RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1931
         (145 letters)



>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 291

 Score = 28.0 bits (62), Expect = 0.44
 Identities = 14/81 (17%), Positives = 30/81 (37%)

Query: 23  WSLVRKTKEKTNLKTEKDLERMDAMNNKQPNREILDHEKKRKIELQCLELQELLEEQGFN 82
            +++   K  T+    K L+  +     + +  +   EK   +     +   LL EQG  
Sbjct: 62  HNIIDNCKLVTDECRRKLLQLKEQYYAIEVDPVLTVEEKFPYMVEWYTKSHGLLIEQGIP 121

Query: 83  EIEVDAKVMAYRLHLNKNVEK 103
           + ++   V    + L +  E 
Sbjct: 122 KAKLKEIVADSDVMLKEGYEN 142


>d1wu4a1 a.102.1.2 (A:6-381) Xylanase Y {Bacillus halodurans [TaxId:
           86665]}
          Length = 376

 Score = 26.5 bits (58), Expect = 1.3
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 75  LLEEQGFNEIEVDAKVMAYRLHL--NKNVEKINEPPLDELGRVMDDTS 120
           L +E G++E E+  +V      L  +    KI     D+LG ++D  +
Sbjct: 12  LFKEFGYSEAEIQERVKDTWEQLFGDNPETKIYYEVGDDLGYLLDTGN 59


>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
           halodurans [TaxId: 86665]}
          Length = 231

 Score = 24.6 bits (52), Expect = 4.9
 Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 5/74 (6%)

Query: 71  ELQELLEEQGFNEIEVDAKVMAYRLHLNKNVEKINEPPLDELGRVMDDTSLKFPLLQKWQ 130
           +  ++LEE GF   E+      +      +   +      EL   +     ++     +Q
Sbjct: 150 DWLKMLEEAGFELEELHCFHKTFIFEDWCDRMNVTTEKKQELSDFIKSKPTEY-----YQ 204

Query: 131 RLSHECEGHPLIKF 144
           +     E   +  F
Sbjct: 205 KFKIVVEDGRVYSF 218


>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO)
           {Haemophilus influenzae [TaxId: 727]}
          Length = 225

 Score = 24.3 bits (51), Expect = 6.2
 Identities = 4/16 (25%), Positives = 10/16 (62%)

Query: 71  ELQELLEEQGFNEIEV 86
             +  L+  GF+++E+
Sbjct: 196 THKVRLKNVGFSQVEL 211


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0676    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 538,755
Number of extensions: 23922
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 19
Length of query: 145
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,350,386
Effective search space: 91826248
Effective search space used: 91826248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (22.8 bits)