RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1931
(145 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.098
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 40 DLERMDAMNNKQPNREILDHEKKRKIELQCLELQELLEE 78
DL +D + N +L+ K +KI++ L+ LEE
Sbjct: 1858 DLRALDTVTN------VLNFIKLQKIDIIELQKSLSLEE 1890
>2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Arabidopsis thaliana}
Length = 61
Score = 27.1 bits (59), Expect = 0.56
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 60 EKKRKIELQCLELQELLEEQGF-NEIEVDAKVMAYRLHL 97
+K+R+IE+ +E +E LEEQG N E++ KV R L
Sbjct: 16 QKRRRIEVALIEYRETLEEQGMKNPEEIERKVEINRKRL 54
>1y7r_A Hypothetical protein SA2161; structural genomics, protein structure
initiative, PSI, midwest center for structural genomics;
1.70A {Staphylococcus aureus} SCOP: d.108.1.1
Length = 133
Score = 26.7 bits (59), Expect = 2.0
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 54 REILDHEKKRKIELQCLEL------QELLEEQGFNEIEVDAKVMAYR 94
I+ + K +E + L +L + GF E D+ M +
Sbjct: 86 EHIMKYIKNVSVESVYVSLIADYPADKLYVKFGFMPTEPDSGGMYIK 132
>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis
inhibition, bromopyruvate, amino-acid biosynthesis; HET:
FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A
3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A
Length = 644
Score = 27.1 bits (60), Expect = 2.7
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 7/30 (23%)
Query: 57 LDHEKKRKIELQCLELQELLEEQGFNEIEV 86
+ +K + +LL G+ EIEV
Sbjct: 90 MSPARK-------RRMFDLLVRMGYKEIEV 112
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 2.7
Identities = 21/111 (18%), Positives = 43/111 (38%), Gaps = 18/111 (16%)
Query: 32 KTNLKTEKDLERMDAMNNKQPNREILDHEKK-------RKIELQCLEL--QEL-LEEQGF 81
K L T + + D ++ LDH + + L+ L+ Q+L E
Sbjct: 267 KI-LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 82 N--EIEVDAKVMAYRLHLNKNVEKINEPPLDELGRVMDDT--SLKFPLLQK 128
N + + A+ + L N + +N D+L +++ + L+ +K
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVN---CDKLTTIIESSLNVLEPAEYRK 373
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 2.9
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 8/32 (25%)
Query: 77 EEQGFNEIEVDAKVMAYR------LHLNKNVE 102
E+Q +++ K+ Y L + +E
Sbjct: 18 EKQALKKLQASLKL--YADDSAPALAIKATME 47
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.3 bits (57), Expect = 3.6
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 26 VRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHEKKRKIELQCLELQELLEEQ 79
+RK +E+ K L+ +DA + + + K+ +E E +E+
Sbjct: 87 IRKWREEQ----RKRLQELDAASKVM--EQEWREKAKKDLEEWNQRQSEQVEKN 134
>3p4e_A Phosphoribosylformylglycinamidine cyclo-ligase; structural
genomics, center for structural genomics of infec
diseases, csgid; HET: AMP CIT; 1.77A {Vibrio cholerae}
PDB: 1cli_A
Length = 349
Score = 26.3 bits (59), Expect = 4.4
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 10/40 (25%)
Query: 5 IGLTTARGSG--TNGYVQRNWSLVRKTKEKTNLKTEKDLE 42
I + + SG +NGY SLVRK E + + L
Sbjct: 186 IAVGS---SGPHSNGY-----SLVRKILEVSKADKNERLA 217
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold,
cell membrane, cell outer membrane, ME protein; 3.30A
{Escherichia coli}
Length = 395
Score = 25.7 bits (57), Expect = 5.7
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
Query: 35 LKTEKDLERMDAMNNKQPNREILDHEKKRKIELQCLELQELLEEQGFNEIEVDAKV 90
+K + + ++A + E LD IE L++ G V A V
Sbjct: 88 VKDDMLKQNLEASGVRV--GESLDRTTIADIEK---GLEDFYYSVGKYSASVKAVV 138
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur
protein, non-mevalonate pathway, terpene biosynt
isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Length = 366
Score = 25.6 bits (57), Expect = 8.2
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 7/29 (24%)
Query: 74 ELLEEQGFNEIEVDAK-------VMAYRL 95
E E+ GF +V K V A +
Sbjct: 170 EKFEKWGFTNYKVSIKGSDVLQNVRANLI 198
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 25.4 bits (56), Expect = 8.7
Identities = 10/89 (11%), Positives = 27/89 (30%), Gaps = 18/89 (20%)
Query: 31 EKTNLKTEKDLERMDAMNN------------KQPNREILDHEKKRKIELQCLELQELLEE 78
+ + + E D N ++ +K K++ + +E L +
Sbjct: 537 NEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLYD 596
Query: 79 QGFNEIEVDAKVMAYRLHLNKNVEKINEP 107
+GF+ I+ + + +
Sbjct: 597 EGFDSIKAKYI------AKYEELASLGNI 619
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.134 0.387
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,181,470
Number of extensions: 120452
Number of successful extensions: 289
Number of sequences better than 10.0: 1
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 35
Length of query: 145
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 60
Effective length of database: 4,328,508
Effective search space: 259710480
Effective search space used: 259710480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.2 bits)