BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1937
(307 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O54941|SMCE1_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1 OS=Mus musculus
GN=Smarce1 PE=1 SV=1
Length = 411
Score = 234 bits (597), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 122/205 (59%), Positives = 151/205 (73%), Gaps = 4/205 (1%)
Query: 92 LMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKAST 151
LMPYMRYSRKVWDQVKA N DLKLWEIGKIIG MWRDL +++K EY+ +YE EK +
Sbjct: 70 LMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNES 129
Query: 152 KLASISRPTWRAKAKASKPKQLRKSREARPKDSGEKMQIGR--IDIQPAEDEDEQEDGYS 209
A + P + A A + E+R + S +M+ G + IQPAED D+ +DG+S
Sbjct: 130 MKAYHNSPAYLAYINAKSRAEAALEEESRQRQS--RMEKGEPYMSIQPAEDPDDYDDGFS 187
Query: 210 VKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQ 269
+KH A AR+ RNHRLI+EI S+SVVPDVRSVVTT RMQVLKRQVQSL +HQ+KLEAEL Q
Sbjct: 188 MKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRKLEAELLQ 247
Query: 270 IEEKFEAKKRKFVESSEQFQEELKK 294
IEE+ + KKRKF+ES++ F ELK+
Sbjct: 248 IEERHQEKKRKFLESTDSFNNELKR 272
Score = 94.7 bits (234), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 43/56 (76%), Positives = 50/56 (89%)
Query: 2 EDGYSVKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQ 57
+DG+S+KH A AR+ RNHRLI+EI S+SVVPDVRSVVTT RMQVLKRQVQSL +HQ
Sbjct: 183 DDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQ 238
>sp|Q969G3|SMCE1_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1 OS=Homo sapiens
GN=SMARCE1 PE=1 SV=2
Length = 411
Score = 233 bits (595), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 122/205 (59%), Positives = 151/205 (73%), Gaps = 4/205 (1%)
Query: 92 LMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKAST 151
LMPYMRYSRKVWDQVKA N DLKLWEIGKIIG MWRDL +++K EY+ +YE EK +
Sbjct: 70 LMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNES 129
Query: 152 KLASISRPTWRAKAKASKPKQLRKSREARPKDSGEKMQIGR--IDIQPAEDEDEQEDGYS 209
A + P + A A + E+R + S +M+ G + IQPAED D+ +DG+S
Sbjct: 130 MKAYHNSPAYLAYINAKSRAEAALEEESRQRQS--RMEKGEPYMSIQPAEDPDDYDDGFS 187
Query: 210 VKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQ 269
+KH A AR+ RNHRLI+EI S+SVVPDVRSVVTT RMQVLKRQVQSL +HQ+KLEAEL Q
Sbjct: 188 MKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRKLEAELLQ 247
Query: 270 IEEKFEAKKRKFVESSEQFQEELKK 294
IEE+ + KKRKF+ES++ F ELK+
Sbjct: 248 IEERHQEKKRKFLESTDSFNNELKR 272
Score = 94.7 bits (234), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/56 (76%), Positives = 50/56 (89%)
Query: 2 EDGYSVKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQ 57
+DG+S+KH A AR+ RNHRLI+EI S+SVVPDVRSVVTT RMQVLKRQVQSL +HQ
Sbjct: 183 DDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQ 238
>sp|Q56A18|SMCE1_RAT SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1 OS=Rattus norvegicus
GN=Smarce1 PE=1 SV=1
Length = 376
Score = 233 bits (595), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 122/205 (59%), Positives = 151/205 (73%), Gaps = 4/205 (1%)
Query: 92 LMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKAST 151
LMPYMRYSRKVWDQVKA N DLKLWEIGKIIG MWRDL +++K EY+ +YE EK +
Sbjct: 35 LMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNES 94
Query: 152 KLASISRPTWRAKAKASKPKQLRKSREARPKDSGEKMQIGR--IDIQPAEDEDEQEDGYS 209
A + P + A A + E+R + S +M+ G + IQPAED D+ +DG+S
Sbjct: 95 MKAYHNSPAYLAYINAKSRAEAALEEESRQRQS--RMEKGEPYMSIQPAEDPDDYDDGFS 152
Query: 210 VKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQ 269
+KH A AR+ RNHRLI+EI S+SVVPDVRSVVTT RMQVLKRQVQSL +HQ+KLEAEL Q
Sbjct: 153 MKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRKLEAELLQ 212
Query: 270 IEEKFEAKKRKFVESSEQFQEELKK 294
IEE+ + KKRKF+ES++ F ELK+
Sbjct: 213 IEERHQEKKRKFLESTDSFNNELKR 237
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/56 (76%), Positives = 50/56 (89%)
Query: 2 EDGYSVKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQ 57
+DG+S+KH A AR+ RNHRLI+EI S+SVVPDVRSVVTT RMQVLKRQVQSL +HQ
Sbjct: 148 DDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQ 203
>sp|P33417|IXR1_YEAST Intrastrand cross-link recognition protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IXR1 PE=1
SV=2
Length = 597
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 87 PPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDY 141
PP++P P++++++++ V +N D L EI KIIG+ WR+L +K EY E Y
Sbjct: 433 PPKRPSGPFIQFTQEIRPTVVKENPDKGLIEITKIIGERWRELDPAKKAEYTETY 487
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 31/54 (57%)
Query: 88 PEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDY 141
P++P Y +S + +++ Q + K+ E+ K+ W++L +DQK + E++
Sbjct: 361 PKRPSSAYFLFSMSIRNELLQQFPEAKVPELSKLASARWKELTDDQKKPFYEEF 414
>sp|Q6CVH3|NHP6_KLULA Non-histone chromosomal protein 6 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=NHP6 PE=3 SV=1
Length = 93
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 80 RGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEY-- 137
R K P P++ L YM ++ + D V+A+N + ++G+I+G+ W+ L ED+K Y
Sbjct: 10 RKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKAPYEA 69
Query: 138 -----VEDYEQEKNLKASTKLAS 155
+ YE EK L +TK S
Sbjct: 70 KAEADKKRYESEKELYIATKAQS 92
>sp|Q6AZF8|HM20A_XENLA High mobility group protein 20A OS=Xenopus laevis GN=hmg20a PE=2
SV=1
Length = 345
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 11/104 (10%)
Query: 53 LTMHQHC-QRVSRRGNVSQK--MLTAKTDG--------RGPKAPKPPEKPLMPYMRYSRK 101
LT+HQ Q++ G + Q+ + A+ G R P+ P+ PL Y+R+ +
Sbjct: 55 LTLHQSGEQQLGNSGELRQEEELPKARRGGWNKGRKRKRSPRDNNAPKAPLTGYVRFMNE 114
Query: 102 VWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 145
+Q++ + D+ EI +I+G W LP +K Y+++ E++K
Sbjct: 115 RREQLRTERPDVPFPEITRIVGSEWSKLPAHEKQHYLDEAEKDK 158
>sp|Q02486|ABF2_YEAST ARS-binding factor 2, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ABF2 PE=1 SV=1
Length = 183
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 38/57 (66%)
Query: 87 PPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQ 143
PP+KP P+++Y+ +V QV AQ+ D ++ KIIG W+ L + K +Y+++Y++
Sbjct: 115 PPKKPAGPFIKYANEVRSQVFAQHPDKSQLDLMKIIGDKWQSLDQSIKDKYIQEYKK 171
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 67 NVSQKMLTA--KTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQ 124
N++ +L A +T R + P++P Y Y + Q +N L+ EI KI G+
Sbjct: 20 NLASTLLKASKRTQLRNELIKQGPKRPTSAYFLYLQDHRSQFVKENPTLRPAEISKIAGE 79
Query: 125 MWRDLPEDQKTEYVED 140
W++L D K +Y+ +
Sbjct: 80 KWQNLEADIKEKYISE 95
>sp|P40630|TFAM_MOUSE Transcription factor A, mitochondrial OS=Mus musculus GN=Tfam PE=1
SV=2
Length = 243
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 88 PEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQE 144
P+KP+ Y+R+S + + KA++ D KL E+ + I +WR+LPE +K Y D++ E
Sbjct: 49 PKKPMSSYLRFSTEQLPKFKAKHPDAKLSELVRKIAALWRELPEAEKKVYEADFKAE 105
>sp|Q75B82|NHP6_ASHGO Non-histone chromosomal protein 6 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NHP6
PE=3 SV=1
Length = 94
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 85 PKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVED---- 140
P P++ + YM ++ + D V+A+N + ++G+++G+ W+ L +D+K Y
Sbjct: 18 PNAPKRAMSAYMFFANENRDIVRAENPGISFGQVGRVLGEKWKALSDDEKQPYEAKAEAD 77
Query: 141 ---YEQEKNLKASTKLA 154
YE EK L +TK A
Sbjct: 78 KKRYESEKELYNATKAA 94
>sp|Q91ZW1|TFAM_RAT Transcription factor A, mitochondrial OS=Rattus norvegicus GN=Tfam
PE=2 SV=1
Length = 244
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 88 PEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQE 144
P+KP+ Y+R+S + + KA++ D K+ E+ + I MWR+LPE +K Y D++ E
Sbjct: 49 PKKPMSSYLRFSTEQLPKFKAKHPDAKVSELIRKIAAMWRELPEAEKKVYEADFKAE 105
>sp|P0CB47|UBFL1_HUMAN Putative upstream-binding factor 1-like protein 1 OS=Homo sapiens
GN=UBTFL1 PE=5 SV=1
Length = 393
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 84 APKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQ 143
P P++PL Y R+ ++ W Q ++ E+ KI+ + +R+LPE K +Y++D+ +
Sbjct: 96 GPDFPKRPLTAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQMKQKYIQDFRK 155
Query: 144 EK 145
EK
Sbjct: 156 EK 157
>sp|Q6DIJ5|HM20A_XENTR High mobility group protein 20A OS=Xenopus tropicalis GN=hmg20a
PE=2 SV=1
Length = 345
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 38/66 (57%)
Query: 80 RGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVE 139
R P+ P+ PL Y+R+ + +Q++ + D+ EI +I+G W LP +K Y++
Sbjct: 93 RSPRDNNAPKAPLTGYVRFMNERREQLRTERPDVPFPEITRIVGSEWSKLPAHEKQHYLD 152
Query: 140 DYEQEK 145
+ E++K
Sbjct: 153 EAEKDK 158
>sp|Q00059|TFAM_HUMAN Transcription factor A, mitochondrial OS=Homo sapiens GN=TFAM PE=1
SV=1
Length = 246
Score = 44.7 bits (104), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 88 PEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQE 144
P+KP+ Y+R+S++ KAQN D K E+ + I Q WR+LP+ +K Y + Y E
Sbjct: 50 PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAE 106
>sp|Q5D144|TFAM_PIG Transcription factor A, mitochondrial OS=Sus scrofa GN=TFAM PE=2
SV=1
Length = 246
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 88 PEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDY 141
P+KP+ Y+R+S++ KAQN D K E+ K I ++WR+LP+ +K Y + Y
Sbjct: 50 PKKPMTSYVRFSKEQLPIFKAQNPDAKNSELIKKIAELWRELPDSEKKIYEDAY 103
>sp|Q5B995|NHP6_EMENI Non-histone chromosomal protein 6 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=nhp6 PE=3 SV=1
Length = 106
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%)
Query: 74 TAKTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQ 133
T +T GR K P P++ L YM ++ D+V+ +N + ++GK++G+ W+ L + +
Sbjct: 13 TRETGGRKKKDPNAPKRGLSAYMFFANDNRDKVREENPGISFGQVGKMLGEKWKSLSDKE 72
Query: 134 KTEY 137
+ Y
Sbjct: 73 RKPY 76
>sp|Q0II87|TFAM_BOVIN Transcription factor A, mitochondrial OS=Bos taurus GN=TFAM PE=2
SV=1
Length = 246
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 88 PEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDY 141
P+KP+ Y+R+S++ KAQN D K E+ K I ++WR+LP+ +K Y + Y
Sbjct: 50 PKKPMTSYVRFSKEQLPIFKAQNPDAKNSELIKKIAKLWRELPDSEKKIYEDAY 103
>sp|P11633|NHP6B_YEAST Non-histone chromosomal protein 6B OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NHP6B PE=1 SV=3
Length = 99
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVED-- 140
K P P++ L YM ++ + D V+++N D+ ++G+I+G+ W+ L ++K Y
Sbjct: 22 KDPNAPKRGLSAYMFFANENRDIVRSENPDVTFGQVGRILGERWKALTAEEKQPYESKAQ 81
Query: 141 -----YEQEKNLKASTK 152
YE EK L +T+
Sbjct: 82 ADKKRYESEKELYNATR 98
>sp|Q6DJL0|TOX4A_XENLA TOX high mobility group box family member 4-A OS=Xenopus laevis
GN=tox4-a PE=2 SV=1
Length = 597
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 85 PKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEY 137
P P+KPL Y + R +K QN + E+ KI+ MW L E+QK Y
Sbjct: 219 PNEPQKPLSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVY 271
>sp|A4QNP0|TOX4_XENTR TOX high mobility group box family member 4 OS=Xenopus tropicalis
GN=tox4 PE=2 SV=1
Length = 597
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 85 PKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEY 137
P P+KPL Y + R +K QN + E+ KI+ MW L E+QK Y
Sbjct: 219 PNEPQKPLSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVY 271
>sp|O15405|TOX3_HUMAN TOX high mobility group box family member 3 OS=Homo sapiens GN=TOX3
PE=1 SV=2
Length = 576
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 85 PKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQE 144
P P+KP+ Y + R +K QN + E+ KI+ MW L E+QK Y E
Sbjct: 252 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 311
Query: 145 K 145
K
Sbjct: 312 K 312
>sp|Q80W03|TOX3_MOUSE TOX high mobility group box family member 3 OS=Mus musculus GN=Tox3
PE=2 SV=1
Length = 575
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 85 PKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEY 137
P P+KP+ Y + R +K QN + E+ KI+ MW L E+QK Y
Sbjct: 251 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVY 303
>sp|Q6IRR0|TOX4B_XENLA TOX high mobility group box family member 4-B OS=Xenopus laevis
GN=tox4-b PE=2 SV=1
Length = 594
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 85 PKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEY 137
P P+KPL Y + R +K QN + E+ KI+ MW L E+QK Y
Sbjct: 219 PNEPQKPLSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVY 271
>sp|Q4PBZ9|NHP6_USTMA Non-histone chromosomal protein 6 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=NHP6 PE=3 SV=2
Length = 99
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEY 137
K P P++PL YM +S+ ++VK N + E+G+++G W+++ E +K Y
Sbjct: 23 KDPDAPKRPLSAYMFFSQDQRERVKNANPEAGFGEVGRLLGAKWKEMSEAEKKPY 77
>sp|B7SBD2|TOX3_RAT TOX high mobility group box family member 3 OS=Rattus norvegicus
GN=Tox3 PE=1 SV=1
Length = 577
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 85 PKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEY 137
P P+KP+ Y + R +K QN + E+ KI+ MW L E+QK Y
Sbjct: 251 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVY 303
>sp|O94900|TOX_HUMAN Thymocyte selection-associated high mobility group box protein TOX
OS=Homo sapiens GN=TOX PE=2 SV=3
Length = 526
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 11/103 (10%)
Query: 85 PKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVED---- 140
P P+KP+ Y + R +K QN + E+ KI+ MW L E+QK Y +
Sbjct: 258 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAA 317
Query: 141 ----YEQEKNLKASTKLASISRPTWRAKAKASKPKQLRKSREA 179
+Q +AS S S P K S+P QL S+ +
Sbjct: 318 KKEYLKQLAAYRASLVSKSYSEPV---DVKTSQPPQLINSKPS 357
>sp|Q4H0T5|TFAM_TRACR Transcription factor A, mitochondrial OS=Trachypithecus cristatus
GN=TFAM PE=2 SV=1
Length = 246
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 35/54 (64%)
Query: 88 PEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDY 141
P+KP+ Y+R+S++ KA+N D K E+ + I ++WR+LP+ +K Y + Y
Sbjct: 50 PKKPVSSYLRFSKEQLPIFKAENPDAKPTELIRRIAKLWRELPDSKKKIYQDAY 103
>sp|P40625|HMG_TETPY High mobility group protein OS=Tetrahymena pyriformis GN=HMG PE=1
SV=1
Length = 99
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 85 PKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEY 137
P PP++PL + + + +DQVK +N + K+ E+ +I + W+ + E +K +Y
Sbjct: 8 PAPPKRPLSAFFLFKQHNYDQVKKENPNAKITELTSMIAEKWKHVTEKEKKKY 60
>sp|Q5R6A9|TOX4_PONAB TOX high mobility group box family member 4 OS=Pongo abelii GN=TOX4
PE=2 SV=2
Length = 621
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 85 PKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEY 137
P P+KP+ Y + R +K QN + E+ KI+ MW L E+QK Y
Sbjct: 220 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVY 272
>sp|O94842|TOX4_HUMAN TOX high mobility group box family member 4 OS=Homo sapiens GN=TOX4
PE=1 SV=1
Length = 621
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 85 PKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEY 137
P P+KP+ Y + R +K QN + E+ KI+ MW L E+QK Y
Sbjct: 220 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVY 272
>sp|Q0P5K4|TOX4_BOVIN TOX high mobility group box family member 4 OS=Bos taurus GN=TOX4
PE=2 SV=1
Length = 619
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 85 PKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEY 137
P P+KP+ Y + R +K QN + E+ KI+ MW L E+QK Y
Sbjct: 220 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVY 272
>sp|Q99PM1|TOX4_RAT TOX high mobility group box family member 4 OS=Rattus norvegicus
GN=Tox4 PE=2 SV=1
Length = 619
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 85 PKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEY 137
P P+KP+ Y + R +K QN + E+ KI+ MW L E+QK Y
Sbjct: 220 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVY 272
>sp|Q8BU11|TOX4_MOUSE TOX high mobility group box family member 4 OS=Mus musculus GN=Tox4
PE=1 SV=3
Length = 619
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 85 PKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEY 137
P P+KP+ Y + R +K QN + E+ KI+ MW L E+QK Y
Sbjct: 220 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVY 272
>sp|Q66JW3|TOX_MOUSE Thymocyte selection-associated high mobility group box protein TOX
OS=Mus musculus GN=Tox PE=1 SV=2
Length = 526
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 85 PKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEY 137
P P+KP+ Y + R +K QN + E+ KI+ MW L E+QK Y
Sbjct: 258 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVY 310
>sp|Q9NP66|HM20A_HUMAN High mobility group protein 20A OS=Homo sapiens GN=HMG20A PE=1 SV=1
Length = 347
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 13/94 (13%)
Query: 56 HQHCQRVSRRGNVSQKMLTAKTDGRGPKAP----KPPEKPLMPYMRYSRKVWDQVKAQNL 111
H+ QR S+RG S+ GR K P P+ PL Y+R+ + +Q++A+
Sbjct: 76 HEDEQR-SKRGGWSK--------GRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRP 126
Query: 112 DLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 145
++ EI +++G W LP ++K Y+++ +++K
Sbjct: 127 EVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDK 160
>sp|Q4IQX3|NHP6_GIBZE Non-histone chromosomal protein 6 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=NHP6 PE=3
SV=1
Length = 101
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 80 RGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEY 137
R K P P++ L YM ++ + + V+ +N + ++GK++G+ W+ L E Q+ Y
Sbjct: 16 RAKKDPNAPKRGLSAYMFFANEQRENVREENPGISFGQVGKLLGERWKALNEKQRAPY 73
>sp|P25979|UBF1A_XENLA Nucleolar transcription factor 1-A OS=Xenopus laevis GN=ubtf-a PE=2
SV=1
Length = 677
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 17/91 (18%)
Query: 67 NVSQKMLTAKTDGRGP-------KAPKPPEKPLMPYMRY---SRKVWDQVKAQ--NLDLK 114
+S+ +L A+ R P K P+ P+KPL PY R+ R + ++ + NLDL
Sbjct: 84 TLSELILDAEEHVRHPYKGKKLKKHPEFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDL- 142
Query: 115 LWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 145
KI+ + +++LPE +K +Y++D+++EK
Sbjct: 143 ----TKILSKKYKELPEKKKMKYIQDFQREK 169
>sp|Q7S045|NHP6_NEUCR Non-histone chromosomal protein 6 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=nhp-6 PE=3 SV=1
Length = 103
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 80 RGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEY 137
R K P P++ L YM ++ + + V+ +N + ++GKI+G+ W+ L + Q+ Y
Sbjct: 18 RAKKDPNAPKRGLSAYMFFANEQRENVREENPGVSFGQVGKILGERWKALSDKQRAPY 75
>sp|P25980|UBF1B_XENLA Nucleolar transcription factor 1-B OS=Xenopus laevis GN=ubtf-b PE=2
SV=1
Length = 701
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 10/68 (14%)
Query: 83 KAPKPPEKPLMPYMRY---SRKVWDQVKAQ--NLDLKLWEIGKIIGQMWRDLPEDQKTEY 137
K P+ P+KPL PY R+ R + ++ + NLDL KI+ + +++LPE +K +Y
Sbjct: 107 KHPEFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDL-----TKILSKKYKELPEKKKMKY 161
Query: 138 VEDYEQEK 145
++D+++EK
Sbjct: 162 IQDFQREK 169
>sp|Q4WY33|NHP6_ASPFU Non-histone chromosomal protein 6 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=nhp6
PE=3 SV=1
Length = 104
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 35/60 (58%)
Query: 80 RGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVE 139
R K P P++ L YM ++ + D+V+ +N + ++GK++G+ W+ L + ++ Y E
Sbjct: 17 RKKKDPNAPKRGLSAYMFFANENRDKVREENPGISFGQVGKMLGERWKALSDSERRPYEE 76
>sp|P0CO24|NHP6_CRYNJ Non-histone chromosomal protein 6 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=NHP6 PE=3 SV=1
Length = 116
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%)
Query: 69 SQKMLTAKTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRD 128
S+K + R K P P++ L YM + + +++K +N + ++GK++G WR+
Sbjct: 9 SKKSTASDAKKRTKKDPNKPKRALSAYMFFVQDYRERIKTENPEATFGDVGKLLGIKWRE 68
Query: 129 LPEDQKTEY 137
+ E++K Y
Sbjct: 69 MNENEKKPY 77
>sp|P0CO25|NHP6_CRYNB Non-histone chromosomal protein 6 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=NHP6 PE=3 SV=1
Length = 116
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%)
Query: 69 SQKMLTAKTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRD 128
S+K + R K P P++ L YM + + +++K +N + ++GK++G WR+
Sbjct: 9 SKKSTASDAKKRTKKDPNKPKRALSAYMFFVQDYRERIKTENPEATFGDVGKLLGIKWRE 68
Query: 129 LPEDQKTEY 137
+ E++K Y
Sbjct: 69 MNENEKKPY 77
>sp|Q9T012|HMG13_ARATH High mobility group B protein 13 OS=Arabidopsis thaliana GN=HMGB13
PE=2 SV=1
Length = 446
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 90 KPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 145
+P PY+ + + W++VK QN + E I+G W+ + ++K Y E Y+ +K
Sbjct: 131 RPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGISAEEKKPYEEKYQADK 186
>sp|P25976|UBF1_MOUSE Nucleolar transcription factor 1 OS=Mus musculus GN=Ubtf PE=1 SV=1
Length = 765
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 10/68 (14%)
Query: 83 KAPKPPEKPLMPYMRY---SRKVWDQVKAQ--NLDLKLWEIGKIIGQMWRDLPEDQKTEY 137
K P P+KPL PY R+ R + ++ + NLDL KI+ + +++LPE +K +Y
Sbjct: 107 KHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDL-----TKILSKKYKELPEKKKMKY 161
Query: 138 VEDYEQEK 145
++D+++EK
Sbjct: 162 IQDFQREK 169
>sp|P25977|UBF1_RAT Nucleolar transcription factor 1 OS=Rattus norvegicus GN=Ubtf PE=1
SV=1
Length = 764
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 10/68 (14%)
Query: 83 KAPKPPEKPLMPYMRY---SRKVWDQVKAQ--NLDLKLWEIGKIIGQMWRDLPEDQKTEY 137
K P P+KPL PY R+ R + ++ + NLDL KI+ + +++LPE +K +Y
Sbjct: 107 KHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDL-----TKILSKKYKELPEKKKMKY 161
Query: 138 VEDYEQEK 145
++D+++EK
Sbjct: 162 IQDFQREK 169
>sp|P17480|UBF1_HUMAN Nucleolar transcription factor 1 OS=Homo sapiens GN=UBTF PE=1 SV=1
Length = 764
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 10/68 (14%)
Query: 83 KAPKPPEKPLMPYMRY---SRKVWDQVKAQ--NLDLKLWEIGKIIGQMWRDLPEDQKTEY 137
K P P+KPL PY R+ R + ++ + NLDL KI+ + +++LPE +K +Y
Sbjct: 107 KHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDL-----TKILSKKYKELPEKKKMKY 161
Query: 138 VEDYEQEK 145
++D+++EK
Sbjct: 162 IQDFQREK 169
>sp|P11873|HMGC_TETTH High mobility group protein C OS=Tetrahymena thermophila PE=1 SV=1
Length = 100
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 33/53 (62%)
Query: 85 PKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEY 137
P PP++PL + + + ++QVK +N + K+ E+ +I + W+ + E +K +Y
Sbjct: 9 PAPPKRPLSAFFLFKQHNYEQVKKENPNAKITELTSMIAEKWKAVGEKEKKKY 61
>sp|Q9DC33|HM20A_MOUSE High mobility group protein 20A OS=Mus musculus GN=Hmg20a PE=2 SV=1
Length = 346
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 79 GRGPKAP----KPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQK 134
GR K P P+ PL Y+R+ + +Q++A+ ++ EI +++G W LP ++K
Sbjct: 89 GRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEK 148
Query: 135 TEYVEDYEQEK 145
Y+++ +++K
Sbjct: 149 QRYLDEADRDK 159
>sp|Q5ZKF4|HM20A_CHICK High mobility group protein 20A OS=Gallus gallus GN=HMG20A PE=2
SV=1
Length = 348
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 37/58 (63%)
Query: 88 PEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 145
P+ PL Y+R+ + +Q++A+ ++ EI +++G W LP ++K Y+++ +++K
Sbjct: 104 PKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKRRYLDEADRDK 161
>sp|Q9W602|SSRP1_XENLA FACT complex subunit SSRP1 OS=Xenopus laevis GN=ssrp1 PE=1 SV=1
Length = 693
Score = 39.7 bits (91), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 68 VSQKMLTAKTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWR 127
V QK K + + K P P++P+ YM + +++K++N + + ++ K G++W+
Sbjct: 521 VKQKKPRKKPEAKKTKDPGAPKRPMSAYMLWLNASREKIKSENPGISITDLSKKAGEIWK 580
Query: 128 DLPEDQKTEYVEDYEQEK-NLKASTKLASISRPT 160
++ D+K E+ E+ K + + + K + S PT
Sbjct: 581 NMSRDKKEEWDRRAEEAKRDYEKAMKEYNTSAPT 614
>sp|Q6CC79|NHP6_YARLI Non-histone chromosomal protein 6 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=NHP6 PE=3 SV=1
Length = 103
Score = 39.7 bits (91), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 85 PKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVE 139
P P++ L YM ++ D ++A N + ++GK +G+ W+ L + +K Y E
Sbjct: 22 PNAPKRALSAYMFFANDNRDAIRADNPGIAFGQVGKALGEKWKTLTDAEKVPYEE 76
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.128 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,701,185
Number of Sequences: 539616
Number of extensions: 4301138
Number of successful extensions: 22091
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 415
Number of HSP's that attempted gapping in prelim test: 20742
Number of HSP's gapped (non-prelim): 1585
length of query: 307
length of database: 191,569,459
effective HSP length: 117
effective length of query: 190
effective length of database: 128,434,387
effective search space: 24402533530
effective search space used: 24402533530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)