BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy194
(525 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src
Substrate Cortactin
Length = 79
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 59/67 (88%)
Query: 459 GTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPA 518
GT ++ E DLG TAVALYDYQA+ DDEISFDPDDIITNIEMID+GWWRG C G+YGLFPA
Sbjct: 7 GTYDEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPA 66
Query: 519 NYVSLQQ 525
NYV L+Q
Sbjct: 67 NYVELRQ 73
>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|B Chain B, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|C Chain C, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|D Chain D, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
Length = 66
Score = 111 bits (278), Expect = 9e-25, Method: Composition-based stats.
Identities = 51/62 (82%), Positives = 56/62 (90%)
Query: 464 TEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
+E DLG TAVALYDYQA+ DDEISFDPDDIITNIEMID+GWWRG C G+YGLFPANYV L
Sbjct: 5 SENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVEL 64
Query: 524 QQ 525
+Q
Sbjct: 65 RQ 66
>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A
Hetero- Trimericcortactin:arg:lysozyme Complex
Length = 65
Score = 109 bits (273), Expect = 4e-24, Method: Composition-based stats.
Identities = 49/59 (83%), Positives = 54/59 (91%)
Query: 467 DLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ 525
DLG TA+ALYDYQA+ DDEISFDPDDIITNIEMID+GWWRG C G+YGLFPANYV L+Q
Sbjct: 7 DLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQ 65
>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
pdb|2BZ8|B Chain B, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
Length = 58
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
A+ +DYQA DDE++ +IITNI D GWW G +G+ GLFP N+V
Sbjct: 4 AIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFV 53
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 31/52 (59%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
+ +YDY A DDE++F II + D WW+G GQ GLFP+NYV L
Sbjct: 5 VIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKL 56
>pdb|1JO8|A Chain A, Structural Analysis Of The Yeast Actin Binding Protein
Abp1 Sh3 Domain
Length = 58
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYVSL 523
A A YDY A+ D+E++F +D I NIE +D+ WW G G GLFP+NYVSL
Sbjct: 3 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 56
>pdb|2RPN|A Chain A, A Crucial Role For High Intrinsic Specificity In The
Function Of Yeast Sh3 Domains
Length = 59
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYVSL 523
A A YDY A+ D+E++F +D I NIE +D+ WW G G GLFP+NYVSL
Sbjct: 4 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 57
>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|3IQL|B Chain B, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|2KNB|B Chain B, Solution Nmr Structure Of The Parkin Ubl Domain In Complex
With The Endophilin-A1 Sh3 Domain
Length = 71
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 30/50 (60%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
ALYD++ + E+ F DIIT IDE W+ G HGQ G FP NYV +
Sbjct: 16 ALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGQSGFFPINYVEI 65
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
G +A+YDY A+ +DE+SF +I + D WW+G +G GLFP+NYV +
Sbjct: 18 GCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKM 72
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
AL+D+ D E+ F D I ++ D WW+G CHGQ G+FP NYV+
Sbjct: 163 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVT 211
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 472 AVALYDYQASADDEISFDPDDIITNI-EMIDEGWWRGYCHGQYGLFPANYVSLQ 524
A+A YD++A+ADDE+SF DI+ + E D+ W++ +G+ G P NY+ ++
Sbjct: 3 AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMK 56
>pdb|2K3B|A Chain A, Seeing The Invisible: Structures Of Excited Protein States
By Relaxation Dispersion Nmr
Length = 62
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYVSL 523
A A YDY A+ D+E++F +D I NIE +D+ WW G G GLFP+NYVSL
Sbjct: 7 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 60
>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3-
Containing Grb2-Like Protein 2
Length = 73
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 29/50 (58%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
ALYD++ + E+ F DIIT IDE W+ G HG G FP NYV +
Sbjct: 12 ALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEI 61
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
AL+D+ D E+ F D I ++ D WW+G CHGQ G+FP NYV+
Sbjct: 5 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVT 53
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 35/49 (71%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
A+YD++A+ D+E++F +IIT ++ D WW+G H GLFP+N+V+
Sbjct: 22 AIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVT 70
>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN
pdb|1OEB|B Chain B, MonaGADS SH3C DOMAIN
pdb|2W10|A Chain A, Mona Sh3c In Complex
pdb|2W10|B Chain B, Mona Sh3c In Complex
Length = 62
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
A ALYD++A +DE+ F +++ ++ + WW G H + GLFPANYV+
Sbjct: 8 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVA 58
>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE
Length = 58
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
A ALYD++A +DE+ F +++ ++ + WW G H + GLFPANYV+
Sbjct: 4 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVA 54
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
AL+D+ D E+ F D I ++ D WW+G CHGQ G+FP NYV+
Sbjct: 7 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVT 55
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
AL+D+ D E+ F D I ++ D WW+G CHGQ G+FP NYV+
Sbjct: 7 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVT 55
>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An
Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal
Sh3 Domain
Length = 60
Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
A ALYD++A +DE+ F +++ ++ + WW G H + GLFPANYV+
Sbjct: 6 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVA 56
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
AL+D+ D E+ F D I ++ D WW+G CHGQ G+FP NYV+
Sbjct: 7 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVT 55
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
ALYD++ D E+ F D+IT IDE W+ G HGQ G FP +YV +
Sbjct: 18 ALYDFEPENDGELGFREGDLITLTNQIDENWYEGXLHGQSGFFPLSYVQV 67
>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
pdb|2D0N|C Chain C, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
Length = 59
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
A ALYD++A +DE+ F +++ ++ + WW G H + GLFPANYV+
Sbjct: 5 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVA 55
>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures
pdb|1NEB|A Chain A, Sh3 Domain From Human Nebulin, Nmr, Minimized Average
Structure
Length = 60
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYV 521
A+YDY A+ DE+SF D I N++ IDEGW G G+ G+ PANYV
Sbjct: 8 AMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYV 57
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
G ALY +QA DDE++ + DI+ E +EGWW G +G+ G FPA YV
Sbjct: 7 GRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYV 59
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
+A+YDY A+ +DE+SF +I + D WW+G +G GLFP+NYV +
Sbjct: 37 VIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKM 88
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
ALY Y A DE+SF+ +DII I+ GWW G G+ GLFP NYV+
Sbjct: 10 ALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVT 58
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
LYD++ E+ F DIIT IDE W+ G HG+ G FP NYV +
Sbjct: 8 GLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEV 57
>pdb|1YWO|A Chain A, Phospholipase Cgamma1 Sh3 In Complex With A Slp-76 Motif
pdb|1YWP|A Chain A, Phospholipase Cgamma1 Sh3
Length = 64
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGL-FPANYV 521
AL+DY+A +DE++F II N+E D GWWRG G+ L FP+NYV
Sbjct: 11 ALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYV 59
>pdb|1Y0M|A Chain A, Crystal Structure Of Of The Sh3 Domain Of Phospholipase C
Gamma-1
Length = 61
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGL-FPANYV 521
AL+DY+A +DE++F II N+E D GWWRG G+ L FP+NYV
Sbjct: 8 ALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYV 56
>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1
Length = 60
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYV 521
A+YDY A+ +DE+SF D I N++ ID+GW G G G+ PANYV
Sbjct: 8 AVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYV 57
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ 525
ALY ++ DE+ F+ DII +M D WW+G G+ GL P+NYV+ Q
Sbjct: 12 ALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQS 63
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
VA+YDY +DE+SF II I+ D+GW+ G +G GLFP NYV
Sbjct: 20 VVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYV 69
>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein
Length = 92
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 459 GTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPA 518
GTN+ E VA + Y DDE+ DII + ++EGWW G +G+ G+FP+
Sbjct: 9 GTNKRGERRRRRCQVA-FSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPS 67
Query: 519 NYV 521
N++
Sbjct: 68 NFI 70
>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|B Chain B, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|C Chain C, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|D Chain D, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
Length = 54
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/48 (56%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMID-EGWWRGYCHGQYGLFPANY 520
A+Y Y+A DDEIS DP DIIT I D GW G C G GLFP +Y
Sbjct: 5 AIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSY 52
>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In Complex
With A Peptide Of Xirp2
Length = 64
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYVSL 523
T A+YDY A +DE+SF D I N++ ID+GW G G+ G+ PANY+
Sbjct: 8 TYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEF 62
>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein
Length = 68
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
G T VALY + ++++ P DIIT +E +E WW+G + G FPAN+V
Sbjct: 7 GNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFV 59
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ 524
ALY ++ DE+ F+ DII +M D WW+G G+ GL P+NYV+ Q
Sbjct: 8 ALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ 58
>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of
Cd2ap
Length = 60
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 468 LGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
+G L+DY +DE+ D+I IE ++EGWW G + + GLFP+N+V
Sbjct: 3 MGRQCKVLFDYSPQNEDELELIVGDVIDVIEEVEEGWWSGTLNNKLGLFPSNFV 56
>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
pdb|3HAJ|B Chain B, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
Length = 486
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDE-GWWRGYC-HGQYGLFPANYV 521
ALYDY+ DE+SF D +T +E DE GW +G +GQ GL+PANYV
Sbjct: 433 ALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYV 482
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
ALYD++A D+E++F ++IT ++ D WW+G H GLFP+N+V+
Sbjct: 10 ALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT 58
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
ALYD++A D+E++F +II ++ D WW+G H GLFP+N+V+
Sbjct: 22 ALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVT 70
>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85
Adapter Protein
Length = 73
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 474 ALYDYQASADDEISFDPDDIITNI--EMIDEGWWRGYCHGQYGLFPANYVSL 523
++ Y+A DDE++ DI+T I + ID GWW G +G+ G+FP N+V L
Sbjct: 14 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 65
>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85
Length = 69
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 475 LYDYQASADDEISFDPDDIIT--NIEMIDEGWWRGYCHGQYGLFPANYVSL 523
++ Y+A DDE++ DI+T N + ID GWW G +G+ G+FP N+V L
Sbjct: 8 IFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 58
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 472 AVALYDYQASADDEISFDPDDIITNI-EMIDEGWWRGYCHGQYGLFPANYVSLQ 524
A+A YD++A+ADDE+SF DI+ + E D+ W++ +G+ G P NY+ ++
Sbjct: 12 AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMK 65
>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck1
Length = 88
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 467 DLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
DL A ++Y A +DE+S + +E +GWWRG +GQ G FP+NYV+
Sbjct: 15 DLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVT 70
>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1 (Regulator Of Ubiquitous
Kinase, Ruk)
Length = 70
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 474 ALYDYQASADDEISFDPDDIITNI--EMIDEGWWRGYCHGQYGLFPANYVSL 523
++ Y+A DDE++ DI+T I + ID GWW G +G+ G+FP N+V L
Sbjct: 12 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 63
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4 And
Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
Length = 59
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 468 LGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
LG A +++Q + +DE+SF D+I + + GWW G +G+ G FP+NYV
Sbjct: 3 LGSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 56
>pdb|1HSQ|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
pdb|2HSP|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
Length = 71
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGL-FPANYV 521
AL+DY+A +DE++F II N+E + GWWRG G+ L FP+NYV
Sbjct: 11 ALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYV 59
>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin
Length = 62
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 475 LYDYQASADDEISFDPDDIIT--NIEMIDEGWWRGYCHGQYGLFPANYVSL 523
++ Y+A DDE++ DI+T N + ID GWW G +G+ G+FP N+V L
Sbjct: 9 IFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 59
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
A +++Q + +DE+SF D+I + + GWW G +G+ G FP+NYV
Sbjct: 13 AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYV 60
>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
pdb|4IIM|B Chain B, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
Length = 70
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
A ALY ++A D+ ++F+ +D+IT +E D WW G GQ G FP +YV L
Sbjct: 15 AQALYPWRAKKDNHLNFNKNDVITVLEQQDM-WWFGEVQGQKGWFPKSYVKL 65
>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase
Binding Protein 1
Length = 68
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 476 YDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
+ Y DDE+ DII + ++EGWW G +G+ G+FP+N++
Sbjct: 14 FSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFI 59
>pdb|2A36|A Chain A, Solution Structure Of The N-Terminal Sh3 Domain Of Drk
pdb|2AZS|A Chain A, Nmr Structure Of The N-Terminal Sh3 Domain Of Drk
(Calculated Without Noe Restraints)
Length = 59
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEG-WWRGYCHGQYGLFPANYVSLQ 524
A+A +D+ A+ADDE+SF I+ + M D+ W+R G+ GL P+NY+ ++
Sbjct: 3 AIAKHDFSATADDELSFRKTQILKILNMEDDSNWYRAELDGKEGLIPSNYIEMK 56
>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain
pdb|2A08|B Chain B, Structure Of The Yeast Yhh6 Sh3 Domain
Length = 60
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDE--GWWRGYCHGQYGLFPANYVSL 523
TAVALY++ +++F D+IT ++ D WW G +G+ G+FPANYV +
Sbjct: 5 TAVALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYVRV 59
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
A +++Q + +DE+SF D+I + + GWW G +G+ G FP+NYV
Sbjct: 11 AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58
>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And Tbc1
Domain Containing 3
Length = 78
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
G A AL D++ DDE+ F +DIIT I DE W G +G G FPA +V +
Sbjct: 7 GRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEV 61
>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Drkn Sh3 Domain)
pdb|2AZV|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Calculated Without Noes)
Length = 59
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDE-GWWRGYCHGQYGLFPANYVSLQ 524
A+A +D+ A+ADDE+SF I+ + M D+ W+R G+ GL P+NY+ ++
Sbjct: 3 AIAKHDFSATADDELSFRKGQILKILNMEDDSNWYRAELDGKEGLIPSNYIEMK 56
>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck
Length = 61
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 468 LGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
L A ++Y A +DE+S + +E +GWWRG +GQ G FP+NYV+
Sbjct: 3 LNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVT 57
>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|E Chain E, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 60
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDE-GWWRGYC-HGQYGLFPANYV 521
G ALYDY DE+SF D +T + DE GW RG GQ GL+PANYV
Sbjct: 3 GVRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYV 57
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
Length = 61
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
A +++Q + +DE+SF D+I + + GWW G +G+ G FP+NYV
Sbjct: 11 AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58
>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Adaptor Protein Nck2
Length = 57
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
A + Y A +DE+S +T +E +GWWRG +GQ G FP+NYV
Sbjct: 3 AFVKFAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYV 52
>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3
pdb|1ZX6|A Chain A, High-Resolution Crystal Structure Of Yeast Pin3 Sh3 Domain
Length = 58
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
ALY + D ++ P D + +E + W++G C+G+ G+FPANYV
Sbjct: 7 ALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYV 54
>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin
Length = 68
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
G A +D+QA + E++ DI+ + +D+ W G HG+ G+FPANYV +
Sbjct: 7 GKAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEV 61
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
AL+D+ E++F D+IT I D WW G + + G+FP+NYV+
Sbjct: 9 ALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVA 57
>pdb|2CRE|A Chain A, Solution Structure Of Rsgi Ruh-036, An Sh3 Domain From
Human Cdna
Length = 71
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEM---IDEGWWRGYCHGQYGLFPANYVSL 523
G A ALYD DE++F DI+T +E EGWW+ HG+ GL PAN + +
Sbjct: 7 GLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQI 64
>pdb|4E6R|A Chain A, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
pdb|4E6R|B Chain B, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
Length = 58
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
A + Y A +DE+S +T E +GWWRG +GQ G FP+NYV
Sbjct: 4 AFVXFAYVAEREDELSLVXGSRVTVXEXCSDGWWRGSYNGQIGWFPSNYV 53
>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein At 1.39 A Resolution
pdb|1SSH|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein In Complex With A Peptide
Length = 60
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDE--GWWRGYCHGQYGLFPANYVSL 523
AVALY + ++ F D+IT ++ D WW G +G+ G+FPANYV L
Sbjct: 6 AVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVEL 59
>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical
Protein Sh3yl1
Length = 80
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEG--WWRGYCHGQYGLFPANYVSL 523
ALY ++ +++F D IT I D WW G GQ G+FPANYV++
Sbjct: 20 VTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTM 73
>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement Tag
(Inset) Using A Sortase-Mediated Protein Ligation Method
Length = 142
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNI-EMIDEGWWRGYCHGQYGLFPANYV 521
TA A YD+ A E+S DII + + +GWWRG +G+ G FP+NYV
Sbjct: 7 TAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYV 58
>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
pdb|4ESR|B Chain B, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
Length = 69
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 467 DLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC-HGQYGLFPANYVS 522
D T VALYDY A+ DE++ DII +E WW G GQ G FPAN+V+
Sbjct: 4 DTAPTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVA 60
>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin And Its Interaction With The Peptides From
Vinculin
Length = 65
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 476 YDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
+D+QA + E++ DI+ + +D+ W G HG+ G+FPANYV +
Sbjct: 8 FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEV 55
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ 524
ALY ++ DE+ + DII + D WW+G G+ GL P+NYV+ Q
Sbjct: 19 ALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPSNYVAEQ 69
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 472 AVALYDYQASADDEISFDPDDIITNI-EMIDEGWWRGYCHGQYGLFPANYVSLQ 524
A+A D++A+ADDE+SF DI+ + E D+ W++ +G+ G P NY+ ++
Sbjct: 3 AIAKVDFKATADDELSFKRGDILKVLNEESDQNWYKAELNGKDGFIPKNYIEMK 56
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 28/53 (52%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
G ALYDY A DE++F D I + GWW G +G+ G PANYV
Sbjct: 4 GIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYV 56
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 28/53 (52%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
G ALYDY A DE++F D I + GWW G +G+ G PANYV
Sbjct: 3 GIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYV 55
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
AL+D+ E++F D+IT I D WW G + + G+FP+NYV
Sbjct: 7 ALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms
Protein
Length = 65
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 475 LYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
L++Y +DE+ DII E ++EGWW G + + GLFP+N+V
Sbjct: 7 LFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFV 53
>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant)
Length = 62
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
+ALYDYQ + E++ DI+T + ++ WW+ +G+ G PA YV
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKTEVNGRQGFVPAAYV 58
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
AL+D+ E++F D+IT I D WW G + + G+FP+NYV
Sbjct: 7 ALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
>pdb|1J3T|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 74
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
A AL + A D+ ++F DIIT +E E WW G HG G FP +YV +
Sbjct: 13 AQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKI 63
>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3 Domain
From Human Cd2ap (Cms) In Complex With A Proline-Rich
Peptide From Human Rin3
Length = 65
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 475 LYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
L++Y +DE+ DII E ++EGWW G + + GLFP+N+V
Sbjct: 13 LFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFV 59
>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant
Length = 57
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
+ALYDYQ + E++ DI+T + ++ WW+ +G+ G PA YV
Sbjct: 4 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNGRQGFVPAAYV 53
>pdb|2EQI|A Chain A, Solution Structure Of The Sh3 Domain From Phospholipase C,
Gamma 2
Length = 69
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 9/58 (15%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYG-----LFPANYV 521
G T ALYDY+A DE++F +I N+ GWW+ G YG FP+NYV
Sbjct: 7 GRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWK----GDYGTRIQQYFPSNYV 60
>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE
Nucleotide Exchange Factor(Gef) 6
Length = 76
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
A ++++ + +DE+S DII + + GWW G +G+ G FP+NYV
Sbjct: 15 ARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYV 62
>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Sorbin
And Sh3 Domain-Containing Protein 1
Length = 68
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
G A A +D++A E+ DI+ + ID+ W+ G HG+ G+FP Y+ L
Sbjct: 7 GRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIEL 61
>pdb|4GLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|B Chain B, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|C Chain C, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|D Chain D, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
Length = 72
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
VALY +QA +E+ F+ D I + +++GW G G+ G+FP +V L
Sbjct: 16 GVALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKL 67
>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 4.
pdb|3M0Q|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 5.
pdb|3M0R|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 6.
pdb|3M0T|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 9.
pdb|3M0U|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Hexagonal Crystal Obtained In Sodium Formate At
Ph 6.5
Length = 62
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
+ALYDYQ + DE++ DI+T + ++ WW+ + + G PA YV
Sbjct: 9 VLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 58
>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 7
Length = 57
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
+ALYDYQ + DE++ DI+T + ++ WW+ + + G PA YV
Sbjct: 4 VLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 53
>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of
Alpha Spectrin Sh3 Domain
Length = 57
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
+ALYDYQ D E++ DI+T + ++ WW+ + + G PA YV
Sbjct: 4 VLALYDYQEKGDSEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 53
>pdb|1WYX|A Chain A, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
pdb|1WYX|B Chain B, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
Length = 69
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 468 LGYTAVALYDYQASADDEISFDPDDIITNIEMIDE---GWWRGYCHGQYGLFPANYVSL 523
L A ALYD A + DE+SF DI+T +E + GWW HG+ G+ P N + +
Sbjct: 2 LNVLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKI 60
>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Intersectin2 (Kiaa1256)
Length = 93
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 474 ALYDYQASADDEISFDPDDIITNIE--MIDEGWWRGYCHGQYGLFPANYV 521
ALY ++A DE+SF+ DII E + + GW G G +G FP NYV
Sbjct: 10 ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYV 59
>pdb|2M0Y|A Chain A, Solution Structure Of The Sh3 Domain Of Dock180
Length = 74
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC---HGQYGLFPANYVSLQQ 525
VA Y+Y A DE+S D + +E EGW+RGY + G+FPA+Y+ L++
Sbjct: 14 GVAFYNYDARGADELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPASYIHLKE 69
>pdb|1WXU|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Peroxisomal
Biogenesis Factor 13
Length = 93
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 459 GTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDE-----GWWRGYCHGQ- 512
GTN + ED A A YD+ A +D+EISF D++ N+ + ++ GW GQ
Sbjct: 7 GTNWASGEDDHVVARAEYDFVAVSDEEISFRAGDML-NLALKEQQPKVRGWLLASLDGQT 65
Query: 513 YGLFPANYVSL 523
GL PANYV +
Sbjct: 66 TGLIPANYVKI 76
>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr
Length = 64
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 464 TEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYV 521
T +DL ++ ALY Y DDE+ DI+ +E D+GW+ G Q+G FP NYV
Sbjct: 2 TSQDL-FSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYV 60
>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant
Length = 62
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
+ALYDYQ + E++ DI+T + ++ WW+ + + G PA+YV
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPASYV 58
>pdb|2KRM|A Chain A, Rdc Refined Solution Structure Of The First Sh3 Domain Of
Cd2ap
Length = 57
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 476 YDYQASADDEISFDPDDIITNIEMI-DEGWWRGYCHGQYGLFPANYV 521
YDY A DDE++ +II N++ + +EGW G +G+ G+FP N+V
Sbjct: 7 YDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFV 53
>pdb|2J6F|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog) Bound
To Cbl-B Peptide
pdb|2J6K|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|B Chain B, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|C Chain C, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|D Chain D, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|E Chain E, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|F Chain F, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|G Chain G, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|H Chain H, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|I Chain I, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|J Chain J, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|K Chain K, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|L Chain L, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6O|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterotrimer
pdb|2J7I|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterodimer
pdb|2J7I|B Chain B, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterodimer
Length = 62
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 476 YDYQASADDEISFDPDDIITNIEMI-DEGWWRGYCHGQYGLFPANYV 521
YDY A DDE++ +II N++ + +EGW G +G+ G+FP N+V
Sbjct: 8 YDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFV 54
>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of P67phox
Complexed With The C-Terminal Tail Region Of P47phox
Length = 62
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
AL+ Y+A+ +++ F DII + ++E W G G+ G+FP +V
Sbjct: 10 ALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFV 57
>pdb|3THK|A Chain A, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
pdb|3THK|B Chain B, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
Length = 73
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
+ALYDYQ + E++ DI+T + ++ WW+ + + G PA YV
Sbjct: 8 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 57
>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl
Length = 65
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 464 TEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYV 521
T +DL ++ ALY Y DDE+ DI+ +E D+GW+ G Q+G FP NYV
Sbjct: 2 TSQDL-FSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYV 60
>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled
Sh3- Domain Of Alpha-Chicken Spectrin
Length = 83
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
+ALYDYQ + E++ DI+T + ++ WW+ + + G PA YV
Sbjct: 20 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 69
>pdb|2F2V|A Chain A, Alpha-Spectrin Sh3 Domain A56g Mutant
Length = 62
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
+ALYDYQ + E++ DI+T + ++ WW+ + + G PA YV
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAGYV 58
>pdb|2LJ3|A Chain A, Pfbd: High-Throughput Strategy Of Backbone Fold
Determination For Small Well-Folded Proteins In Less
Than A Day
Length = 63
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
+ALYDYQ + E++ DI+T + ++ WW+ + + G PA YV
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 58
>pdb|1M8M|A Chain A, Solid-State Mas Nmr Structure Of The A-Spectrin Sh3 Domain
pdb|1U06|A Chain A, Crystal Structure Of Chicken Alpha-Spectrin Sh3 Domain
pdb|2NUZ|A Chain A, Crystal Structure Of Alpha Spectrin Sh3 Domain Measured At
Room Temperature
pdb|1AEY|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Solution Nmr, 15
Structures
pdb|1SHG|A Chain A, Crystal Structure Of A Src-Homology 3 (Sh3) Domain
Length = 62
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
+ALYDYQ + E++ DI+T + ++ WW+ + + G PA YV
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 58
>pdb|2DL7|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Kiaa0769 Protein
Length = 73
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 474 ALYDYQASADDEISFDPDDIITNI----EMIDEGWWRGYCHGQYGLFPANYV 521
ALYDY+ DDE+SF P+ I I D+G+W G +G+ G+FP+ V
Sbjct: 13 ALYDYEGQTDDELSF-PEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLV 63
>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Protein Vav-2
Length = 73
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMI--DEGWWRGYCHGQYGLFPANYV 521
TAVA Y++ A E+S D++ I D+GWW+G +G+ G FP+ YV
Sbjct: 9 TAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYV 61
>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of
Its Circular Permutants With Different Loop Lengths:
Discerning The Reasons For Rapid Folding In Proteins
Length = 61
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
+ALYDYQ + E++ DI+T + ++ WW+ + + G PA YV
Sbjct: 8 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 57
>pdb|2EPD|A Chain A, Solution Structure Of Sh3 Domain In Rho-Gtpase-Activating
Protein 4
Length = 76
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
AVA + Y E+SF D++ E WWRG +G GL P Y++L
Sbjct: 13 AVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITL 64
>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant
pdb|2JM8|A Chain A, R21a Spc-Sh3 Free
pdb|2JM9|A Chain A, R21a Spc-Sh3 Bound
pdb|2JMA|A Chain A, R21a Spc-Sh3:p41 Complex
Length = 62
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
+ALYDYQ + E++ DI+T + ++ WW+ + + G PA YV
Sbjct: 9 VLALYDYQEKSPAEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 58
>pdb|3NGP|A Chain A, High Resolution Structure Of Alpha-Spectrin Sh3 Domain
Mutant With A Redesigned Core
Length = 62
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
+ LYDYQ + E++ DI+T + ++ WW+ +G+ G PA Y+
Sbjct: 9 VLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYL 58
>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant
Length = 62
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
+ALYDYQ + E++ DI+T + ++ WW+ + + G PA YV
Sbjct: 9 VLALYDYQEKSPGEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 58
>pdb|2RF0|A Chain A, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|B Chain B, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|C Chain C, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|D Chain D, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
Length = 89
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 6/55 (10%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMI-----DEGWWRGYC-HGQYGLFPANYVS 522
A++DY+A+ D+E++ D + + DEGWW G G+ G+FP+NYV+
Sbjct: 34 AVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVA 88
>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox)
pdb|2DYB|B Chain B, The Crystal Structure Of Human P40(Phox)
Length = 341
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
A AL+D+ ++ E++F D+I + I++ W G G G+FP ++V +
Sbjct: 177 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 228
>pdb|1QKX|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47a Mutant In The
Distal Loop
Length = 62
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
+ALYDYQ + E++ DI+T + ++ WW+ + G PA YV
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVADRQGFVPAAYV 58
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline-
Serine-Threonine Phosphatase-Interacting Protein 1
Length = 69
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
ALYDY A DE+ DI+ I ++GWW +GQ G P +Y+
Sbjct: 13 ALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYL 60
>pdb|1HD3|A Chain A, A-Spectrin Sh3 Domain F52y Mutant
Length = 62
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
+ALYDYQ + E++ DI+T + ++ WW+ + + G PA YV
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGYVPAAYV 58
>pdb|2ED1|A Chain A, Solution Structure Of The Sh3 Domain Of 130 Kda
Phosphatidylinositol 4,5-Biphosphate-Dependent Arf1
Gtpase- Activating Protein
Length = 76
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQ---YGLFPANYVSL 523
+YD QA DDE++F ++I D+ WW G+ GQ G+FP ++V +
Sbjct: 15 TIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHI 67
>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The
Distal Loop
Length = 62
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
+ALYDYQ + E++ DI+T + ++ WW+ + G PA YV
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVGDRQGFVPAAYV 58
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYVS 522
VALYDY+A +D++SF + + + WW R G+ G P+NYV+
Sbjct: 7 VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 58
>pdb|2D8J|A Chain A, Solution Structure Of The Sh3 Domain Of Fyn-Related Kinase
Length = 77
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWW-------RGYCHGQ--YGLFPANYVS 522
VAL+DYQA +++SF D + ++ EGWW +G GQ G P+NYV+
Sbjct: 11 VALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVA 69
>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W6X|B Chain B, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W70|A Chain A, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
pdb|1W70|B Chain B, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
Length = 60
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
A AL+D+ ++ E++F D+I + I++ W G G G+FP ++V +
Sbjct: 7 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 58
>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap
pdb|2KRO|A Chain A, Rdc Refined High Resolution Structure Of The Third Sh3
Domain Of Cd2ap
Length = 64
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 475 LYDYQASADDEISFDPDDIITNI--EMIDEGWWRGYCHGQYGLFPANY 520
L+ Y + +DE++F +II I E + GWW+G +G+ G+FP N+
Sbjct: 12 LFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNF 59
>pdb|2RQT|A Chain A, Solution Structure Of The Human Ddef1 Sh3 Domain
pdb|2RQU|A Chain A, Solution Structure Of The Complex Between The Ddef1 Sh3
Domain And The Apc Samp1 Motif
Length = 61
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQ---YGLFPANYVSL 523
+YD QA DDE++F ++I D+ WW G+ GQ G+FP ++V +
Sbjct: 6 TIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHI 58
>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox
Length = 79
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
A AL+D+ ++ E++F D+I + I++ W G G G+FP ++V +
Sbjct: 21 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 72
>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine
Nucleotide Exchange Factor 9
Length = 81
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
+A A++D+ A+ E++F D+I ++ ++ WW G + G FPA++V L
Sbjct: 12 SAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRL 64
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein
(Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus
Musculus At 1.98 A Resolution
Length = 164
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYVS 522
VALYDY+A +D++SF + + + WW R G+ G P+NYV+
Sbjct: 8 VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 59
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYVS 522
VALYDY+A +D++SF + + + WW R G+ G P+NYV+
Sbjct: 19 VALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 70
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide P2l
Corresponding To Residues 91-104 Of The P85 Subunit Of
Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYVS 522
VALYDY+A +D++SF + + + WW R G+ G P+NYV+
Sbjct: 9 VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 60
>pdb|1E6G|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25i, V53i, V58l Mutant
Length = 62
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
+ LYDYQ + E++ DI+T + ++ WW+ + + G PA Y+
Sbjct: 9 VLVLYDYQEKSPRELTIKKGDILTLLNSTNKDWWKVEVNDRQGFIPAAYL 58
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYVS 522
VALYDY+A +D++SF + + + WW R G+ G P+NYV+
Sbjct: 7 VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 58
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY--CHGQYGLFPANYVS 522
T VALYDY++ + ++SF + + + + WW + GQ G P+NYV+
Sbjct: 87 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVA 140
>pdb|1E6H|A Chain A, A-Spectrin Sh3 Domain A11v, M25i, V44i, V58l Mutants
Length = 62
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
+ LYDYQ + E++ DI+T + ++ WW+ + + G PA Y+
Sbjct: 9 VLVLYDYQEKSPREVTIKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYL 58
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 37.7 bits (86), Expect = 0.014, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYVS 522
VALYDY+A +D++SF + + + WW R G+ G P+NYV+
Sbjct: 19 VALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 70
>pdb|2RMO|A Chain A, Solution Structure Of Alpha-Spectrin_sh3-Bergerac From
Chicken
Length = 70
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWR--------GYCHGQYGLFPANYV 521
+ALYDYQ + E++ DI+T + ++ WW+ G + + G PA YV
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANGKTYERQGFVPAAYV 66
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 463 DTEEDLGY----TAVALYDYQASADDEISFDPDDIITNIEM---IDEGWWRGYCHGQYGL 515
D E+ +G AL+DY A DE+SF + +T + + WW HGQ G
Sbjct: 144 DVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGY 203
Query: 516 FPANYVSL 523
P NY L
Sbjct: 204 VPRNYFGL 211
>pdb|1UGV|A Chain A, Solution Structure Of The Sh3 Domain Of Human
Olygophrein-1 Like Protein (Kiaa0621)
Length = 72
Score = 37.7 bits (86), Expect = 0.015, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDE-GWWRGYCHGQYGLFPANYVSL 523
A ALY +A D E+SF + N+ E GW G +G+ GL P NYV
Sbjct: 13 AKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEF 65
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYVS 522
VALYDY+A +D++SF + + + WW R G+ G P+NYV+
Sbjct: 9 VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 60
>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1PRM|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLP|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLQ|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1SRL|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
pdb|1SRM|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
Length = 64
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY--CHGQYGLFPANYVS 522
T VALYDY++ + ++SF + + + + WW + GQ G P+NYV+
Sbjct: 9 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYVA 62
>pdb|2ROT|A Chain A, Structure Of Chimeric Variant Of Sh3 Domain- Shh
Length = 70
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWR--------GYCHGQYGLFPANYV 521
+ALYDYQ + E++ DI+T + ++ WW+ G + + G PA YV
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYV 66
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYVS 522
VALYDY+A +D++SF + + + WW R G+ G P+NYV+
Sbjct: 8 VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 59
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY--CHGQYGLFPANYVS 522
T VALYDY++ + ++SF + + + + WW + GQ G P+NYV+
Sbjct: 5 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYVA 58
>pdb|1E7O|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V44i, V58l
Mutations
Length = 62
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
+ LYDYQ + E++ DI+T + ++ WW+ + + G PA Y+
Sbjct: 9 VLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYL 58
>pdb|2OAW|A Chain A, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|B Chain B, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|C Chain C, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|D Chain D, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
Length = 65
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWR--------GYCHGQYGLFPANYV 521
+ALYDYQ + E++ DI+T + ++ WW+ G + + G PA YV
Sbjct: 4 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYV 61
>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
Length = 57
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYVS 522
VALYDY+A +D++SF + + + WW R G+ G P+NYV+
Sbjct: 4 VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 55
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY--CHGQYGLFPANYVS 522
T VALYDY++ + ++SF + + + + WW + GQ G P+NYV+
Sbjct: 4 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVA 57
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY--CHGQYGLFPANYVS 522
T VALYDY++ + ++SF + + + + WW + GQ G P+NYV+
Sbjct: 4 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVA 57
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ 524
A AL+D+ D E+ F D+I ++ + WW G G FPA++V L+
Sbjct: 32 CAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLR 85
>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1SHF|B Chain B, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1ZBJ|A Chain A, Inferential Structure Determination Of The Fyn Sh3 Domain
Using Noesy Data From A 15n,H2 Enriched Protein
Length = 59
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYVS 522
VALYDY+A +D++SF + + + WW R G+ G P+NYV+
Sbjct: 5 VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 56
>pdb|1UE9|A Chain A, Solution Structure Of The Fourth Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 80
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 478 YQASADDEISFDPDDIITNIEMIDEGWWRGYCHG-----QYGLFPANYVSL 523
Y AS +++S P +I ++ GWW+G Q G FPA++V L
Sbjct: 16 YVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKL 66
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY--CHGQYGLFPANYVS 522
T VALYDY++ + ++SF + + + + WW + GQ G P+NYV+
Sbjct: 4 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVA 57
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYVS 522
VALYDY+A +D++SF + + + WW R G+ G P+NYV+
Sbjct: 5 VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 56
>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12
pdb|1QWF|A Chain A, C-Src Sh3 Domain Complexed With Ligand Vsl12
pdb|1NLO|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
pdb|1NLP|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
Length = 64
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY--CHGQYGLFPANYVS 522
T VALYDY++ + ++SF + + + + WW + GQ G P+NYV+
Sbjct: 9 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYVA 62
>pdb|1H8K|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V53i, V58l Mutant
Length = 62
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
+ LYDYQ + E++ DI+T + ++ WW+ + G PA Y+
Sbjct: 9 VLVLYDYQEKSPREVTVKKGDILTLLNSTNKDWWKVEVDDRQGFIPAAYL 58
>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex
pdb|4HXJ|B Chain B, Crystal Structure Of Sh3:rgt Complex
Length = 60
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY--CHGQYGLFPANYVS 522
T VALYDY++ + ++SF + + + + WW + GQ G P+NYV+
Sbjct: 4 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVA 57
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYVS 522
VALYDY+A +D++SF + + + WW R G+ G P+NYV+
Sbjct: 4 VALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 55
>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck
Sh3-Sh2-Linker Regulatory Region
Length = 193
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 459 GTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLF 516
G E ED+ VALYDY+A +++SF D + +E E WW R + G
Sbjct: 1 GIREAGSEDI--IVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYI 57
Query: 517 PANYVS 522
P+NYV+
Sbjct: 58 PSNYVA 63
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYV 521
VALYDY+A +++SF + I + WW R G+ G P+NYV
Sbjct: 31 VALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYV 81
>pdb|2DJQ|A Chain A, The Solution Structure Of The First Sh3 Domain Of Mouse
Sh3 Domain Containing Ring Finger 2
Length = 68
Score = 36.6 bits (83), Expect = 0.034, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
G A AL +Y+ ++ F+ D+I +DE W++G +G G+FPA+ V +
Sbjct: 7 GPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEV 61
>pdb|2HDA|A Chain A, Yes Sh3 Domain
Length = 64
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYVS 522
VALYDY+A +++SF + I + WW R G+ G P+NYV+
Sbjct: 9 VALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKNGYIPSNYVA 60
>pdb|2ECZ|A Chain A, Solution Structure Of The Sh3 Domain Of Sorbin And Sh3
Domain-Containing Protein 1
Length = 70
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHG--QYGLFPANYV 521
A+A +++ E+SF + IT + +DE W+ G G + G+FP YV
Sbjct: 10 AIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 61
>pdb|2OI3|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3
Domain Complexed With An Artificial High Affinity Ligand
(Pd1)
pdb|2OJ2|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3
Domain Complexed With An Artificial High Affinity Ligand
(Pd1)
Length = 86
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 459 GTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLF 516
G E ED+ VALYDY+A +++SF D + +E E WW R + G
Sbjct: 17 GIREAGSEDI--IVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYI 73
Query: 517 PANYVS 522
P+NYV+
Sbjct: 74 PSNYVA 79
>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
pdb|4D8D|C Chain C, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
Length = 58
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYVS 522
VALYDY+A +D++SF + + + WW R G+ G P+NYV+
Sbjct: 5 VALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 56
>pdb|4HCK|A Chain A, Human Hck Sh3 Domain, Nmr, 25 Structures
pdb|5HCK|A Chain A, Human Hck Sh3 Domain, Nmr, Minimized Average Structure
Length = 72
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 459 GTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLF 516
G E ED+ VALYDY+A +++SF D + +E E WW R + G
Sbjct: 1 GIREAGSEDI--IVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYI 57
Query: 517 PANYVS 522
P+NYV+
Sbjct: 58 PSNYVA 63
>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain
pdb|3FJ5|B Chain B, Crystal Structure Of The C-Src-Sh3 Domain
Length = 57
Score = 36.2 bits (82), Expect = 0.049, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY--CHGQYGLFPANYVS 522
T VALYDY++ + ++SF + + + + WW + G+ G P+NYV+
Sbjct: 2 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGRTGYIPSNYVA 55
>pdb|2YUP|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Vinexin
Length = 90
Score = 36.2 bits (82), Expect = 0.050, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYVSLQQ 525
AVA Y ++ + E+SF + I I ++E W+ G G+ G+FPA+YV + +
Sbjct: 20 AVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSR 75
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ 524
A AL+D+ D E+ F D+I + + WW G G FPA++V L+
Sbjct: 69 CAEALWDHVTXDDQELGFKAGDVIEVXDATNREWWWGRVADGEGWFPASFVRLR 122
>pdb|2CT3|A Chain A, Solution Structure Of The Sh3 Domain Of The Vinexin
Protein
Length = 70
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHG--QYGLFPANYVS 522
A+Y Y+ +DE+ D + ++ D+GW+ G ++G FP NYV+
Sbjct: 12 AMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVA 62
>pdb|2CSI|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Rim-
Binding Protein 2
Length = 76
Score = 35.8 bits (81), Expect = 0.066, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 469 GYTAVALYDY-------QASADDEISFDPDDIITNIEMIDE-GWWRGYCHGQYGLFPANY 520
G VALYDY + E++F DIIT IDE G++ G +GQ GL P+N+
Sbjct: 7 GRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNF 66
Query: 521 V 521
+
Sbjct: 67 L 67
>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|C Chain C, Crytal Structure Of Apc Complexed With Asef
Length = 116
Score = 35.4 bits (80), Expect = 0.071, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ 524
A AL+D+ D E+ F D+I ++ + WW G G FPA++V L+
Sbjct: 39 AEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLR 91
>pdb|2O2W|A Chain A, Extending Powder Diffraction To Proteins: Structure
Solution Of The Second Sh3 Domain From Ponsin
pdb|2O31|A Chain A, Crystal Structure Of The Second Sh3 Domain From Ponsin
pdb|2O9S|A Chain A, The Second Sh3 Domain From Ponsin
pdb|2O9V|A Chain A, The Second Sh3 Domain From Ponsin In Complex With The
Paxillin Proline Rich Region
Length = 67
Score = 35.4 bits (80), Expect = 0.085, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHG--QYGLFPANYVSL 523
A+A +++ E+SF + IT + +DE W+ G G + G+FP YV +
Sbjct: 9 AIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDV 62
>pdb|4AFZ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFZ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AG1|C Chain C, Human Chymase - Fynomer Complex
Length = 84
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYVS 522
VALYDY A+ ++SF + +E WW R G+ G P+NYV+
Sbjct: 10 VALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVA 61
>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
Domain Of P47phox
Length = 193
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
T A+ DY+ ++ E++ D++ +E + GWW + G PA+++
Sbjct: 13 TYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFL 63
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 461 NEDTEEDL-GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPAN 519
ED E + G VA+ Y A DE+S + + I + +GWW G FP+
Sbjct: 72 TEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSM 131
Query: 520 YV 521
Y+
Sbjct: 132 YL 133
>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
Length = 193
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
T A+ DY+ ++ E++ D++ +E + GWW + G PA+++
Sbjct: 13 TYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFL 63
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 461 NEDTEEDL-GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPAN 519
ED E + G VA+ Y A DE+S + + I + +GWW G FP+
Sbjct: 72 TEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSM 131
Query: 520 YV 521
Y+
Sbjct: 132 YL 133
>pdb|2KR3|A Chain A, Solution Structure Of Sha-D
Length = 70
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--------HGQYGLFPANYV 521
+ALYDYQ + E++ DI+T + ++ WW+ + + G PA YV
Sbjct: 9 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANDKTYERQGFVPAAYV 66
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYVS 522
VALYDY+A +++SF D + +E E WW R + G P+NYV+
Sbjct: 4 IVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVA 56
>pdb|3REB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 90
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYVS 522
VALYDY + + D++SF D + +E E WW R + G P+NYV+
Sbjct: 5 IVVALYDYVSWSPDDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVA 57
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYVS 522
VALYDY+A +++SF D + +E E WW R + G P+NYV+
Sbjct: 10 IVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVA 62
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 459 GTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH-GQYGLFP 517
N T ED LYD+ + +++ F +I+ IE +E WW G+ G+ P
Sbjct: 115 APNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIP 174
Query: 518 ANYV 521
YV
Sbjct: 175 VPYV 178
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 459 GTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH-GQYGLFP 517
N T ED LYD+ + +++ F +I+ IE +E WW G+ G+ P
Sbjct: 115 APNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIP 174
Query: 518 ANYV 521
YV
Sbjct: 175 VPYV 178
>pdb|1X43|A Chain A, Solution Structure Of The Sh3 Domain Of Endophilin B1
(Sh3g1b1)
Length = 81
Score = 33.5 bits (75), Expect = 0.28, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 459 GTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMI--DEGWWRGYCHGQYGLF 516
G N+ E A LYDY A+ E+S D++IT ++ D W G Q G
Sbjct: 7 GLNDLKESSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKV 66
Query: 517 PANYVSL 523
P Y+ L
Sbjct: 67 PITYLEL 73
>pdb|1BU1|A Chain A, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|B Chain B, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|E Chain E, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|C Chain C, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|D Chain D, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|F Chain F, Src Family Kinase Hck Sh3 Domain
Length = 57
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYVS 522
VALYDY+A +++SF D + +E E WW R + G P+NYV+
Sbjct: 2 IVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVA 54
>pdb|2DL8|A Chain A, Solution Structure Of The Sh3 Domain Of Human Slit-Robo
Rho Gtpase-Activating Protein 2
Length = 72
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ 524
A+A +DY E+SF + + + WW G +G GL P Y+ +Q
Sbjct: 12 AIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQ 64
>pdb|4AFQ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFQ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AFS|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|D Chain D, Human Chymase - Fynomer Complex
Length = 85
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEG-WW--RGYCHGQYGLFPANYVS 522
VALYDYQA ++SF + ++ G WW R G+ G P+NYV+
Sbjct: 10 VALYDYQADRWTDLSFHKGEKFQILDASPPGDWWEARSLTTGETGYIPSNYVA 62
>pdb|1CSK|A Chain A, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|B Chain B, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|C Chain C, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|D Chain D, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
Length = 71
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMI-DEGWWRGYCH-GQYGLFPANYV 521
G +A Y++ +A+ ++ F D++T + + D W++ G+ G+ PANYV
Sbjct: 11 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYV 65
>pdb|1GL5|A Chain A, Nmr Structure Of The Sh3 Domain From The Tec Protein
Tyrosine Kinase
Length = 67
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVS 522
VA+YD+QA+ ++ + +E D WWR +G G P+NYV+
Sbjct: 4 IVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVT 56
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMI-DEGWWRGYCH-GQYGLFPANYV 521
G +A Y++ +A+ ++ F D++T + + D W++ G+ G+ PANYV
Sbjct: 11 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYV 65
>pdb|1G2B|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant,
Cut At N47-D48
pdb|1TUD|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant,
Cut At N47-D48
Length = 62
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWR 506
+ALYDYQ + E++ DI+T + ++ WW+
Sbjct: 24 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWK 58
>pdb|2LX7|A Chain A, Solution Nmr Structure Of Sh3 Domain Of Growth
Arrest-Specific Protein 7 (Gas7) (Fragment 1-60) From
Homo Sapiens, Northeast Structural Genomics Consortium
(Nesg) Target Hr8574a
Length = 60
Score = 32.7 bits (73), Expect = 0.49, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 486 ISFDPDDIITNIEMIDEGWWRGYCH-GQYGLFPANYVSL 523
+ F ++IT +++ D GWW G G G FPA+YV L
Sbjct: 21 LRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQL 59
>pdb|3REA|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REA|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 61
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYVS 522
VALYDY + + D++SF D + +E E WW R + G P+NYV+
Sbjct: 5 IVVALYDYVSWSPDDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVA 57
>pdb|1JEG|A Chain A, Solution Structure Of The Sh3 Domain From C-Terminal Src
Kinase Complexed With A Peptide From The Tyrosine
Phosphatase Pep
Length = 83
Score = 32.7 bits (73), Expect = 0.54, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMI-DEGWWRGYCH-GQYGLFPANYVSLQQ 525
G +A Y++ +A+ ++ F D++T + + D W++ G+ G+ PANYV ++
Sbjct: 11 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE 69
>pdb|3CQT|A Chain A, N53i V55l Mutant Of Fyn Sh3 Domain
Length = 79
Score = 32.3 bits (72), Expect = 0.59, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYVS 522
ALYDY+A +D++SF + + + WW R G+ G P+ Y++
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLA 60
>pdb|2RQR|A Chain A, The Solution Structure Of Human Dock2 Sh3 Domain - Elmo1
Peptide Chimera Complex
Length = 119
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQY-GLFPANYVSLQQ 525
VA+Y++Q S ++S D++ E + W+RGY H G+FP +++ +++
Sbjct: 62 GVAIYNFQGSGAPQLSLQIGDVVRIQETCGD-WYRGYLIKHKMLQGIFPKSFIHIKE 117
>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex
Length = 138
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
A+ DY+ ++ E++ D++ +E + GWW + G PA+++
Sbjct: 15 AIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFL 62
>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex
pdb|1OV3|B Chain B, Structure Of The P22phox-P47phox Complex
Length = 138
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
Y A+A DY+ ++ E++ D++ +E + GWW + G PA+++
Sbjct: 14 YRAIA--DYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFL 63
>pdb|2GNC|A Chain A, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
pdb|2GNC|B Chain B, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
Length = 60
Score = 32.3 bits (72), Expect = 0.68, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
A+A +DY + E+SF + E WW G +G GL P Y+
Sbjct: 9 AIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYI 58
>pdb|1AWW|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42
Structures
pdb|1AWX|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, Minimized
Average Structure
Length = 67
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVS 522
VALYDY +++ D +E + WWR +GQ G P+NYV+
Sbjct: 11 VVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVT 62
>pdb|4AG2|C Chain C, Human Chymase - Fynomer Complex
pdb|4AG2|D Chain D, Human Chymase - Fynomer Complex
Length = 84
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYVS 522
VALYDY A+ ++SF + ++ WW R G+ G P+NYV+
Sbjct: 10 VALYDYNATRWTDLSFHKGEKFQILDGDSGDWWEARSLTTGETGYIPSNYVA 61
>pdb|2L2P|A Chain A, Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FROM NMR
RELAXATION Dispersion Experiments
pdb|2LP5|A Chain A, Native Structure Of The Fyn Sh3 A39vN53PV55L
Length = 66
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYVS 522
ALYDY+A +D++SF + + + WW R G+ G P+ Y++
Sbjct: 12 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEVRSLTTGETGYIPSPYLA 62
>pdb|1UHF|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human
Intersectin 2(Kiaa1256)
Length = 69
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
+ALY Y + +++F + I + D WW G + G+FP+NYV
Sbjct: 12 IALYPYSSVEPGDLTFTEGEEIL-VTQKDGEWWTGSIGDRSGIFPSNYV 59
>pdb|2VKN|A Chain A, Yeast Sho1 Sh3 Domain Complexed With A Peptide From Pbs2
Length = 70
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 465 EEDLGYTAVALY--DYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYV 521
+++ Y A ALY D EISF+ ++I+ + I+ WW+ +G+ G+ P+NYV
Sbjct: 1 DDNFIYKAKALYPYDADDDDAYEISFEQNEIL-QVSDIEGRWWKARRANGETGIIPSNYV 59
Query: 522 SL 523
L
Sbjct: 60 QL 61
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYV 521
AL+D+ + D+++ F DI+ + +E WW G+ G+ P YV
Sbjct: 6 ALFDFNGNDDEDLPFKKGDILKIRDKPEEQWWNAEDMDGKRGMIPVPYV 54
>pdb|4D8K|A Chain A, Crystal Structure Of A Sh3-Sh2 Domains Of A
Lymphocyte-Specific Protein Tyrosine Kinase (Lck) From
Homo Sapiens At 2.36 A Resolution
Length = 175
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG--YCHGQYGLFPANYVS 522
+AL+ Y+ S D ++ F+ + + +E E WW+ GQ G P N+V+
Sbjct: 15 VIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVA 66
>pdb|1H92|A Chain A, Sh3 Domain Of Human Lck Tyrosine Kinase
Length = 63
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG--YCHGQYGLFPANYVS 522
+AL+ Y+ S D ++ F+ + + +E E WW+ GQ G P N+V+
Sbjct: 8 LVIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVA 60
>pdb|2IIM|A Chain A, Sh3 Domain Of Human Lck
Length = 62
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG--YCHGQYGLFPANYVS 522
+AL+ Y+ S D ++ F+ + + +E E WW+ GQ G P N+V+
Sbjct: 8 LVIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVA 60
>pdb|1LCK|A Chain A, Sh3-Sh2 Domain Fragment Of Human P56-Lck Tyrosine Kinase
Complexed With The 10 Residue Synthetic Phosphotyrosyl
Peptide Tegqpyqpqpa
Length = 175
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG--YCHGQYGLFPANYVS 522
+AL+ Y+ S D ++ F+ + + +E E WW+ GQ G P N+V+
Sbjct: 15 VIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVA 66
>pdb|2EGA|A Chain A, Solution Structure Of The First Sh3 Domain From Human
Kiaa0418 Protein
Length = 70
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ 524
V + +Y+ + E+S +++ IE + GWW + G PA Y+ Q
Sbjct: 12 VVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQ 63
>pdb|1X2P|A Chain A, Solution Structure Of The Sh3 Domain Of The Protein
Arginine N-Methyltransferase 2
Length = 68
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
G VA+ DY A+ + ++SF + I + WW G G G PAN+V
Sbjct: 7 GEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHV 59
>pdb|3A98|A Chain A, Crystal Structure Of The Complex Of The Interacting
Regions Of Dock2 And Elmo1
pdb|3A98|C Chain C, Crystal Structure Of The Complex Of The Interacting
Regions Of Dock2 And Elmo1
Length = 184
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQY-GLFPANYVSLQQ 525
VA+Y++Q S ++S D++ I+ W+RGY H G+FP +++ +++
Sbjct: 21 VAIYNFQGSGAPQLSLQIGDVV-RIQETCGDWYRGYLIKHKXLQGIFPKSFIHIKE 75
>pdb|2DNU|A Chain A, Solution Structure Of Rsgi Ruh-061, A Sh3 Domain From
Human
Length = 71
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
V + Y + + DEI F+ + I EGWW G+ G PA+Y+
Sbjct: 12 VTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYL 60
>pdb|1KIK|A Chain A, Sh3 Domain Of Lymphocyte Specific Kinase (Lck)
Length = 57
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG--YCHGQYGLFPANYVS 522
+AL+ Y+ S D ++ F+ + + +E E WW+ GQ G P N+V+
Sbjct: 2 LVIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVA 54
>pdb|1WX6|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck2
Length = 91
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 475 LYDYQASADDEISFDPDDIITNIEMI--DEGWWR-GYCHGQYGLFPANYV 521
LY + + ++E++F+ + + IE D WW+ GQ GL P NYV
Sbjct: 23 LYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYV 72
>pdb|1QLY|A Chain A, Nmr Study Of The Sh3 Domain From Bruton's Tyrosine Kinase,
20 Structures
Length = 58
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVS 522
VALYDY +++ D +E + WWR +GQ G P+NYV+
Sbjct: 5 VALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVT 55
>pdb|1U5S|A Chain A, Nmr Structure Of The Complex Between Nck-2 Sh3 Domain And
Pinch-1 Lim4 Domain
Length = 71
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 475 LYDYQASADDEISFDPDDIITNIEMI--DEGWWR-GYCHGQYGLFPANYV 521
LY + + ++E++F+ + + IE D WW+ GQ GL P NYV
Sbjct: 12 LYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYV 61
>pdb|2I0N|A Chain A, Structure Of Dictyostelium Discoideum Myosin Vii Sh3
Domain With Adjacent Proline Rich Region
Length = 80
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDE--GWWRGYCHGQYGLFPANYVSL 523
A AL DY S + F +DIIT I D+ W+ G +G+ G FP ++V +
Sbjct: 13 ARALKDYNVSDTSLLPFKRNDIIT-ITFKDQENKWFMGQLNGKEGSFPVDHVEI 65
>pdb|2FRY|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Nck2
Adaptor Protein
Length = 61
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 475 LYDYQASADDEISFDPDDIITNIEMI--DEGWWR-GYCHGQYGLFPANYV 521
LY + + ++E++F+ + + IE D WW+ GQ GL P NYV
Sbjct: 8 LYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYV 57
>pdb|1X27|A Chain A, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|B Chain B, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|C Chain C, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|D Chain D, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|E Chain E, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|F Chain F, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
Length = 167
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRG--YCHGQYGLFPANYVS 522
+AL+ Y+ S D ++ F+ + + +E E WW+ GQ G P N+V+
Sbjct: 8 IALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVA 58
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEG---WWRGYCHGQYGLFPANYVSL 523
AL+DY+ DDE+ D +T I DE WW + + G P N + L
Sbjct: 175 ALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGL 227
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYV 521
AL+D+ + ++++ F DI+ + +E WW G+ G+ P YV
Sbjct: 139 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 187
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEG---WWRGYCHGQYGLFPANYVSL 523
AL+DY+ DDE+ D +T I DE WW + + G P N + L
Sbjct: 175 ALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGL 227
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYV 521
AL+D+ + ++++ F DI+ + +E WW G+ G+ P YV
Sbjct: 19 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 67
>pdb|2CUC|A Chain A, Solution Structure Of The Sh3 Domain Of The Mouse
Hypothetical Protein Sh3rf2
Length = 70
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYV 521
G VAL+ Y A +E+ + I + +GW +G G+ G+FP++YV
Sbjct: 7 GNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYV 61
>pdb|1UHC|A Chain A, Solution Structure Of Rsgi Ruh-002, A Sh3 Domain Of
Kiaa1010 Protein [homo Sapiens]
Length = 79
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEG----WWRGYCHGQYGLFPANYV 521
A+Y ++A +E+S + + +E D WW +G+ G P+NY+
Sbjct: 18 AVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYI 69
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYV 521
AL+D+ + ++++ F DI+ + +E WW G+ G+ P YV
Sbjct: 141 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 189
>pdb|3QWY|A Chain A, Ced-2
pdb|3QWY|B Chain B, Ced-2
Length = 308
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQQ 525
V + + + ++ F+ + + + ++ WW G GL PANYV +Q
Sbjct: 149 VVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQM 204
>pdb|1W1F|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase
pdb|1WA7|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase In Complex With A
Herpesviral Ligand
Length = 65
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 464 TEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG--YCHGQYGLFPANYV 521
+ E+ G VALY Y D++SF + + +E E WW+ + G P+NYV
Sbjct: 2 SPEEQGDIVVALYPYDGIHPDDLSFKKGEKMKVLEEHGE-WWKAKSLLTKKEGFIPSNYV 60
Query: 522 S 522
+
Sbjct: 61 A 61
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYV 521
AL+D+ + ++++ F DI+ + +E WW G+ G+ P YV
Sbjct: 139 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 187
>pdb|2E5K|A Chain A, Solution Structure Of Sh3 Domain In Suppressor Of T-Cell
Receptor Signaling 1
Length = 94
Score = 29.6 bits (65), Expect = 4.0, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEM----IDEGWWRG--YCHGQYGLFPANYVS 522
T +Y Y DDE+ P D I M EGW G G GL P NY++
Sbjct: 18 TLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYIT 75
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYV 521
AL+D+ + ++++ F DI+ + +E WW G+ G+ P YV
Sbjct: 8 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 56
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYV 521
AL+D+ + ++++ F DI+ + +E WW G+ G+ P YV
Sbjct: 8 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 56
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From Oncogene
Protein C-Crk
Length = 58
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYV 521
AL+D+ + ++++ F DI+ + +E WW G+ G+ P YV
Sbjct: 6 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 54
>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 58
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYV 521
GY AL+D+ + ++++ F DI+ + +E WW G+ G+ P YV
Sbjct: 2 GYVR-ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 54
>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated N-
Terminal Sh3 Domain From Oncogene Protein C-Crk
Length = 57
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYV 521
AL+D+ + ++++ F DI+ + +E WW G+ G+ P YV
Sbjct: 5 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 53
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
Length = 57
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYV 521
AL+D+ + ++++ F DI+ + +E WW G+ G+ P YV
Sbjct: 6 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 54
>pdb|3QWX|X Chain X, Ced-2 1-174
Length = 174
Score = 29.3 bits (64), Expect = 5.6, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQ 524
V + + + ++ F+ + + + ++ WW G GL PANYV +Q
Sbjct: 122 VGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQ 174
>pdb|3RBB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
pdb|3RBB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
Length = 61
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYVS 522
VALYDY + ++SF D + +E E WW R + G P+NYV+
Sbjct: 5 IVVALYDYYSPFSWDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVA 57
>pdb|2KYM|A Chain A, Solution Structure Of The Bem1p Sh3-Ci Domain From
L.Elongisporus In Complex With Ste20p Peptide
Length = 120
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC---HGQYGLFPANYVSL 523
AV LY+++A DDE+ P + ++ D W+ G GL P +YV +
Sbjct: 6 AVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRI 60
>pdb|2KGT|A Chain A, Solution Structure Of Sh3 Domain Of Ptk6
Length = 72
Score = 28.9 bits (63), Expect = 7.3, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 468 LGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWW 505
LG V L+D+++ D+E+SF D+ ++ +E WW
Sbjct: 9 LGPKYVGLWDFKSRTDEELSFRAGDVF-HVARKEEQWW 45
>pdb|1TUC|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant,
Cut At S19-P20
Length = 63
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 485 EISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
E++ DI+T + ++ WW+ + + G PA YV
Sbjct: 5 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 41
>pdb|2DBK|A Chain A, Solution Structures Of The Sh3 Domain Of Human Crk-Like
Protein
Length = 88
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 486 ISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
++ + DI+ M G W G +G+ GLFP +V +
Sbjct: 35 LALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKI 72
>pdb|2JMC|A Chain A, Chimer Between Spc-Sh3 And P41
Length = 77
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 485 EISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
E++ DI+T + ++ WW+ + + G PA YV
Sbjct: 7 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 43
>pdb|2CSQ|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Rim-
Binding Protein 2
Length = 97
Score = 28.5 bits (62), Expect = 9.4, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 459 GTNEDTEEDLGYTAVALYDYQA--------SADDEISFDPDDIITNIEMID-EGWWRGYC 509
GT+ EE VAL+DY +A++E+ F II D +G++RG
Sbjct: 7 GTDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGET 66
Query: 510 HGQYGLFPANYVS 522
+ GL P N VS
Sbjct: 67 CARLGLIPCNMVS 79
>pdb|2DLP|A Chain A, Solution Structure Of The Sh3 Domain Of Human Kiaa1783
Protein
Length = 85
Score = 28.5 bits (62), Expect = 9.6, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 473 VALYDYQASADDEISFDPDDIIT--NIEMIDEGWWRGYCHGQYGLFPANYV 521
+AL Y +SF D+I + ++ GW G G+ GLFPA+ V
Sbjct: 12 IALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIV 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.130 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,876,654
Number of Sequences: 62578
Number of extensions: 508705
Number of successful extensions: 1159
Number of sequences better than 100.0: 260
Number of HSP's better than 100.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 912
Number of HSP's gapped (non-prelim): 273
length of query: 525
length of database: 14,973,337
effective HSP length: 103
effective length of query: 422
effective length of database: 8,527,803
effective search space: 3598732866
effective search space used: 3598732866
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (25.4 bits)