Your job contains 1 sequence.
>psy1937
QEDGYSVKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTTNRMQVLKRQVQSLTMHQHCQ
RVSRRGNVSQKMLTAKTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGK
IIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASISRPTWRAKAKASKPKQLRKSREAR
PKDSGEKMQIGRIDIQPAEDEDEQEDGYSVKHVAYARYLRNHRLINEIFSDSVVPDVRSV
VTTNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKEKASCS
ENEPYLF
The BLAST search returned 8 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1937
(307 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0030093 - symbol:dalao "dalao" species:7227 "Droso... 650 9.7e-64 1
UNIPROTKB|F1NCC9 - symbol:SMARCE1 "Uncharacterized protei... 592 1.4e-57 1
UNIPROTKB|A5PKF6 - symbol:SMARCE1 "SMARCE1 protein" speci... 589 2.8e-57 1
UNIPROTKB|E2QX86 - symbol:SMARCE1 "Uncharacterized protei... 589 2.8e-57 1
MGI|MGI:1927347 - symbol:Smarce1 "SWI/SNF related, matrix... 589 2.8e-57 1
UNIPROTKB|B4DGM3 - symbol:SMARCE1 "cDNA FLJ55202, highly ... 589 2.8e-57 1
UNIPROTKB|Q969G3 - symbol:SMARCE1 "SWI/SNF-related matrix... 589 2.8e-57 1
RGD|1304726 - symbol:Smarce1 "SWI/SNF related, matrix ass... 587 4.6e-57 1
UNIPROTKB|B4DFR4 - symbol:SMARCE1 "Smarce1 variant 5" spe... 532 3.1e-51 1
WB|WBGene00022182 - symbol:swsn-3 species:6239 "Caenorhab... 383 1.9e-35 1
UNIPROTKB|F1RXE6 - symbol:SMARCE1 "Uncharacterized protei... 324 3.4e-29 1
UNIPROTKB|J3QR61 - symbol:SMARCE1 "SWI/SNF-related matrix... 298 1.9e-26 1
UNIPROTKB|J3QKX6 - symbol:SMARCE1 "SWI/SNF-related matrix... 287 2.9e-25 1
UNIPROTKB|J3KT85 - symbol:SMARCE1 "SWI/SNF-related matrix... 241 2.1e-20 1
ASPGD|ASPL0000037691 - symbol:AN2885 species:162425 "Emer... 116 1.4e-06 1
SGD|S000004676 - symbol:ABF2 "Mitochondrial DNA-binding p... 121 7.1e-06 1
RGD|1586285 - symbol:LOC691220 "hypothetical protein LOC6... 124 8.2e-06 1
RGD|1588313 - symbol:LOC679451 "similar to High mobility ... 124 8.2e-06 1
UNIPROTKB|Q9W602 - symbol:ssrp1 "FACT complex subunit SSR... 133 9.3e-06 1
CGD|CAF0007020 - symbol:NHP6A species:5476 "Candida albic... 108 1.1e-05 1
UNIPROTKB|Q9UVL1 - symbol:NHP6 "Non-histone chromosomal p... 108 1.1e-05 1
SGD|S000002157 - symbol:NHP6B "High-mobility group (HMG) ... 108 1.1e-05 1
RGD|620682 - symbol:Tfam "transcription factor A, mitocho... 124 1.4e-05 1
UNIPROTKB|P07156 - symbol:HMGB1 "High mobility group prot... 118 1.7e-05 1
MGI|MGI:107810 - symbol:Tfam "transcription factor A, mit... 123 1.8e-05 1
UNIPROTKB|P0CB47 - symbol:UBTFL1 "Putative upstream-bindi... 127 1.9e-05 1
RGD|1589841 - symbol:LOC690940 "similar to High mobility ... 121 1.9e-05 1
RGD|1593466 - symbol:LOC689398 "similar to High mobility ... 121 1.9e-05 1
SGD|S000006256 - symbol:NHP6A "High-mobility group (HMG) ... 105 2.3e-05 1
FB|FBgn0010228 - symbol:HmgZ "HMG protein Z" species:7227... 104 3.0e-05 1
UNIPROTKB|F1STP6 - symbol:LOC100623257 "Uncharacterized p... 124 3.9e-05 1
MGI|MGI:2181659 - symbol:Tox "thymocyte selection-associa... 126 3.9e-05 1
TAIR|locus:2136103 - symbol:3xHMG-box1 "3xHigh Mobility G... 114 4.1e-05 2
UNIPROTKB|Q6YKA4 - symbol:HMGB1 "High mobility group prot... 118 4.7e-05 1
UNIPROTKB|P09429 - symbol:HMGB1 "High mobility group prot... 118 4.7e-05 1
RGD|2802 - symbol:Hmgb1 "high mobility group box 1" speci... 118 4.7e-05 1
MGI|MGI:3039593 - symbol:Tox3 "TOX high mobility group bo... 115 5.0e-05 2
UNIPROTKB|A8MRB2 - symbol:TFAM "Transcription factor A, m... 117 6.0e-05 1
UNIPROTKB|F1REZ8 - symbol:TOX3 "Uncharacterized protein" ... 110 6.1e-05 2
UNIPROTKB|F1LZG8 - symbol:F1LZG8 "Uncharacterized protein... 116 6.3e-05 1
UNIPROTKB|G4MS97 - symbol:MGG_04489 "Non-histone chromoso... 101 6.4e-05 1
UNIPROTKB|C9JQA7 - symbol:HMG20B "SWI/SNF-related matrix-... 103 7.7e-05 1
RGD|1311529 - symbol:Tox3 "TOX high mobility group box fa... 116 7.8e-05 2
UNIPROTKB|Q00059 - symbol:TFAM "Transcription factor A, m... 117 9.5e-05 1
UNIPROTKB|H0YKM5 - symbol:HMG20A "High mobility group pro... 109 0.00012 1
UNIPROTKB|F1M4J9 - symbol:F1M4J9 "Uncharacterized protein... 113 0.00013 1
SGD|S000001515 - symbol:IXR1 "Protein that binds DNA intr... 122 0.00013 1
POMBASE|SPAC57A10.09c - symbol:nhp6 "High-mobility group ... 98 0.00014 1
UNIPROTKB|P10103 - symbol:HMGB1 "High mobility group prot... 114 0.00014 1
UNIPROTKB|F2Z594 - symbol:HMGB1 "High mobility group prot... 114 0.00014 1
RGD|1591683 - symbol:LOC681718 "similar to High mobility ... 114 0.00014 1
UNIPROTKB|B6ZLK1 - symbol:SSRP1 "Structure-specific recog... 119 0.00015 2
UNIPROTKB|Q04678 - symbol:SSRP1 "FACT complex subunit SSR... 119 0.00015 2
ZFIN|ZDB-GENE-031118-9 - symbol:ssrp1a "structure specifi... 122 0.00016 1
UNIPROTKB|Q5D144 - symbol:TFAM "Transcription factor A, m... 115 0.00016 1
UNIPROTKB|O15405 - symbol:TOX3 "TOX high mobility group b... 110 0.00018 2
UNIPROTKB|E1BMK2 - symbol:E1BMK2 "Uncharacterized protein... 113 0.00018 1
UNIPROTKB|P12682 - symbol:HMGB1 "High mobility group prot... 113 0.00018 1
UNIPROTKB|E1BA21 - symbol:TFAM "Transcription factor A, m... 114 0.00021 1
UNIPROTKB|Q0II87 - symbol:TFAM "Transcription factor A, m... 114 0.00021 1
UNIPROTKB|E1BQV6 - symbol:TOX3 "Uncharacterized protein" ... 110 0.00024 2
TAIR|locus:505006135 - symbol:HMGB2 "high mobility group ... 102 0.00025 1
UNIPROTKB|E2RKW6 - symbol:HMG20A "Uncharacterized protein... 116 0.00027 1
UNIPROTKB|Q9NP66 - symbol:HMG20A "High mobility group pro... 116 0.00027 1
UNIPROTKB|O94900 - symbol:TOX "Thymocyte selection-associ... 118 0.00031 1
UNIPROTKB|Q0VCL5 - symbol:HMG20A "High-mobility group 20A... 115 0.00035 1
UNIPROTKB|F1Q2J2 - symbol:SSRP1 "Uncharacterized protein"... 113 0.00037 2
RGD|1585821 - symbol:LOC680968 "similar to High mobility ... 110 0.00041 1
RGD|1589528 - symbol:LOC679344 "similar to High mobility ... 110 0.00042 1
RGD|1592627 - symbol:LOC685520 "similar to High mobility ... 110 0.00042 1
UNIPROTKB|E1BKT2 - symbol:TOX3 "Uncharacterized protein" ... 110 0.00043 2
UNIPROTKB|F1NLS2 - symbol:TFAM "Uncharacterized protein" ... 112 0.00044 1
FB|FBgn0004362 - symbol:HmgD "High mobility group protein... 93 0.00048 1
UNIPROTKB|F1N927 - symbol:HMGB1 "High mobility group prot... 109 0.00055 1
UNIPROTKB|Q9YH06 - symbol:HMG1 "High mobility group 1 pro... 109 0.00056 1
RGD|1587112 - symbol:Hmg1l1 "high-mobility group (nonhist... 109 0.00056 1
MGI|MGI:1916567 - symbol:Hmgb4 "high-mobility group box 4... 94 0.00062 2
WB|WBGene00001975 - symbol:hmg-5 species:6239 "Caenorhabd... 96 0.00069 2
UNIPROTKB|F1N8B1 - symbol:LOC100857252 "Uncharacterized p... 112 0.00077 1
GENEDB_PFALCIPARUM|MAL8P1.72 - symbol:MAL8P1.72 "high mob... 91 0.00080 1
UNIPROTKB|Q8IB14 - symbol:PfHMGB2 "High mobility group pr... 91 0.00080 1
UNIPROTKB|Q0P5K4 - symbol:TOX4 "TOX high mobility group b... 115 0.00085 1
FB|FBgn0035238 - symbol:CG12104 species:7227 "Drosophila ... 109 0.00086 1
RGD|1596979 - symbol:LOC678705 "hypothetical protein LOC6... 107 0.00094 1
MGI|MGI:1914117 - symbol:Hmg20a "high mobility group 20A"... 111 0.00098 1
>FB|FBgn0030093 [details] [associations]
symbol:dalao "dalao" species:7227 "Drosophila melanogaster"
[GO:0003713 "transcription coactivator activity" evidence=IC]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0035060 "brahma complex" evidence=NAS;IDA;IPI]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IGI;IPI]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893 GO:GO:0006338
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0035060 HSSP:P07155 EMBL:AF348329 ProteinModelPortal:Q9BIW6
DIP:DIP-36731N IntAct:Q9BIW6 STRING:Q9BIW6 PRIDE:Q9BIW6
FlyBase:FBgn0030093 InParanoid:Q9BIW6 ArrayExpress:Q9BIW6
Bgee:Q9BIW6 Uniprot:Q9BIW6
Length = 749
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 132/233 (56%), Positives = 165/233 (70%)
Query: 76 KTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKT 135
+ + R PK PKPPEKP++PYMRYS++VWD VKA++ +LKLWE+GK IG MW+ LPED+KT
Sbjct: 77 QNESRLPKPPKPPEKPILPYMRYSKRVWDSVKAKHPELKLWELGKKIGAMWKLLPEDEKT 136
Query: 136 EYVEDYEQEKNLKASTKLASISR-PTWRAKAKA-SKPKQLRKSREARPKDSGEKMQIGR- 192
E++++YE EK L+ L + + P ++A A SK K E + G K Q R
Sbjct: 137 EFIDEYEAEK-LEYEKSLKAYHQTPAYQAYMSAKSKVKTDVDMHETPSRGGGSKSQHERR 195
Query: 193 IDIQPAEDEDEQEDGYSVKHVAYARYLRNHRLINEIFXXXXXXXXXXXXTTNRMQVLKRQ 252
IDIQPAEDED+Q++GY+ KH+AYARYL NHRLINEIF TT RMQVLKRQ
Sbjct: 196 IDIQPAEDEDDQDEGYTTKHLAYARYLHNHRLINEIFSEAVVPDVRSVVTTTRMQVLKRQ 255
Query: 253 VQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKEKASCSENEPY 305
V SLTMHQ KLEAELQQ+EEKFEAKK++ VESSE FQEELK+ + E +
Sbjct: 256 VSSLTMHQTKLEAELQQMEEKFEAKKQRMVESSEAFQEELKRHCKPAVDEETF 308
Score = 189 (71.6 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 37/57 (64%), Positives = 41/57 (71%)
Query: 1 QEDGYSVKHVAYARYLRNHRLINEIFXXXXXXXXXXXXTTNRMQVLKRQVQSLTMHQ 57
Q++GY+ KH+AYARYL NHRLINEIF TT RMQVLKRQV SLTMHQ
Sbjct: 207 QDEGYTTKHLAYARYLHNHRLINEIFSEAVVPDVRSVVTTTRMQVLKRQVSSLTMHQ 263
Score = 39 (18.8 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 75 AKTDGRGPKAPKPPEKPLMP 94
+KTD P +PP KP +P
Sbjct: 420 SKTDPE-PMDIEPPPKPSVP 438
Score = 37 (18.1 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 81 GPKAPKPPEKPLMPY 95
GP P PP P PY
Sbjct: 583 GPP-PGPPGGPARPY 596
>UNIPROTKB|F1NCC9 [details] [associations]
symbol:SMARCE1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006337 "nucleosome disassembly" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0008080
"N-acetyltransferase activity" evidence=IEA] [GO:0016514 "SWI/SNF
complex" evidence=IEA] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA] [GO:0017053 "transcriptional
repressor complex" evidence=IEA] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] [GO:0071564 "npBAF complex"
evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0008080 GO:GO:0006337 CTD:6605 KO:K11651 OMA:EDESIPM
GeneTree:ENSGT00390000003628 EMBL:AADN02068741 IPI:IPI00580760
RefSeq:NP_001006335.2 UniGene:Gga.6244 Ensembl:ENSGALT00000006174
GeneID:420047 KEGG:gga:420047 NextBio:20823013 Uniprot:F1NCC9
Length = 412
Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
Identities = 124/232 (53%), Positives = 155/232 (66%)
Query: 66 GNV-SQKMLTAKTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQ 124
GN + +TA + PK PKPP+KPLMPYMRYSRKVWDQVKA N DLKLWEIGKIIG
Sbjct: 43 GNPGTNSRVTASSGITIPKPPKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGG 102
Query: 125 MWRDLPEDQKTEYVEDYEQEKNLKASTKLASISRPTWRAKAKASKPKQLRKSREARPKDS 184
MWRDL +++K EY+ +YE EK + A + P + A A + E+R + S
Sbjct: 103 MWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQS 162
Query: 185 GEKMQIGR--IDIQPAEDEDEQEDGYSVKHVAYARYLRNHRLINEIFXXXXXXXXXXXXT 242
+M+ G + IQPAED D+ +DG+S+KH A AR+ RNHRLI+EI T
Sbjct: 163 --RMEKGEPYMSIQPAEDPDDYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVT 220
Query: 243 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 294
T RMQVLKRQVQSL +HQ+KLEAEL QIEE+ + KKRKF+ES+E F ELK+
Sbjct: 221 TARMQVLKRQVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTESFNNELKR 272
Score = 155 (59.6 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
Identities = 32/56 (57%), Positives = 38/56 (67%)
Query: 2 EDGYSVKHVAYARYLRNHRLINEIFXXXXXXXXXXXXTTNRMQVLKRQVQSLTMHQ 57
+DG+S+KH A AR+ RNHRLI+EI TT RMQVLKRQVQSL +HQ
Sbjct: 183 DDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQ 238
Score = 59 (25.8 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
Identities = 18/81 (22%), Positives = 39/81 (48%)
Query: 127 RDLPEDQKTEYVEDYEQEKNLKASTKLASISRPTWRAKAKASKPKQLRKSREARPKDSGE 186
R E+++ E E E+ +N A+ + + ++ + K + S P + + E P++S E
Sbjct: 297 RKRQEEREKEAAEQAERSQNNTAAEEEQAANKMEEK-KEEESTPME---TEEPHPEESTE 352
Query: 187 KMQIGRIDIQPAEDEDEQEDG 207
Q G +D++ ++G
Sbjct: 353 NQQNGEEGTSTPDDKESGQEG 373
Score = 45 (20.9 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 249 LKRQVQ-SLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKEKASCSE 301
LKR + + +K+ AE+ Q EE +A+KR QEE +KE A +E
Sbjct: 270 LKRLCSLKVEVDMEKIAAEIAQAEE--QARKR---------QEEREKEAAEQAE 312
Score = 38 (18.4 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 14/62 (22%), Positives = 29/62 (46%)
Query: 246 MQVLKRQV-QSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQF---QEELKKEKASCSE 301
M+ + ++ Q+ +K+ E ++ E+ E + EQ EE K+E+++ E
Sbjct: 282 MEKIAAEIAQAEEQARKRQEEREKEAAEQAERSQNNTAAEEEQAANKMEEKKEEESTPME 341
Query: 302 NE 303
E
Sbjct: 342 TE 343
>UNIPROTKB|A5PKF6 [details] [associations]
symbol:SMARCE1 "SMARCE1 protein" species:9913 "Bos taurus"
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017053 "transcriptional repressor
complex" evidence=IEA] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0008080 GO:GO:0006337 CTD:6605 eggNOG:NOG291422
HOGENOM:HOG000230965 HOVERGEN:HBG054558 KO:K11651 OMA:EDESIPM
OrthoDB:EOG4229K4 GeneTree:ENSGT00390000003628 EMBL:DAAA02049142
EMBL:BC142470 IPI:IPI00854477 RefSeq:NP_001092586.1
UniGene:Bt.46178 STRING:A5PKF6 Ensembl:ENSBTAT00000020356
GeneID:540910 KEGG:bta:540910 InParanoid:A5PKF6 NextBio:20878909
Uniprot:A5PKF6
Length = 415
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 123/232 (53%), Positives = 155/232 (66%)
Query: 66 GNV-SQKMLTAKTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQ 124
GN + +TA + PK PKPP+KPLMPYMRYSRKVWDQVKA N DLKLWEIGKIIG
Sbjct: 43 GNPGTNSRVTASSGITIPKPPKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGG 102
Query: 125 MWRDLPEDQKTEYVEDYEQEKNLKASTKLASISRPTWRAKAKASKPKQLRKSREARPKDS 184
MWRDL +++K EY+ +YE EK + A + P + A A + E+R + S
Sbjct: 103 MWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQS 162
Query: 185 GEKMQIGR--IDIQPAEDEDEQEDGYSVKHVAYARYLRNHRLINEIFXXXXXXXXXXXXT 242
+M+ G + IQPAED D+ +DG+S+KH A AR+ RNHRLI+EI T
Sbjct: 163 --RMEKGEPYMSIQPAEDPDDYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVT 220
Query: 243 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 294
T RMQVLKRQVQSL +HQ+KLEAEL QIEE+ + KKRKF+ES++ F ELK+
Sbjct: 221 TARMQVLKRQVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKR 272
Score = 155 (59.6 bits), Expect = 9.9e-11, Sum P(2) = 9.9e-11
Identities = 32/56 (57%), Positives = 38/56 (67%)
Query: 2 EDGYSVKHVAYARYLRNHRLINEIFXXXXXXXXXXXXTTNRMQVLKRQVQSLTMHQ 57
+DG+S+KH A AR+ RNHRLI+EI TT RMQVLKRQVQSL +HQ
Sbjct: 183 DDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQ 238
Score = 57 (25.1 bits), Expect = 9.9e-11, Sum P(2) = 9.9e-11
Identities = 22/84 (26%), Positives = 42/84 (50%)
Query: 131 EDQKTEYVEDYEQEKN-LKASTKLASISRPTWRAKAK-ASKPKQLRKSREARPKDSGEKM 188
+++K +++E + N LK L + + A+ A +Q RK +E R K++ E+
Sbjct: 253 QEKKRKFLESTDSFNNELKRLCGL-KVEVDMEKIAAEIAQAEEQARKRQEEREKEAAEQA 311
Query: 189 QIGRIDIQPAED------EDEQED 206
+ + I P E+ ED++ED
Sbjct: 312 ERSQSSIIPEEEPAASKTEDKKED 335
Score = 54 (24.1 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 261 KKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKEKASCSENEP 304
+K+ AE+ Q EE +A+KR+ E ++ + + + E EP
Sbjct: 283 EKIAAEIAQAEE--QARKRQEEREKEAAEQAERSQSSIIPEEEP 324
>UNIPROTKB|E2QX86 [details] [associations]
symbol:SMARCE1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0008080
"N-acetyltransferase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053
GO:GO:0045892 GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0008080 GO:GO:0006337 CTD:6605 KO:K11651
OMA:EDESIPM GeneTree:ENSGT00390000003628 EMBL:AAEX03006463
RefSeq:XP_862912.2 Ensembl:ENSCAFT00000025430 GeneID:608250
KEGG:cfa:608250 NextBio:20893916 Uniprot:E2QX86
Length = 393
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 123/232 (53%), Positives = 155/232 (66%)
Query: 66 GNV-SQKMLTAKTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQ 124
GN + +TA + PK PKPP+KPLMPYMRYSRKVWDQVKA N DLKLWEIGKIIG
Sbjct: 25 GNPGTNSRVTASSGITIPKPPKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGG 84
Query: 125 MWRDLPEDQKTEYVEDYEQEKNLKASTKLASISRPTWRAKAKASKPKQLRKSREARPKDS 184
MWRDL +++K EY+ +YE EK + A + P + A A + E+R + S
Sbjct: 85 MWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQS 144
Query: 185 GEKMQIGR--IDIQPAEDEDEQEDGYSVKHVAYARYLRNHRLINEIFXXXXXXXXXXXXT 242
+M+ G + IQPAED D+ +DG+S+KH A AR+ RNHRLI+EI T
Sbjct: 145 --RMEKGEPYMSIQPAEDPDDYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVT 202
Query: 243 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 294
T RMQVLKRQVQSL +HQ+KLEAEL QIEE+ + KKRKF+ES++ F ELK+
Sbjct: 203 TARMQVLKRQVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKR 254
Score = 155 (59.6 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 32/56 (57%), Positives = 38/56 (67%)
Query: 2 EDGYSVKHVAYARYLRNHRLINEIFXXXXXXXXXXXXTTNRMQVLKRQVQSLTMHQ 57
+DG+S+KH A AR+ RNHRLI+EI TT RMQVLKRQVQSL +HQ
Sbjct: 165 DDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQ 220
Score = 55 (24.4 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 261 KKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKEKASCSENEP 304
+K+ AE+ Q EE +A+KR+ E ++ + + + E EP
Sbjct: 265 EKIAAEIAQAEE--QARKRQEEREKEAAEQAERSQSSMVPEEEP 306
Score = 50 (22.7 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 17/72 (23%), Positives = 36/72 (50%)
Query: 131 EDQKTEYVEDYEQEKN-LKASTKLASISRPTWRAKAK-ASKPKQLRKSREARPKDSGEKM 188
+++K +++E + N LK L + + A+ A +Q RK +E R K++ E+
Sbjct: 235 QEKKRKFLESTDSFNNELKRLCGL-KVEVDMEKIAAEIAQAEEQARKRQEEREKEAAEQA 293
Query: 189 QIGRIDIQPAED 200
+ + + P E+
Sbjct: 294 ERSQSSMVPEEE 305
>MGI|MGI:1927347 [details] [associations]
symbol:Smarce1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily e, member 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006337 "nucleosome
disassembly" evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=ISO]
[GO:0017053 "transcriptional repressor complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0047485 "protein N-terminus binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=IDA] [GO:0071565
"nBAF complex" evidence=IDA] InterPro:IPR009071 PROSITE:PS00353
MGI:MGI:1927347 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0007399 GO:GO:0003677 GO:GO:0006338 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0008080 GO:GO:0006337 CTD:6605
eggNOG:NOG291422 HOGENOM:HOG000230965 HOVERGEN:HBG054558 KO:K11651
OMA:EDESIPM OrthoDB:EOG4229K4 EMBL:AF035263 EMBL:AK076177
EMBL:BC047141 EMBL:BC061498 EMBL:BC065043 IPI:IPI00119892
RefSeq:NP_065643.1 UniGene:Mm.379086 UniGene:Mm.389717
ProteinModelPortal:O54941 SMR:O54941 IntAct:O54941 STRING:O54941
PhosphoSite:O54941 PaxDb:O54941 PRIDE:O54941
Ensembl:ENSMUST00000103133 GeneID:57376 KEGG:mmu:57376
GeneTree:ENSGT00390000003628 InParanoid:O54941 ChiTaRS:SMARCE1
NextBio:313752 Bgee:O54941 Genevestigator:O54941
GermOnline:ENSMUSG00000037935 Uniprot:O54941
Length = 411
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 123/232 (53%), Positives = 155/232 (66%)
Query: 66 GNV-SQKMLTAKTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQ 124
GN + +TA + PK PKPP+KPLMPYMRYSRKVWDQVKA N DLKLWEIGKIIG
Sbjct: 43 GNPGTNSRVTASSGITIPKPPKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGG 102
Query: 125 MWRDLPEDQKTEYVEDYEQEKNLKASTKLASISRPTWRAKAKASKPKQLRKSREARPKDS 184
MWRDL +++K EY+ +YE EK + A + P + A A + E+R + S
Sbjct: 103 MWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQS 162
Query: 185 GEKMQIGR--IDIQPAEDEDEQEDGYSVKHVAYARYLRNHRLINEIFXXXXXXXXXXXXT 242
+M+ G + IQPAED D+ +DG+S+KH A AR+ RNHRLI+EI T
Sbjct: 163 --RMEKGEPYMSIQPAEDPDDYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVT 220
Query: 243 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 294
T RMQVLKRQVQSL +HQ+KLEAEL QIEE+ + KKRKF+ES++ F ELK+
Sbjct: 221 TARMQVLKRQVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKR 272
Score = 155 (59.6 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 32/56 (57%), Positives = 38/56 (67%)
Query: 2 EDGYSVKHVAYARYLRNHRLINEIFXXXXXXXXXXXXTTNRMQVLKRQVQSLTMHQ 57
+DG+S+KH A AR+ RNHRLI+EI TT RMQVLKRQVQSL +HQ
Sbjct: 183 DDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQ 238
Score = 54 (24.1 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 20/87 (22%), Positives = 44/87 (50%)
Query: 131 EDQKTEYVEDYEQEKN-LKASTKLASISRPTWRAKAK-ASKPKQLRKSREARPKDSGEKM 188
+++K +++E + N LK L + + A+ A +Q RK +E R K++ E+
Sbjct: 253 QEKKRKFLESTDSFNNELKRLCGL-KVEVDMEKIAAEIAQAEEQARKRQEEREKEAAEQA 311
Query: 189 QIGRIDIQPAEDE-----DEQEDGYSV 210
+ + + P E++ +E++D S+
Sbjct: 312 ERSQSSMAPEEEQVANKAEEKKDEESI 338
Score = 51 (23.0 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 261 KKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKEKASCSENE 303
+K+ AE+ Q EE +A+KR+ E ++ E+ ++ ++S + E
Sbjct: 283 EKIAAEIAQAEE--QARKRQ-EEREKEAAEQAERSQSSMAPEE 322
>UNIPROTKB|B4DGM3 [details] [associations]
symbol:SMARCE1 "cDNA FLJ55202, highly similar to
SWI/SNF-related matrix-associatedactin-dependent regulator of
chromatin subfamily E member 1" species:9606 "Homo sapiens"
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 UniGene:Hs.740388
HGNC:HGNC:11109 HOVERGEN:HBG054558 OrthoDB:EOG4229K4 EMBL:AC004585
EMBL:AC073508 EMBL:AK294666 IPI:IPI01015411 SMR:B4DGM3
STRING:B4DGM3 Ensembl:ENST00000431889 Uniprot:B4DGM3
Length = 393
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 123/232 (53%), Positives = 155/232 (66%)
Query: 66 GNV-SQKMLTAKTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQ 124
GN + +TA + PK PKPP+KPLMPYMRYSRKVWDQVKA N DLKLWEIGKIIG
Sbjct: 25 GNPGTNSRVTASSGITIPKPPKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGG 84
Query: 125 MWRDLPEDQKTEYVEDYEQEKNLKASTKLASISRPTWRAKAKASKPKQLRKSREARPKDS 184
MWRDL +++K EY+ +YE EK + A + P + A A + E+R + S
Sbjct: 85 MWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQS 144
Query: 185 GEKMQIGR--IDIQPAEDEDEQEDGYSVKHVAYARYLRNHRLINEIFXXXXXXXXXXXXT 242
+M+ G + IQPAED D+ +DG+S+KH A AR+ RNHRLI+EI T
Sbjct: 145 --RMEKGEPYMSIQPAEDPDDYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVT 202
Query: 243 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 294
T RMQVLKRQVQSL +HQ+KLEAEL QIEE+ + KKRKF+ES++ F ELK+
Sbjct: 203 TARMQVLKRQVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKR 254
Score = 155 (59.6 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 32/56 (57%), Positives = 38/56 (67%)
Query: 2 EDGYSVKHVAYARYLRNHRLINEIFXXXXXXXXXXXXTTNRMQVLKRQVQSLTMHQ 57
+DG+S+KH A AR+ RNHRLI+EI TT RMQVLKRQVQSL +HQ
Sbjct: 165 DDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQ 220
Score = 55 (24.4 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 18/73 (24%), Positives = 37/73 (50%)
Query: 131 EDQKTEYVEDYEQEKN-LKASTKLASISRPTWRAKAK-ASKPKQLRKSREARPKDSGEKM 188
+++K +++E + N LK L + + A+ A +Q RK +E R K++ E+
Sbjct: 235 QEKKRKFLESTDSFNNELKRLCGL-KVEVDMEKIAAEIAQAEEQARKRQEEREKEAAEQA 293
Query: 189 QIGRIDIQPAEDE 201
+ + I P E++
Sbjct: 294 ERSQSSIVPEEEQ 306
Score = 43 (20.2 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 261 KKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKEKASCSE 301
+K+ AE+ Q EE +A+KR QEE +KE A +E
Sbjct: 265 EKIAAEIAQAEE--QARKR---------QEEREKEAAEQAE 294
>UNIPROTKB|Q969G3 [details] [associations]
symbol:SMARCE1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0017053
"transcriptional repressor complex" evidence=IPI] [GO:0008080
"N-acetyltransferase activity" evidence=IDA] [GO:0016514 "SWI/SNF
complex" evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0003682 "chromatin
binding" evidence=TAS] [GO:0000228 "nuclear chromosome"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=NAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=NAS] [GO:0006337 "nucleosome disassembly" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IDA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR009071
PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0007399 GO:GO:0003677 EMBL:CH471152 GO:GO:0006357
GO:GO:0003682 GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0003713 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 Pathway_Interaction_DB:ar_tf_pathway
GO:GO:0008080 GO:GO:0006337 GO:GO:0000228 EMBL:AF035262
EMBL:BT007176 EMBL:AK001532 EMBL:AK095047 EMBL:BC007082
EMBL:BC011017 EMBL:BC063700 IPI:IPI00017669 IPI:IPI01018063
RefSeq:NP_003070.3 UniGene:Hs.740388 ProteinModelPortal:Q969G3
SMR:Q969G3 DIP:DIP-27614N DIP:DIP-33041N IntAct:Q969G3
MINT:MINT-1137973 STRING:Q969G3 PhosphoSite:Q969G3 DMDM:61247587
PaxDb:Q969G3 PRIDE:Q969G3 DNASU:6605 Ensembl:ENST00000348513
GeneID:6605 KEGG:hsa:6605 UCSC:uc002hux.2 CTD:6605
GeneCards:GC17M038781 HGNC:HGNC:11109 HPA:HPA003916 MIM:603111
neXtProt:NX_Q969G3 PharmGKB:PA35959 eggNOG:NOG291422
HOGENOM:HOG000230965 HOVERGEN:HBG054558 InParanoid:Q969G3 KO:K11651
OMA:EDESIPM OrthoDB:EOG4229K4 GenomeRNAi:6605 NextBio:25703
ArrayExpress:Q969G3 Bgee:Q969G3 CleanEx:HS_SMARCE1
Genevestigator:Q969G3 GermOnline:ENSG00000073584 Uniprot:Q969G3
Length = 411
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 123/232 (53%), Positives = 155/232 (66%)
Query: 66 GNV-SQKMLTAKTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQ 124
GN + +TA + PK PKPP+KPLMPYMRYSRKVWDQVKA N DLKLWEIGKIIG
Sbjct: 43 GNPGTNSRVTASSGITIPKPPKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGG 102
Query: 125 MWRDLPEDQKTEYVEDYEQEKNLKASTKLASISRPTWRAKAKASKPKQLRKSREARPKDS 184
MWRDL +++K EY+ +YE EK + A + P + A A + E+R + S
Sbjct: 103 MWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQS 162
Query: 185 GEKMQIGR--IDIQPAEDEDEQEDGYSVKHVAYARYLRNHRLINEIFXXXXXXXXXXXXT 242
+M+ G + IQPAED D+ +DG+S+KH A AR+ RNHRLI+EI T
Sbjct: 163 --RMEKGEPYMSIQPAEDPDDYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVT 220
Query: 243 TNRMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 294
T RMQVLKRQVQSL +HQ+KLEAEL QIEE+ + KKRKF+ES++ F ELK+
Sbjct: 221 TARMQVLKRQVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKR 272
Score = 155 (59.6 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 32/56 (57%), Positives = 38/56 (67%)
Query: 2 EDGYSVKHVAYARYLRNHRLINEIFXXXXXXXXXXXXTTNRMQVLKRQVQSLTMHQ 57
+DG+S+KH A AR+ RNHRLI+EI TT RMQVLKRQVQSL +HQ
Sbjct: 183 DDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQ 238
Score = 55 (24.4 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 18/73 (24%), Positives = 37/73 (50%)
Query: 131 EDQKTEYVEDYEQEKN-LKASTKLASISRPTWRAKAK-ASKPKQLRKSREARPKDSGEKM 188
+++K +++E + N LK L + + A+ A +Q RK +E R K++ E+
Sbjct: 253 QEKKRKFLESTDSFNNELKRLCGL-KVEVDMEKIAAEIAQAEEQARKRQEEREKEAAEQA 311
Query: 189 QIGRIDIQPAEDE 201
+ + I P E++
Sbjct: 312 ERSQSSIVPEEEQ 324
Score = 43 (20.2 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 261 KKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKEKASCSE 301
+K+ AE+ Q EE +A+KR QEE +KE A +E
Sbjct: 283 EKIAAEIAQAEE--QARKR---------QEEREKEAAEQAE 312
>RGD|1304726 [details] [associations]
symbol:Smarce1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily e, member 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006337
"nucleosome disassembly" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=ISO]
[GO:0017053 "transcriptional repressor complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0047485 "protein N-terminus binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565
"nBAF complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 RGD:1304726
GO:GO:0005634 GO:GO:0007399 GO:GO:0003677 GO:GO:0016568
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
UniGene:Rn.10829 HOVERGEN:HBG054558 KO:K11651 EMBL:BC091314
EMBL:BC092210 EMBL:EU327027 EMBL:EU327028 EMBL:EU327029
EMBL:EU327030 EMBL:EU327031 IPI:IPI00370983 RefSeq:NP_001020164.1
UniGene:Rn.8513 ProteinModelPortal:Q56A18 STRING:Q56A18
GeneID:303518 KEGG:rno:303518 InParanoid:Q56A18 NextBio:651503
Genevestigator:Q56A18 Uniprot:Q56A18
Length = 376
Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
Identities = 119/215 (55%), Positives = 148/215 (68%)
Query: 82 PKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDY 141
PK PKPP+KPLMPYMRYSRKVWDQVKA N DLKLWEIGKIIG MWRDL +++K EY+ +Y
Sbjct: 25 PKPPKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEY 84
Query: 142 EQEKNLKASTKLASISRPTWRAKAKASKPKQLRKSREARPKDSGEKMQIGR--IDIQPAE 199
E EK + A + P + A A + E+R + S +M+ G + IQPAE
Sbjct: 85 EAEKIEYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQS--RMEKGEPYMSIQPAE 142
Query: 200 DEDEQEDGYSVKHVAYARYLRNHRLINEIFXXXXXXXXXXXXTTNRMQVLKRQVQSLTMH 259
D D+ +DG+S+KH A AR+ RNHRLI+EI TT RMQVLKRQVQSL +H
Sbjct: 143 DPDDYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVH 202
Query: 260 QKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 294
Q+KLEAEL QIEE+ + KKRKF+ES++ F ELK+
Sbjct: 203 QRKLEAELLQIEERHQEKKRKFLESTDSFNNELKR 237
Score = 157 (60.3 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 58/210 (27%), Positives = 96/210 (45%)
Query: 2 EDGYSVKHVAYARYLRNHRLINEIFXXXXXXXXXXXXTTNRMQVLKRQVQSLTMHQHCQR 61
+DG+S+KH A AR+ RNHRLI+EI TT RMQVLKRQVQSL +HQ
Sbjct: 148 DDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQR--- 204
Query: 62 VSRRGNVSQKMLTAKTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKI 121
+ ++L + + K K L ++ ++ ++ +++ + +I
Sbjct: 205 -----KLEAELLQIEERHQEKK-----RKFLESTDSFNNEL-KRLCGLKVEVDMEKIAAE 253
Query: 122 IGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASISRPTWRAKAKASKPKQLR----KSR 177
I Q E+Q + E+ E+E +A SI+ + KA + K ++
Sbjct: 254 IAQA-----EEQARKRQEEREKEAAEQAERSQGSIAPEEEQVANKAEEKKDEENIPMETE 308
Query: 178 EARPKDSGEKMQIGRIDIQPAEDEDEQEDG 207
E +D+ E Q G ED++ ++G
Sbjct: 309 ETHLEDTAENQQNGEEGTSTPEDKESGQEG 338
>UNIPROTKB|B4DFR4 [details] [associations]
symbol:SMARCE1 "Smarce1 variant 5" species:9606 "Homo
sapiens" [GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
UniGene:Hs.740388 HGNC:HGNC:11109 HOVERGEN:HBG054558 EMBL:AC004585
EMBL:AC073508 EMBL:EU327019 EMBL:AK294218 IPI:IPI01015775
SMR:B4DFR4 STRING:B4DFR4 Ensembl:ENST00000544009
Ensembl:ENST00000578044 Uniprot:B4DFR4
Length = 341
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 110/204 (53%), Positives = 138/204 (67%)
Query: 93 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTK 152
MPYMRYSRKVWDQVKA N DLKLWEIGKIIG MWRDL +++K EY+ +YE EK +
Sbjct: 1 MPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESM 60
Query: 153 LASISRPTWRAKAKASKPKQLRKSREARPKDSGEKMQIGR--IDIQPAEDEDEQEDGYSV 210
A + P + A A + E+R + S +M+ G + IQPAED D+ +DG+S+
Sbjct: 61 KAYHNSPAYLAYINAKSRAEAALEEESRQRQS--RMEKGEPYMSIQPAEDPDDYDDGFSM 118
Query: 211 KHVAYARYLRNHRLINEIFXXXXXXXXXXXXTTNRMQVLKRQVQSLTMHQKKLEAELQQI 270
KH A AR+ RNHRLI+EI TT RMQVLKRQVQSL +HQ+KLEAEL QI
Sbjct: 119 KHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRKLEAELLQI 178
Query: 271 EEKFEAKKRKFVESSEQFQEELKK 294
EE+ + KKRKF+ES++ F ELK+
Sbjct: 179 EERHQEKKRKFLESTDSFNNELKR 202
Score = 155 (59.6 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 32/56 (57%), Positives = 38/56 (67%)
Query: 2 EDGYSVKHVAYARYLRNHRLINEIFXXXXXXXXXXXXTTNRMQVLKRQVQSLTMHQ 57
+DG+S+KH A AR+ RNHRLI+EI TT RMQVLKRQVQSL +HQ
Sbjct: 113 DDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQ 168
Score = 55 (24.4 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 18/73 (24%), Positives = 37/73 (50%)
Query: 131 EDQKTEYVEDYEQEKN-LKASTKLASISRPTWRAKAK-ASKPKQLRKSREARPKDSGEKM 188
+++K +++E + N LK L + + A+ A +Q RK +E R K++ E+
Sbjct: 183 QEKKRKFLESTDSFNNELKRLCGL-KVEVDMEKIAAEIAQAEEQARKRQEEREKEAAEQA 241
Query: 189 QIGRIDIQPAEDE 201
+ + I P E++
Sbjct: 242 ERSQSSIVPEEEQ 254
Score = 43 (20.2 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 261 KKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKEKASCSE 301
+K+ AE+ Q EE +A+KR QEE +KE A +E
Sbjct: 213 EKIAAEIAQAEE--QARKR---------QEEREKEAAEQAE 242
>WB|WBGene00022182 [details] [associations]
symbol:swsn-3 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0010171
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0040035 eggNOG:NOG291422 HOGENOM:HOG000230965 KO:K11651
GeneTree:ENSGT00390000003628 EMBL:FO081822 RefSeq:NP_497613.2
ProteinModelPortal:Q9BL39 SMR:Q9BL39 STRING:Q9BL39 PaxDb:Q9BL39
EnsemblMetazoa:Y71H2AM.17 GeneID:175393 KEGG:cel:CELE_Y71H2AM.17
UCSC:Y71H2AM.17 CTD:175393 WormBase:Y71H2AM.17 InParanoid:Q9BL39
OMA:IQPVDED NextBio:887970 Uniprot:Q9BL39
Length = 338
Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 82/213 (38%), Positives = 122/213 (57%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYE 142
+ PK PE+PL PYMRYSRK+W +V+A+N + +LW+IGK+IG+ W DLP+ +K+ Y +YE
Sbjct: 21 RGPKVPERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYWLDLPDGEKSHYQHEYE 80
Query: 143 QEKNLKASTKLASISRPTWRAKAKASKPKQLRKSR-EARPKDSGEKMQIGRIDIQPAEDE 201
EK A + + + K R + K S +M G + IQP DE
Sbjct: 81 LEK--------ADYEKQMKHFQGNGISNFMINKGRAKNNEKMSRSRMDAGGVVIQPV-DE 131
Query: 202 DEQEDGYSVKHVAYARYLRNHRLINEIFXXXXXXXXXXXXTTNRMQVLKRQVQSLTMHQK 261
D+ + S + +A R+ RN+RLI+++F +RM++LKRQ SL HQ
Sbjct: 132 DDGGNELSTRRLAGVRFERNNRLISDLFSPSIVTDTRTVVPHHRMEMLKRQATSLGTHQS 191
Query: 262 KLEAELQQIEEKFEAKKRKFVESSEQFQEELKK 294
KLE EL ++E + +KR + S+ FQE+LKK
Sbjct: 192 KLEEELTKLERAHDNRKRAIEKGSDDFQEQLKK 224
>UNIPROTKB|F1RXE6 [details] [associations]
symbol:SMARCE1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017053 "transcriptional repressor
complex" evidence=IEA] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0008080 GO:GO:0006337 GeneTree:ENSGT00390000003628
EMBL:CU856162 Ensembl:ENSSSCT00000019017 OMA:HANINAK Uniprot:F1RXE6
Length = 194
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 70/140 (50%), Positives = 88/140 (62%)
Query: 66 GNV-SQKMLTAKTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQ 124
GN + +TA + PK PKPP+KPLMPYMRYSRKVWDQVKA N DLKLWEIGKIIG
Sbjct: 43 GNPGTNSRVTASSGITIPKPPKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGG 102
Query: 125 MWRDLPEDQKTEYVEDYEQEKNLKASTKLASISRPTWRAKAKASKPKQLRKSREARPKDS 184
MWRDL +++K EY+ +YE EK + A + P + A A + E+R + S
Sbjct: 103 MWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQS 162
Query: 185 GEKMQIGR--IDIQPAEDED 202
+M+ G + IQPAED D
Sbjct: 163 --RMEKGEPYMSIQPAEDPD 180
>UNIPROTKB|J3QR61 [details] [associations]
symbol:SMARCE1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member 1"
species:9606 "Homo sapiens" [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HGNC:HGNC:11109 EMBL:AC004585 EMBL:AC073508 Ensembl:ENST00000580654
Uniprot:J3QR61
Length = 153
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 63/127 (49%), Positives = 80/127 (62%)
Query: 66 GNV-SQKMLTAKTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQ 124
GN + +TA + PK PKPP+KPLMPYMRYSRKVWDQVKA N DLKLWEIGKIIG
Sbjct: 25 GNPGTNSRVTASSGITIPKPPKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGG 84
Query: 125 MWRDLPEDQKTEYVEDYEQEKNLKASTKLASISRPTWRAKAKASKPKQLRKSREARPKDS 184
MWRDL +++K EY+ +YE EK + A + P + A A + E+R + S
Sbjct: 85 MWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQS 144
Query: 185 GEKMQIG 191
+M+ G
Sbjct: 145 --RMEKG 149
>UNIPROTKB|J3QKX6 [details] [associations]
symbol:SMARCE1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member 1"
species:9606 "Homo sapiens" [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HGNC:HGNC:11109 EMBL:AC004585 EMBL:AC073508 Ensembl:ENST00000582955
Uniprot:J3QKX6
Length = 129
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 54/81 (66%), Positives = 63/81 (77%)
Query: 66 GNV-SQKMLTAKTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQ 124
GN + +TA + PK PKPP+KPLMPYMRYSRKVWDQVKA N DLKLWEIGKIIG
Sbjct: 43 GNPGTNSRVTASSGITIPKPPKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGG 102
Query: 125 MWRDLPEDQKTEYVEDYEQEK 145
MWRDL +++K EY+ +YE EK
Sbjct: 103 MWRDLTDEEKQEYLNEYEAEK 123
>UNIPROTKB|J3KT85 [details] [associations]
symbol:SMARCE1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member 1"
species:9606 "Homo sapiens" [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HGNC:HGNC:11109 EMBL:AC004585 EMBL:AC073508 Ensembl:ENST00000577721
Uniprot:J3KT85
Length = 101
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 50/99 (50%), Positives = 63/99 (63%)
Query: 93 MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTK 152
MPYMRYSRKVWDQVKA N DLKLWEIGKIIG MWRDL +++K EY+ +YE EK +
Sbjct: 1 MPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESM 60
Query: 153 LASISRPTWRAKAKASKPKQLRKSREARPKDSGEKMQIG 191
A + P + A A + E+R + S +M+ G
Sbjct: 61 KAYHNSPAYLAYINAKSRAEAALEEESRQRQS--RMEKG 97
>ASPGD|ASPL0000037691 [details] [associations]
symbol:AN2885 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0070898 "RNA
polymerase III transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005694 GO:GO:0006355 GO:GO:0043565 GO:GO:0006281
EMBL:BN001306 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AACD01000051 GO:GO:0031491 HOGENOM:HOG000197861 GO:GO:0051123
GO:GO:0032301 OMA:FFANDNR OrthoDB:EOG4S7P0P GO:GO:0034724
GO:GO:0070898 RefSeq:XP_660489.1 ProteinModelPortal:Q5B995
SMR:Q5B995 STRING:Q5B995 EnsemblFungi:CADANIAT00010204
GeneID:2874036 KEGG:ani:AN2885.2 Uniprot:Q5B995
Length = 106
Score = 116 (45.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 24/91 (26%), Positives = 47/91 (51%)
Query: 65 RGNVSQKM-LTAKTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIG 123
+ N ++K T +T GR K P P++ L YM ++ D+V+ +N + ++GK++G
Sbjct: 3 KANPTRKTKATRETGGRKKKDPNAPKRGLSAYMFFANDNRDKVREENPGISFGQVGKMLG 62
Query: 124 QMWRDLPEDQKTEYVEDYEQEKNLKASTKLA 154
+ W+ L + ++ Y + +K K A
Sbjct: 63 EKWKSLSDKERKPYEDKAAADKKRYEDEKAA 93
>SGD|S000004676 [details] [associations]
symbol:ABF2 "Mitochondrial DNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0090139
"mitochondrial DNA packaging" evidence=IMP] [GO:0000001
"mitochondrion inheritance" evidence=IMP] [GO:0000002
"mitochondrial genome maintenance" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0000262 "mitochondrial chromosome"
evidence=IDA] [GO:0008301 "DNA binding, bending" evidence=IDA]
[GO:0042645 "mitochondrial nucleoid" evidence=IDA]
InterPro:IPR009071 SGD:S000004676 Pfam:PF00505 GO:GO:0005634
EMBL:M73753 EMBL:AJ223169 EMBL:Z48952 EMBL:AY557967 EMBL:BK006946
PIR:A41302 RefSeq:NP_013788.1 ProteinModelPortal:Q02486 SMR:Q02486
DIP:DIP-5492N IntAct:Q02486 MINT:MINT-505363 STRING:Q02486
PaxDb:Q02486 PeptideAtlas:Q02486 EnsemblFungi:YMR072W GeneID:855094
KEGG:sce:YMR072W CYGD:YMR072w eggNOG:COG5648
GeneTree:ENSGT00680000100562 OMA:FHESSKP OrthoDB:EOG483HF0
NextBio:978405 Genevestigator:Q02486 GermOnline:YMR072W
GO:GO:0000262 GO:GO:0008301 GO:GO:0090139 GO:GO:0000001
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Uniprot:Q02486
Length = 183
Score = 121 (47.7 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 24/65 (36%), Positives = 41/65 (63%)
Query: 87 PPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYE---Q 143
PP+KP P+++Y+ +V QV AQ+ D ++ KIIG W+ L + K +Y+++Y+ Q
Sbjct: 115 PPKKPAGPFIKYANEVRSQVFAQHPDKSQLDLMKIIGDKWQSLDQSIKDKYIQEYKKAIQ 174
Query: 144 EKNLK 148
E N +
Sbjct: 175 EYNAR 179
>RGD|1586285 [details] [associations]
symbol:LOC691220 "hypothetical protein LOC691220" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1560584
RGD:1586285 RGD:1588313 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 OrthoDB:EOG4KWJV1 KO:K10802
GeneTree:ENSGT00560000076717 UniGene:Rn.4121 EMBL:CH474054
IPI:IPI00557035 RefSeq:NP_001102843.1 UniGene:Rn.151172
Ensembl:ENSRNOT00000047553 GeneID:679571 KEGG:rno:679571 CTD:434174
NextBio:716771 Uniprot:D3ZCR3
Length = 214
Score = 124 (48.7 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 31/128 (24%), Positives = 61/128 (47%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYE 142
K P P++P + + + ++K ++ L + ++ K +G+MW + D K Y
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPY----- 144
Query: 143 QEKNLKASTKLASISRPTWRAKAKASKPKQ----LRKSREARPKDSGEKMQIGRIDIQPA 198
++K K K P +RAK K K+ KS++ + ++ E+ + + +
Sbjct: 145 EKKAAKLKEKYEK-DIPAYRAKGKPDAAKKGVVKAEKSKKKKEEEDNEEDEEDEEEEEEE 203
Query: 199 EDEDEQED 206
EDEDE++D
Sbjct: 204 EDEDEEDD 211
>RGD|1588313 [details] [associations]
symbol:LOC679451 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1560584
RGD:1586285 RGD:1588313 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 OrthoDB:EOG4KWJV1 KO:K10802
GeneTree:ENSGT00560000076717 UniGene:Rn.4121 EMBL:CH474054
IPI:IPI00557035 RefSeq:NP_001102843.1 UniGene:Rn.151172
Ensembl:ENSRNOT00000047553 GeneID:679571 KEGG:rno:679571 CTD:434174
NextBio:716771 Uniprot:D3ZCR3
Length = 214
Score = 124 (48.7 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 31/128 (24%), Positives = 61/128 (47%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYE 142
K P P++P + + + ++K ++ L + ++ K +G+MW + D K Y
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPY----- 144
Query: 143 QEKNLKASTKLASISRPTWRAKAKASKPKQ----LRKSREARPKDSGEKMQIGRIDIQPA 198
++K K K P +RAK K K+ KS++ + ++ E+ + + +
Sbjct: 145 EKKAAKLKEKYEK-DIPAYRAKGKPDAAKKGVVKAEKSKKKKEEEDNEEDEEDEEEEEEE 203
Query: 199 EDEDEQED 206
EDEDE++D
Sbjct: 204 EDEDEEDD 211
>UNIPROTKB|Q9W602 [details] [associations]
symbol:ssrp1 "FACT complex subunit SSRP1" species:8355
"Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
Pfam:PF03531 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 InterPro:IPR013719 Pfam:PF08512
KO:K09272 InterPro:IPR024954 CTD:6749 HOVERGEN:HBG002932
EMBL:AB004793 EMBL:BC082613 RefSeq:NP_001084164.1 UniGene:Xl.336
ProteinModelPortal:Q9W602 PRIDE:Q9W602 GeneID:399344
KEGG:xla:399344 Xenbase:XB-GENE-994299 Uniprot:Q9W602
Length = 693
Score = 133 (51.9 bits), Expect = 9.3e-06, P = 9.3e-06
Identities = 40/160 (25%), Positives = 79/160 (49%)
Query: 68 VSQKMLTAKTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWR 127
V QK K + + K P P++P+ YM + +++K++N + + ++ K G++W+
Sbjct: 521 VKQKKPRKKPEAKKTKDPGAPKRPMSAYMLWLNASREKIKSENPGISITDLSKKAGEIWK 580
Query: 128 DLPEDQKTEY---VE----DYEQ---EKNLKASTKLASISRPTW--RAKAKASKPKQLRK 175
++ D+K E+ E DYE+ E N A T+ + + T + KA+ S+ K+ +
Sbjct: 581 NMSRDKKEEWDRRAEEAKRDYEKAMKEYNTSAPTEASKKEKKTKGEKKKAETSEKKKQKP 640
Query: 176 SREAR--PKDSGEKMQIGRI---DIQPAEDEDEQEDGYSV 210
S AR PK + E + D ++D +++D +
Sbjct: 641 SSPARAAPKLNSESFKSKEFVSSDDSSSDDSAQKKDSEEI 680
>CGD|CAF0007020 [details] [associations]
symbol:NHP6A species:5476 "Candida albicans" [GO:0003677 "DNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0034724 "DNA replication-independent nucleosome organization"
evidence=IEA] [GO:0070898 "RNA polymerase III transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0051123 "RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008301 "DNA binding, bending" evidence=IEA] InterPro:IPR009071
CGD:CAF0007020 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0006355 GO:GO:0003677 GO:GO:0006281 GO:GO:0006351
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 EMBL:AACQ01000005 EMBL:AACQ01000006 EMBL:AF196333
ProteinModelPortal:Q9UVL1 SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
Length = 92
Score = 108 (43.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 76 KTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKT 135
K R K P P++ L YM ++ + D V+A+N + ++GK++G+ W+ L + K
Sbjct: 7 KKSSRKKKDPDAPKRSLSAYMFFANENRDIVRAENPGISFGQVGKLLGEKWKALNSEDKL 66
Query: 136 EYVEDYEQEK 145
Y E +K
Sbjct: 67 PYENKAEADK 76
>UNIPROTKB|Q9UVL1 [details] [associations]
symbol:NHP6 "Non-histone chromosomal protein 6"
species:237561 "Candida albicans SC5314" [GO:0003677 "DNA binding"
evidence=IDA] InterPro:IPR009071 CGD:CAF0007020 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AACQ01000005
EMBL:AACQ01000006 EMBL:AF196333 ProteinModelPortal:Q9UVL1
SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
Length = 92
Score = 108 (43.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 76 KTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKT 135
K R K P P++ L YM ++ + D V+A+N + ++GK++G+ W+ L + K
Sbjct: 7 KKSSRKKKDPDAPKRSLSAYMFFANENRDIVRAENPGISFGQVGKLLGEKWKALNSEDKL 66
Query: 136 EYVEDYEQEK 145
Y E +K
Sbjct: 67 PYENKAEADK 76
>SGD|S000002157 [details] [associations]
symbol:NHP6B "High-mobility group (HMG) protein, binds to and
remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI] [GO:0070898 "RNA polymerase III
transcriptional preinitiation complex assembly" evidence=IGI;IDA]
[GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=ISS] InterPro:IPR009071
SGD:S000002157 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0006355 GO:GO:0043565 GO:GO:0006281 EMBL:BK006936
GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006366
EMBL:X78993 GO:GO:0031491 GeneTree:ENSGT00560000076898
HOGENOM:HOG000197861 OMA:LANPNNK OrthoDB:EOG4S7P0P GO:GO:0070898
EMBL:X15318 EMBL:Z35957 EMBL:Z35959 EMBL:AY558566 EMBL:EF123125
PIR:S78076 RefSeq:NP_009647.2 ProteinModelPortal:P11633 SMR:P11633
DIP:DIP-6748N IntAct:P11633 MINT:MINT-615533 STRING:P11633
PaxDb:P11633 PeptideAtlas:P11633 EnsemblFungi:YBR089C-A
GeneID:852386 KEGG:sce:YBR089C-A CYGD:YBR089c-a NextBio:971195
Genevestigator:P11633 GermOnline:YBR089C-A Uniprot:P11633
Length = 99
Score = 108 (43.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 76 KTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKT 135
K R K P P++ L YM ++ + D V+++N D+ ++G+I+G+ W+ L ++K
Sbjct: 15 KRTTRRKKDPNAPKRGLSAYMFFANENRDIVRSENPDVTFGQVGRILGERWKALTAEEKQ 74
Query: 136 EYVEDYEQEKNLKASTK 152
Y + +K S K
Sbjct: 75 PYESKAQADKKRYESEK 91
>RGD|620682 [details] [associations]
symbol:Tfam "transcription factor A, mitochondrial" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003682 "chromatin binding" evidence=ISO;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO;IMP;TAS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=ISO;IDA] [GO:0006264
"mitochondrial DNA replication" evidence=TAS] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISO;IMP;TAS]
[GO:0006391 "transcription initiation from mitochondrial promoter"
evidence=ISO;ISS] [GO:0008301 "DNA binding, bending"
evidence=ISO;ISS] [GO:0031072 "heat shock protein binding"
evidence=IPI] [GO:0033108 "mitochondrial respiratory chain complex
assembly" evidence=IEA;ISO] [GO:0042645 "mitochondrial nucleoid"
evidence=ISO;ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0070363
"mitochondrial light strand promoter sense binding"
evidence=ISO;ISS] InterPro:IPR009071 Pfam:PF00505 RGD:620682
GO:GO:0005634 GO:GO:0045893 GO:GO:0003700 GO:GO:0003682
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0042645 GO:GO:0033108 Pfam:PF09011
GO:GO:0006264 GO:GO:0006391 CTD:7019 eggNOG:NOG297801
HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830 GO:GO:0070363
OMA:YENEMKS OrthoDB:EOG4KKZ4D GeneTree:ENSGT00440000039001
EMBL:AB014089 EMBL:AJ312746 EMBL:AF377866 EMBL:BC062022
IPI:IPI00327334 RefSeq:NP_112616.1 UniGene:Rn.18266
ProteinModelPortal:Q91ZW1 STRING:Q91ZW1 PRIDE:Q91ZW1
Ensembl:ENSRNOT00000000753 GeneID:83474 KEGG:rno:83474
UCSC:RGD:620682 InParanoid:Q91ZW1 NextBio:615889
ArrayExpress:Q91ZW1 Genevestigator:Q91ZW1
GermOnline:ENSRNOG00000000613 Uniprot:Q91ZW1
Length = 244
Score = 124 (48.7 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 29/99 (29%), Positives = 56/99 (56%)
Query: 88 PEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNL 147
P+KP+ Y+R+S + + KA++ D K+ E+ + I MWR+LPE +K Y D++ E +
Sbjct: 49 PKKPMSSYLRFSTEQLPKFKAKHPDAKVSELIRKIAAMWRELPEAEKKVYEADFKAEWKV 108
Query: 148 --KASTKLASISRPTW-RAKAKASKPKQLRKSREARPKD 183
+A +K P+ K ++ K+L+K + + ++
Sbjct: 109 YKEAVSKYKEQLTPSQLMGLEKEARQKRLKKKAQIKRRE 147
>UNIPROTKB|P07156 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:10029
"Cricetulus griseus" [GO:0000793 "condensed chromosome"
evidence=ISS] [GO:0006288 "base-excision repair, DNA ligation"
evidence=ISS] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011
GO:GO:0017055 HOVERGEN:HBG009000 GO:GO:0006288 EMBL:Y00365
PIR:A27853 PDB:1HSM PDB:1HSN PDB:1NHM PDB:1NHN PDBsum:1HSM
PDBsum:1HSN PDBsum:1NHM PDBsum:1NHN ProteinModelPortal:P07156
SMR:P07156 PRIDE:P07156 EvolutionaryTrace:P07156 Uniprot:P07156
Length = 180
Score = 118 (46.6 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 31/128 (24%), Positives = 60/128 (46%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYE 142
K P P++P + + + ++K ++ L + ++ K +G+MW + D K Y
Sbjct: 55 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPY----- 109
Query: 143 QEKNLKASTKLASISRPTWRAKAKASKPKQ----LRKSREARPKDSGEKMQIGRIDIQPA 198
++K K K +RAK K K+ KS++ + ++ E+ + + +
Sbjct: 110 EKKAAKLKEKYEK-DIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEEE 168
Query: 199 EDEDEQED 206
EDEDE+ED
Sbjct: 169 EDEDEEED 176
>MGI|MGI:107810 [details] [associations]
symbol:Tfam "transcription factor A, mitochondrial"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISO;TAS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=TAS]
[GO:0005739 "mitochondrion" evidence=ISO;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0006390 "transcription from mitochondrial promoter"
evidence=ISO] [GO:0006391 "transcription initiation from
mitochondrial promoter" evidence=ISO] [GO:0008301 "DNA binding,
bending" evidence=ISO] [GO:0031072 "heat shock protein binding"
evidence=ISO] [GO:0033108 "mitochondrial respiratory chain complex
assembly" evidence=IMP] [GO:0042645 "mitochondrial nucleoid"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0070363 "mitochondrial light
strand promoter sense binding" evidence=ISO] InterPro:IPR009071
EMBL:U57939 MGI:MGI:107810 Pfam:PF00505 GO:GO:0045893 GO:GO:0003700
GO:GO:0003682 GO:GO:0005667 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645
GO:GO:0033108 Pfam:PF09011 GO:GO:0006391 CTD:7019 eggNOG:NOG297801
HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830 GO:GO:0070363
OMA:YENEMKS OrthoDB:EOG4KKZ4D ChiTaRS:TFAM EMBL:U63858
EMBL:BC001987 EMBL:BC083084 EMBL:AK004857 EMBL:AK050446
EMBL:AK167348 EMBL:AK167777 EMBL:AK169808 EMBL:U63712 EMBL:L07107
IPI:IPI00112822 IPI:IPI00230512 PIR:I49745 RefSeq:NP_033386.1
UniGene:Mm.229292 ProteinModelPortal:P40630 SMR:P40630
IntAct:P40630 STRING:P40630 PhosphoSite:P40630 PaxDb:P40630
PRIDE:P40630 Ensembl:ENSMUST00000092430 Ensembl:ENSMUST00000105432
Ensembl:ENSMUST00000121685 GeneID:21780 KEGG:mmu:21780
UCSC:uc007fol.1 UCSC:uc007fom.1 GeneTree:ENSGT00440000039001
InParanoid:P40630 NextBio:301118 Bgee:P40630 CleanEx:MM_TFAM
Genevestigator:P40630 GermOnline:ENSMUSG00000003923 Uniprot:P40630
Length = 243
Score = 123 (48.4 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 41/131 (31%), Positives = 65/131 (49%)
Query: 88 PEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQE-KN 146
P+KP+ Y+R+S + + KA++ D KL E+ + I +WR+LPE +K Y D++ E K
Sbjct: 49 PKKPMSSYLRFSTEQLPKFKAKHPDAKLSELVRKIAALWRELPEAEKKVYEADFKAEWKA 108
Query: 147 LK-ASTKLASISRPTW------RAKAKASKPKQLRKSRE----ARPKD--SGEKMQIGRI 193
K A +K P+ A+ + K K L K RE +PK S + +
Sbjct: 109 YKEAVSKYKEQLTPSQLMGMEKEARQRRLKKKALVKRRELILLGKPKRPRSAYNIYVSE- 167
Query: 194 DIQPAEDEDEQ 204
Q A+D+ Q
Sbjct: 168 SFQEAKDDSAQ 178
>UNIPROTKB|P0CB47 [details] [associations]
symbol:UBTFL1 "Putative upstream-binding factor 1-like
protein 1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0007275 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HOGENOM:HOG000232068 EMBL:AP000827 IPI:IPI00921220
RefSeq:NP_001137447.1 UniGene:Hs.719885 ProteinModelPortal:P0CB47
SMR:P0CB47 STRING:P0CB47 PhosphoSite:P0CB47 DMDM:263545802
PaxDb:P0CB47 PRIDE:P0CB47 GeneID:642623 KEGG:hsa:642623
UCSC:uc010rub.2 CTD:642623 GeneCards:GC11P089819 HGNC:HGNC:14533
MIM:613696 neXtProt:NX_P0CB47 PharmGKB:PA164727456 eggNOG:NOG260929
OrthoDB:EOG47H5Q8 GenomeRNAi:642623 NextBio:114002 Uniprot:P0CB47
Length = 393
Score = 127 (49.8 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 32/101 (31%), Positives = 52/101 (51%)
Query: 70 QKMLTAKTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDL 129
+KM ++ GP PK +PL Y R+ ++ W Q ++ E+ KI+ + +R+L
Sbjct: 85 KKMNKSQKYRNGPDFPK---RPLTAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYREL 141
Query: 130 PEDQKTEYVEDYEQEKNLKASTKLASI--SRPTWRAKAKAS 168
PE K +Y++D+ +EK + KLA P KAK S
Sbjct: 142 PEQMKQKYIQDFRKEKQ-EFEEKLARFREEHPDLVQKAKKS 181
>RGD|1589841 [details] [associations]
symbol:LOC690940 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001076232 Ncbi:XP_001076232
Length = 214
Score = 121 (47.7 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 31/128 (24%), Positives = 60/128 (46%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYE 142
K P P++P + + + ++K ++ L + ++ K +G+MW + D K Y
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTASDDKQPY----- 144
Query: 143 QEKNLKASTKLASISRPTWRAKAKASKPKQ----LRKSREARPKDSGEKMQIGRIDIQPA 198
++K K K +RAK K K+ KS++ + ++ E+ + + +
Sbjct: 145 EKKAAKLKEKYEK-DTAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEEE 203
Query: 199 EDEDEQED 206
EDEDE+ED
Sbjct: 204 EDEDEEED 211
>RGD|1593466 [details] [associations]
symbol:LOC689398 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001068941 Ncbi:XP_001068941
Length = 214
Score = 121 (47.7 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 31/128 (24%), Positives = 60/128 (46%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYE 142
K P P++P + + + ++K ++ L + ++ K +G+MW + D K Y
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTASDDKQPY----- 144
Query: 143 QEKNLKASTKLASISRPTWRAKAKASKPKQ----LRKSREARPKDSGEKMQIGRIDIQPA 198
++K K K +RAK K K+ KS++ + ++ E+ + + +
Sbjct: 145 EKKAAKLKEKYEK-DTAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEEE 203
Query: 199 EDEDEQED 206
EDEDE+ED
Sbjct: 204 EDEDEEED 211
>SGD|S000006256 [details] [associations]
symbol:NHP6A "High-mobility group (HMG) protein, binds to and
remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
[GO:0032301 "MutSalpha complex" evidence=IDA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0070898 "RNA polymerase
III transcriptional preinitiation complex assembly"
evidence=IGI;IDA] [GO:0006338 "chromatin remodeling" evidence=IGI]
[GO:0034724 "DNA replication-independent nucleosome organization"
evidence=IDA] [GO:0051123 "RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0008301 "DNA binding, bending"
evidence=IDA] [GO:0031491 "nucleosome binding" evidence=IDA]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IC] InterPro:IPR009071 SGD:S000006256 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0043565
GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006298
EMBL:Z71255 EMBL:BK006949 GO:GO:0031491 EMBL:Z49219
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861 GO:GO:0051123
EMBL:M95912 EMBL:X15317 EMBL:AY693230 PIR:A35072 RefSeq:NP_015377.1
PDB:1CG7 PDB:1J5N PDB:1LWM PDBsum:1CG7 PDBsum:1J5N PDBsum:1LWM
DisProt:DP00432 ProteinModelPortal:P11632 SMR:P11632 IntAct:P11632
MINT:MINT-2785986 STRING:P11632 PaxDb:P11632 PeptideAtlas:P11632
EnsemblFungi:YPR052C GeneID:856165 KEGG:sce:YPR052C CYGD:YPR052c
OMA:FFANDNR OrthoDB:EOG4S7P0P EvolutionaryTrace:P11632
NextBio:981313 Genevestigator:P11632 GermOnline:YPR052C
GO:GO:0034724 GO:GO:0070898 Uniprot:P11632
Length = 93
Score = 105 (42.0 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 22/77 (28%), Positives = 40/77 (51%)
Query: 76 KTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKT 135
K R K P P++ L YM ++ + D V+++N D+ ++GK +G+ W+ L ++K
Sbjct: 9 KRTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQ 68
Query: 136 EYVEDYEQEKNLKASTK 152
Y + +K S K
Sbjct: 69 PYEAKAQADKKRYESEK 85
>FB|FBgn0010228 [details] [associations]
symbol:HmgZ "HMG protein Z" species:7227 "Drosophila
melanogaster" [GO:0003677 "DNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=NAS] InterPro:IPR009071 Pfam:PF00505
EMBL:AE013599 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
eggNOG:NOG320947 GeneTree:ENSGT00700000104547 EMBL:X71139
EMBL:AY113439 PIR:S41765 RefSeq:NP_726106.1 RefSeq:NP_726107.1
UniGene:Dm.20604 ProteinModelPortal:Q06943 SMR:Q06943 PaxDb:Q06943
PRIDE:Q06943 EnsemblMetazoa:FBtr0071673 EnsemblMetazoa:FBtr0071674
GeneID:37480 KEGG:dme:Dmel_CG17921 CTD:37480 FlyBase:FBgn0010228
InParanoid:Q06943 OMA:EANGGTD OrthoDB:EOG4W0VWS PhylomeDB:Q06943
ChiTaRS:HmgZ GenomeRNAi:37480 NextBio:803858 Bgee:Q06943
GermOnline:CG17921 Uniprot:Q06943
Length = 111
Score = 104 (41.7 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 31/108 (28%), Positives = 57/108 (52%)
Query: 88 PEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPE----DQKT-EYVEDYE 142
P++PL YM + + +Q+K N K+ +I K G++WR L + +QK + E+Y
Sbjct: 6 PKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGLKDKTEWEQKAIKMKEEYN 65
Query: 143 QE-KNLKASTKLASISRPTWRAKAKASKPKQLRKSREARPKDSGEKMQ 189
+ K +A+ S P R KA A+KP + K +E+ ++ ++ +
Sbjct: 66 KAVKEYEANGGTDS-GAPKKRKKA-AAKPAKKAKKKESSEEEEEDESE 111
>UNIPROTKB|F1STP6 [details] [associations]
symbol:LOC100623257 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0010468 "regulation of gene expression"
evidence=IEA] [GO:0007566 "embryo implantation" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001832 "blastocyst growth" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00530000063934
OMA:LTAYIRF EMBL:FP565680 Ensembl:ENSSSCT00000016286 Uniprot:F1STP6
Length = 383
Score = 124 (48.7 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 33/108 (30%), Positives = 57/108 (52%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYE 142
K P P+KPL Y+R+ ++ Q ++ L E+ K++ + ++ LPE K +Y +D++
Sbjct: 95 KHPDFPKKPLTSYIRFFTEMRPQYLQKHPQLSNQELTKVLSEEYKKLPEQMKLKYTQDFQ 154
Query: 143 QEKNLKASTKLASISRPTWRAKAKASKPKQLRKSRE-ARPKDSGEKMQ 189
+EK + K+A K P +RKSR+ A PK S ++Q
Sbjct: 155 KEKQ-EFEEKMAQF---------KEQHPDLVRKSRKSAVPKGSQSRLQ 192
>MGI|MGI:2181659 [details] [associations]
symbol:Tox "thymocyte selection-associated high mobility
group box" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:2181659 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00560000076898
HOGENOM:HOG000230949 HOVERGEN:HBG051183 eggNOG:NOG284736 CTD:9760
OMA:CRNPPAQ OrthoDB:EOG44XJGQ EMBL:AF472514 EMBL:AK029694
EMBL:AK038671 EMBL:AK051947 EMBL:BC080732 IPI:IPI00471452
IPI:IPI00754510 RefSeq:NP_663757.3 UniGene:Mm.435828
UniGene:Mm.488241 PDB:2CO9 PDBsum:2CO9 ProteinModelPortal:Q66JW3
SMR:Q66JW3 PhosphoSite:Q66JW3 PaxDb:Q66JW3 PRIDE:Q66JW3
Ensembl:ENSMUST00000039987 GeneID:252838 KEGG:mmu:252838
UCSC:uc008rxt.1 InParanoid:Q66JW3 ChiTaRS:TOX
EvolutionaryTrace:Q66JW3 NextBio:387345 Bgee:Q66JW3
Genevestigator:Q66JW3 GermOnline:ENSMUSG00000041272 Uniprot:Q66JW3
Length = 526
Score = 126 (49.4 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 44/140 (31%), Positives = 67/140 (47%)
Query: 52 SLTMHQ-HCQRVSRRGNVSQKMLTAKTDGRGPKAPK------P--PEKPLMPYMRYSRKV 102
S ++H+ C+ S+ N +K A G+ PK PK P P+KP+ Y + R
Sbjct: 218 SSSVHEDECEDASKI-NGGEKR-PASDMGKKPKTPKKKKKKDPNEPQKPVSAYALFFRDT 275
Query: 103 WDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKN--LK--ASTKLASISR 158
+K QN + E+ KI+ MW L E+QK Y + E K LK A+ + + +S+
Sbjct: 276 QAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRASLVSK 335
Query: 159 P-TWRAKAKASKPKQLRKSR 177
T K S+P QL S+
Sbjct: 336 SYTDPVDVKTSQPPQLVNSK 355
>TAIR|locus:2136103 [details] [associations]
symbol:3xHMG-box1 "3xHigh Mobility Group-box1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
EMBL:AL161531 GO:GO:0003677 GO:GO:0003700 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AF080120 EMBL:AL049876 HSSP:P07155 EMBL:AY133687 EMBL:AJ630485
EMBL:AY568657 IPI:IPI00533286 PIR:T01926 PIR:T08187
RefSeq:NP_192846.1 UniGene:At.33587 ProteinModelPortal:Q9T012
SMR:Q9T012 EnsemblPlants:AT4G11080.1 GeneID:826709
KEGG:ath:AT4G11080 TAIR:At4g11080 HOGENOM:HOG000238964
InParanoid:Q9T012 KO:K09273 OMA:CKDQWNE PhylomeDB:Q9T012
ProtClustDB:CLSN2686000 Genevestigator:Q9T012 Uniprot:Q9T012
Length = 446
Score = 114 (45.2 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 25/89 (28%), Positives = 45/89 (50%)
Query: 69 SQKMLTAKTDGRGPKAPKP---PEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQM 125
SQ + + + +G K K ++P PY+ + + W++VK QN + E I+G
Sbjct: 107 SQSLAQTEEEKKGKKKKKDCAETKRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAK 166
Query: 126 WRDLPEDQKTEYVEDYEQEKN--LKASTK 152
W+ + ++K Y E Y+ +K L+ TK
Sbjct: 167 WKGISAEEKKPYEEKYQADKEAYLQVITK 195
Score = 51 (23.0 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 246 MQVLKRQVQSLTMHQKKLEAELQQI--EEKFEAKKRKFVESSEQFQEELKKEKASCSENE 303
M+ KR + M QKK E E ++ +E + K+K E ++ ++ K+ + +NE
Sbjct: 308 MEGYKRTKEEEAMSQKKEEEEFMKLHKQEALQLLKKK--EKTDNIIKKTKETAKNKKKNE 365
>UNIPROTKB|Q6YKA4 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9615
"Canis lupus familiaris" [GO:0070491 "repressing transcription
factor binding" evidence=IEA] [GO:0043388 "positive regulation of
DNA binding" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0009986 "cell surface" evidence=IEA] [GO:0006288 "base-excision
repair, DNA ligation" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0002437 "inflammatory response to antigenic stimulus"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0003700 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065
GO:GO:0043280 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0033151 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 EMBL:AY135519 EMBL:AY135521
RefSeq:NP_001002937.1 UniGene:Cfa.416 ProteinModelPortal:Q6YKA4
SMR:Q6YKA4 STRING:Q6YKA4 PRIDE:Q6YKA4 Ensembl:ENSCAFT00000010639
GeneID:403170 KEGG:cfa:403170 InParanoid:Q6YKA4 NextBio:20816914
Uniprot:Q6YKA4
Length = 215
Score = 118 (46.6 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 31/128 (24%), Positives = 60/128 (46%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYE 142
K P P++P + + + ++K ++ L + ++ K +G+MW + D K Y
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPY----- 144
Query: 143 QEKNLKASTKLASISRPTWRAKAKASKPKQ----LRKSREARPKDSGEKMQIGRIDIQPA 198
++K K K +RAK K K+ KS++ + ++ E+ + + +
Sbjct: 145 EKKAAKLKEKYEK-DIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDE 203
Query: 199 EDEDEQED 206
EDEDE+ED
Sbjct: 204 EDEDEEED 211
>UNIPROTKB|P09429 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0001654 "eye development" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0010858
"calcium-dependent protein kinase regulator activity" evidence=IEA]
[GO:0030295 "protein kinase activator activity" evidence=IEA]
[GO:0030324 "lung development" evidence=IEA] [GO:0043005 "neuron
projection" evidence=IEA] [GO:0045639 "positive regulation of
myeloid cell differentiation" evidence=IEA] [GO:0045819 "positive
regulation of glycogen catabolic process" evidence=IEA] [GO:0051384
"response to glucocorticoid stimulus" evidence=IEA] [GO:2000426
"negative regulation of apoptotic cell clearance" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IDA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IDA]
[GO:0031175 "neuron projection development" evidence=ISS]
[GO:0050786 "RAGE receptor binding" evidence=ISS] [GO:0043388
"positive regulation of DNA binding" evidence=IDA] [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IDA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IDA] [GO:0005125 "cytokine activity"
evidence=ISS] [GO:0001773 "myeloid dendritic cell activation"
evidence=ISS] [GO:0002407 "dendritic cell chemotaxis" evidence=ISS]
[GO:0042056 "chemoattractant activity" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=ISS] [GO:0009986 "cell surface" evidence=IDA]
[GO:0002437 "inflammatory response to antigenic stimulus"
evidence=IEP] [GO:0005615 "extracellular space" evidence=IDA]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0008301 "DNA
binding, bending" evidence=ISS;IMP] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0017053 "transcriptional repressor complex"
evidence=IDA] [GO:0033151 "V(D)J recombination" evidence=IDA]
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0070491
"repressing transcription factor binding" evidence=IPI] [GO:0005576
"extracellular region" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006309 "apoptotic DNA fragmentation"
evidence=TAS] [GO:0006915 "apoptotic process" evidence=TAS]
[GO:0006921 "cellular component disassembly involved in execution
phase of apoptosis" evidence=TAS] [GO:0045087 "innate immune
response" evidence=TAS] [GO:0050918 "positive chemotaxis"
evidence=ISS] Reactome:REACT_578 InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005737
Reactome:REACT_6900 GO:GO:0005615 GO:GO:0005654 GO:GO:0009986
GO:GO:0002437 GO:GO:0003684 GO:GO:0030324 EMBL:CH471075
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0045087
GO:GO:0003700 GO:GO:0045860 GO:GO:0030295 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0043065 GO:GO:0003690 GO:GO:0003697
GO:GO:0043280 GO:GO:0045819 GO:GO:0005125 GO:GO:0006309
GO:GO:0000793 Pathway_Interaction_DB:amb2_neutrophils_pathway
GO:GO:0042056 GO:GO:0031175 GO:GO:0001654 GO:GO:0043388
GO:GO:0002407 GO:GO:0001773 Pfam:PF09011 GO:GO:0033151
GO:GO:0006265 GO:GO:0045639 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861
OMA:GEDAMRK KO:K10802 GO:GO:0017055 CTD:3146 HOVERGEN:HBG009000
GO:GO:0006288 EMBL:X12597 EMBL:U51677 EMBL:D63874 EMBL:EF157968
EMBL:AY377859 EMBL:AK291494 EMBL:AK122825 EMBL:CR749614
EMBL:CR456863 EMBL:BT006940 EMBL:BT020159 EMBL:EU012027
EMBL:AL353648 EMBL:BC003378 EMBL:BC030981 EMBL:BC066889
EMBL:BC067732 EMBL:BC141844 IPI:IPI00419258 PIR:S02826
RefSeq:NP_002119.1 UniGene:Hs.434102 UniGene:Hs.593339
UniGene:Hs.596078 UniGene:Hs.741195 PDB:2LY4 PDB:2YRQ PDBsum:2LY4
PDBsum:2YRQ ProteinModelPortal:P09429 SMR:P09429 DIP:DIP-24195N
IntAct:P09429 MINT:MINT-153055 STRING:P09429 PhosphoSite:P09429
DMDM:123369 DOSAC-COBS-2DPAGE:P09429 PaxDb:P09429
PeptideAtlas:P09429 PRIDE:P09429 DNASU:3146 Ensembl:ENST00000339872
Ensembl:ENST00000341423 Ensembl:ENST00000399494
Ensembl:ENST00000405805 GeneID:3146 KEGG:hsa:3146 UCSC:uc001usx.3
GeneCards:GC13M031032 H-InvDB:HIX0030745 HGNC:HGNC:4983
HPA:CAB005873 HPA:HPA003506 MIM:163905 neXtProt:NX_P09429
PharmGKB:PA188 InParanoid:P09429 PhylomeDB:P09429 ChiTaRS:HMGB1
EvolutionaryTrace:P09429 GenomeRNAi:3146 NextBio:12470
ArrayExpress:P09429 Bgee:P09429 CleanEx:HS_HMGB1
Genevestigator:P09429 GermOnline:ENSG00000189403 GO:GO:0010858
GO:GO:0050786 GO:GO:2000426 Uniprot:P09429
Length = 215
Score = 118 (46.6 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 31/128 (24%), Positives = 60/128 (46%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYE 142
K P P++P + + + ++K ++ L + ++ K +G+MW + D K Y
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPY----- 144
Query: 143 QEKNLKASTKLASISRPTWRAKAKASKPKQ----LRKSREARPKDSGEKMQIGRIDIQPA 198
++K K K +RAK K K+ KS++ + ++ E+ + + +
Sbjct: 145 EKKAAKLKEKYEK-DIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDE 203
Query: 199 EDEDEQED 206
EDEDE+ED
Sbjct: 204 EDEDEEED 211
>RGD|2802 [details] [associations]
symbol:Hmgb1 "high mobility group box 1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0000400 "four-way
junction DNA binding" evidence=IDA] [GO:0000401 "open form four-way
junction DNA binding" evidence=IDA] [GO:0000402 "crossed form
four-way junction DNA binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=IMP] [GO:0001654 "eye development" evidence=ISO] [GO:0001934
"positive regulation of protein phosphorylation" evidence=ISO]
[GO:0002053 "positive regulation of mesenchymal cell proliferation"
evidence=IDA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=ISO] [GO:0003681 "bent DNA binding" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0005125 "cytokine activity" evidence=ISO;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005615
"extracellular space" evidence=ISO;IDA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0006288 "base-excision repair, DNA
ligation" evidence=ISO] [GO:0006357 "regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0006935 "chemotaxis"
evidence=IDA] [GO:0007399 "nervous system development" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=IEP] [GO:0008097 "5S rRNA
binding" evidence=IDA] [GO:0008134 "transcription factor binding"
evidence=ISO;IDA] [GO:0008156 "negative regulation of DNA
replication" evidence=IDA] [GO:0008201 "heparin binding"
evidence=IDA;TAS] [GO:0008284 "positive regulation of cell
proliferation" evidence=IDA] [GO:0008301 "DNA binding, bending"
evidence=ISO;IDA] [GO:0009408 "response to heat" evidence=IEP]
[GO:0009749 "response to glucose stimulus" evidence=IEP] [GO:0009986
"cell surface" evidence=ISO] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=ISO] [GO:0010942 "positive
regulation of cell death" evidence=IMP] [GO:0010976 "positive
regulation of neuron projection development" evidence=IMP]
[GO:0014911 "positive regulation of smooth muscle cell migration"
evidence=IMP] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISO]
[GO:0030295 "protein kinase activator activity" evidence=ISO]
[GO:0030324 "lung development" evidence=ISO] [GO:0030335 "positive
regulation of cell migration" evidence=IDA] [GO:0031175 "neuron
projection development" evidence=IGI] [GO:0031532 "actin cytoskeleton
reorganization" evidence=IMP] [GO:0032392 "DNA geometric change"
evidence=IDA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEP] [GO:0032868 "response to insulin stimulus"
evidence=IEP] [GO:0033034 "positive regulation of myeloid cell
apoptotic process" evidence=IDA] [GO:0033151 "V(D)J recombination"
evidence=ISO] [GO:0034341 "response to interferon-gamma"
evidence=IMP] [GO:0042277 "peptide binding" evidence=IDA] [GO:0042493
"response to drug" evidence=IEP] [GO:0043005 "neuron projection"
evidence=ISO] [GO:0043065 "positive regulation of apoptotic process"
evidence=ISO;IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=ISO]
[GO:0043388 "positive regulation of DNA binding" evidence=ISO]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=ISO] [GO:0045663 "positive regulation of myoblast
differentiation" evidence=IMP] [GO:0045819 "positive regulation of
glycogen catabolic process" evidence=ISO] [GO:0045931 "positive
regulation of mitotic cell cycle" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046983 "protein dimerization activity"
evidence=IDA] [GO:0050727 "regulation of inflammatory response"
evidence=IDA] [GO:0050786 "RAGE receptor binding" evidence=IMP;IPI]
[GO:0050831 "male-specific defense response to bacterium"
evidence=IDA] [GO:0050930 "induction of positive chemotaxis"
evidence=IDA] [GO:0051384 "response to glucocorticoid stimulus"
evidence=ISO] [GO:0051450 "myoblast proliferation" evidence=IMP]
[GO:0051861 "glycolipid binding" evidence=IDA] [GO:0070491
"repressing transcription factor binding" evidence=ISO] [GO:0071347
"cellular response to interleukin-1" evidence=IEP] [GO:0017053
"transcriptional repressor complex" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:2802
GO:GO:0005634 GO:GO:0005737 GO:GO:0005694 GO:GO:0005615 GO:GO:0010976
GO:GO:0042493 GO:GO:0045931 GO:GO:0007623 GO:GO:0009749 GO:GO:0032496
GO:GO:0008201 GO:GO:0009408 GO:GO:0006935 GO:GO:0032868 GO:GO:0046983
eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0031532 GO:GO:0050727
GO:GO:0042277 GO:GO:0003690 GO:GO:0003697 GO:GO:0000902 GO:GO:0033034
GO:GO:0005125 GO:GO:0008134 GO:GO:0031175 GO:GO:0071347 GO:GO:0050930
GO:GO:0008156 GO:GO:0034341 GO:GO:0002053 GO:GO:0014911 GO:GO:0045663
GO:GO:0008097 GO:GO:0003681 GO:GO:0051861 Pfam:PF09011 GO:GO:0051450
OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 KO:K10802 CTD:3146
HOVERGEN:HBG009000 GO:GO:0050786 EMBL:M64986 EMBL:Y00463
EMBL:AF275734 EMBL:BC061779 EMBL:BC081839 EMBL:BC088402
IPI:IPI00555214 PIR:A41175 RefSeq:NP_037095.1 UniGene:Rn.144565
UniGene:Rn.15185 UniGene:Rn.4121 PDB:1AAB PDB:1CKT PDB:1HME PDB:1HMF
PDB:2GZK PDBsum:1AAB PDBsum:1CKT PDBsum:1HME PDBsum:1HMF PDBsum:2GZK
ProteinModelPortal:P63159 SMR:P63159 STRING:P63159 PhosphoSite:P63159
PRIDE:P63159 GeneID:25459 KEGG:rno:25459 InParanoid:P63159
EvolutionaryTrace:P63159 NextBio:606729 ArrayExpress:P63159
Genevestigator:P63159 GermOnline:ENSRNOG00000030351 GO:GO:0000402
GO:GO:0000401 GO:GO:0032392 GO:GO:0050831 Uniprot:P63159
Length = 215
Score = 118 (46.6 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 31/128 (24%), Positives = 60/128 (46%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYE 142
K P P++P + + + ++K ++ L + ++ K +G+MW + D K Y
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPY----- 144
Query: 143 QEKNLKASTKLASISRPTWRAKAKASKPKQ----LRKSREARPKDSGEKMQIGRIDIQPA 198
++K K K +RAK K K+ KS++ + ++ E+ + + +
Sbjct: 145 EKKAAKLKEKYEK-DIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEEE 203
Query: 199 EDEDEQED 206
EDEDE+ED
Sbjct: 204 EDEDEEED 211
>MGI|MGI:3039593 [details] [associations]
symbol:Tox3 "TOX high mobility group box family member 3"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0019722 "calcium-mediated signaling"
evidence=ISO] [GO:0034056 "estrogen response element binding"
evidence=ISO] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0051219
"phosphoprotein binding" evidence=ISO] InterPro:IPR009071
PROSITE:PS00353 MGI:MGI:3039593 Pfam:PF00505 GO:GO:0005634
GO:GO:0006915 GO:GO:0045893 GO:GO:0042803 GO:GO:0043524
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0034056
GeneTree:ENSGT00560000076898 HOGENOM:HOG000230949
HOVERGEN:HBG051183 HSSP:Q66JW3 CTD:27324 eggNOG:NOG284736
OMA:HSLIMRS ChiTaRS:TOX3 EMBL:AK082602 EMBL:BC052044
IPI:IPI00330486 RefSeq:NP_766501.2 UniGene:Mm.302755
ProteinModelPortal:Q80W03 SMR:Q80W03 STRING:Q80W03
PhosphoSite:Q80W03 PaxDb:Q80W03 PRIDE:Q80W03
Ensembl:ENSMUST00000109621 GeneID:244579 KEGG:mmu:244579
UCSC:uc009msb.2 InParanoid:Q80W03 OrthoDB:EOG4K0QNS NextBio:386323
Bgee:Q80W03 CleanEx:MM_TOX3 Genevestigator:Q80W03 Uniprot:Q80W03
Length = 575
Score = 115 (45.5 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 34/102 (33%), Positives = 46/102 (45%)
Query: 74 TAKTDGRGPKAPK------P--PEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQM 125
TA G+ PK PK P P+KP+ Y + R +K QN + E+ KI+ M
Sbjct: 232 TAPDSGKKPKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASM 291
Query: 126 WRDLPEDQKTEYVEDYEQEKNLKASTKLASISRPTWRAKAKA 167
W L E+QK Y E K K K + R + +KA A
Sbjct: 292 WDSLGEEQKQVYKRKTEAAK--KEYLKALAAYRASLVSKAAA 331
Score = 52 (23.4 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 11/54 (20%), Positives = 29/54 (53%)
Query: 245 RMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQ--FQEELKKEK 296
+ Q+ + Q Q L HQ + + Q ++ F+ ++ ++ +Q Q++L +++
Sbjct: 451 QQQMQQMQQQQLQQHQMHQQIQQQMQQQHFQHHMQQHLQQQQQQHLQQQLSQQQ 504
Score = 45 (20.9 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 12/57 (21%), Positives = 36/57 (63%)
Query: 247 QVLKRQVQSLTMHQKKLEAELQQ------IEEKFEAKKRKFVE---SSEQFQEELKK 294
Q+ ++Q+Q MHQ+ ++ ++QQ +++ + ++++ ++ S +Q Q++L++
Sbjct: 456 QMQQQQLQQHQMHQQ-IQQQMQQQHFQHHMQQHLQQQQQQHLQQQLSQQQLQQQLQQ 511
>UNIPROTKB|A8MRB2 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9606 "Homo sapiens" [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005739
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 CTD:7019 HOGENOM:HOG000139423 HOVERGEN:HBG106674
KO:K11830 EMBL:AC023170 UniGene:Hs.594250 GeneID:7019 KEGG:hsa:7019
HGNC:HGNC:11741 ChiTaRS:TFAM IPI:IPI00644515 RefSeq:NP_001257711.1
ProteinModelPortal:A8MRB2 SMR:A8MRB2 STRING:A8MRB2
Ensembl:ENST00000373895 ArrayExpress:A8MRB2 Bgee:A8MRB2
Uniprot:A8MRB2
Length = 214
Score = 117 (46.2 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 88 PEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQE 144
P+KP+ Y+R+S++ KAQN D K E+ + I Q WR+LP+ +K Y + Y E
Sbjct: 50 PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAE 106
>UNIPROTKB|F1REZ8 [details] [associations]
symbol:TOX3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051219 "phosphoprotein binding" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0034056 "estrogen response element
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893
GO:GO:0043524 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0034056
GeneTree:ENSGT00560000076898 OMA:HSLIMRS EMBL:CU442721
EMBL:CU457410 Ensembl:ENSSSCT00000003136 Uniprot:F1REZ8
Length = 542
Score = 110 (43.8 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 28/85 (32%), Positives = 39/85 (45%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYE 142
K P P+KP+ Y + R +K QN + E+ KI+ MW L E+QK Y E
Sbjct: 221 KDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTE 280
Query: 143 QEKNLKASTKLASISRPTWRAKAKA 167
K K K + R + +KA A
Sbjct: 281 AAK--KEYLKALAAYRASLVSKAAA 303
Score = 56 (24.8 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 9/52 (17%), Positives = 28/52 (53%)
Query: 245 RMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELKKEK 296
+ Q+ + Q Q L HQ + + Q ++ F+ ++ ++ + Q+++ +++
Sbjct: 420 QQQMQQMQQQQLQQHQMHQQIQQQMQQQHFQHHMQQHLQQQQHLQQQINQQQ 471
>UNIPROTKB|F1LZG8 [details] [associations]
symbol:F1LZG8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00560402
Ensembl:ENSRNOT00000043102 Uniprot:F1LZG8
Length = 203
Score = 116 (45.9 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 38/148 (25%), Positives = 68/148 (45%)
Query: 66 GNVSQKMLTAKTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQM 125
G + K + P AP+PP L RY K K ++ DL + ++ K +G M
Sbjct: 64 GKADKAHYETKKKFKDPSAPEPPSAFLF-CSRYHSKT----KGEHPDLSIGDVAKKLGLM 118
Query: 126 WRDLPEDQKT-------EYVEDYEQEKNLKASTKLASISRPTWRAKAKASKPKQLRKSRE 178
W + ED K + E +E++ +A A R KAK SK K++ + E
Sbjct: 119 WNNTAEDDKQPIKKKAFKLKEKFEKDIAYRAKENNAG-KREV--VKAKRSKKKKVEEDDE 175
Query: 179 ARPKDSGEKMQIGRIDIQPAEDEDEQED 206
+D ++++ + + + E+E+E+E+
Sbjct: 176 EDEEDEKKEVEEEKEEEEEEEEEEEEEE 203
>UNIPROTKB|G4MS97 [details] [associations]
symbol:MGG_04489 "Non-histone chromosomal protein 6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR009071 Pfam:PF00505
GO:GO:0043565 GO:GO:0006338 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CM001231
GO:GO:0031491 GO:GO:0051123 GO:GO:0032301 GO:GO:0034724
GO:GO:0070898 RefSeq:XP_003710967.1 ProteinModelPortal:G4MS97
SMR:G4MS97 EnsemblFungi:MGG_04489T0 GeneID:2678075
KEGG:mgr:MGG_04489 Uniprot:G4MS97
Length = 101
Score = 101 (40.6 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 80 RGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEY 137
R K P P++ L YM ++ + D V+ +N + ++GKI+G+ W+ L + Q+ Y
Sbjct: 16 RAKKDPMAPKRGLSAYMFFANEQRDNVREENPGVTFGQVGKILGERWKALSDKQRAPY 73
>UNIPROTKB|C9JQA7 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0033234 "negative
regulation of protein sumoylation" evidence=IEA] [GO:0045666
"positive regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC005786 HOGENOM:HOG000247029
HGNC:HGNC:5002 ChiTaRS:HMG20B EMBL:AC116968 IPI:IPI00878211
ProteinModelPortal:C9JQA7 SMR:C9JQA7 STRING:C9JQA7
Ensembl:ENST00000453933 ArrayExpress:C9JQA7 Bgee:C9JQA7
Uniprot:C9JQA7
Length = 142
Score = 103 (41.3 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 23/89 (25%), Positives = 47/89 (52%)
Query: 61 RVSRRGNVSQKMLTAKTDGRGPKA----PKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLW 116
R +G+ ++ + + +G K P P+ P+ Y+R+ + +Q++ ++ DL
Sbjct: 39 RAGEKGSHEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFP 98
Query: 117 EIGKIIGQMWRDLPEDQKTEYVEDYEQEK 145
EI K++G W L +K Y+++ E+EK
Sbjct: 99 EITKMLGAEWSKLQPTEKQRYLDEAEREK 127
>RGD|1311529 [details] [associations]
symbol:Tox3 "TOX high mobility group box family member 3"
species:10116 "Rattus norvegicus" [GO:0003682 "chromatin binding"
evidence=ISO;ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0019722 "calcium-mediated signaling"
evidence=IDA] [GO:0034056 "estrogen response element binding"
evidence=ISO;ISS] [GO:0042803 "protein homodimerization activity"
evidence=ISO;ISS] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=ISO;ISS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO;IDA]
[GO:0051219 "phosphoprotein binding" evidence=ISO]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 RGD:1311529
GO:GO:0005634 GO:GO:0006915 GO:GO:0045893 GO:GO:0042803
GO:GO:0019722 GO:GO:0043524 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0034056 HOVERGEN:HBG051183 eggNOG:NOG284736 OrthoDB:EOG4K0QNS
EMBL:EU194254 IPI:IPI00371454 UniGene:Rn.41060
Genevestigator:B7SBD2 Uniprot:B7SBD2
Length = 577
Score = 116 (45.9 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 36/108 (33%), Positives = 49/108 (45%)
Query: 68 VSQKMLTAKTDGRGPKAPK------P--PEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIG 119
V +K TA G+ PK PK P P+KP+ Y + R +K QN + E+
Sbjct: 227 VGEKR-TAPDSGKKPKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVS 285
Query: 120 KIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASISRPTWRAKAKA 167
KI+ MW L E+QK Y E K K K + R + +KA A
Sbjct: 286 KIVASMWDSLGEEQKQVYKRKTEAAK--KEYLKALAAYRASLVSKAAA 331
Score = 49 (22.3 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 10/54 (18%), Positives = 29/54 (53%)
Query: 245 RMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQ--FQEELKKEK 296
+ Q+ + Q Q L HQ + + Q ++ F+ ++ ++ +Q Q+++ +++
Sbjct: 452 QQQMQQMQHQQLQQHQMHQQIQQQMQQQHFQHHMQQHLQQQQQQHLQQQISQQQ 505
Score = 43 (20.2 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 12/57 (21%), Positives = 35/57 (61%)
Query: 247 QVLKRQVQSLTMHQKKLEAELQQ------IEEKFEAKKRKFVE---SSEQFQEELKK 294
Q+ +Q+Q MHQ+ ++ ++QQ +++ + ++++ ++ S +Q Q++L++
Sbjct: 457 QMQHQQLQQHQMHQQ-IQQQMQQQHFQHHMQQHLQQQQQQHLQQQISQQQLQQQLQQ 512
Score = 40 (19.1 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 7/36 (19%), Positives = 20/36 (55%)
Query: 245 RMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRK 280
+ Q+ ++Q+Q +L+ +LQ ++ + + R+
Sbjct: 498 QQQISQQQLQQQLQQHLQLQQQLQHMQHQSQPSPRQ 533
Score = 39 (18.8 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 7/40 (17%), Positives = 25/40 (62%)
Query: 259 HQKKLEAELQQIEEKFEAKKRKFVESSE---QFQEELKKE 295
HQ +L+ + QQ +++ + + + ++ + Q Q++++++
Sbjct: 440 HQLQLQQQQQQQQQQMQQMQHQQLQQHQMHQQIQQQMQQQ 479
>UNIPROTKB|Q00059 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9606 "Homo sapiens" [GO:0031072 "heat shock protein
binding" evidence=IEA] [GO:0033108 "mitochondrial respiratory chain
complex assembly" evidence=IEA] [GO:0070363 "mitochondrial light
strand promoter sense binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0006391 "transcription initiation from mitochondrial promoter"
evidence=IDA;TAS] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IMP] [GO:0006390 "transcription from
mitochondrial promoter" evidence=IMP;TAS] [GO:0008301 "DNA binding,
bending" evidence=IDA] [GO:0006356 "regulation of transcription
from RNA polymerase I promoter" evidence=TAS] [GO:0006261
"DNA-dependent DNA replication" evidence=TAS] [GO:0005759
"mitochondrial matrix" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0042645 "mitochondrial nucleoid" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] Reactome:REACT_71 InterPro:IPR009071
Pfam:PF00505 GO:GO:0045893 GO:GO:0003700 GO:GO:0003682
GO:GO:0006261 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645 Reactome:REACT_1788
GO:GO:0006356 GO:GO:0033108 Pfam:PF09011 GO:GO:0006391 CTD:7019
eggNOG:NOG297801 HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830
GO:GO:0070363 EMBL:M62810 EMBL:EU279428 EMBL:BT019658 EMBL:BT019659
EMBL:AK312558 EMBL:AB451241 EMBL:AB451366 EMBL:AC023170
EMBL:BC126366 EMBL:X64269 IPI:IPI00020928 PIR:JC1496
RefSeq:NP_003192.1 UniGene:Hs.594250 PDB:3FGH PDB:3TMM PDB:3TQ6
PDBsum:3FGH PDBsum:3TMM PDBsum:3TQ6 ProteinModelPortal:Q00059
SMR:Q00059 IntAct:Q00059 STRING:Q00059 PhosphoSite:Q00059
DMDM:417324 PaxDb:Q00059 PRIDE:Q00059 DNASU:7019
Ensembl:ENST00000487519 GeneID:7019 KEGG:hsa:7019 UCSC:uc001jkf.3
GeneCards:GC10P060146 HGNC:HGNC:11741 HPA:HPA040648 MIM:600438
neXtProt:NX_Q00059 PharmGKB:PA36458 InParanoid:Q00059 OMA:YENEMKS
OrthoDB:EOG4KKZ4D PhylomeDB:Q00059 ChiTaRS:TFAM
EvolutionaryTrace:Q00059 GenomeRNAi:7019 NextBio:27419
ArrayExpress:Q00059 Bgee:Q00059 CleanEx:HS_TFAM
Genevestigator:Q00059 GermOnline:ENSG00000108064 Uniprot:Q00059
Length = 246
Score = 117 (46.2 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 88 PEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQE 144
P+KP+ Y+R+S++ KAQN D K E+ + I Q WR+LP+ +K Y + Y E
Sbjct: 50 PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAE 106
>UNIPROTKB|H0YKM5 [details] [associations]
symbol:HMG20A "High mobility group protein 20A"
species:9606 "Homo sapiens" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] EMBL:AC090984 Ensembl:ENST00000560867 HGNC:HGNC:5001
ChiTaRS:HMG20A Bgee:H0YKM5 GO:GO:0005634 Gene3D:1.10.30.10
InterPro:IPR009071 Pfam:PF00505 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Uniprot:H0YKM5
Length = 162
Score = 109 (43.4 bits), Expect = 0.00012, P = 0.00012
Identities = 28/90 (31%), Positives = 50/90 (55%)
Query: 56 HQHCQRVSRRGNVSQKMLTAKTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKL 115
H+ QR S+RG S K K R APK PL Y+R+ + +Q++A+ ++
Sbjct: 76 HEDEQR-SKRGGWS-KGRKRKKPLRDSNAPK---SPLTGYVRFMNERREQLRAKRPEVPF 130
Query: 116 WEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 145
EI +++G W LP ++K Y+++ +++K
Sbjct: 131 PEITRMLGNEWSKLPPEEKQRYLDEADRDK 160
>UNIPROTKB|F1M4J9 [details] [associations]
symbol:F1M4J9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00562835
Ensembl:ENSRNOT00000051890 Uniprot:F1M4J9
Length = 196
Score = 113 (44.8 bits), Expect = 0.00013, P = 0.00013
Identities = 36/142 (25%), Positives = 62/142 (43%)
Query: 66 GNVSQKMLTAKTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQM 125
G + K + P AP+PP L RY K K ++ DL + ++ K +G M
Sbjct: 64 GKADKAHYETKKKFKDPSAPEPPSAFLF-CSRYHSKT----KGEHPDLSIGDVAKKLGLM 118
Query: 126 WRDLPEDQKTEYVEDYEQEKNLKASTKLASISRPTWRAKAKASKPKQLRKSREARPKDSG 185
W + ED K ++K K K +RAK + +++ K++ ++ K
Sbjct: 119 WNNTAEDDKQPI-----KKKAFKLKEKFEKDI--AYRAKENNAGKREVVKAKRSKKKKVE 171
Query: 186 EKMQIGRIDIQPAEDEDEQEDG 207
E + D + ED++ +EDG
Sbjct: 172 EDDEEDEEDEEKEEDDENKEDG 193
>SGD|S000001515 [details] [associations]
symbol:IXR1 "Protein that binds DNA intrastrand cross-links
formed by cisplatin" species:4932 "Saccharomyces cerevisiae"
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0071456 "cellular response to hypoxia" evidence=IGI;IMP]
[GO:0006281 "DNA repair" evidence=IGI] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0003684 "damaged DNA binding" evidence=IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR009071 SGD:S000001515 Pfam:PF00505
GO:GO:0005634 GO:GO:0003684 GO:GO:0043565 GO:GO:0006281
GO:GO:0071456 GO:GO:0006351 EMBL:BK006944 GO:GO:0000122
eggNOG:COG5648 GeneTree:ENSGT00680000100562 OrthoDB:EOG483HF0
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:X71622 EMBL:L16900 EMBL:Z28032 PIR:S37849 RefSeq:NP_012893.3
RefSeq:NP_012897.3 ProteinModelPortal:P33417 SMR:P33417
IntAct:P33417 STRING:P33417 PaxDb:P33417 PeptideAtlas:P33417
EnsemblFungi:YKL032C GeneID:853836 GeneID:853840 KEGG:sce:YKL028W
KEGG:sce:YKL032C CYGD:YKL032c KO:K03136 NextBio:975043
Genevestigator:P33417 GermOnline:YKL032C Uniprot:P33417
Length = 597
Score = 122 (48.0 bits), Expect = 0.00013, P = 0.00013
Identities = 25/62 (40%), Positives = 40/62 (64%)
Query: 87 PPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKN 146
PP++P P++++++++ V +N D L EI KIIG+ WR+L +K EY E Y+ K
Sbjct: 433 PPKRPSGPFIQFTQEIRPTVVKENPDKGLIEITKIIGERWRELDPAKKAEYTETYK--KR 490
Query: 147 LK 148
LK
Sbjct: 491 LK 492
>POMBASE|SPAC57A10.09c [details] [associations]
symbol:nhp6 "High-mobility group non-histone chromatin
protein (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006359
"regulation of transcription from RNA polymerase III promoter"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] InterPro:IPR009071
PomBase:SPAC57A10.09c Pfam:PF00505 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0033554 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0006351 GO:GO:0006338 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0000790 GO:GO:0006334 GO:GO:0006359 HOGENOM:HOG000197861
OMA:LANPNNK OrthoDB:EOG4S7P0P PIR:T38936 RefSeq:NP_593314.1
ProteinModelPortal:P87057 STRING:P87057
EnsemblFungi:SPAC57A10.09c.1 GeneID:2542878 KEGG:spo:SPAC57A10.09c
NextBio:20803918 Uniprot:P87057
Length = 108
Score = 98 (39.6 bits), Expect = 0.00014, P = 0.00014
Identities = 25/93 (26%), Positives = 49/93 (52%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVED-- 140
K P P++ + +M +S + +++K N D ++G ++G+ W++L ++ Y E
Sbjct: 11 KDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYEEKAR 70
Query: 141 -----YEQEKNLKASTKLASISRPTWRAKAKAS 168
YE+E+ + TKLA+ T +A A A+
Sbjct: 71 QDKERYERERK-EYDTKLAN-GEKTGKASAPAA 101
>UNIPROTKB|P10103 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9913
"Bos taurus" [GO:0050918 "positive chemotaxis" evidence=IDA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0033151 "V(D)J
recombination" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=NAS] [GO:0042393 "histone binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0008301
"DNA binding, bending" evidence=IDA] [GO:0001773 "myeloid dendritic
cell activation" evidence=IDA] [GO:0042056 "chemoattractant
activity" evidence=IDA] [GO:0002407 "dendritic cell chemotaxis"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043280 "positive regulation of cysteine-type endopeptidase
activity involved in apoptotic process" evidence=IEA] [GO:0043065
"positive regulation of apoptotic process" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0009986 "cell surface" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053 GO:GO:0009986
GO:GO:0005730 GO:GO:0002437 GO:GO:0003684 GO:GO:0045944
GO:GO:0003700 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0043065 GO:GO:0003690 GO:GO:0003697 GO:GO:0043280
GO:GO:0042393 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
GO:GO:0002407 GO:GO:0001773 Pfam:PF09011 GO:GO:0033151
GO:GO:0006265 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 EMBL:X12796 EMBL:BT030587 EMBL:BC102929
EMBL:M26110 IPI:IPI00710114 PIR:S01947 RefSeq:NP_788785.1
UniGene:Bt.49650 ProteinModelPortal:P10103 SMR:P10103 STRING:P10103
PRIDE:P10103 Ensembl:ENSBTAT00000024094 GeneID:282691
KEGG:bta:282691 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 InParanoid:P10103 NextBio:20806359 GO:GO:0006288
Uniprot:P10103
Length = 215
Score = 114 (45.2 bits), Expect = 0.00014, P = 0.00014
Identities = 30/128 (23%), Positives = 60/128 (46%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYE 142
K P P++P + + + ++K ++ L + ++ K +G+MW + D K Y
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPY----- 144
Query: 143 QEKNLKASTKLASISRPTWRAKAKASKPKQ----LRKSREARPKDSGEKMQIGRIDIQPA 198
++K K K +RAK K K+ KS++ + ++ E+ + + +
Sbjct: 145 EKKAAKLKEKYEK-DIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDE 203
Query: 199 EDEDEQED 206
EDE+E+ED
Sbjct: 204 EDEEEEED 211
>UNIPROTKB|F2Z594 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9823
"Sus scrofa" [GO:2000426 "negative regulation of apoptotic cell
clearance" evidence=IEA] [GO:0070491 "repressing transcription
factor binding" evidence=IEA] [GO:0051384 "response to
glucocorticoid stimulus" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045639 "positive regulation
of myeloid cell differentiation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0043280
"positive regulation of cysteine-type endopeptidase activity
involved in apoptotic process" evidence=IEA] [GO:0043065 "positive
regulation of apoptotic process" evidence=IEA] [GO:0043005 "neuron
projection" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0030324 "lung development" evidence=IEA]
[GO:0030295 "protein kinase activator activity" evidence=IEA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0010858 "calcium-dependent protein kinase regulator activity"
evidence=IEA] [GO:0009986 "cell surface" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005125 "cytokine activity" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0002437 "inflammatory response to
antigenic stimulus" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005737
GO:GO:0017053 GO:GO:0005615 GO:GO:0009986 GO:GO:0005730
GO:GO:0002437 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
GO:GO:0051384 GO:GO:0043005 GO:GO:0003700 GO:GO:0045860
GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280 GO:GO:0045819
GO:GO:0000793 GO:GO:0001654 GO:GO:0043388 Pfam:PF09011
GO:GO:0033151 GO:GO:0045639 OMA:GEDAMRK GO:GO:0017055
GeneTree:ENSGT00560000076717 GO:GO:0006288 GO:GO:0010858
GO:GO:2000426 EMBL:CU062617 ProteinModelPortal:F2Z594 SMR:F2Z594
PRIDE:F2Z594 Ensembl:ENSSSCT00000010221 Uniprot:F2Z594
Length = 215
Score = 114 (45.2 bits), Expect = 0.00014, P = 0.00014
Identities = 30/128 (23%), Positives = 60/128 (46%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYE 142
K P P++P + + + ++K ++ L + ++ K +G+MW + D K Y
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPY----- 144
Query: 143 QEKNLKASTKLASISRPTWRAKAKASKPKQ----LRKSREARPKDSGEKMQIGRIDIQPA 198
++K K K +RAK K K+ KS++ + ++ E+ + + +
Sbjct: 145 EKKAAKLKEKYEK-DIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDE 203
Query: 199 EDEDEQED 206
EDE+E+ED
Sbjct: 204 EDEEEEED 211
>RGD|1591683 [details] [associations]
symbol:LOC681718 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1591683
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076717 IPI:IPI00767302
Ensembl:ENSRNOT00000045504 OMA:NNTASED ArrayExpress:F1MA29
Uniprot:F1MA29
Length = 215
Score = 114 (45.2 bits), Expect = 0.00014, P = 0.00014
Identities = 30/128 (23%), Positives = 60/128 (46%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYE 142
K P P++P + + + ++K ++ L + ++ K +G+MW + D K Y
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPY----- 144
Query: 143 QEKNLKASTKLASISRPTWRAKAKASKPKQ----LRKSREARPKDSGEKMQIGRIDIQPA 198
++K K K +RAK K K+ KS++ + ++ E+ + + +
Sbjct: 145 EKKAAKLKEKYEK-DIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEEE 203
Query: 199 EDEDEQED 206
EDEDE+E+
Sbjct: 204 EDEDEEEE 211
>UNIPROTKB|B6ZLK1 [details] [associations]
symbol:SSRP1 "Structure-specific recognition protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887
Pfam:PF00505 Pfam:PF03531 GO:GO:0005634 GO:GO:0005737
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
InterPro:IPR024954 OMA:PVEVKKG IPI:IPI00582237 UniGene:Gga.2985
HOVERGEN:HBG002932 EMBL:AADN02050757 EMBL:AADN02050758
EMBL:AB465209 STRING:B6ZLK1 Ensembl:ENSGALT00000012159
Ensembl:ENSGALT00000038738 Uniprot:B6ZLK1
Length = 706
Score = 119 (46.9 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 30/119 (25%), Positives = 64/119 (53%)
Query: 70 QKMLTAKTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDL 129
+K + +K G+ P APK +P+ YM + +++K+ + + + ++ K G++W+ +
Sbjct: 531 KKQVESKK-GKDPNAPK---RPMSAYMLWLNANREKIKSDHPGISITDLSKKAGELWKAM 586
Query: 130 PEDQKTEYVEDYEQEK-NLKASTKLASISRPTWRAKAKASKPKQLRKSREARPKDSGEK 187
+++K E+ E K + + + K S+ + +K + SK K +K +E + K GEK
Sbjct: 587 SKEKKEEWDRKAEDAKRDYEKAMKEYSVGNKSESSKMERSKKK--KKKQEKQMKGKGEK 643
Score = 45 (20.9 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 264 EAELQQIEEKFEAKKRKFVESSEQFQEELKKEKASCSENE 303
++ + + E F++K+ FV S E E KKE SE+E
Sbjct: 655 KSSAKTMSESFKSKE--FVSSDESSSAESKKED---SEDE 689
>UNIPROTKB|Q04678 [details] [associations]
symbol:SSRP1 "FACT complex subunit SSRP1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005694 GO:GO:0005730 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165
KO:K09272 InterPro:IPR024954 HOGENOM:HOG000180790 EMBL:AJ719641
EMBL:L08815 EMBL:D14315 IPI:IPI00582237 PIR:S78050
RefSeq:NP_001005796.1 UniGene:Gga.2985 ProteinModelPortal:Q04678
STRING:Q04678 PRIDE:Q04678 GeneID:396509 KEGG:gga:396509 CTD:6749
HOVERGEN:HBG002932 InParanoid:Q04678 OrthoDB:EOG41VK2K
NextBio:20816548 Uniprot:Q04678
Length = 706
Score = 119 (46.9 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 30/119 (25%), Positives = 64/119 (53%)
Query: 70 QKMLTAKTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDL 129
+K + +K G+ P APK +P+ YM + +++K+ + + + ++ K G++W+ +
Sbjct: 531 KKQVESKK-GKDPNAPK---RPMSAYMLWLNANREKIKSDHPGISITDLSKKAGELWKAM 586
Query: 130 PEDQKTEYVEDYEQEK-NLKASTKLASISRPTWRAKAKASKPKQLRKSREARPKDSGEK 187
+++K E+ E K + + + K S+ + +K + SK K +K +E + K GEK
Sbjct: 587 SKEKKEEWDRKAEDAKRDYEKAMKEYSVGNKSESSKMERSKKK--KKKQEKQMKGKGEK 643
Score = 45 (20.9 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 264 EAELQQIEEKFEAKKRKFVESSEQFQEELKKEKASCSENE 303
++ + + E F++K+ FV S E E KKE SE+E
Sbjct: 655 KSSAKTMSESFKSKE--FVSSDESSSAESKKED---SEDE 689
>ZFIN|ZDB-GENE-031118-9 [details] [associations]
symbol:ssrp1a "structure specific recognition protein
1a" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
Pfam:PF03531 ZFIN:ZDB-GENE-031118-9 GO:GO:0005634 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 InterPro:IPR024954 EMBL:BX510356
IPI:IPI00487997 Ensembl:ENSDART00000137795 ArrayExpress:F1QEB4
Bgee:F1QEB4 Uniprot:F1QEB4
Length = 705
Score = 122 (48.0 bits), Expect = 0.00016, P = 0.00016
Identities = 29/101 (28%), Positives = 55/101 (54%)
Query: 88 PEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNL 147
P++P+ YM + +++K++N + + EI K G+MW+ L +D+K E+ + E+ K
Sbjct: 546 PKRPMSAYMLWLNGNRERIKSENPGISITEISKKAGEMWKQLGKDKKEEWDKKAEEAK-- 603
Query: 148 KASTKLASISRPTWRAKAKASKPKQLRKSR-EARPKDSGEK 187
+ K + + A A+K K+ + + EA+ K GEK
Sbjct: 604 RQYEKAMKEYKESGGGAAAATKEKKKKGGKVEAKKKSGGEK 644
>UNIPROTKB|Q5D144 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9823 "Sus scrofa" [GO:0008301 "DNA binding, bending"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISS]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0042645 "mitochondrial nucleoid" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0006391
"transcription initiation from mitochondrial promoter"
evidence=ISS] [GO:0070363 "mitochondrial light strand promoter
sense binding" evidence=ISS] [GO:0033108 "mitochondrial respiratory
chain complex assembly" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0045893 GO:GO:0003700 GO:GO:0003682
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0042645 GO:GO:0033108 Pfam:PF09011
HSSP:P63159 GO:GO:0006391 CTD:7019 eggNOG:NOG297801
HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830 GO:GO:0070363
OrthoDB:EOG4KKZ4D EMBL:AY923074 RefSeq:NP_001123683.1
UniGene:Ssc.48086 UniGene:Ssc.78474 ProteinModelPortal:Q5D144
STRING:Q5D144 GeneID:397279 KEGG:ssc:397279 Uniprot:Q5D144
Length = 246
Score = 115 (45.5 bits), Expect = 0.00016, P = 0.00016
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 88 PEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQE 144
P+KP+ Y+R+S++ KAQN D K E+ K I ++WR+LP+ +K Y + Y +
Sbjct: 50 PKKPMTSYVRFSKEQLPIFKAQNPDAKNSELIKKIAELWRELPDSEKKIYEDAYRAD 106
>UNIPROTKB|O15405 [details] [associations]
symbol:TOX3 "TOX high mobility group box family member 3"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0051219
"phosphoprotein binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] [GO:0034056 "estrogen
response element binding" evidence=IDA] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=IDA] InterPro:IPR009071 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005634 GO:GO:0006915 GO:GO:0045893
GO:GO:0042803 GO:GO:0043524 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0034056 HOGENOM:HOG000230949 HOVERGEN:HBG051183 EMBL:AK299202
EMBL:AC007490 EMBL:U80736 IPI:IPI00903025 IPI:IPI00929129
RefSeq:NP_001073899.2 RefSeq:NP_001139660.1 UniGene:Hs.460789
HSSP:Q66JW3 ProteinModelPortal:O15405 SMR:O15405 STRING:O15405
PhosphoSite:O15405 PaxDb:O15405 PRIDE:O15405 DNASU:27324
Ensembl:ENST00000219746 Ensembl:ENST00000407228 GeneID:27324
KEGG:hsa:27324 UCSC:uc002egw.2 CTD:27324 GeneCards:GC16M052471
H-InvDB:HIX0013031 HGNC:HGNC:11972 HPA:HPA040376 MIM:611416
neXtProt:NX_O15405 PharmGKB:PA162406752 eggNOG:NOG284736
OMA:HSLIMRS ChiTaRS:TOX3 GenomeRNAi:27324 NextBio:50340
ArrayExpress:O15405 Bgee:O15405 CleanEx:HS_TOX3
Genevestigator:O15405 Uniprot:O15405
Length = 576
Score = 110 (43.8 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 28/85 (32%), Positives = 39/85 (45%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYE 142
K P P+KP+ Y + R +K QN + E+ KI+ MW L E+QK Y E
Sbjct: 250 KDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTE 309
Query: 143 QEKNLKASTKLASISRPTWRAKAKA 167
K K K + R + +KA A
Sbjct: 310 AAK--KEYLKALAAYRASLVSKAAA 332
Score = 52 (23.4 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 10/53 (18%), Positives = 29/53 (54%)
Query: 245 RMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQ-FQEELKKEK 296
+ Q+ + Q Q L HQ + + Q ++ F+ ++ ++ +Q Q+++ +++
Sbjct: 453 QQQMQQMQQQQLQQHQMHQQIQQQMQQQHFQHHMQQHLQQQQQHLQQQINQQQ 505
>UNIPROTKB|E1BMK2 [details] [associations]
symbol:E1BMK2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0005737
GO:GO:0005615 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
GO:GO:0051384 GO:GO:0043005 GO:GO:0045860 GO:GO:0030295
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0045819 GO:GO:0001654 Pfam:PF09011 GO:GO:0045639
GeneTree:ENSGT00560000076717 GO:GO:0010858 GO:GO:2000426
EMBL:DAAA02042275 IPI:IPI00688378 Ensembl:ENSBTAT00000019791
OMA:EXDIAAY Uniprot:E1BMK2
Length = 215
Score = 113 (44.8 bits), Expect = 0.00018, P = 0.00018
Identities = 30/128 (23%), Positives = 60/128 (46%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYE 142
K P P++P + + + ++K ++ L + ++ K +G+MW + D K Y
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAVDDKQPY----- 144
Query: 143 QEKNLKASTKLASISRPTWRAKAKASKPKQ----LRKSREARPKDSGEKMQIGRIDIQPA 198
++K K K +RAK K K+ KS++ + ++ E+ + + +
Sbjct: 145 EKKAAKLKEKYEK-DIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDE 203
Query: 199 EDEDEQED 206
EDE+E+ED
Sbjct: 204 EDEEEEED 211
>UNIPROTKB|P12682 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9823
"Sus scrofa" [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IDA] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0006288
"base-excision repair, DNA ligation" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793
Pfam:PF09011 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 KO:K10802
GO:GO:0017055 CTD:3146 HOVERGEN:HBG009000 GO:GO:0006288 EMBL:M21683
PIR:A28897 RefSeq:NP_001004034.1 UniGene:Ssc.22696
ProteinModelPortal:P12682 SMR:P12682 STRING:P12682 PRIDE:P12682
GeneID:445521 KEGG:ssc:445521 Uniprot:P12682
Length = 215
Score = 113 (44.8 bits), Expect = 0.00018, P = 0.00018
Identities = 30/128 (23%), Positives = 60/128 (46%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYE 142
K P P++P + + + ++K ++ L + ++ K +G+MW + D K Y
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKHPY----- 144
Query: 143 QEKNLKASTKLASISRPTWRAKAKASKPKQ----LRKSREARPKDSGEKMQIGRIDIQPA 198
++K K K +RAK K K+ KS++ + ++ E+ + + +
Sbjct: 145 EKKAAKLKEKYEK-DIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDE 203
Query: 199 EDEDEQED 206
EDE+E+ED
Sbjct: 204 EDEEEEED 211
>UNIPROTKB|E1BA21 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9913 "Bos taurus" [GO:0070363 "mitochondrial light strand
promoter sense binding" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0042645 "mitochondrial nucleoid" evidence=IEA] [GO:0033108
"mitochondrial respiratory chain complex assembly" evidence=IEA]
[GO:0006391 "transcription initiation from mitochondrial promoter"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0042645 GO:GO:0033108 Pfam:PF09011 GO:GO:0006391
IPI:IPI00707168 UniGene:Bt.102328 GO:GO:0070363 OMA:YENEMKS
GeneTree:ENSGT00440000039001 EMBL:DAAA02062260 EMBL:DAAA02062261
Ensembl:ENSBTAT00000052511 Uniprot:E1BA21
Length = 246
Score = 114 (45.2 bits), Expect = 0.00021, P = 0.00021
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 88 PEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQE 144
P+KP+ Y+R+S++ KAQN D K E+ K I ++WR+LP+ +K Y + Y +
Sbjct: 50 PKKPMTSYVRFSKEQLPIFKAQNPDAKNSELIKKIAKLWRELPDSEKKIYEDAYRAD 106
>UNIPROTKB|Q0II87 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9913 "Bos taurus" [GO:0008301 "DNA binding, bending"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISS]
[GO:0042645 "mitochondrial nucleoid" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0006391 "transcription
initiation from mitochondrial promoter" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0070363 "mitochondrial light strand promoter sense binding"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893
GO:GO:0003700 GO:GO:0003682 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645
Pfam:PF09011 GO:GO:0006391 EMBL:BC122754 IPI:IPI00707168
RefSeq:NP_001029188.2 UniGene:Bt.102328 ProteinModelPortal:Q0II87
STRING:Q0II87 PRIDE:Q0II87 GeneID:510059 KEGG:bta:510059 CTD:7019
eggNOG:NOG297801 HOGENOM:HOG000139423 HOVERGEN:HBG106674
InParanoid:Q0II87 KO:K11830 NextBio:20869256 GO:GO:0070363
Uniprot:Q0II87
Length = 246
Score = 114 (45.2 bits), Expect = 0.00021, P = 0.00021
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 88 PEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQE 144
P+KP+ Y+R+S++ KAQN D K E+ K I ++WR+LP+ +K Y + Y +
Sbjct: 50 PKKPMTSYVRFSKEQLPIFKAQNPDAKNSELIKKIAKLWRELPDSEKKIYEDAYRAD 106
>UNIPROTKB|E1BQV6 [details] [associations]
symbol:TOX3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003682 "chromatin binding" evidence=IEA] [GO:0034056
"estrogen response element binding" evidence=IEA] [GO:0042803
"protein homodimerization activity" evidence=IEA] [GO:0043524
"negative regulation of neuron apoptotic process" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0051219 "phosphoprotein binding" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893 GO:GO:0043524
GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0034056 GeneTree:ENSGT00560000076898
OMA:HSLIMRS EMBL:AADN02038322 EMBL:AADN02038323 EMBL:AADN02038324
EMBL:AADN02038325 EMBL:AADN02038326 EMBL:AADN02038327
EMBL:AADN02038328 EMBL:AADN02038329 IPI:IPI00576205
Ensembl:ENSGALT00000005929 ArrayExpress:E1BQV6 Uniprot:E1BQV6
Length = 580
Score = 110 (43.8 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 28/85 (32%), Positives = 39/85 (45%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYE 142
K P P+KP+ Y + R +K QN + E+ KI+ MW L E+QK Y E
Sbjct: 255 KDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTE 314
Query: 143 QEKNLKASTKLASISRPTWRAKAKA 167
K K K + R + +KA A
Sbjct: 315 AAK--KEYLKALAAYRASLVSKAAA 337
Score = 51 (23.0 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 10/53 (18%), Positives = 29/53 (54%)
Query: 245 RMQVLKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQ-FQEELKKEK 296
+ Q+ + Q Q L HQ + + Q ++ F+ ++ ++ +Q Q+++ +++
Sbjct: 453 QQQMQQMQQQQLHQHQMHQQIQQQMQQQHFQHHMQQHLQQQQQHLQQQINQQQ 505
>TAIR|locus:505006135 [details] [associations]
symbol:HMGB2 "high mobility group B2" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
[GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
"chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
"structural constituent of chromatin" evidence=TAS] [GO:0006096
"glycolysis" evidence=RCA] [GO:0006833 "water transport"
evidence=RCA] [GO:0006972 "hyperosmotic response" evidence=RCA]
[GO:0007030 "Golgi organization" evidence=RCA] [GO:0009266
"response to temperature stimulus" evidence=RCA] [GO:0009651
"response to salt stress" evidence=RCA] [GO:0046686 "response to
cadmium ion" evidence=RCA] [GO:0003677 "DNA binding"
evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0003677
GO:GO:0000785 EMBL:AC069251 GO:GO:0003700 GO:GO:0003682
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0006333 HSSP:P07155 EMBL:Y14072 EMBL:AF370248
EMBL:AY063064 EMBL:AK118543 EMBL:AB493468 EMBL:AY084731
IPI:IPI00532636 IPI:IPI00657279 IPI:IPI00846437 PIR:F86339
PIR:T51597 RefSeq:NP_001031074.1 RefSeq:NP_001077569.1
RefSeq:NP_564123.1 UniGene:At.21298 ProteinModelPortal:O49596
SMR:O49596 STRING:O49596 PaxDb:O49596 PRIDE:O49596
EnsemblPlants:AT1G20693.1 GeneID:838658 KEGG:ath:AT1G20693
TAIR:At1g20693 HOGENOM:HOG000197860 InParanoid:O49596 OMA:YVAKANK
PhylomeDB:O49596 ProtClustDB:CLSN2687884 Genevestigator:O49596
GO:GO:0030527 Uniprot:O49596
Length = 144
Score = 102 (41.0 bits), Expect = 0.00025, P = 0.00025
Identities = 31/99 (31%), Positives = 44/99 (44%)
Query: 63 SRRGNVSQKMLTAKTDGRGPKAPKPPEKPLMP---YMRYSRKVWDQVKAQNLDLK-LWEI 118
+R +S AK GRG A K P KP P + + + K +N K + +
Sbjct: 10 TRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATV 69
Query: 119 GKIIGQMWRDLPEDQKTEYVEDYEQ-----EKNLKASTK 152
GK G W+ L + +K YV E+ EKN+KA K
Sbjct: 70 GKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNK 108
>UNIPROTKB|E2RKW6 [details] [associations]
symbol:HMG20A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
CTD:10363 OMA:DKERYMR GeneTree:ENSGT00700000104521
EMBL:AAEX03016351 RefSeq:XP_853367.1 ProteinModelPortal:E2RKW6
Ensembl:ENSCAFT00000028701 GeneID:487661 KEGG:cfa:487661
NextBio:20861223 Uniprot:E2RKW6
Length = 347
Score = 116 (45.9 bits), Expect = 0.00027, P = 0.00027
Identities = 51/214 (23%), Positives = 90/214 (42%)
Query: 56 HQHCQRVSRRGNVSQKMLTAKTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKL 115
H+ QR S+RG S K K R APK PL Y+R+ + +Q++A+ ++
Sbjct: 76 HEDEQR-SKRGGWS-KGRKRKKPLRDSNAPK---SPLTGYVRFMNERREQLRAKRPEVPF 130
Query: 116 WEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASISRPTWRAKAKASKPKQLRK 175
EI +++G W LP ++K Y+++ +++K + +L K +A K RK
Sbjct: 131 PEITRMLGNEWSKLPPEEKQRYLDEADRDKE-RYMKELEQYQ------KTEAYKVFS-RK 182
Query: 176 SREARPKDSGEKMQIGRIDIQPAEDEDEQEDGYSVKHVAYARYLRNHRLINEIFXXXXXX 235
+++ R K + R E E E ++ + NH E
Sbjct: 183 TQD-RQKGKSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFLNHSKARE--AELRQL 239
Query: 236 XXXXXXTTNRMQVLKRQVQSLTMHQKKLEAELQQ 269
R L++ V+S+ +KLE ++ Q
Sbjct: 240 RKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQ 273
>UNIPROTKB|Q9NP66 [details] [associations]
symbol:HMG20A "High mobility group protein 20A"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003677 "DNA binding"
evidence=NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006325 "chromatin organization" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CH471136 GO:GO:0006325
CTD:10363 HOGENOM:HOG000247029 HOVERGEN:HBG059870 EMBL:AF146222
EMBL:AL355736 EMBL:AL355737 EMBL:AK001601 EMBL:BT006716
EMBL:AK223100 EMBL:AC090984 EMBL:BC021959 IPI:IPI00018924
IPI:IPI00759508 RefSeq:NP_060670.1 UniGene:Hs.69594
ProteinModelPortal:Q9NP66 SMR:Q9NP66 IntAct:Q9NP66
MINT:MINT-1198360 STRING:Q9NP66 PhosphoSite:Q9NP66 DMDM:74734297
PaxDb:Q9NP66 PeptideAtlas:Q9NP66 PRIDE:Q9NP66 DNASU:10363
Ensembl:ENST00000336216 Ensembl:ENST00000381714 GeneID:10363
KEGG:hsa:10363 UCSC:uc002bcq.1 UCSC:uc002bcr.3
GeneCards:GC15P077712 HGNC:HGNC:5001 HPA:HPA008126 MIM:605534
neXtProt:NX_Q9NP66 PharmGKB:PA29331 InParanoid:Q9NP66 OMA:DKERYMR
OrthoDB:EOG4H4643 PhylomeDB:Q9NP66 ChiTaRS:HMG20A GenomeRNAi:10363
NextBio:39285 ArrayExpress:Q9NP66 Bgee:Q9NP66 CleanEx:HS_HMG20A
Genevestigator:Q9NP66 GermOnline:ENSG00000140382 Uniprot:Q9NP66
Length = 347
Score = 116 (45.9 bits), Expect = 0.00027, P = 0.00027
Identities = 51/214 (23%), Positives = 90/214 (42%)
Query: 56 HQHCQRVSRRGNVSQKMLTAKTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKL 115
H+ QR S+RG S K K R APK PL Y+R+ + +Q++A+ ++
Sbjct: 76 HEDEQR-SKRGGWS-KGRKRKKPLRDSNAPK---SPLTGYVRFMNERREQLRAKRPEVPF 130
Query: 116 WEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASISRPTWRAKAKASKPKQLRK 175
EI +++G W LP ++K Y+++ +++K + +L K +A K RK
Sbjct: 131 PEITRMLGNEWSKLPPEEKQRYLDEADRDKE-RYMKELEQYQ------KTEAYKVFS-RK 182
Query: 176 SREARPKDSGEKMQIGRIDIQPAEDEDEQEDGYSVKHVAYARYLRNHRLINEIFXXXXXX 235
+++ R K + R E E E ++ + NH E
Sbjct: 183 TQD-RQKGKSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFLNHSKARE--AELRQL 239
Query: 236 XXXXXXTTNRMQVLKRQVQSLTMHQKKLEAELQQ 269
R L++ V+S+ +KLE ++ Q
Sbjct: 240 RKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQ 273
>UNIPROTKB|O94900 [details] [associations]
symbol:TOX "Thymocyte selection-associated high mobility
group box protein TOX" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 HOGENOM:HOG000230949 HOVERGEN:HBG051183
eggNOG:NOG284736 EMBL:AB018351 EMBL:BC016665 IPI:IPI00006065
RefSeq:NP_055544.1 UniGene:Hs.491805 UniGene:Hs.634856
ProteinModelPortal:O94900 SMR:O94900 STRING:O94900
PhosphoSite:O94900 PaxDb:O94900 PRIDE:O94900 DNASU:9760
Ensembl:ENST00000361421 GeneID:9760 KEGG:hsa:9760 UCSC:uc003xtw.1
CTD:9760 GeneCards:GC08M059717 HGNC:HGNC:18988 HPA:HPA018322
MIM:606863 neXtProt:NX_O94900 PharmGKB:PA162406704
InParanoid:O94900 OMA:CRNPPAQ OrthoDB:EOG44XJGQ GenomeRNAi:9760
NextBio:36737 ArrayExpress:O94900 Bgee:O94900 CleanEx:HS_TOX
Genevestigator:O94900 GermOnline:ENSG00000198846 Uniprot:O94900
Length = 526
Score = 118 (46.6 bits), Expect = 0.00031, P = 0.00031
Identities = 32/100 (32%), Positives = 49/100 (49%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYE 142
K P P+KP+ Y + R +K QN + E+ KI+ MW L E+QK Y + E
Sbjct: 256 KDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTE 315
Query: 143 QEKN--LK--ASTKLASISRP-TWRAKAKASKPKQLRKSR 177
K LK A+ + + +S+ + K S+P QL S+
Sbjct: 316 AAKKEYLKQLAAYRASLVSKSYSEPVDVKTSQPPQLINSK 355
>UNIPROTKB|Q0VCL5 [details] [associations]
symbol:HMG20A "High-mobility group 20A" species:9913 "Bos
taurus" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 CTD:10363 HOGENOM:HOG000247029 HOVERGEN:HBG059870
OMA:DKERYMR OrthoDB:EOG4H4643 GeneTree:ENSGT00700000104521
EMBL:DAAA02052476 EMBL:DAAA02052477 EMBL:BC120108 IPI:IPI00714562
RefSeq:NP_001069105.1 UniGene:Bt.103436 SMR:Q0VCL5
Ensembl:ENSBTAT00000027243 GeneID:513719 KEGG:bta:513719
InParanoid:Q0VCL5 NextBio:20871001 Uniprot:Q0VCL5
Length = 347
Score = 115 (45.5 bits), Expect = 0.00035, P = 0.00035
Identities = 51/214 (23%), Positives = 90/214 (42%)
Query: 56 HQHCQRVSRRGNVSQKMLTAKTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKL 115
H+ QR S+RG S K K R APK PL Y+R+ + +Q++A+ ++
Sbjct: 76 HEDEQR-SKRGGWS-KGRKRKKPLRDSNAPK---SPLTGYVRFMNERREQLRAKRPEVPF 130
Query: 116 WEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASISRPTWRAKAKASKPKQLRK 175
EI +++G W LP ++K Y+++ +++K + +L K +A K RK
Sbjct: 131 PEITRMLGNEWSKLPPEEKQRYLDEADRDKE-RYMKELEQYQ------KTEAYKVFS-RK 182
Query: 176 SREARPKDSGEKMQIGRIDIQPAEDEDEQEDGYSVKHVAYARYLRNHRLINEIFXXXXXX 235
+++ R K + R E E E ++ + NH E
Sbjct: 183 TQD-RQKGKSHRQDAARQATHDHEKEAEVKERSVFDIPIFTEEFLNHSKARE--AELRQL 239
Query: 236 XXXXXXTTNRMQVLKRQVQSLTMHQKKLEAELQQ 269
R L++ V+S+ +KLE ++ Q
Sbjct: 240 RKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQ 273
>UNIPROTKB|F1Q2J2 [details] [associations]
symbol:SSRP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 GO:GO:0005634
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
InterPro:IPR024954 OMA:PVEVKKG EMBL:AAEX03011448
Ensembl:ENSCAFT00000012707 Uniprot:F1Q2J2
Length = 710
Score = 113 (44.8 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 41/177 (23%), Positives = 80/177 (45%)
Query: 17 RNHRLINEIFXXXXXXXXXXXXTTNRMQVLKRQVQSLTMHQHCQRVSRRGNVSQKMLTAK 76
R L E ++R + ++Q++ M + R SR+ V K
Sbjct: 486 RGGDLAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAK--DRKSRKKPVEVKK---- 539
Query: 77 TDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTE 136
G+ P APK P M ++ SR +++KA + + + ++ K G++W+ + +++K E
Sbjct: 540 --GKDPNAPKRPMSAYMLWLNASR---EKIKADHPGISITDLSKKAGEIWKGMSKEKKEE 594
Query: 137 Y---VEDY--EQEKNLKASTKLASISRPTWRAKAKASKPKQLRKSREARP-KDSGEK 187
+ ED E EK +K S ++R K+K K +++ +++ P + S K
Sbjct: 595 WDRKAEDARREYEKAMKEYEGGRGESSKSYRDKSKKKKKVKVKMEKKSTPSRGSSSK 651
Score = 48 (22.0 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 249 LKRQVQSLTMHQKKLEAELQQIEEKFEAKKRKFVESSEQFQEELK-KEKASCSEN 302
+K + +S ++ +Q+ E F++K+ FV S E E K K+K SE+
Sbjct: 636 VKMEKKSTPSRGSSSKSSSRQLSESFKSKE--FVSSDESSSGENKSKKKRRRSED 688
>RGD|1585821 [details] [associations]
symbol:LOC680968 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001059688 Ncbi:XP_001059688
Length = 213
Score = 110 (43.8 bits), Expect = 0.00041, P = 0.00041
Identities = 29/125 (23%), Positives = 59/125 (47%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYE 142
K P P++P + + + ++K ++ L + ++ K +G+MW + D K Y
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPY----- 144
Query: 143 QEKNLKASTKLASISRPTWRAKAKASKPKQ-LRKSREARPKDSGEKMQIGRIDIQPAEDE 201
++K K K +RAK K K+ + K+ +++ K E + D + E+E
Sbjct: 145 EKKAAKLKEKYEK-DIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEEE 203
Query: 202 DEQED 206
+E+E+
Sbjct: 204 EEEEE 208
>RGD|1589528 [details] [associations]
symbol:LOC679344 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001054795 Ncbi:XP_001054795
Length = 215
Score = 110 (43.8 bits), Expect = 0.00042, P = 0.00042
Identities = 30/128 (23%), Positives = 59/128 (46%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYE 142
K P P++P + + + ++K ++ L + ++ K +G+MW + D K
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPC----- 144
Query: 143 QEKNLKASTKLASISRPTWRAKAKASKPKQ----LRKSREARPKDSGEKMQIGRIDIQPA 198
++K K K +RAK K K+ KS++ + ++ E+ + + +
Sbjct: 145 EKKAAKLKEKYEK-DIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEEE 203
Query: 199 EDEDEQED 206
EDEDE+ED
Sbjct: 204 EDEDEEED 211
>RGD|1592627 [details] [associations]
symbol:LOC685520 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_003749913 Ncbi:XP_003749961
Length = 215
Score = 110 (43.8 bits), Expect = 0.00042, P = 0.00042
Identities = 30/128 (23%), Positives = 59/128 (46%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYE 142
K P P++P + + + ++K ++ L + ++ K +G+MW + D K
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPC----- 144
Query: 143 QEKNLKASTKLASISRPTWRAKAKASKPKQ----LRKSREARPKDSGEKMQIGRIDIQPA 198
++K K K +RAK K K+ KS++ + ++ E+ + + +
Sbjct: 145 EKKAAKLKEKYEK-DIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEEE 203
Query: 199 EDEDEQED 206
EDEDE+ED
Sbjct: 204 EDEDEEED 211
>UNIPROTKB|E1BKT2 [details] [associations]
symbol:TOX3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051219 "phosphoprotein binding" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0034056 "estrogen response element
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893
GO:GO:0043524 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0034056
GeneTree:ENSGT00560000076898 CTD:27324 OMA:HSLIMRS
EMBL:DAAA02046427 EMBL:DAAA02046428 EMBL:DAAA02046429
EMBL:DAAA02046430 IPI:IPI00715207 RefSeq:XP_002694823.1
RefSeq:XP_885168.3 ProteinModelPortal:E1BKT2
Ensembl:ENSBTAT00000000539 GeneID:539135 KEGG:bta:539135
NextBio:20877802 Uniprot:E1BKT2
Length = 556
Score = 110 (43.8 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 28/85 (32%), Positives = 39/85 (45%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYE 142
K P P+KP+ Y + R +K QN + E+ KI+ MW L E+QK Y E
Sbjct: 250 KDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTE 309
Query: 143 QEKNLKASTKLASISRPTWRAKAKA 167
K K K + R + +KA A
Sbjct: 310 AAK--KEYLKALAAYRASLVSKAAA 332
Score = 48 (22.0 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 11/54 (20%), Positives = 33/54 (61%)
Query: 247 QVLKRQVQSLTMHQKKLEAELQQ--IEEKFEAKKRKFVE--SSEQFQEELKKEK 296
Q+ ++Q+Q + Q++L+ +LQQ + + ++++ + + +Q Q+ L+ ++
Sbjct: 445 QLQQQQLQQQQLQQQQLQQQLQQQHFQHHVQLQQQQLQQHINQQQLQQRLQLQQ 498
>UNIPROTKB|F1NLS2 [details] [associations]
symbol:TFAM "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003682 "chromatin binding" evidence=IEA] [GO:0006391
"transcription initiation from mitochondrial promoter"
evidence=IEA] [GO:0033108 "mitochondrial respiratory chain complex
assembly" evidence=IEA] [GO:0042645 "mitochondrial nucleoid"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0070363 "mitochondrial light
strand promoter sense binding" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0045893 GO:GO:0003682 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645
GO:GO:0033108 GO:GO:0006391 GO:GO:0070363 OMA:YENEMKS
GeneTree:ENSGT00440000039001 EMBL:AADN02035299 IPI:IPI00588565
Ensembl:ENSGALT00000041096 ArrayExpress:F1NLS2 Uniprot:F1NLS2
Length = 264
Score = 112 (44.5 bits), Expect = 0.00044, P = 0.00044
Identities = 33/107 (30%), Positives = 52/107 (48%)
Query: 80 RGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVE 139
R + + P++PL Y R+ R + QN +L E+ K + +WR+LP QK Y E
Sbjct: 39 RAMSSAERPKRPLSAYFRFLRDNQPAFRQQNPELNSLELVKKLAGVWRELPASQKQVYEE 98
Query: 140 ----DYEQEKNLKASTKLASISRPTWRAKAKASKPKQLRKSREARPK 182
D+ + + A+ K A ++ P A K + K+L K R R K
Sbjct: 99 ARKTDWRKYEEQLAAYK-AQLT-PAQAAALKEERRKRLAKRRSFRIK 143
>FB|FBgn0004362 [details] [associations]
symbol:HmgD "High mobility group protein D" species:7227
"Drosophila melanogaster" [GO:0000790 "nuclear chromatin"
evidence=IDA] [GO:0006325 "chromatin organization" evidence=IDA]
[GO:0003680 "AT DNA binding" evidence=IDA] [GO:0008301 "DNA
binding, bending" evidence=IDA;NAS] [GO:0007517 "muscle organ
development" evidence=IMP] [GO:0048813 "dendrite morphogenesis"
evidence=IMP] InterPro:IPR009071 Pfam:PF00505 EMBL:AE013599
GO:GO:0005634 GO:GO:0005694 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0048813
GO:GO:0007517 GO:GO:0006325 GO:GO:0003680 eggNOG:NOG320947
EMBL:M77023 EMBL:X71138 EMBL:AM294353 EMBL:AM294354 EMBL:AM294355
EMBL:AM294356 EMBL:AM294357 EMBL:AM294358 EMBL:AM294359
EMBL:AM294360 EMBL:AM294361 EMBL:AM294362 EMBL:AM294363
EMBL:AY118333 PIR:A44382 RefSeq:NP_001163244.1 RefSeq:NP_726109.1
RefSeq:NP_726110.1 UniGene:Dm.7318 PDB:1E7J PDB:1HMA PDB:1QRV
PDB:3NM9 PDBsum:1E7J PDBsum:1HMA PDBsum:1QRV PDBsum:3NM9
ProteinModelPortal:Q05783 SMR:Q05783 DIP:DIP-22805N IntAct:Q05783
MINT:MINT-843935 STRING:Q05783 PaxDb:Q05783 PRIDE:Q05783
EnsemblMetazoa:FBtr0071708 EnsemblMetazoa:FBtr0071709
EnsemblMetazoa:FBtr0301410 GeneID:37481 KEGG:dme:Dmel_CG17950
CTD:37481 FlyBase:FBgn0004362 GeneTree:ENSGT00700000104547
InParanoid:Q05783 OMA:WRAMSEQ OrthoDB:EOG4TX98R PhylomeDB:Q05783
ChiTaRS:HmgD EvolutionaryTrace:Q05783 GenomeRNAi:37481
NextBio:803865 Bgee:Q05783 GermOnline:CG17950 Uniprot:Q05783
Length = 112
Score = 93 (37.8 bits), Expect = 0.00048, P = 0.00048
Identities = 23/108 (21%), Positives = 54/108 (50%)
Query: 88 PEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYV-----EDYE 142
P++PL YM + + +K +N +K+ E+ K G++WR + + + E +DY+
Sbjct: 5 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSEWEAKAAKAKDDYD 64
Query: 143 QE-KNLKASTKLASISRPTWRAKAKASKPKQLRKSREARPKDSGEKMQ 189
+ K +A+ ++ + + +AK +K + +E +D ++ +
Sbjct: 65 RAVKEFEANGGSSAANGGGAKKRAKPAKKVAKKSKKEESDEDDDDESE 112
>UNIPROTKB|F1N927 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005125 "cytokine
activity" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0009986
"cell surface" evidence=IEA] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0017055
"negative regulation of RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0030295 "protein
kinase activator activity" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005737 GO:GO:0017053 GO:GO:0005615
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0003700
GO:GO:0045860 GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280
GO:GO:0045819 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0045639 OMA:GEDAMRK GO:GO:0017055
GeneTree:ENSGT00560000076717 GO:GO:0006288 GO:GO:0010858
GO:GO:2000426 EMBL:AADN02005232 IPI:IPI00818014
Ensembl:ENSGALT00000036454 ArrayExpress:F1N927 Uniprot:F1N927
Length = 214
Score = 109 (43.4 bits), Expect = 0.00055, P = 0.00055
Identities = 30/124 (24%), Positives = 55/124 (44%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYE 142
K P P++P + + + ++K ++ L + ++ K +G+MW + D K Y
Sbjct: 90 KDPNAPKRPPSAFFLFCSEFRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPY----- 144
Query: 143 QEKNLKASTKLASISRPTWRAKAKASKPKQLRKSREARPKDSGEKMQIGRIDIQPAEDED 202
++K K K +RAK K K++ E K E+ D + EDE+
Sbjct: 145 EKKAAKLKEKYEK-DIAAYRAKGKVDAGKKVVAKAEKSKKKKEEEEDEDE-DEEDEEDEE 202
Query: 203 EQED 206
E+E+
Sbjct: 203 EEEE 206
>UNIPROTKB|Q9YH06 [details] [associations]
symbol:HMG1 "High mobility group 1 protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005125 "cytokine
activity" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0009986
"cell surface" evidence=IEA] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0017055
"negative regulation of RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0030295 "protein
kinase activator activity" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005737 GO:GO:0017053 GO:GO:0005615
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0003700
GO:GO:0045860 GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280
GO:GO:0045819 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0045639 HSSP:P07155 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 GO:GO:0010858 GO:GO:2000426
EMBL:AADN02005232 EMBL:Y17968 EMBL:AJ851648 IPI:IPI00595982
RefSeq:NP_990233.1 UniGene:Gga.4638 SMR:Q9YH06 STRING:Q9YH06
Ensembl:ENSGALT00000027593 GeneID:395724 KEGG:gga:395724
InParanoid:Q9YH06 NextBio:20815793 Uniprot:Q9YH06
Length = 215
Score = 109 (43.4 bits), Expect = 0.00056, P = 0.00056
Identities = 30/124 (24%), Positives = 55/124 (44%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYE 142
K P P++P + + + ++K ++ L + ++ K +G+MW + D K Y
Sbjct: 90 KDPNAPKRPPSAFFLFCSEFRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPY----- 144
Query: 143 QEKNLKASTKLASISRPTWRAKAKASKPKQLRKSREARPKDSGEKMQIGRIDIQPAEDED 202
++K K K +RAK K K++ E K E+ D + EDE+
Sbjct: 145 EKKAAKLKEKYEK-DIAAYRAKGKVDAGKKVVAKAEKSKKKKEEEEDEDE-DEEDEEDEE 202
Query: 203 EQED 206
E+E+
Sbjct: 203 EEEE 206
>RGD|1587112 [details] [associations]
symbol:Hmg1l1 "high-mobility group (nonhistone chromosomal)
protein 1-like 1" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1587112
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00564933 RefSeq:XP_003748829.1
RefSeq:XP_003753270.1 Ensembl:ENSRNOT00000047765 GeneID:100909581
KEGG:rno:100909581 OMA:KEYHSAR Uniprot:D3ZL49
Length = 215
Score = 109 (43.4 bits), Expect = 0.00056, P = 0.00056
Identities = 30/128 (23%), Positives = 62/128 (48%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYE 142
K P P++P + + + ++K ++ L + ++ K +G+MW + D K Y +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWTNTAADDKQPYGKMAA 149
Query: 143 QEKNLKASTKLASISRPTWRAKAKASKPKQ----LRKSREARPKDSGEKMQIGRIDIQPA 198
+ K K +A+ +RAK K K+ KS++ + ++ E+ + + +
Sbjct: 150 KLKE-KYEKDIAA-----YRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEEK 203
Query: 199 EDEDEQED 206
EDEDE+E+
Sbjct: 204 EDEDEEEE 211
>MGI|MGI:1916567 [details] [associations]
symbol:Hmgb4 "high-mobility group box 4" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1916567 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861
HOVERGEN:HBG009000 CTD:127540 KO:K11297 OMA:RYQEEMM
OrthoDB:EOG4255TS HSSP:P17741 EMBL:AK005588 EMBL:BC061030
IPI:IPI00118961 RefSeq:NP_081312.2 UniGene:Mm.331893
ProteinModelPortal:Q6P8W9 SMR:Q6P8W9 PhosphoSite:Q6P8W9
PRIDE:Q6P8W9 Ensembl:ENSMUST00000053830 GeneID:69317 KEGG:mmu:69317
eggNOG:NOG288392 InParanoid:Q6P8W9 NextBio:329122 Bgee:Q6P8W9
CleanEx:MM_HMGB4 Genevestigator:Q6P8W9 Uniprot:Q6P8W9
Length = 181
Score = 94 (38.1 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 21/75 (28%), Positives = 36/75 (48%)
Query: 65 RGNVSQKMLT--AKTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKII 122
+ Q+M+ K R + PK P KP ++ +SR + +K +N D + ++ K
Sbjct: 68 KARYQQEMMNYIGKRRKRRKRDPKAPRKPPSSFLLFSRDHYAMLKQENPDWTVVQVAKAA 127
Query: 123 GQMWRDLPEDQKTEY 137
G+MW E +K Y
Sbjct: 128 GKMWSTTDEAEKKPY 142
Score = 47 (21.6 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 264 EAELQQIEEKFEAKKRKFVESSEQFQEELKKEKASCSEN 302
EAE + E+K + K+ E E ++ + + K + E+
Sbjct: 136 EAEKKPYEQKAALMRAKYFEEQEAYRNQCQGRKGNFLES 174
>WB|WBGene00001975 [details] [associations]
symbol:hmg-5 species:6239 "Caenorhabditis elegans"
[GO:0000003 "reproduction" evidence=IMP] [GO:0000784 "nuclear
chromosome, telomeric region" evidence=IDA] [GO:0042162 "telomeric
DNA binding" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0000003 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 EMBL:FO080446 GO:GO:0000784 GO:GO:0042162
Pfam:PF09011 eggNOG:NOG297801 KO:K11830
GeneTree:ENSGT00440000039001 PIR:T25760 RefSeq:NP_501245.1
ProteinModelPortal:Q94234 SMR:Q94234 STRING:Q94234 PaxDb:Q94234
EnsemblMetazoa:F45E4.9.1 EnsemblMetazoa:F45E4.9.2 GeneID:177543
KEGG:cel:CELE_F45E4.9 UCSC:F45E4.9 CTD:177543 WormBase:F45E4.9
HOGENOM:HOG000018012 InParanoid:Q94234 OMA:AMYIKEN NextBio:897284
Uniprot:Q94234
Length = 204
Score = 96 (38.9 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 31/136 (22%), Positives = 56/136 (41%)
Query: 66 GNVSQKMLTAKTDG-RGPKAPKPPEKPL-MPYMRYSRKVWDQVKAQNLDLKLWEIGKIIG 123
G +S + K R A P+ PL M Y+ + + KA D+K ++ K +
Sbjct: 3 GTISMRFFATKVVAPRASVAASTPQVPLGMNINPYAMFIKENFKANTSDMKRTDLMKELS 62
Query: 124 QMWRDLPEDQKTEYVEDYEQEKNLKASTKLASISRPTWRAKAKASKPKQLRKSREARPKD 183
W+ L +K +Y E + N + +S + ++K K+ ++ K+
Sbjct: 63 GKWKALSISEKDKYTE-LSKNYNAQKLDDFMKLSTEEQKKLVDSAKEKKAERASRRHAKE 121
Query: 184 SGEKM-QIGRIDIQPA 198
EK Q GR + P+
Sbjct: 122 RREKRKQSGRPSVPPS 137
Score = 47 (21.6 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 13/59 (22%), Positives = 33/59 (55%)
Query: 249 LKRQVQSLTMHQK-KLEAELQQIEEKFEAKKRKFVESSEQFQEE----LKKEKASCSEN 302
+K ++ M K K++ + Q + +++K+K+ + +++ ++E L+K +A EN
Sbjct: 143 IKEKLSGAGMESKEKMKEAVAQWKAFTDSQKKKYTDEAKKLKDEYHVVLQKWEAEQKEN 201
>UNIPROTKB|F1N8B1 [details] [associations]
symbol:LOC100857252 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 IPI:IPI00571034 OMA:DKERYMR
GeneTree:ENSGT00700000104521 EMBL:AADN02040486 EMBL:AADN02040487
EMBL:AADN02040488 EMBL:AADN02040489 EMBL:AADN02074740
EMBL:AADN02074741 EMBL:AADN02074742 EMBL:AADN02074743
Ensembl:ENSGALT00000004328 ArrayExpress:F1N8B1 Uniprot:F1N8B1
Length = 348
Score = 112 (44.5 bits), Expect = 0.00077, P = 0.00077
Identities = 56/237 (23%), Positives = 99/237 (41%)
Query: 50 VQSLTMHQHCQRVSRRG--NVSQK----MLTAKTDG--RGPKAPKP------PEKPLMPY 95
V+ L+ Q Q S N QK K G +G K KP P+ PL Y
Sbjct: 52 VEDLSQVQQLQNESTNTAENTEQKPEEEQQRTKRGGWAKGRKRKKPLRDSNAPKSPLTGY 111
Query: 96 MRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLAS 155
+R+ + +Q++A+ ++ EI +++G W LP ++K Y+++ +++K + +L
Sbjct: 112 VRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKRRYLDEADRDKE-RYMRELEQ 170
Query: 156 ISRPTWRAKAKASKPKQLRKSREARPKDSGEKMQIGRIDIQPAEDEDEQEDGY--SVKHV 213
K +A K RK+++ R K + R QP D +++ D SV +
Sbjct: 171 YQ------KTEAYKVFS-RKAQD-RQKGKSHRQDGAR---QPVHDHEKEADTKERSVFDI 219
Query: 214 A-YARYLRNHRLINEIFXXXXXXXXXXXXTTNRMQVLKRQVQSLTMHQKKLEAELQQ 269
+ NH E R L++ V+S+ +KLE ++ Q
Sbjct: 220 PIFTEEFLNHSKARE--AELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQ 274
>GENEDB_PFALCIPARUM|MAL8P1.72 [details] [associations]
symbol:MAL8P1.72 "high mobility group protein,
putative" species:5833 "Plasmodium falciparum" [GO:0006359
"regulation of transcription from RNA polymerase III promoter"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359
EMBL:AL844507 HOGENOM:HOG000197861 HSSP:P11632
GenomeReviews:AL844507_GR ProtClustDB:PTZ00199
RefSeq:XP_001349346.1 ProteinModelPortal:Q8IB14 IntAct:Q8IB14
MINT:MINT-1562034 EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422
KEGG:pfa:MAL8P1.72 EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV
Uniprot:Q8IB14
Length = 99
Score = 91 (37.1 bits), Expect = 0.00080, P = 0.00080
Identities = 24/79 (30%), Positives = 41/79 (51%)
Query: 69 SQKMLTAKTDGRGPKAPKPPEKPLMPYMRYSR-KVWDQVKAQ-NLDLKLWEIGKIIGQMW 126
SQK + K + + K P P++ L YM Y + K + +K + L + ++GK+IG+ W
Sbjct: 5 SQKKVLKKQNKKKKKDPLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAW 64
Query: 127 RDLPEDQKTEYVEDYEQEK 145
L QK Y + + +K
Sbjct: 65 GQLSPAQKAPYEKKAQLDK 83
>UNIPROTKB|Q8IB14 [details] [associations]
symbol:PfHMGB2 "High mobility group protein" species:36329
"Plasmodium falciparum 3D7" [GO:0006359 "regulation of
transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359 EMBL:AL844507
HOGENOM:HOG000197861 HSSP:P11632 GenomeReviews:AL844507_GR
ProtClustDB:PTZ00199 RefSeq:XP_001349346.1
ProteinModelPortal:Q8IB14 IntAct:Q8IB14 MINT:MINT-1562034
EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422 KEGG:pfa:MAL8P1.72
EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV Uniprot:Q8IB14
Length = 99
Score = 91 (37.1 bits), Expect = 0.00080, P = 0.00080
Identities = 24/79 (30%), Positives = 41/79 (51%)
Query: 69 SQKMLTAKTDGRGPKAPKPPEKPLMPYMRYSR-KVWDQVKAQ-NLDLKLWEIGKIIGQMW 126
SQK + K + + K P P++ L YM Y + K + +K + L + ++GK+IG+ W
Sbjct: 5 SQKKVLKKQNKKKKKDPLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAW 64
Query: 127 RDLPEDQKTEYVEDYEQEK 145
L QK Y + + +K
Sbjct: 65 GQLSPAQKAPYEKKAQLDK 83
>UNIPROTKB|Q0P5K4 [details] [associations]
symbol:TOX4 "TOX high mobility group box family member 4"
species:9913 "Bos taurus" [GO:0072357 "PTW/PP1 phosphatase complex"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0000785
"chromatin" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
GO:GO:0000785 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00560000076898 GO:GO:0072357
HOGENOM:HOG000230949 eggNOG:NOG284736 EMBL:BC119929 IPI:IPI00689806
RefSeq:NP_001069175.1 UniGene:Bt.51979 ProteinModelPortal:Q0P5K4
SMR:Q0P5K4 Ensembl:ENSBTAT00000020149 GeneID:515314 KEGG:bta:515314
CTD:9878 HOVERGEN:HBG051013 InParanoid:Q0P5K4 OMA:PPTLKMQ
OrthoDB:EOG4JT05P NextBio:20871764 ArrayExpress:Q0P5K4
Uniprot:Q0P5K4
Length = 619
Score = 115 (45.5 bits), Expect = 0.00085, P = 0.00085
Identities = 35/106 (33%), Positives = 49/106 (46%)
Query: 54 TMHQHCQRVSRRGNVSQKMLTAKTDGRGPKAPK------P--PEKPLMPYMRYSRKVWDQ 105
++H+ RR SQK + + G+ KAPK P P+KP+ Y + R
Sbjct: 182 SLHEDGVEEFRRQPPSQKTVVVEA-GKKQKAPKKRKKKDPNEPQKPVSAYALFFRDTQAA 240
Query: 106 VKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKN--LKA 149
+K QN + E+ KI+ MW L E+QK Y E K LKA
Sbjct: 241 IKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKA 286
>FB|FBgn0035238 [details] [associations]
symbol:CG12104 species:7227 "Drosophila melanogaster"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR009071
Pfam:PF00505 EMBL:AE014296 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00560000076898
eggNOG:NOG284736 EMBL:AY061531 RefSeq:NP_647629.1 UniGene:Dm.7697
SMR:Q9W0D2 EnsemblMetazoa:FBtr0072825 EnsemblMetazoa:FBtr0333360
GeneID:38187 KEGG:dme:Dmel_CG12104 UCSC:CG12104-RA
FlyBase:FBgn0035238 InParanoid:Q9W0D2 OMA:NECVVIH OrthoDB:EOG4C5B1G
GenomeRNAi:38187 NextBio:807418 Uniprot:Q9W0D2
Length = 250
Score = 109 (43.4 bits), Expect = 0.00086, P = 0.00086
Identities = 29/106 (27%), Positives = 46/106 (43%)
Query: 40 TNRMQVLKRQVQSLTMHQHCQRVSRRGNVSQKMLTAKTDGRGPKAPKPPEKPLMPYMRYS 99
+ RM L + + + ++C + G Q +L + + P KPL P+ +
Sbjct: 30 SRRMLSLDQSMLNDDDEENCDTYASGGG--QNLLVQPEQQQNQAMAQAPPKPLAPFALFF 87
Query: 100 RKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 145
R +K QN L ++ I+ MW L E QK Y +EQEK
Sbjct: 88 RDTVTAIKQQNPTCSLEQMQVIVQTMWESLDETQKNVYALRHEQEK 133
>RGD|1596979 [details] [associations]
symbol:LOC678705 "hypothetical protein LOC678705" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] REFSEQ:XM_001053005
Ncbi:XP_001053005
Length = 214
Score = 107 (42.7 bits), Expect = 0.00095, P = 0.00094
Identities = 28/125 (22%), Positives = 59/125 (47%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYE 142
K P P++P + + + ++K ++ L + ++ K +G++W + D K Y
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEIWNNTAADDKQPY----- 144
Query: 143 QEKNLKASTKLASISRPTWRAKAKASKPKQ-LRKSREARPKDSGEKMQIGRIDIQPAEDE 201
++K K K +RAK K K+ + K+ +++ K E + D + E+E
Sbjct: 145 EKKAAKLKEKYEK-DIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEEE 203
Query: 202 DEQED 206
+++ED
Sbjct: 204 EDEED 208
>MGI|MGI:1914117 [details] [associations]
symbol:Hmg20a "high mobility group 20A" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IMP] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IMP] [GO:0045665
"negative regulation of neuron differentiation" evidence=IGI;IDA]
[GO:0046982 "protein heterodimerization activity" evidence=IPI]
InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1914117 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0045665 GO:GO:0006351
GO:GO:0016568 GO:GO:0000122 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 CTD:10363
HOVERGEN:HBG059870 OMA:DKERYMR OrthoDB:EOG4H4643 ChiTaRS:HMG20A
EMBL:DQ182735 EMBL:AK004596 EMBL:AK017716 EMBL:AK032790
EMBL:AK039222 EMBL:AK086346 EMBL:AK134213 EMBL:BC013804
EMBL:BC068257 IPI:IPI00120110 IPI:IPI00228054 IPI:IPI00458691
IPI:IPI00473389 RefSeq:NP_080088.1 UniGene:Mm.150856
ProteinModelPortal:Q9DC33 SMR:Q9DC33 IntAct:Q9DC33 STRING:Q9DC33
PhosphoSite:Q9DC33 PaxDb:Q9DC33 PRIDE:Q9DC33
Ensembl:ENSMUST00000034879 GeneID:66867 KEGG:mmu:66867
UCSC:uc009ptb.1 UCSC:uc009ptc.1 UCSC:uc009ptd.1 UCSC:uc009pte.1
GeneTree:ENSGT00700000104521 InParanoid:Q9DC33 NextBio:322867
Bgee:Q9DC33 CleanEx:MM_HMG20A Genevestigator:Q9DC33
GermOnline:ENSMUSG00000032329 Uniprot:Q9DC33
Length = 346
Score = 111 (44.1 bits), Expect = 0.00098, P = 0.00098
Identities = 50/210 (23%), Positives = 88/210 (41%)
Query: 60 QRVSRRGNVSQKMLTAKTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIG 119
QR S+RG S K K R APK PL Y+R+ + +Q++A+ ++ EI
Sbjct: 79 QR-SKRGGWS-KGRKRKKPLRDSNAPK---SPLTGYVRFMNERREQLRAKRPEVPFPEIT 133
Query: 120 KIIGQMWRDLPEDQKTEYVEDYEQEKNLKASTKLASISRPTWRAKAKASKPKQLRKSREA 179
+++G W LP ++K Y+++ +++K + +L K +A K RK+++
Sbjct: 134 RMLGNEWSKLPPEEKQRYLDEADRDKE-RYMKELEQYQ------KTEAYKVFS-RKTQD- 184
Query: 180 RPKDSGEKMQIGRIDIQPAEDEDEQEDGYSVKHVAYARYLRNHRLINEIFXXXXXXXXXX 239
R K + R E E E ++ + NH E
Sbjct: 185 RQKGKSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFLNHSKARE--AELRQLRKSN 242
Query: 240 XXTTNRMQVLKRQVQSLTMHQKKLEAELQQ 269
R L++ V+S+ +KLE ++ Q
Sbjct: 243 MEFEERNAALQKHVESMRTAVEKLEVDVIQ 272
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.128 0.364 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 307 283 0.00084 115 3 11 23 0.41 34
33 0.42 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 85
No. of states in DFA: 593 (63 KB)
Total size of DFA: 199 KB (2111 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 36.80u 0.20s 37.00t Elapsed: 00:00:03
Total cpu time: 36.81u 0.20s 37.01t Elapsed: 00:00:03
Start: Thu Aug 15 16:20:28 2013 End: Thu Aug 15 16:20:31 2013