKWQRLS 133 (145)
Q Consensus 68 k~~ELrd~LEe~G~~eeEIe~kv~~lR~~Ll~e~~~~------~~~~~~~~~r~~~~~~~~f~~~q~~~~~~ 133 (145)
++-||--+=.+.|+|++|..++ ..||+..++..-.. +-...++-|--+. .-+....|...-|.
T Consensus 9 RINeLakK~K~~GLT~eEk~EQ-~~LR~eYl~~fR~~~r~~L~~ikivD~~G~dvt--p~Klk~~q~~~~l~ 77 (85)
T 2hep_A 9 RINELAAKAKAGVITEEEKAEQ-QKLRQEYLKGFRSSMKNTLKSVKIIDPEGNDVT--PEKLKREQRNNKLH 77 (85)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHHCC-------------------------------------
T ss_pred HHHHHHHHHhccCCCHHHHHHH-HHHHHHHHHHHHHHHHHHhcceeEECCCCCcCC--HHHHHHHHHHhCCc
Confidence 5667776667889999998876 57888888753110 1113444443333 33666666655543
No 60
>3u5e_h 60S ribosomal protein L35-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 1s1i_X 2wwa_N 2ww9_N 3izc_c 3izs_c 2wwb_N 3o5h_c 3o58_c 3u5i_h 4b6a_h
Probab=20.36 E-value=85 Score=22.94 Aligned_cols=25 Identities=4% Similarity=0.085 Sum_probs=21.0
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhhh
Q psy1931 79 QGFNEIEVDAKVMAYRLHLNKNVEK 103 (145)
Q Consensus 79 ~G~~eeEIe~kv~~lR~~Ll~e~~~ 103 (145)
.++|.+|+.+++.+++.+|.+=..+
T Consensus 10 R~~s~eEL~~~L~eLK~ELf~LRfq 34 (120)
T 3u5e_h 10 RTKSKEQLASQLVDLKKELAELKVQ 34 (120)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999986433
Done!