Query psy1937
Match_columns 307
No_of_seqs 298 out of 1165
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 20:06:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1937.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1937hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eqz_A High mobility group pro 99.8 1.6E-20 5.6E-25 145.4 9.3 80 76-155 4-85 (86)
2 2co9_A Thymus high mobility gr 99.8 2.6E-20 8.9E-25 148.9 9.9 80 77-156 7-86 (102)
3 2e6o_A HMG box-containing prot 99.8 1.5E-20 5.1E-25 146.0 8.0 77 79-155 9-85 (87)
4 1wgf_A Upstream binding factor 99.8 1.7E-20 5.7E-25 146.7 7.0 72 75-146 8-79 (90)
5 1k99_A Upstream binding factor 99.8 1E-20 3.4E-25 150.7 5.6 68 79-146 2-69 (99)
6 1hme_A High mobility group pro 99.8 3.7E-20 1.3E-24 140.1 8.0 75 82-156 1-75 (77)
7 2crj_A SWI/SNF-related matrix- 99.8 4.9E-20 1.7E-24 144.5 8.8 76 82-157 2-77 (92)
8 1hry_A Human SRY; DNA, DNA-bin 99.8 5.9E-20 2E-24 138.6 6.9 73 84-156 1-73 (76)
9 1aab_A High mobility group pro 99.8 4.1E-20 1.4E-24 142.0 5.3 78 82-159 2-81 (83)
10 2lhj_A High mobility group pro 99.8 4.3E-20 1.5E-24 146.2 4.2 81 76-156 11-93 (97)
11 1cg7_A Protein (NON histone pr 99.8 3E-20 1E-24 146.1 2.1 80 77-156 10-89 (93)
12 1j46_A SRY, sex-determining re 99.8 4.4E-19 1.5E-23 137.0 8.6 76 84-159 1-76 (85)
13 2cs1_A PMS1 protein homolog 1; 99.8 2.9E-19 9.9E-24 140.1 7.4 77 82-158 2-78 (92)
14 1wz6_A HMG-box transcription f 99.8 2.7E-19 9.3E-24 137.1 6.9 77 82-158 2-78 (82)
15 1wxl_A Single-strand recogniti 99.8 1.1E-18 3.7E-23 131.0 8.1 71 85-157 1-71 (73)
16 4euw_A Transcription factor SO 99.8 1.3E-18 4.5E-23 140.0 8.6 79 80-158 22-100 (106)
17 1i11_A Transcription factor SO 99.8 9.1E-19 3.1E-23 133.9 6.8 73 85-157 2-74 (81)
18 3f27_D Transcription factor SO 99.8 1E-18 3.5E-23 134.0 6.9 74 84-157 3-76 (83)
19 4a3n_A Transcription factor SO 99.8 6.6E-19 2.3E-23 130.8 5.6 70 86-155 1-70 (71)
20 2d7l_A WD repeat and HMG-box D 99.7 6.5E-19 2.2E-23 135.5 5.3 61 84-144 2-63 (81)
21 1gt0_D Transcription factor SO 99.7 1.8E-18 6.2E-23 131.8 7.6 74 86-159 1-74 (80)
22 2lef_A LEF-1 HMG, protein (lym 99.7 2.7E-18 9.2E-23 132.8 8.4 71 87-157 2-72 (86)
23 1ckt_A High mobility group 1 p 99.7 1.6E-18 5.5E-23 129.0 6.8 60 87-146 1-62 (71)
24 3nm9_A HMG-D, high mobility gr 99.7 1.6E-18 5.3E-23 130.1 6.7 68 86-155 2-69 (73)
25 3u2b_C Transcription factor SO 99.7 1.8E-18 6.1E-23 131.3 6.3 72 86-157 1-72 (79)
26 2gzk_A Sex-determining region 99.7 1.2E-17 4.1E-22 142.7 7.7 78 79-156 80-157 (159)
27 2yrq_A High mobility group pro 99.7 2.4E-17 8.3E-22 142.9 8.7 83 77-159 5-89 (173)
28 1v64_A Nucleolar transcription 99.7 2.4E-17 8.3E-22 133.1 6.8 77 78-158 7-84 (108)
29 2yrq_A High mobility group pro 99.7 4.1E-17 1.4E-21 141.4 8.1 78 79-156 93-170 (173)
30 3fgh_A Transcription factor A, 99.7 2E-17 6.8E-22 122.0 5.2 67 86-156 1-67 (67)
31 2yuk_A Myeloid/lymphoid or mix 99.7 1.3E-18 4.4E-23 136.3 -2.7 63 80-146 15-79 (90)
32 1l8y_A Upstream binding factor 99.7 1.5E-16 5.2E-21 124.6 7.7 73 86-159 3-75 (91)
33 2cto_A Novel protein; high mob 99.6 9.6E-17 3.3E-21 126.5 4.9 64 81-146 4-70 (93)
34 1v63_A Nucleolar transcription 99.6 3.7E-16 1.3E-20 124.7 7.6 73 84-158 5-77 (101)
35 3tmm_A Transcription factor A, 99.6 2.6E-16 8.9E-21 143.4 5.2 76 81-156 35-110 (238)
36 2gzk_A Sex-determining region 99.6 1E-14 3.5E-19 124.5 11.8 75 85-159 2-76 (159)
37 3tq6_A Transcription factor A, 99.6 1.3E-15 4.3E-20 136.8 6.0 74 84-157 6-79 (214)
38 3tq6_A Transcription factor A, 99.5 8.3E-15 2.8E-19 131.5 1.0 74 80-157 107-180 (214)
39 3tmm_A Transcription factor A, 99.4 1.4E-14 4.8E-19 131.9 0.3 74 80-157 139-212 (238)
40 3c3g_A Alpha/beta peptide with 76.6 4.5 0.00015 25.1 4.3 29 245-273 1-29 (33)
41 3c3f_A Alpha/beta peptide with 76.0 4.7 0.00016 25.2 4.3 30 244-273 1-30 (34)
42 2bni_A General control protein 75.4 4 0.00014 25.5 3.9 29 244-272 1-29 (34)
43 2oxj_A Hybrid alpha/beta pepti 74.8 5.3 0.00018 25.0 4.3 29 244-272 1-29 (34)
44 2wq1_A General control protein 73.1 6.2 0.00021 24.5 4.3 28 245-272 1-28 (33)
45 1kd8_B GABH BLL, GCN4 acid bas 73.0 10 0.00035 24.0 5.3 32 244-275 1-32 (36)
46 1uo4_A General control protein 70.2 6.4 0.00022 24.6 3.9 28 245-272 2-29 (34)
47 3m48_A General control protein 67.9 7 0.00024 24.3 3.7 28 245-272 1-28 (33)
48 1kd8_A GABH AIV, GCN4 acid bas 66.3 7 0.00024 24.7 3.5 30 244-273 1-30 (36)
49 2hy6_A General control protein 65.6 9 0.00031 23.9 3.9 29 244-272 1-29 (34)
50 4dci_A Uncharacterized protein 61.5 32 0.0011 28.6 7.8 61 243-303 35-111 (150)
51 2r2v_A GCN4 leucine zipper; co 52.2 26 0.00088 21.9 4.3 29 244-272 1-29 (34)
52 2qgu_A Probable signal peptide 46.4 15 0.0005 32.0 3.5 55 103-158 61-119 (211)
53 2dgc_A Protein (GCN4); basic d 44.2 34 0.0012 24.1 4.6 35 241-275 27-61 (63)
54 1nlw_A MAD protein, MAX dimeri 40.3 63 0.0021 23.7 5.7 51 225-275 16-71 (80)
55 2jo8_A Serine/threonine-protei 37.4 73 0.0025 21.7 5.1 27 258-284 21-47 (51)
56 1z0k_B FYVE-finger-containing 36.7 41 0.0014 24.4 4.0 60 206-271 7-66 (69)
57 1nkp_A C-MYC, MYC proto-oncoge 34.9 1.1E+02 0.0037 22.7 6.4 50 225-274 21-75 (88)
58 2yf2_A C4B binding protein; im 34.4 44 0.0015 23.1 3.7 40 225-274 16-57 (65)
59 3tnu_A Keratin, type I cytoske 33.7 1.8E+02 0.006 23.0 8.2 49 245-293 46-94 (131)
60 1z8u_A Alpha-hemoglobin stabil 33.1 1.2E+02 0.0041 23.2 6.2 68 217-286 3-93 (102)
61 3mq7_A Bone marrow stromal ant 31.3 1.2E+02 0.0042 24.1 6.3 39 243-281 70-108 (121)
62 3tnu_B Keratin, type II cytosk 30.3 2E+02 0.0068 22.6 8.2 47 246-292 45-91 (129)
63 2p2u_A HOST-nuclease inhibitor 23.2 2.8E+02 0.0096 22.9 7.7 52 244-298 23-74 (171)
64 1lq7_A Alpha3W; three helix bu 22.9 1.4E+02 0.0047 20.6 4.5 30 244-273 25-63 (67)
65 3mhp_C TIC62_peptide, ferredox 22.3 31 0.0011 20.1 1.0 11 88-98 2-12 (26)
66 3r84_A Mediator of RNA polymer 22.2 1.7E+02 0.0059 21.9 5.4 53 243-295 4-59 (86)
67 3m9b_A Proteasome-associated A 22.0 67 0.0023 28.9 3.6 55 237-302 47-101 (251)
68 3swk_A Vimentin; cytoskeleton, 21.3 1.9E+02 0.0066 21.3 5.6 37 246-282 2-38 (86)
69 1dh3_A Transcription factor CR 21.3 58 0.002 22.2 2.4 31 243-273 21-51 (55)
70 3f1i_H Hepatocyte growth facto 20.2 1.5E+02 0.0052 22.7 4.8 17 267-283 81-97 (98)
71 1ci6_A Transcription factor AT 20.2 2.2E+02 0.0076 19.6 6.8 33 243-275 22-54 (63)
72 1am9_A Srebp-1A, protein (ster 20.0 1.8E+02 0.0061 21.1 5.1 49 225-275 21-74 (82)
No 1
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.6e-20 Score=145.40 Aligned_cols=80 Identities=16% Similarity=0.290 Sum_probs=69.8
Q ss_pred ccCCCCCCCCCCCCCCccchhchhHHHHHHHHHHcCCCC--HHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhh
Q psy1937 76 KTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLK--LWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKL 153 (307)
Q Consensus 76 k~~~k~~kdp~~PKRPlsAy~lf~~e~r~~v~~e~P~~~--~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~ 153 (307)
+++++..+||++||||+||||+||+++|..|+.+||+++ +.||+++||++|++|++++|.+|+++|+.+++...-++.
T Consensus 4 g~~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~ 83 (86)
T 2eqz_A 4 GSSGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMK 83 (86)
T ss_dssp CCSSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566789999999999999999999999999999997 699999999999999999999999999999763222555
Q ss_pred hc
Q psy1937 154 AS 155 (307)
Q Consensus 154 ~y 155 (307)
+|
T Consensus 84 ~Y 85 (86)
T 2eqz_A 84 DY 85 (86)
T ss_dssp HH
T ss_pred Hc
Confidence 55
No 2
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=2.6e-20 Score=148.90 Aligned_cols=80 Identities=29% Similarity=0.424 Sum_probs=70.8
Q ss_pred cCCCCCCCCCCCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhhcc
Q psy1937 77 TDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASI 156 (307)
Q Consensus 77 ~~~k~~kdp~~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~y~ 156 (307)
++++..+||++||||+||||+||+++|..|+.+||++++.||+++||++|++|++++|++|.++|+.+++.+.-+|.+|.
T Consensus 7 ~~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~ 86 (102)
T 2co9_A 7 GKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYR 86 (102)
T ss_dssp CSCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999773333555554
No 3
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-20 Score=145.99 Aligned_cols=77 Identities=12% Similarity=0.258 Sum_probs=70.4
Q ss_pred CCCCCCCCCCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhhc
Q psy1937 79 GRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLAS 155 (307)
Q Consensus 79 ~k~~kdp~~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~y 155 (307)
++..+||++||||+||||+||+++|..|+.+||++++.||+++||++|++|++++|++|+++|+.+++.+.-.|.+|
T Consensus 9 ~~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Y 85 (87)
T 2e6o_A 9 TVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDC 85 (87)
T ss_dssp SCCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999987544466665
No 4
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.81 E-value=1.7e-20 Score=146.71 Aligned_cols=72 Identities=21% Similarity=0.434 Sum_probs=67.3
Q ss_pred cccCCCCCCCCCCCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHH
Q psy1937 75 AKTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKN 146 (307)
Q Consensus 75 ~k~~~k~~kdp~~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~ 146 (307)
+++.++..+||++||||+||||+||+++|..|+.+||++++.||+++||++|++|++++|++|+++|+.+++
T Consensus 8 k~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~ 79 (90)
T 1wgf_A 8 KPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKA 79 (90)
T ss_dssp SSCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred CCCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 344566788999999999999999999999999999999999999999999999999999999999999864
No 5
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.81 E-value=1e-20 Score=150.67 Aligned_cols=68 Identities=28% Similarity=0.606 Sum_probs=65.3
Q ss_pred CCCCCCCCCCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHH
Q psy1937 79 GRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKN 146 (307)
Q Consensus 79 ~k~~kdp~~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~ 146 (307)
+++.+||++||||+||||+||++.|..|+.+||++++.||+++||++|++||+++|++|.++|+.+++
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~ 69 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQ 69 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999976
No 6
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.81 E-value=3.7e-20 Score=140.11 Aligned_cols=75 Identities=20% Similarity=0.394 Sum_probs=68.4
Q ss_pred CCCCCCCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhhcc
Q psy1937 82 PKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASI 156 (307)
Q Consensus 82 ~kdp~~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~y~ 156 (307)
++||++||||+||||+|++++|..++.+||++++.+|+++||++|++||+++|.+|.++|+.+++...-++.+|.
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~ 75 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 75 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999999999999999999999999999999999999999999999999999764433666664
No 7
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.81 E-value=4.9e-20 Score=144.50 Aligned_cols=76 Identities=25% Similarity=0.468 Sum_probs=68.0
Q ss_pred CCCCCCCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhhccC
Q psy1937 82 PKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASIS 157 (307)
Q Consensus 82 ~kdp~~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~y~~ 157 (307)
.+||++||||+||||+||+++|..|+.+||++++.+|+++||++|++||+++|++|.++|+.+++...-+|.+|..
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~ 77 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQ 77 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5799999999999999999999999999999999999999999999999999999999999998733334455543
No 8
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.80 E-value=5.9e-20 Score=138.65 Aligned_cols=73 Identities=16% Similarity=0.317 Sum_probs=65.1
Q ss_pred CCCCCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhhcc
Q psy1937 84 APKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASI 156 (307)
Q Consensus 84 dp~~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~y~ 156 (307)
||++||||+||||+||+++|..|+.+||++++.+|+++||++|++||+++|++|.++|+.+++...-+|.+|.
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yk 73 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYK 73 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 6899999999999999999999999999999999999999999999999999999999999874444565553
No 9
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.79 E-value=4.1e-20 Score=142.02 Aligned_cols=78 Identities=15% Similarity=0.271 Sum_probs=70.4
Q ss_pred CCCCCCCCCCccchhchhHHHHHHHHHHcCCCC--HHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhhccCcc
Q psy1937 82 PKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLK--LWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASISRP 159 (307)
Q Consensus 82 ~kdp~~PKRPlsAy~lf~~e~r~~v~~e~P~~~--~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~y~~~k 159 (307)
.+||++||||+||||+||+++|..|+.+||+++ +.||+++||++|++||+++|.+|.++|+.+++...-++.+|...+
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~ 81 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPK 81 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 479999999999999999999999999999987 599999999999999999999999999999764333778887665
No 10
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.79 E-value=4.3e-20 Score=146.20 Aligned_cols=81 Identities=22% Similarity=0.464 Sum_probs=71.5
Q ss_pred ccCCCCCCCCCCCCCCccchhchhHHHHHHHHHHcCCCC--HHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhh
Q psy1937 76 KTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLK--LWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKL 153 (307)
Q Consensus 76 k~~~k~~kdp~~PKRPlsAy~lf~~e~r~~v~~e~P~~~--~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~ 153 (307)
+++++..+||++||||+||||+||+++|..|+.+||+++ +.||+++||++|++||+++|.+|+++|+.+++.+.-++.
T Consensus 11 ~~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 90 (97)
T 2lhj_A 11 RRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKA 90 (97)
T ss_dssp CCTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567789999999999999999999999999999999 999999999999999999999999999999763333555
Q ss_pred hcc
Q psy1937 154 ASI 156 (307)
Q Consensus 154 ~y~ 156 (307)
+|.
T Consensus 91 ~y~ 93 (97)
T 2lhj_A 91 EYA 93 (97)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 11
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.78 E-value=3e-20 Score=146.07 Aligned_cols=80 Identities=26% Similarity=0.475 Sum_probs=70.7
Q ss_pred cCCCCCCCCCCCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhhcc
Q psy1937 77 TDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASI 156 (307)
Q Consensus 77 ~~~k~~kdp~~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~y~ 156 (307)
+.++..+||++||||+||||+||+++|..|+.+||++++.||+++||++|++||+++|.+|.++|+.+++...-++.+|.
T Consensus 10 ~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y~ 89 (93)
T 1cg7_A 10 RTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYN 89 (93)
T ss_dssp CCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHHH
T ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566789999999999999999999999999999999999999999999999999999999999999763222555554
No 12
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.78 E-value=4.4e-19 Score=137.02 Aligned_cols=76 Identities=18% Similarity=0.346 Sum_probs=68.7
Q ss_pred CCCCCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhhccCcc
Q psy1937 84 APKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASISRP 159 (307)
Q Consensus 84 dp~~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~y~~~k 159 (307)
.|++||||+||||+||+++|..|+.+||++++.||+++||++|++||+++|++|.++|+.+++.+.-+|.+|.-.-
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p 76 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP 76 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccCC
Confidence 3789999999999999999999999999999999999999999999999999999999999875444677776544
No 13
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.9e-19 Score=140.09 Aligned_cols=77 Identities=18% Similarity=0.253 Sum_probs=68.2
Q ss_pred CCCCCCCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhhccCc
Q psy1937 82 PKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASISR 158 (307)
Q Consensus 82 ~kdp~~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~y~~~ 158 (307)
..+|++||||+||||+||+++|..|+.+||++++.||+++||++|++|++++|++|.++|+.+|+...-++..|...
T Consensus 2 ~~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~ 78 (92)
T 2cs1_A 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQ 78 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999999999999999999999999999999876333356666543
No 14
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.77 E-value=2.7e-19 Score=137.12 Aligned_cols=77 Identities=14% Similarity=0.260 Sum_probs=68.6
Q ss_pred CCCCCCCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhhccCc
Q psy1937 82 PKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASISR 158 (307)
Q Consensus 82 ~kdp~~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~y~~~ 158 (307)
..+|++||||+||||+||+++|..|+.+||++++.+|+++||++|++||+++|++|.++|+.+++...-+|.+|...
T Consensus 2 ~~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~ 78 (82)
T 1wz6_A 2 SSGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSG 78 (82)
T ss_dssp CSSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcC
Confidence 35789999999999999999999999999999999999999999999999999999999999976333366666543
No 15
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.76 E-value=1.1e-18 Score=131.01 Aligned_cols=71 Identities=20% Similarity=0.376 Sum_probs=63.7
Q ss_pred CCCCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhhccC
Q psy1937 85 PKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASIS 157 (307)
Q Consensus 85 p~~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~y~~ 157 (307)
|++||||+||||+||+++|..|+.+||++++.||+++||++|++| ++|.+|+++|+.+++...-++.+|..
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~ 71 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKP 71 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTT
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 789999999999999999999999999999999999999999999 89999999999997633335666643
No 16
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=140.00 Aligned_cols=79 Identities=20% Similarity=0.350 Sum_probs=66.2
Q ss_pred CCCCCCCCCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhhccCc
Q psy1937 80 RGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASISR 158 (307)
Q Consensus 80 k~~kdp~~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~y~~~ 158 (307)
...++|+.||||+||||+||+++|+.|+.++|++++.+|+++||++|+.|++++|++|.++|+.+++...-+|.+|.-.
T Consensus 22 ~~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky~ 100 (106)
T 4euw_A 22 QSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQ 100 (106)
T ss_dssp ------CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC-
T ss_pred hccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCcC
Confidence 3467889999999999999999999999999999999999999999999999999999999999987444466666543
No 17
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.75 E-value=9.1e-19 Score=133.88 Aligned_cols=73 Identities=15% Similarity=0.269 Sum_probs=64.7
Q ss_pred CCCCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhhccC
Q psy1937 85 PKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASIS 157 (307)
Q Consensus 85 p~~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~y~~ 157 (307)
++.||||+||||+||+++|..|+.+||++++.||+++||++|++||+++|++|.++|+.+++.+.-+|.+|.-
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky 74 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKY 74 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC--
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCee
Confidence 4679999999999999999999999999999999999999999999999999999999998744446766654
No 18
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.75 E-value=1e-18 Score=133.99 Aligned_cols=74 Identities=20% Similarity=0.354 Sum_probs=64.2
Q ss_pred CCCCCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhhccC
Q psy1937 84 APKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASIS 157 (307)
Q Consensus 84 dp~~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~y~~ 157 (307)
.++.||||+||||+||+++|+.|+.+||++++.||+++||++|++|++++|.+|.++|+.+++.+.-+|.+|.-
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky 76 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKY 76 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCee
Confidence 35689999999999999999999999999999999999999999999999999999999998744446666654
No 19
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.75 E-value=6.6e-19 Score=130.83 Aligned_cols=70 Identities=21% Similarity=0.404 Sum_probs=59.4
Q ss_pred CCCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhhc
Q psy1937 86 KPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLAS 155 (307)
Q Consensus 86 ~~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~y 155 (307)
+.||||+||||+||+++|+.++.+||++++.+|+++||++|++||+++|.+|.++|+.+++.+.-+|.+|
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Y 70 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNY 70 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCc
Confidence 4689999999999999999999999999999999999999999999999999999999976443355555
No 20
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=6.5e-19 Score=135.49 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=59.1
Q ss_pred CCCCCCCCccchhchhHHHHHHHHHHcCCCC-HHHHHHHHHhhccCCChHHhHHHHHHHHHH
Q psy1937 84 APKPPEKPLMPYMRYSRKVWDQVKAQNLDLK-LWEIGKIIGQMWRDLPEDQKTEYVEDYEQE 144 (307)
Q Consensus 84 dp~~PKRPlsAy~lf~~e~r~~v~~e~P~~~-~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~ 144 (307)
++++||||+||||+||+++|..|+.+||+++ +.||+++||++|++|++++|++|+++|+.+
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d 63 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGE 63 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999998 999999999999999999999999999876
No 21
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.75 E-value=1.8e-18 Score=131.80 Aligned_cols=74 Identities=22% Similarity=0.409 Sum_probs=66.3
Q ss_pred CCCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhhccCcc
Q psy1937 86 KPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASISRP 159 (307)
Q Consensus 86 ~~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~y~~~k 159 (307)
+.||||+||||+||+++|..|+.+||++++.||+++||++|++||+++|.+|.++|+.+++...-+|.+|.-.-
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p 74 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRP 74 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccCC
Confidence 46999999999999999999999999999999999999999999999999999999999774444666766443
No 22
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.75 E-value=2.7e-18 Score=132.78 Aligned_cols=71 Identities=23% Similarity=0.363 Sum_probs=65.0
Q ss_pred CCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhhccC
Q psy1937 87 PPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASIS 157 (307)
Q Consensus 87 ~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~y~~ 157 (307)
.||||+||||+||+++|..|+.+||++++.||+++||++|++||+++|++|.++|+.+++.+.-+|.+|..
T Consensus 2 ~pKRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~ 72 (86)
T 2lef_A 2 HIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSA 72 (86)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccC
Confidence 59999999999999999999999999999999999999999999999999999999998744446777663
No 23
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.75 E-value=1.6e-18 Score=128.96 Aligned_cols=60 Identities=15% Similarity=0.343 Sum_probs=57.6
Q ss_pred CCCCCccchhchhHHHHHHHHHHcCCCCH--HHHHHHHHhhccCCChHHhHHHHHHHHHHHH
Q psy1937 87 PPEKPLMPYMRYSRKVWDQVKAQNLDLKL--WEIGKIIGQMWRDLPEDQKTEYVEDYEQEKN 146 (307)
Q Consensus 87 ~PKRPlsAy~lf~~e~r~~v~~e~P~~~~--~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~ 146 (307)
+||||+||||+||+++|+.++.+||++++ .||+++||++|++||+++|.+|.++|+.+|+
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~ 62 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA 62 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHH
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999975 9999999999999999999999999999976
No 24
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.75 E-value=1.6e-18 Score=130.13 Aligned_cols=68 Identities=22% Similarity=0.418 Sum_probs=61.0
Q ss_pred CCCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhhc
Q psy1937 86 KPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLAS 155 (307)
Q Consensus 86 ~~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~y 155 (307)
++||||+||||+||+++|+.|+.+||++++.||+++||++|++|++ |++|+++|+++++...-++.+|
T Consensus 2 ~~PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y 69 (73)
T 3nm9_A 2 DKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEF 69 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999998 9999999999976332245554
No 25
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.74 E-value=1.8e-18 Score=131.31 Aligned_cols=72 Identities=18% Similarity=0.298 Sum_probs=65.0
Q ss_pred CCCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhhccC
Q psy1937 86 KPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASIS 157 (307)
Q Consensus 86 ~~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~y~~ 157 (307)
+.||||+||||+||+++|+.|+.+||++++.+|+++||++|++||+++|.+|.++|+.+++.+.-+|.+|.-
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky 72 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKY 72 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCee
Confidence 468999999999999999999999999999999999999999999999999999999998744446666653
No 26
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.71 E-value=1.2e-17 Score=142.72 Aligned_cols=78 Identities=19% Similarity=0.381 Sum_probs=69.0
Q ss_pred CCCCCCCCCCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhhcc
Q psy1937 79 GRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASI 156 (307)
Q Consensus 79 ~k~~kdp~~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~y~ 156 (307)
++..+||++||||+||||+||.++|..|+.+||++++.||+++||++|++||+++|++|.++|+.+++...-++.+|.
T Consensus 80 kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~ 157 (159)
T 2gzk_A 80 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 157 (159)
T ss_dssp GGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345789999999999999999999999999999999999999999999999999999999999999763222555553
No 27
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2.4e-17 Score=142.88 Aligned_cols=83 Identities=17% Similarity=0.328 Sum_probs=73.8
Q ss_pred cCCCCCCCCCCCCCCccchhchhHHHHHHHHHHcCC--CCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhh
Q psy1937 77 TDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLD--LKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLA 154 (307)
Q Consensus 77 ~~~k~~kdp~~PKRPlsAy~lf~~e~r~~v~~e~P~--~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~ 154 (307)
+.++..+||++||||+||||+||+++|..|+.+||+ +++.||+++||++|++||++||.+|.++|+.+++...-++.+
T Consensus 5 ~~k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (173)
T 2yrq_A 5 SSGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKT 84 (173)
T ss_dssp SCSSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445667899999999999999999999999999999 589999999999999999999999999999997633337788
Q ss_pred ccCcc
Q psy1937 155 SISRP 159 (307)
Q Consensus 155 y~~~k 159 (307)
|...+
T Consensus 85 y~~~~ 89 (173)
T 2yrq_A 85 YIPPK 89 (173)
T ss_dssp CCCCC
T ss_pred hhhhh
Confidence 87665
No 28
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.69 E-value=2.4e-17 Score=133.15 Aligned_cols=77 Identities=21% Similarity=0.261 Sum_probs=66.7
Q ss_pred CCCCCCCCCCC-CCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhhcc
Q psy1937 78 DGRGPKAPKPP-EKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASI 156 (307)
Q Consensus 78 ~~k~~kdp~~P-KRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~y~ 156 (307)
+.++.+||++| |||+||||+||+++|..++ ++++.||+++||++|++|++++|++|.++|+.+++.+.-++.+|.
T Consensus 7 ~~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~ 82 (108)
T 1v64_A 7 GQLKDKFDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFL 82 (108)
T ss_dssp CCSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567899999 9999999999999999887 789999999999999999999999999999999763333666665
Q ss_pred Cc
Q psy1937 157 SR 158 (307)
Q Consensus 157 ~~ 158 (307)
..
T Consensus 83 ~~ 84 (108)
T 1v64_A 83 ES 84 (108)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 29
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=4.1e-17 Score=141.42 Aligned_cols=78 Identities=19% Similarity=0.381 Sum_probs=69.6
Q ss_pred CCCCCCCCCCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhhcc
Q psy1937 79 GRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASI 156 (307)
Q Consensus 79 ~k~~kdp~~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~y~ 156 (307)
++..+||++||||+||||+||+++|..|+.+||++++.||+++||++|++||+++|++|.++|+.+++.+.-+|.+|.
T Consensus 93 kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~ 170 (173)
T 2yrq_A 93 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 170 (173)
T ss_dssp SCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455679999999999999999999999999999999999999999999999999999999999999763333555554
No 30
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.68 E-value=2e-17 Score=122.01 Aligned_cols=67 Identities=16% Similarity=0.335 Sum_probs=57.4
Q ss_pred CCCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhhcc
Q psy1937 86 KPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASI 156 (307)
Q Consensus 86 ~~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~y~ 156 (307)
++||||+||||+||+++|..++..+| .||+++||++|++||+++|.+|.++|+.+++...-++.+|+
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~ 67 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWA 67 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 57999999999999999999987776 69999999999999999999999999999763222555553
No 31
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.67 E-value=1.3e-18 Score=136.33 Aligned_cols=63 Identities=16% Similarity=0.314 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCCccchhchhHHHHHHHHHHcCCCC--HHHHHHHHHhhccCCChHHhHHHHHHHHHHHH
Q psy1937 80 RGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLK--LWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKN 146 (307)
Q Consensus 80 k~~kdp~~PKRPlsAy~lf~~e~r~~v~~e~P~~~--~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~ 146 (307)
+..+||++||||+||||+||+++|++|+.+||+++ +.||+ ++|++|++++|+||+++|+.+|+
T Consensus 15 k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~ 79 (90)
T 2yuk_A 15 KWEKEEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRKASSQERAPYVQKARDNRA 79 (90)
T ss_dssp HHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHH
T ss_pred hccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHH
Confidence 44679999999999999999999999999999999 99998 99999999999999999999976
No 32
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.66 E-value=1.5e-16 Score=124.65 Aligned_cols=73 Identities=14% Similarity=0.187 Sum_probs=64.8
Q ss_pred CCCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhhccCcc
Q psy1937 86 KPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASISRP 159 (307)
Q Consensus 86 ~~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~y~~~k 159 (307)
+.||||+|||++|+++.|..++.++|+ ++.||+|+||++|++|+++||++|+++|+.+|+...-++.+|....
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~ 75 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPP 75 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 579999999999999999999999999 9999999999999999999999999999999763333666776443
No 33
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=9.6e-17 Score=126.46 Aligned_cols=64 Identities=16% Similarity=0.275 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHH---HhhccCCChHHhHHHHHHHHHHHH
Q psy1937 81 GPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKII---GQMWRDLPEDQKTEYVEDYEQEKN 146 (307)
Q Consensus 81 ~~kdp~~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~l---g~~Wk~Ls~eeK~~Y~~~ae~~K~ 146 (307)
...++++||||+||||+||+++|++|+.+ ++++.||+++| |++|++|+++||++|+++|+++|+
T Consensus 4 ~~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~ 70 (93)
T 2cto_A 4 GSSGMPNRKASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRA 70 (93)
T ss_dssp CCCCCCCCCSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 45578899999999999999999999998 89999999999 999999999999999999999865
No 34
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.63 E-value=3.7e-16 Score=124.68 Aligned_cols=73 Identities=19% Similarity=0.291 Sum_probs=59.9
Q ss_pred CCCCCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhhccCc
Q psy1937 84 APKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASISR 158 (307)
Q Consensus 84 dp~~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~y~~~ 158 (307)
...+||||+||||+||++++. ..++|++++.||+++||++|++|+++||++|+++|+.+|+.+.-++.+|...
T Consensus 5 ~~~~PKrP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~ 77 (101)
T 1v63_A 5 SSGPKKPPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKS 77 (101)
T ss_dssp CCSSCCCCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457899999999999999975 2244568899999999999999999999999999999976333355666543
No 35
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.61 E-value=2.6e-16 Score=143.42 Aligned_cols=76 Identities=30% Similarity=0.451 Sum_probs=68.4
Q ss_pred CCCCCCCCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhhcc
Q psy1937 81 GPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASI 156 (307)
Q Consensus 81 ~~kdp~~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~y~ 156 (307)
..++|++||||+||||+||+++|..|+.+||++++.||+++||++|+.|+++||.+|+++|+.+++...-++.+|.
T Consensus 35 s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~ 110 (238)
T 3tmm_A 35 SSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFK 110 (238)
T ss_dssp CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999999999999999999999999763333566665
No 36
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.58 E-value=1e-14 Score=124.47 Aligned_cols=75 Identities=17% Similarity=0.317 Sum_probs=68.4
Q ss_pred CCCCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhhccCcc
Q psy1937 85 PKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASISRP 159 (307)
Q Consensus 85 p~~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~y~~~k 159 (307)
|+.||||+||||+|+.+.|.+|+.+||++++.||+++||++|++||+++|.+|.++|+.+++...-+|..|...+
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~k 76 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRK 76 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCCC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhcccccc
Confidence 578999999999999999999999999999999999999999999999999999999999775444777787655
No 37
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.58 E-value=1.3e-15 Score=136.79 Aligned_cols=74 Identities=31% Similarity=0.468 Sum_probs=66.4
Q ss_pred CCCCCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhhccC
Q psy1937 84 APKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASIS 157 (307)
Q Consensus 84 dp~~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~y~~ 157 (307)
.|++||||+||||+||+++|..|+.+||++++.||+++||++|++||+++|.+|+++|+.+++...-++.+|..
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~ 79 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKE 79 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcc
Confidence 46789999999999999999999999999999999999999999999999999999999997633335666653
No 38
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.45 E-value=8.3e-15 Score=131.47 Aligned_cols=74 Identities=15% Similarity=0.295 Sum_probs=62.1
Q ss_pred CCCCCCCCCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhhccC
Q psy1937 80 RGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASIS 157 (307)
Q Consensus 80 k~~kdp~~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~y~~ 157 (307)
+..+||++||||+||||+||+++|..++.++|+ ||+++||++|++|++++|++|+++|+.+++...-++.+|..
T Consensus 107 k~~kdp~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 180 (214)
T 3tq6_A 107 KELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 180 (214)
T ss_dssp HHHHHTTCCCCCCCHHHHHHHHHTTTSSCSSHH----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCcccccchhhhhHHHHHHhhccCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999998766654 99999999999999999999999999997632225555543
No 39
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.42 E-value=1.4e-14 Score=131.94 Aligned_cols=74 Identities=15% Similarity=0.295 Sum_probs=62.1
Q ss_pred CCCCCCCCCCCCccchhchhHHHHHHHHHHcCCCCHHHHHHHHHhhccCCChHHhHHHHHHHHHHHHHHHhhhhhccC
Q psy1937 80 RGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASIS 157 (307)
Q Consensus 80 k~~kdp~~PKRPlsAy~lf~~e~r~~v~~e~P~~~~~eisk~lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y~y~~y~~ 157 (307)
+..+||++||||+||||+||+++|..++.++|+ +|+++||++|++|++++|++|+++|+.+++...-++.+|..
T Consensus 139 k~~kdp~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 212 (238)
T 3tmm_A 139 KELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 212 (238)
T ss_dssp HHHHHTTCCCCCCCHHHHHHHHHTTTSCCSSHH----HHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCCCCCcHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999998766654 99999999999999999999999999997622224555543
No 40
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=76.64 E-value=4.5 Score=25.14 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1937 245 RMQVLKRQVQSLTMHQKKLEAELQQIEEK 273 (307)
Q Consensus 245 r~~~l~~~~~sL~~hq~kle~el~~~e~~ 273 (307)
||.-|...|+.|..--..|+.|+..+++-
T Consensus 1 RMnQLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 1 RMKXIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 78999999999999999999999988753
No 41
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=75.96 E-value=4.7 Score=25.15 Aligned_cols=30 Identities=17% Similarity=0.265 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1937 244 NRMQVLKRQVQSLTMHQKKLEAELQQIEEK 273 (307)
Q Consensus 244 ~r~~~l~~~~~sL~~hq~kle~el~~~e~~ 273 (307)
+||.-|...|+.|..--+.|+.|+..+++-
T Consensus 1 eRMnQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 1 XRMXQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 489999999999999999999999988753
No 42
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=75.43 E-value=4 Score=25.53 Aligned_cols=29 Identities=17% Similarity=0.384 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1937 244 NRMQVLKRQVQSLTMHQKKLEAELQQIEE 272 (307)
Q Consensus 244 ~r~~~l~~~~~sL~~hq~kle~el~~~e~ 272 (307)
+||.-|...|+.|..--..||.|+..|++
T Consensus 1 eRMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 1 XRMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 48999999999999999999999998875
No 43
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=74.78 E-value=5.3 Score=24.97 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1937 244 NRMQVLKRQVQSLTMHQKKLEAELQQIEE 272 (307)
Q Consensus 244 ~r~~~l~~~~~sL~~hq~kle~el~~~e~ 272 (307)
+||.-|...|..|..--+.|+.|+..+++
T Consensus 1 eRMnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 1 XRMXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 48999999999999999999999998875
No 44
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=73.12 E-value=6.2 Score=24.49 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1937 245 RMQVLKRQVQSLTMHQKKLEAELQQIEE 272 (307)
Q Consensus 245 r~~~l~~~~~sL~~hq~kle~el~~~e~ 272 (307)
||.-|...|+.|......|+.|+..+.+
T Consensus 1 RMnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 1 RMKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7899999999999999999999988764
No 45
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=72.96 E-value=10 Score=23.99 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1937 244 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFE 275 (307)
Q Consensus 244 ~r~~~l~~~~~sL~~hq~kle~el~~~e~~~~ 275 (307)
+||.-|...|+.|...-..|+.|+..+++---
T Consensus 1 eRMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 48999999999999999999999998876543
No 46
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=70.24 E-value=6.4 Score=24.64 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1937 245 RMQVLKRQVQSLTMHQKKLEAELQQIEE 272 (307)
Q Consensus 245 r~~~l~~~~~sL~~hq~kle~el~~~e~ 272 (307)
||.-|...|+.|..--..|+.|+..+++
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8999999999999999999999998865
No 47
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=67.94 E-value=7 Score=24.31 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1937 245 RMQVLKRQVQSLTMHQKKLEAELQQIEE 272 (307)
Q Consensus 245 r~~~l~~~~~sL~~hq~kle~el~~~e~ 272 (307)
||.-|...|..|..--..|+.|+..+.+
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 7888999999999999999999988764
No 48
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=66.29 E-value=7 Score=24.73 Aligned_cols=30 Identities=20% Similarity=0.373 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1937 244 NRMQVLKRQVQSLTMHQKKLEAELQQIEEK 273 (307)
Q Consensus 244 ~r~~~l~~~~~sL~~hq~kle~el~~~e~~ 273 (307)
+||.-|...|..|..-...|+.|+..+++-
T Consensus 1 eRMnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 1 XEVKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 488999999999999999999999887653
No 49
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=65.60 E-value=9 Score=23.92 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1937 244 NRMQVLKRQVQSLTMHQKKLEAELQQIEE 272 (307)
Q Consensus 244 ~r~~~l~~~~~sL~~hq~kle~el~~~e~ 272 (307)
+||.-|...|+.|...-..|+.|+..+.+
T Consensus 1 ~RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 1 MKVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 48999999999999999999999988865
No 50
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=61.50 E-value=32 Score=28.60 Aligned_cols=61 Identities=10% Similarity=0.213 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHhHHhhhhHHHHHHHHhhhccCCCCC
Q psy1937 243 TNRMQVLKRQVQSLTMHQKKLEAELQ----------------QIEEKFEAKKRKFVESSEQFQEELKKEKASCSENE 303 (307)
Q Consensus 243 ~~r~~~l~~~~~sL~~hq~kle~el~----------------~~e~~~~~kk~~~~~~s~~f~~~~~~~~~~~~~~~ 303 (307)
.+.+.-|-++.+.|..-.+++.+|+. .+...|+.++.++.+--..+...|..+-.+.++.|
T Consensus 35 ~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~qv~~L~lGsE 111 (150)
T 4dci_A 35 SNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQVRELEMDQI 111 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCE
Confidence 34566666777777777777766554 47789999999999999999999999887777654
No 51
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=52.22 E-value=26 Score=21.87 Aligned_cols=29 Identities=7% Similarity=0.209 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1937 244 NRMQVLKRQVQSLTMHQKKLEAELQQIEE 272 (307)
Q Consensus 244 ~r~~~l~~~~~sL~~hq~kle~el~~~e~ 272 (307)
.||.-|-..|+.|...-.-|+.|+..+.+
T Consensus 1 ~RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 1 MKLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 47899999999999999999999988765
No 52
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=46.37 E-value=15 Score=31.96 Aligned_cols=55 Identities=9% Similarity=0.255 Sum_probs=37.9
Q ss_pred HHHHHHH-cCCCCHHHHHHH-HHhhccCCChHHhHHHHHHHHHHHHHHHh--hhhhccCc
Q psy1937 103 WDQVKAQ-NLDLKLWEIGKI-IGQMWRDLPEDQKTEYVEDYEQEKNLKAS--TKLASISR 158 (307)
Q Consensus 103 r~~v~~e-~P~~~~~eisk~-lg~~Wk~Ls~eeK~~Y~~~ae~~K~~k~y--~y~~y~~~ 158 (307)
+..|... .|-..+..|++. ||.-|+.+|+++++.|.+....-- ...| ....|...
T Consensus 61 ~~~v~~~l~p~~D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L-~~tY~~~l~~y~~q 119 (211)
T 2qgu_A 61 FQLVDQKIVPRADFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLL-IRTYAGALANVRNQ 119 (211)
T ss_dssp HHHHHHHTGGGBCHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHH-HHHHHHHHHTCSSC
T ss_pred HHHHHHHhhhhcCHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHH-HHHHHHHHHhhCCC
Confidence 3444433 477888888876 689999999999999998876532 3445 33444433
No 53
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=44.21 E-value=34 Score=24.07 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1937 241 VTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFE 275 (307)
Q Consensus 241 ~~~~r~~~l~~~~~sL~~hq~kle~el~~~e~~~~ 275 (307)
...+++..|..+|..|..--..|..++..|.+...
T Consensus 27 RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 27 RKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34677888888888888888888888888876554
No 54
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=40.29 E-value=63 Score=23.69 Aligned_cols=51 Identities=12% Similarity=0.216 Sum_probs=26.8
Q ss_pred HHhhhcc--cCCCCcchhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1937 225 INEIFSD--SVVPDVRSVVTTNRMQVLK---RQVQSLTMHQKKLEAELQQIEEKFE 275 (307)
Q Consensus 225 ~~Eifs~--~~v~d~rs~~~~~r~~~l~---~~~~sL~~hq~kle~el~~~e~~~~ 275 (307)
|++.|.. .+||.+..--...+..+|+ .-+..|.....+|..|+.++..+.+
T Consensus 16 lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~ 71 (80)
T 1nlw_A 16 LRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQR 71 (80)
T ss_dssp HHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665 6777654333333445555 3344455555555555555554444
No 55
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=37.44 E-value=73 Score=21.67 Aligned_cols=27 Identities=19% Similarity=0.530 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhh
Q psy1937 258 MHQKKLEAELQQIEEKFEAKKRKFVES 284 (307)
Q Consensus 258 ~hq~kle~el~~~e~~~~~kk~~~~~~ 284 (307)
.-...+|.||..+..+|+.|.+=+++.
T Consensus 21 ~Ld~~Me~Ei~elr~RY~~KRqPIldA 47 (51)
T 2jo8_A 21 ALDPMMEQEIEEIRQKYQSKRQPILDA 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHHHHHhHhhHHHH
Confidence 334567899999999999998887765
No 56
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=36.69 E-value=41 Score=24.38 Aligned_cols=60 Identities=15% Similarity=0.240 Sum_probs=43.2
Q ss_pred CCCccccccccccccchhhHHhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1937 206 DGYSVKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIE 271 (307)
Q Consensus 206 dg~S~k~~a~~Rf~rNH~l~~Eifs~~~v~d~rs~~~~~r~~~l~~~~~sL~~hq~kle~el~~~e 271 (307)
+|-++...+...-.-.|.|+.-||- +++.+.++|.+-=-..|..|..-.+.|+.|+..++
T Consensus 7 ~gW~~~~~~~~~~~~~dPL~EQ~~~------I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 7 EGWLPLSGGQGQSEDSDPLLQQIHN------ITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp CCBCCCSSTTCSCCCSSHHHHHHHH------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCcccccccccccCCcHHHHHHH------HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 5666665543333334677777774 78888888877777888888888888888887765
No 57
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=34.87 E-value=1.1e+02 Score=22.74 Aligned_cols=50 Identities=16% Similarity=0.309 Sum_probs=25.1
Q ss_pred HHhhhcc--cCCCCcchhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1937 225 INEIFSD--SVVPDVRSVVTTNRMQVLK---RQVQSLTMHQKKLEAELQQIEEKF 274 (307)
Q Consensus 225 ~~Eifs~--~~v~d~rs~~~~~r~~~l~---~~~~sL~~hq~kle~el~~~e~~~ 274 (307)
|++-|.. .+||.+..--...+..+|. .-++.|......|+.++..++.+.
T Consensus 21 ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n 75 (88)
T 1nkp_A 21 LKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRR 75 (88)
T ss_dssp HHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777765 6777654333344455555 233444444444444444444333
No 58
>2yf2_A C4B binding protein; immune system, complement system; 2.24A {Gallus gallus}
Probab=34.45 E-value=44 Score=23.10 Aligned_cols=40 Identities=33% Similarity=0.638 Sum_probs=26.9
Q ss_pred HHhhhcccCCCC--cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1937 225 INEIFSDSVVPD--VRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKF 274 (307)
Q Consensus 225 ~~Eifs~~~v~d--~rs~~~~~r~~~l~~~~~sL~~hq~kle~el~~~e~~~ 274 (307)
|+.+.+|+-||- +|++. .++.|-.-.+||+.||..+-..|
T Consensus 16 iqsvv~DC~~P~~~~rTLL----------Ei~KL~LEIQKL~~EL~glskef 57 (65)
T 2yf2_A 16 IQSVVSDCHVPTEDVKTLL----------EIRKLFLEIQKLKVELQGLSKEF 57 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHH----------HHHHHHHHHHHHHHHHcchhHHH
Confidence 888888887774 44433 34566666777888877776554
No 59
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=33.67 E-value=1.8e+02 Score=23.00 Aligned_cols=49 Identities=22% Similarity=0.277 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHH
Q psy1937 245 RMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELK 293 (307)
Q Consensus 245 r~~~l~~~~~sL~~hq~kle~el~~~e~~~~~kk~~~~~~s~~f~~~~~ 293 (307)
.++.|.-++++|......||..|..++.+++.....+...-...-.+|.
T Consensus 46 ~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~ 94 (131)
T 3tnu_A 46 TMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLA 94 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777887778888888888888887765555444333444443
No 60
>1z8u_A Alpha-hemoglobin stabilizing protein; alpha haemoglobin, AHSP, oxidation, interaction, electron transport; HET: HEM; 2.40A {Homo sapiens} SCOP: a.7.11.1 PDB: 1y01_A* 1w0b_A 3ovu_A* 1w09_A 1w0a_A 3ia3_A* 1xzy_A
Probab=33.08 E-value=1.2e+02 Score=23.16 Aligned_cols=68 Identities=25% Similarity=0.374 Sum_probs=45.2
Q ss_pred ccccchhhHHh-------hhcccCCCCcchhhhHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHH
Q psy1937 217 RYLRNHRLINE-------IFSDSVVPDVRSVVTTNRMQVLKRQVQSL----------------TMHQKKLEAELQQIEEK 273 (307)
Q Consensus 217 Rf~rNH~l~~E-------ifs~~~v~d~rs~~~~~r~~~l~~~~~sL----------------~~hq~kle~el~~~e~~ 273 (307)
.++-|..||+- +++.-|++|+ ++..+-|.++=+.|=++ ...+++|.+||.-+-.-
T Consensus 3 ~lqsNkDlIst~ikeFnvLLnQQvF~~~--~i~ee~MvtvV~DWvnfYinyy~~~~~GeqqEqdrAlqel~qeL~tl~~p 80 (102)
T 1z8u_A 3 LLKANKDLISAGLKEFSVLLNQQVFNDA--LVSEEDMVTVVEDWMNFYINYYRQQVTGEPQERDKALQELRQELNTLANP 80 (102)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCGGGC--CCCHHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHHHhhcccCCC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhH
Confidence 35566666542 3444444453 35556677777776544 45778899999999999
Q ss_pred HHHHHhHHhhhhH
Q psy1937 274 FEAKKRKFVESSE 286 (307)
Q Consensus 274 ~~~kk~~~~~~s~ 286 (307)
|=.|=|-|+.+.|
T Consensus 81 FL~KYR~fLks~E 93 (102)
T 1z8u_A 81 FLAKYRDFLKSHE 93 (102)
T ss_dssp HHHHHHTTTCC--
T ss_pred HHHHHHHHHhccc
Confidence 9999999988865
No 61
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=31.25 E-value=1.2e+02 Score=24.05 Aligned_cols=39 Identities=10% Similarity=0.282 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy1937 243 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKF 281 (307)
Q Consensus 243 ~~r~~~l~~~~~sL~~hq~kle~el~~~e~~~~~kk~~~ 281 (307)
+.+++.|+..+..|..+-++.++|+++++...+.-.-++
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 455788888888888888888888888877776544433
No 62
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=30.31 E-value=2e+02 Score=22.58 Aligned_cols=47 Identities=15% Similarity=0.266 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHH
Q psy1937 246 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEEL 292 (307)
Q Consensus 246 ~~~l~~~~~sL~~hq~kle~el~~~e~~~~~kk~~~~~~s~~f~~~~ 292 (307)
++.|.-.+++|...-..||..|...+.+|+.....+...-...-.+|
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL 91 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEAL 91 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 66777777777777888888888888888765554444333333333
No 63
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=23.20 E-value=2.8e+02 Score=22.94 Aligned_cols=52 Identities=6% Similarity=0.231 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHHhhhcc
Q psy1937 244 NRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKEKAS 298 (307)
Q Consensus 244 ~r~~~l~~~~~sL~~hq~kle~el~~~e~~~~~kk~~~~~~s~~f~~~~~~~~~~ 298 (307)
.+|..|++....+.. .+..|+..|.+++...-..+....+.|...|...|..
T Consensus 23 r~ia~l~r~~~~i~~---~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y~e~ 74 (171)
T 2p2u_A 23 AEIATIDRKVGEIEA---QMNEAIDAAKARASQKSAPLLARRKELEDGVATFATL 74 (171)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347777777666554 5678999999999999999999999999999988854
No 64
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=22.87 E-value=1.4e+02 Score=20.56 Aligned_cols=30 Identities=33% Similarity=0.566 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Q psy1937 244 NRMQVLKRQVQSLTMHQ---------KKLEAELQQIEEK 273 (307)
Q Consensus 244 ~r~~~l~~~~~sL~~hq---------~kle~el~~~e~~ 273 (307)
.|+..|++.|+.|.... +++|.|+..+++.
T Consensus 25 grieelkkkweelkkkieelggggevkkveeevkkleee 63 (67)
T 1lq7_A 25 GRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEE 63 (67)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 47888888888887654 3445555555443
No 65
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=22.28 E-value=31 Score=20.14 Aligned_cols=11 Identities=55% Similarity=1.132 Sum_probs=8.6
Q ss_pred CCCCccchhch
Q psy1937 88 PEKPLMPYMRY 98 (307)
Q Consensus 88 PKRPlsAy~lf 98 (307)
..||+++|..|
T Consensus 2 ~~rPlSpy~~Y 12 (26)
T 3mhp_C 2 TEQPLSPYTAY 12 (26)
T ss_dssp CCCCSSTTTTB
T ss_pred CccccCccccc
Confidence 45889999876
No 66
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=22.22 E-value=1.7e+02 Score=21.88 Aligned_cols=53 Identities=23% Similarity=0.331 Sum_probs=36.7
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHHhh
Q psy1937 243 TNRMQVLK---RQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKE 295 (307)
Q Consensus 243 ~~r~~~l~---~~~~sL~~hq~kle~el~~~e~~~~~kk~~~~~~s~~f~~~~~~~ 295 (307)
++|++.|- .++-+|..|.+..=..|-.....-..-|..|.+.+..|..-|-.+
T Consensus 4 qERL~sL~~ID~~i~sLL~~as~~i~tls~~k~~~~~~K~~F~~~t~~fy~tL~~v 59 (86)
T 3r84_A 4 QERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKS 59 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcHhHHHHHHHHHHHHHHHHHHH
Confidence 45665554 577778888877777766555433446778999999998877655
No 67
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=21.97 E-value=67 Score=28.86 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=39.2
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHHhhhccCCCC
Q psy1937 237 VRSVVTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKEKASCSEN 302 (307)
Q Consensus 237 ~rs~~~~~r~~~l~~~~~sL~~hq~kle~el~~~e~~~~~kk~~~~~~s~~f~~~~~~~~~~~~~~ 302 (307)
++++....|+..|++++.+|...-.+|.++|..++.+.. ...+||+++..|+.-.
T Consensus 47 ~~~~~~~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~-----------~LkeElerL~sPPL~i 101 (251)
T 3m9b_A 47 HAPTRSARDIHQLEARIDSLAARNSKLMETLKEARQQLL-----------ALREEVDRLGQPPSGY 101 (251)
T ss_dssp -----CCHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH-----------HHHHHHHHHHSCCEEE
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhcCCCceE
Confidence 555555778999999999999999999999888877653 3456777777666443
No 68
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=21.30 E-value=1.9e+02 Score=21.31 Aligned_cols=37 Identities=30% Similarity=0.447 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q psy1937 246 MQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFV 282 (307)
Q Consensus 246 ~~~l~~~~~sL~~hq~kle~el~~~e~~~~~kk~~~~ 282 (307)
|.-|++|+..|..-..+|+.|+..+..-.+.=|.||.
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE 38 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ 38 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999999888777665555555544
No 69
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=21.27 E-value=58 Score=22.19 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1937 243 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEK 273 (307)
Q Consensus 243 ~~r~~~l~~~~~sL~~hq~kle~el~~~e~~ 273 (307)
.+.+..|..+|..|...-..|..+|..+.+.
T Consensus 21 k~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 21 KEYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666655555555555555443
No 70
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=20.18 E-value=1.5e+02 Score=22.71 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhHHhh
Q psy1937 267 LQQIEEKFEAKKRKFVE 283 (307)
Q Consensus 267 l~~~e~~~~~kk~~~~~ 283 (307)
|..|++.|.+|.++..|
T Consensus 81 LdaLR~eH~~Klrr~ae 97 (98)
T 3f1i_H 81 LSALREEHREKLRRAAE 97 (98)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 55566677777666554
No 71
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=20.16 E-value=2.2e+02 Score=19.62 Aligned_cols=33 Identities=9% Similarity=0.256 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1937 243 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFE 275 (307)
Q Consensus 243 ~~r~~~l~~~~~sL~~hq~kle~el~~~e~~~~ 275 (307)
.+++..|..+++.|..--..|..++..++..-+
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777777777777777777777777776654
No 72
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=20.00 E-value=1.8e+02 Score=21.11 Aligned_cols=49 Identities=20% Similarity=0.326 Sum_probs=22.4
Q ss_pred HHhhhcc--cCCCCcchhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1937 225 INEIFSD--SVVPDVRSVVTTNRMQVLKR---QVQSLTMHQKKLEAELQQIEEKFE 275 (307)
Q Consensus 225 ~~Eifs~--~~v~d~rs~~~~~r~~~l~~---~~~sL~~hq~kle~el~~~e~~~~ 275 (307)
|++-|.. ..||...+ ...+..+|.. -+..|......|+.|+..++...+
T Consensus 21 in~~f~~L~~lvP~~~~--k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 21 INDKIIELKDLVVGTEA--KLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHTCSSC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777764 44454211 1233444442 333344444445555555555444
Done!