RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1937
(307 letters)
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster
(Cricetulus griseus) [TaxId: 10029]}
Length = 79
Score = 52.2 bits (125), Expect = 1e-09
Identities = 12/58 (20%), Positives = 29/58 (50%)
Query: 88 PEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 145
P++P + + + ++K ++ L + ++ K +G+MW + D K Y + + K
Sbjct: 3 PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 60
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 70
Score = 50.6 bits (121), Expect = 3e-09
Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 85 PKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQE 144
P +P+ +M +++ ++ D+ I KI+G W+ + +K Y E+ +
Sbjct: 1 PHIK-RPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARL 59
Query: 145 K 145
Sbjct: 60 S 60
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 50.7 bits (121), Expect = 5e-09
Identities = 15/70 (21%), Positives = 33/70 (47%)
Query: 76 KTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKT 135
+ G + P++P+ +S + Q++ + +L E+ +++ +MW DL E +K
Sbjct: 9 PSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKA 68
Query: 136 EYVEDYEQEK 145
+Y K
Sbjct: 69 KYKAREAALK 78
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 50.3 bits (120), Expect = 8e-09
Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 8/100 (8%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYE 142
+ P + P+ Y ++S+++ + +L LK E IG W+ + + QK Y + E
Sbjct: 4 GSSGPKKPPMNGYQKFSQELLSNGELNHLPLK--ERMVEIGSRWQRISQSQKEHYKKLAE 61
Query: 143 QEKNLKASTKLASISRPTWRAKAKASKPKQLRKSREARPK 182
+++ + + W ++ + K
Sbjct: 62 EQQ------RQYKVHLDLWVKSLSPQDRAAYKEYISNKRK 95
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 49.9 bits (119), Expect = 8e-09
Identities = 20/70 (28%), Positives = 38/70 (54%)
Query: 76 KTDGRGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKT 135
K R K P P++ L YM ++ + D V+++N D+ ++GK +G+ W+ L ++K
Sbjct: 9 KRTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQ 68
Query: 136 EYVEDYEQEK 145
Y + +K
Sbjct: 69 PYEAKAQADK 78
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 86
Score = 49.5 bits (118), Expect = 9e-09
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 90 KPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEKNLKA 149
KPL +M Y +++ V A++ + I +I+G+ W L +++ +Y E +E+
Sbjct: 5 KPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKER---- 60
Query: 150 STKLASISRPTWRAKAKASKPKQLRKSR 177
+L P W A+ K K+ ++ +
Sbjct: 61 --QLHMQLYPGWSARDNYGKKKKRKREK 86
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 49.1 bits (117), Expect = 1e-08
Identities = 12/58 (20%), Positives = 32/58 (55%)
Query: 88 PEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 145
++P+ ++ +SR ++ +N ++ EI K +G W+ L E +K + ++ ++ +
Sbjct: 5 VKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQ 62
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 48.4 bits (115), Expect = 2e-08
Identities = 19/66 (28%), Positives = 41/66 (62%)
Query: 80 RGPKAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVE 139
+ K P P+KPL PY R+ + + + ++ ++ KI+ + +++LPE +K +Y++
Sbjct: 3 KLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQ 62
Query: 140 DYEQEK 145
D+++EK
Sbjct: 63 DFQREK 68
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 45.6 bits (108), Expect = 1e-07
Identities = 9/60 (15%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 88 PEKPLMPYMRYSRKVWDQVKAQNLDLKLW--EIGKIIGQMWRDLPEDQKTEYVEDYEQEK 145
P + Y + + ++ K ++ D + E K + W+ + +K ++ + + +K
Sbjct: 2 PRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADK 61
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 45.9 bits (109), Expect = 2e-07
Identities = 13/58 (22%), Positives = 32/58 (55%)
Query: 88 PEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 145
++P+ +M +SR ++ +N + EI K +G W+ L E +K ++++ ++ +
Sbjct: 3 VKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 60
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 45.3 bits (107), Expect = 6e-07
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
Query: 83 KAPKPPEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYE 142
+P + P Y Y ++ +K D+ E + Q W+ L + +K Y + +
Sbjct: 13 FDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQKEKDAYHKKCD 68
Query: 143 QEKNL-KASTKLASISRPTWRAKAKASKPKQLRKS 176
Q+K + S P + + K L S
Sbjct: 69 QKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNIS 103
>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId: 7227]}
Length = 73
Score = 44.0 bits (104), Expect = 6e-07
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 88 PEKPLMPYMRYSRKVWDQVKAQNLDLKLWEIGKIIGQMWRDLPEDQKTEYVEDYEQEK 145
P++PL YM + + +K +N +K+ E+ K G++WR K+E+ + K
Sbjct: 4 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWR--AMKDKSEWEAKAAKAK 59
>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 123
Score = 27.2 bits (60), Expect = 1.2
Identities = 15/123 (12%), Positives = 38/123 (30%), Gaps = 18/123 (14%)
Query: 127 RDLPEDQKTEYVEDYEQEKNLKASTKLASISRPT---WRAKAKASKPKQLRKSREARPKD 183
R LP + + + VE ++ +S + + + + ++P+
Sbjct: 15 RPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRI 74
Query: 184 SGEKMQIGRIDIQPAEDEDEQEDGYSVKHVAYARYLRNHRLINEIFSDSVVPDVRSVVTT 243
+ + RI+ ++ +R + + S P SV
Sbjct: 75 ATPE-IENRIEEYKRSSPG-----------MFSWEIREKLIREGVCDRSTAP---SVSAI 119
Query: 244 NRM 246
+R+
Sbjct: 120 SRL 122
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal
domain {Moorella thermoacetica [TaxId: 1525]}
Length = 249
Score = 26.9 bits (58), Expect = 3.1
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 12/55 (21%)
Query: 92 LMPYMRYSRKVWDQVKAQNLDLKLWEIGKII---GQMWRDLPEDQKTEYVEDYEQ 143
LMP+ K D+++ NL +K I G +WR P +E Y +
Sbjct: 199 LMPFSNLITKKLDEIQKINLAIKT-----IAPSHGIIWRKDPG----RIIEAYAR 244
>d1izma_ a.199.1.1 (A:) Hypothetical protein HI0817 {Haemophilus
influenzae [TaxId: 727]}
Length = 170
Score = 26.0 bits (57), Expect = 4.3
Identities = 3/21 (14%), Positives = 9/21 (42%)
Query: 188 MQIGRIDIQPAEDEDEQEDGY 208
I ++ ++E+E +
Sbjct: 131 QDICQLGYDEDDNEEELAEAL 151
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.128 0.361
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,078,957
Number of extensions: 47965
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 41
Length of query: 307
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 222
Effective length of database: 1,240,546
Effective search space: 275401212
Effective search space used: 275401212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.3 bits)