RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy194
(525 letters)
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 110 bits (278), Expect = 7e-30
Identities = 53/68 (77%), Positives = 59/68 (86%)
Query: 458 QGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFP 517
GT ++ E DLG TAVALYDYQA+ DDEISFDPDDIITNIEMID+GWWRG C G+YGLFP
Sbjct: 6 SGTYDEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFP 65
Query: 518 ANYVSLQQ 525
ANYV L+Q
Sbjct: 66 ANYVELRQ 73
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 109 bits (275), Expect = 1e-29
Identities = 49/61 (80%), Positives = 54/61 (88%)
Query: 465 EEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ 524
DLG TA+ALYDYQA+ DDEISFDPDDIITNIEMID+GWWRG C G+YGLFPANYV L+
Sbjct: 5 SSDLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELR 64
Query: 525 Q 525
Q
Sbjct: 65 Q 65
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2;
STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 100 bits (252), Expect = 2e-26
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ 524
ALYD++A D+E++F ++IT ++ D WW+G H GLFP+N+V+
Sbjct: 5 ARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTTD 60
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein
2A, endophilin 1, EEN-B1, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 99.3 bits (248), Expect = 1e-25
Identities = 24/55 (43%), Positives = 30/55 (54%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
G ALYD++ + E+ F DIIT IDE W+ G HG G FP NYV +
Sbjct: 7 GPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEI 61
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 98.4 bits (246), Expect = 1e-25
Identities = 28/55 (50%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYVSL 523
A A YDY A+ D+E++F +D I NIE +D+ WW G G GLFP+NYVSL
Sbjct: 2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 56
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 98.9 bits (247), Expect = 1e-25
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 456 RQQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGL 515
+ + A+YD++A+ D+E++F +IIT ++ D WW+G H GL
Sbjct: 4 HHHHHSHMNHQHEARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGL 63
Query: 516 FPANYVSL 523
FP+N+V+
Sbjct: 64 FPSNFVTA 71
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 98.1 bits (245), Expect = 3e-25
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
G ALY ++ DE+ F+ DII +M D WW+G G+ GL P+NYV
Sbjct: 7 GKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 59
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 97.2 bits (243), Expect = 3e-25
Identities = 23/53 (43%), Positives = 28/53 (52%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
G ALYDY A DE++F D I + GWW G +G+ G PANYV
Sbjct: 3 GIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYV 55
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 97.2 bits (243), Expect = 4e-25
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
A ALYD++A +DE+ F +++ ++ + WW G H + GLFPANYV+
Sbjct: 4 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 55
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 97.2 bits (243), Expect = 4e-25
Identities = 25/51 (49%), Positives = 33/51 (64%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
A+ +DYQA DDE++ +IITNI D GWW G +G+ GLFP N+V
Sbjct: 3 EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFV 53
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 97.8 bits (244), Expect = 4e-25
Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
G A AL D++ DDE+ F +DIIT I DE W G +G G FPA +V +
Sbjct: 7 GRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEV 61
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 97.9 bits (244), Expect = 4e-25
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 459 GTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPA 518
G+ + ALYD++A D+E++F +II ++ D WW+G H GLFP+
Sbjct: 7 GSEIQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPS 66
Query: 519 NYVSLQQ 525
N+V+
Sbjct: 67 NFVTTNL 73
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 96.9 bits (242), Expect = 5e-25
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
G T VALY + ++++ P DIIT +E +E WW+G + G FPAN+V
Sbjct: 7 GNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFV 59
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide
COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Length = 64
Score = 96.5 bits (241), Expect = 8e-25
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYVSL 523
T A+YDY A +DE+SF D I N++ ID+GW G G+ G+ PANY+
Sbjct: 6 LRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEF 62
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 96.1 bits (240), Expect = 1e-24
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
G A A +D++A E+ DI+ + ID+ W+ G HG+ G+FP Y+
Sbjct: 7 GRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYI 59
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 95.8 bits (239), Expect = 1e-24
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
G A +++Q + +DE+SF D+I + + GWW G +G+ G FP+NYV
Sbjct: 4 GSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 56
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 95.7 bits (239), Expect = 1e-24
Identities = 25/51 (49%), Positives = 30/51 (58%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
ALY Y A DE+SF+ +DII I+ GWW G G+ GLFP NYV
Sbjct: 7 QCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYV 57
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 95.8 bits (239), Expect = 2e-24
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEM---IDEGWWRGYCHGQYGLFPANYVSL 523
G A ALYD DE++F DI+T +E EGWW+ HG+ GL PAN + +
Sbjct: 7 GLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQI 64
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 95.9 bits (239), Expect = 2e-24
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
G ALY +QA DDE++ + DI+ E +EGWW G +G+ G FPA YV
Sbjct: 7 GRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYV 59
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 94.9 bits (237), Expect = 2e-24
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
AL+D+ D E+ F D I ++ D WW+G CHGQ G+FP NYV+
Sbjct: 5 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTA 56
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 94.9 bits (237), Expect = 2e-24
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ 524
ALY ++ DE+ F+ DII +M D WW+G G+ GL P+NYV+ Q
Sbjct: 5 VFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ 58
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 95.0 bits (237), Expect = 2e-24
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
G A AL +Y+ ++ F+ D+I +DE W++G +G G+FPA+ V
Sbjct: 7 GPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSV 59
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 95.0 bits (237), Expect = 3e-24
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
+ ALYD++ D E+ F D+IT IDE W+ G HGQ G FP +YV
Sbjct: 15 SCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYV 65
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 95.1 bits (237), Expect = 4e-24
Identities = 24/51 (47%), Positives = 31/51 (60%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
VA+YDY +DE+SF II I+ D+GW+ G +G GLFP NYV
Sbjct: 19 KVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYV 69
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85,
PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 94.2 bits (235), Expect = 5e-24
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
A +++Q + +DE+SF D+I + + GWW G +G+ G FP+NYV
Sbjct: 8 VVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 93.9 bits (234), Expect = 7e-24
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQY-GLFPANYV 521
G T ALYDY+A DE++F +I N+ GWW+G + FP+NYV
Sbjct: 7 GRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYV 60
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 93.9 bits (234), Expect = 7e-24
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 465 EEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG-YCHGQYGLFPANYVSL 523
+ D T VALYDY A+ DE++ DII +E WW G GQ G FPAN+V+
Sbjct: 2 QVDTAPTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVAS 61
Query: 524 QQ 525
+
Sbjct: 62 ET 63
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 94.5 bits (235), Expect = 7e-24
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 458 QGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFP 517
G + DL A ++Y A +DE+S + +E +GWWRG +GQ G FP
Sbjct: 6 SGDPGERLYDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFP 65
Query: 518 ANYV 521
+NYV
Sbjct: 66 SNYV 69
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 93.4 bits (233), Expect = 8e-24
Identities = 27/57 (47%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDE-GWWRGYCH-GQYGLFPANYVSL 523
G ALYDY DE+SF D +T + DE GW RG GQ GL+PANYV
Sbjct: 3 GVRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEA 59
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 93.4 bits (233), Expect = 8e-24
Identities = 27/52 (51%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDE-GWWRGYCHGQYGLFPANYV 521
A+Y Y+A DDEIS DP DIIT I D GW G C G GLFP +Y
Sbjct: 2 AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYC 53
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 93.5 bits (233), Expect = 9e-24
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
L++Y +DE+ DII E ++EGWW G + + GLFP+N+V
Sbjct: 10 CKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFV 59
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 93.0 bits (232), Expect = 1e-23
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
A+A +DY + E+SF + E WW G +G GL P Y+ +
Sbjct: 8 FAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIVV 60
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 72
Score = 93.5 bits (233), Expect = 1e-23
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDE-GWWRGYCHGQYGLFPANYV 521
A ALY +A D E+SF + N+ E GW G +G+ GL P NYV
Sbjct: 10 FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYV 63
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 68
Score = 93.5 bits (233), Expect = 1e-23
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
G + Y DDE+ DII + ++EGWW G +G+ G+FP+N++
Sbjct: 7 GRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFI 59
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 93.0 bits (232), Expect = 1e-23
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
ALY + D ++ P D + +E + W++G C+G+ G+FPANYV
Sbjct: 4 YVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYV 54
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 93.1 bits (232), Expect = 1e-23
Identities = 22/51 (43%), Positives = 27/51 (52%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
LYD++ E+ F DIIT IDE W+ G HG+ G FP NYV
Sbjct: 5 CCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYV 55
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB:
1ywp_A 1ywo_A
Length = 61
Score = 92.7 bits (231), Expect = 2e-23
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGL-FPANYV 521
AL+DY+A +DE++F II N+E D GWWRG G+ L FP+NYV
Sbjct: 5 AVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYV 56
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 92.2 bits (230), Expect = 2e-23
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDE--GWWRGYCHGQYGLFPANYVSL 523
AVALY + ++ F D+IT ++ D WW G +G+ G+FPANYV L
Sbjct: 5 KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVEL 59
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 93.1 bits (232), Expect = 2e-23
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 452 MEELRQQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHG 511
M + + A AL+D+ ++ E++F D+I + I++ W G G
Sbjct: 1 MNHKVHHHHHHHMDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRG 60
Query: 512 QYGLFPANYV 521
G+FP ++V
Sbjct: 61 ATGIFPLSFV 70
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 92.3 bits (230), Expect = 3e-23
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDE-GWWRGYCHGQYGLFPANYV 521
+ YDY A DDE++ +II N++ + E GW G +G+ G+FP N+V
Sbjct: 3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFV 54
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 93.2 bits (232), Expect = 3e-23
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
+A+YDY A+ +DE+SF +I + D WW+G +G GLFP+NYV +
Sbjct: 36 QVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKM 88
Score = 26.6 bits (59), Expect = 8.6
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 511 GQYGLFPANYVSL 523
GQ G FPA++V L
Sbjct: 7 GQKGWFPASHVKL 19
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 81
Score = 92.5 bits (230), Expect = 3e-23
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 459 GTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEM--IDEGWWRGYCHGQYGLF 516
G N+ E A LYDY A+ E+S D++IT + +D W G Q G
Sbjct: 7 GLNDLKESSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKV 66
Query: 517 PANYVSL 523
P Y+ L
Sbjct: 67 PITYLEL 73
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 92.0 bits (229), Expect = 3e-23
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ 525
AVA + Y E+SF D++ E WWRG +G GL P Y++L
Sbjct: 12 EAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPA 66
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 91.5 bits (228), Expect = 5e-23
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
A +D+QA + E++ DI+ + +D+ W G HG+ G+FPANYV
Sbjct: 3 AARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYV 53
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 91.0 bits (227), Expect = 6e-23
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
A AL+D+ ++ E++F D+I + I++ W G G G+FP ++V
Sbjct: 7 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFV 56
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 91.2 bits (227), Expect = 7e-23
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ 525
G VA+ DY A+ + ++SF + I + WW G G G PAN+V
Sbjct: 7 GEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKHS 63
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 90.8 bits (226), Expect = 8e-23
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 459 GTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPA 518
G++ + E + A+A +DY E+SF + + + WW G +G GL P
Sbjct: 1 GSSGSSGEPI--EAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPH 58
Query: 519 NYVSLQQ 525
Y+ +Q
Sbjct: 59 QYIVVQD 65
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 90.8 bits (226), Expect = 8e-23
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
ALYDY A DE+ DI+ I ++GWW +GQ G P +Y+
Sbjct: 10 EYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYL 60
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 90.8 bits (226), Expect = 9e-23
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGL-FPANYV 521
AL+DY+A +DE++F II N+E + GWWRG G+ L FP+NYV
Sbjct: 8 AVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYV 59
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 90.0 bits (224), Expect = 1e-22
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
L++Y +DE+ DII E ++EGWW G + + GLFP+N+V
Sbjct: 4 CKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFV 53
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane,
nuclear protein, phosphorylation, polymorphism,
transport, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 90.0 bits (224), Expect = 2e-22
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHG--QYGLFPANYV 521
G A+A +++ E+SF + IT + +DE W+ G G + G+FP YV
Sbjct: 7 GGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 61
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 90.0 bits (224), Expect = 2e-22
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYV 521
G A+Y Y+ +DE+ D + ++ D+GW+ G ++G FP NYV
Sbjct: 7 GTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYV 61
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 90.5 bits (225), Expect = 2e-22
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
+A A++D+ A+ E++F D+I ++ ++ WW G + G FPA++V L
Sbjct: 12 SAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRL 64
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 89.6 bits (223), Expect = 2e-22
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNI--EMIDEGWWRGYCHGQYGLFPANYVSL 523
G ++ Y+A DDE++ DI+T I + ID GWW G +G+ G+FP N+V L
Sbjct: 7 GDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 63
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 89.2 bits (222), Expect = 3e-22
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
G L+ + +E+ P +I+ ++ ++ W +GQ GL P NY+
Sbjct: 7 GEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYL 59
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 89.3 bits (222), Expect = 4e-22
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
A AL + A D+ ++F DIIT +E E WW G HG G FP +YV +
Sbjct: 10 NLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKI 63
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 89.3 bits (222), Expect = 4e-22
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
A ++++ + +DE+S DII + + GWW G +G+ G FP+NYV
Sbjct: 12 IVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYV 62
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 88.9 bits (221), Expect = 4e-22
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMI--DEGWWRGYCHGQYGLFPANYV 521
G TAVA Y++ A E+S D++ I D+GWW+G +G+ G FP+ YV
Sbjct: 7 GGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYV 61
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 89.4 bits (222), Expect = 6e-22
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYVSLQQ 525
AVA Y ++ + E+SF + I I ++E W+ G G+ G+FPA+YV + +
Sbjct: 19 EAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSR 75
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 88.0 bits (219), Expect = 7e-22
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
G AL+ Y+A+ +++ F DII + ++E W G G+ G+FP +V
Sbjct: 5 GSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFV 57
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 88.2 bits (219), Expect = 1e-21
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 459 GTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDE--GWWRGYCHGQYGLF 516
G + ALY ++ +++F D IT I D WW G GQ G+F
Sbjct: 7 GHERVGNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIF 66
Query: 517 PANYVSLQQ 525
PANYV++
Sbjct: 67 PANYVTMNS 75
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 86.8 bits (216), Expect = 2e-21
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
AL+D+ E++F D+IT I D WW G + + G+FP+NYV
Sbjct: 5 VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 86.5 bits (215), Expect = 3e-21
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHG--QYGLFPANYV 521
A+A +++ E+SF + IT + +DE W+ G G + G+FP YV
Sbjct: 9 AIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 60
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 86.2 bits (214), Expect = 4e-21
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEM-IDEGWWRGYCHGQYGLFPANYVSLQ 524
A+A YD++A+ADDE+SF DI+ + D+ W++ +G+ G P NY+ ++
Sbjct: 9 SMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMK 65
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 86.2 bits (214), Expect = 4e-21
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIE---MIDEGWWRGYCHGQYGLFPANYV 521
ALYDY+ DDE+SF II + D+G+W G +G+ G+FP+ V
Sbjct: 10 FVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLV 63
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A
{Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A
2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A
2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Length = 62
Score = 85.4 bits (212), Expect = 6e-21
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 465 EEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
+E + LYDYQ + E++ DI+T + ++ WW+ +G+ G PA Y+
Sbjct: 2 DETGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYL 58
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 85.1 bits (211), Expect = 8e-21
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 468 LGYTAVALYDYQASADDEISFDPDDIITNIEMIDE---GWWRGYCHGQYGLFPANYVSL 523
L A ALYD A + DE+SF DI+T +E + GWW HG+ G+ P N + +
Sbjct: 2 LNVLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKI 60
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 89
Score = 85.7 bits (212), Expect = 9e-21
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMI-----DEGWWRGYCH-GQYGLFPANYVS 522
G A++DY+A+ D+E++ D + + DEGWW G G+ G+FP+NYV+
Sbjct: 29 GPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVA 88
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 84.7 bits (210), Expect = 2e-20
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDE-GWWRGYCHGQYGLFPANYV 521
A AL DY S + F +DIIT E W+ G +G+ G FP ++V
Sbjct: 12 YARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHV 63
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 85
Score = 84.8 bits (210), Expect = 2e-20
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 472 AVALYDYQASADDEISFDPDDIIT--NIEMIDEGWWRGYCHGQYGLFPANYV 521
+AL Y +SF D+I + ++ GW G G+ GLFPA+ V
Sbjct: 11 VIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIV 62
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 84.1 bits (209), Expect = 2e-20
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY--CHGQYGLFPANYVSLQQ 525
G AVALYD++ D+E+ DI+ +GW + GL P +VS Q
Sbjct: 1 GQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQ 59
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 85.2 bits (211), Expect = 2e-20
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMI--DEGWWRGYCHGQYGLFPANYV 521
ALY ++A DE+SF+ DII E + GW G G +G FP NYV
Sbjct: 7 GYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYV 59
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 84.3 bits (209), Expect = 2e-20
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQY---GLFPANYVSL 523
+YD QA DDE++F ++I D+ WW G+ GQ G+FP ++V +
Sbjct: 13 VKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHI 67
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 83.9 bits (208), Expect = 2e-20
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 464 TEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHG-----QYGLFPA 518
+E ++ + VA + Y++ +D+++F+ D I + D W+ G G+FP
Sbjct: 2 SEPEVPFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPK 61
Query: 519 NYVSLQ 524
++V++Q
Sbjct: 62 SFVAVQ 67
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 84.4 bits (209), Expect = 3e-20
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 456 RQQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGL 515
+Q GTN+ E + Y DDE+ DII + ++EGWW G +G+ G+
Sbjct: 6 QQMGTNKRGERRRRR-CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGM 64
Query: 516 FPANYV 521
FP+N++
Sbjct: 65 FPSNFI 70
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 83.6 bits (207), Expect = 5e-20
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 458 QGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFP 517
+ ++E +ALYDYQ + E++ DI+T + ++ WW+ + + G P
Sbjct: 6 HHHHHGSDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVP 65
Query: 518 ANYV 521
A YV
Sbjct: 66 AAYV 69
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein;
2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 83.1 bits (206), Expect = 5e-20
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNI--EMIDEGWWRGYCHGQYGLFPANYV 521
++ Y+A DDE++ DI+T I + ID GWW G +G+ G+FP N+V
Sbjct: 4 YCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 56
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 83.1 bits (206), Expect = 5e-20
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
+ALYDYQ + E++ DI+T + ++ WW+ + + G PA YV
Sbjct: 7 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 57
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 82.8 bits (205), Expect = 6e-20
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNI--EMIDEGWWRGYCHGQYGLFPANYVSL 523
++ Y+A DDE++ DI+T I + ID GWW G +G+ G+FP N+V L
Sbjct: 11 YCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 65
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 82.3 bits (204), Expect = 8e-20
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNI--EMIDEGWWRGYCHGQYGLFPANYV 521
L+ Y + +DE++F +II I E + GWW+G +G+ G+FP N+
Sbjct: 8 YCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFA 60
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 81.9 bits (203), Expect = 1e-19
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYV 521
G VAL+ Y A +E+ + I + +GW +G G+ G+FP++YV
Sbjct: 7 GNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYV 61
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 81.5 bits (202), Expect = 2e-19
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
G +ALY Y + +++F + I + D WW G + G+FP+NYV
Sbjct: 8 GEEYIALYPYSSVEPGDLTFTEGEEILVTQ-KDGEWWTGSIGDRSGIFPSNYV 59
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 81.7 bits (202), Expect = 2e-19
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 469 GYTAVALYDYQAS-------ADDEISFDPDDIITNIEMIDE-GWWRGYCHGQYGLFPANY 520
G VALYDY + E++F DIIT IDE G++ G +GQ GL P+N+
Sbjct: 7 GRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNF 66
Query: 521 V 521
+
Sbjct: 67 L 67
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 81.0 bits (200), Expect = 2e-19
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
A + Y A +DE+S +T +E +GWWRG +GQ G FP+NYV
Sbjct: 3 PAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYV 53
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 80.7 bits (200), Expect = 2e-19
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG-YCHGQYGLFPANYV 521
AL+D+ + ++++ F DI+ + +E WW G+ G+ P YV
Sbjct: 1 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 54
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 81.3 bits (201), Expect = 3e-19
Identities = 12/52 (23%), Positives = 17/52 (32%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
+ D + DII I G W G + + G F YV +
Sbjct: 14 VHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDV 65
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 80.4 bits (199), Expect = 4e-19
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
V + Y + + DEI F+ + I EGWW G+ G PA+Y+
Sbjct: 10 KYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYL 60
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 80.5 bits (199), Expect = 4e-19
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
+ALYDYQ + E++ DI+T + ++ WW+ + + G PA YV
Sbjct: 5 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 54
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 80.0 bits (198), Expect = 5e-19
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG-YCHGQYGLFPANYV 521
AL+D+ + ++++ F DI+ + +E WW G+ G+ P YV
Sbjct: 6 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 56
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 79.6 bits (197), Expect = 9e-19
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
V + +Y+ + E+S +++ IE + GWW + G PA Y+
Sbjct: 10 QYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYL 60
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 79.1 bits (196), Expect = 9e-19
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWW---RGYCHGQYGLFPANYVSL 523
G LY Y DDEI+ P D I+ + W G+ GL P Y+ +
Sbjct: 1 GMENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI 58
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 79.3 bits (196), Expect = 1e-18
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG--YCHGQYGLFPANYV 521
VALYDY+A +D++SF + + + WW G+ G P+NYV
Sbjct: 17 LFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 69
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A
{Saccharomyces cerevisiae}
Length = 70
Score = 78.9 bits (195), Expect = 2e-18
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 465 EEDLGYTAVALYDYQASADD--EISFDPDDIITNIEMIDEGWWRGYC-HGQYGLFPANYV 521
+++ Y A ALY Y A DD EISF+ ++I+ + I+ WW+ +G+ G+ P+NYV
Sbjct: 1 DDNFIYKAKALYPYDADDDDAYEISFEQNEILQ-VSDIEGRWWKARRANGETGIIPSNYV 59
Query: 522 SL 523
L
Sbjct: 60 QL 61
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 77
Score = 78.9 bits (195), Expect = 2e-18
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 464 TEEDLGYTAVALYDYQASA-DDEISFDPDDIITNIEM-IDEGWWRGY-CHGQYGLFPANY 520
+ A +YD+ A ++E++ +IIT + GW G G+ GL P +Y
Sbjct: 4 GSSGMATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDY 63
Query: 521 V 521
V
Sbjct: 64 V 64
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 78.3 bits (193), Expect = 4e-18
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 464 TEEDLGYTAVALYDYQASADDEISFDPDDIIT----NIEMIDEGWWRGYCHGQY-GLFPA 518
+ ED A A YD+ A +D+EISF D++ + GW GQ GL PA
Sbjct: 12 SGEDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPA 71
Query: 519 NYVSL 523
NYV +
Sbjct: 72 NYVKI 76
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 77.7 bits (192), Expect = 4e-18
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYV 521
T A++ + +DE+ + DD + ++ W+ Y G G+FPA Y
Sbjct: 8 THRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYA 60
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 77.3 bits (191), Expect = 5e-18
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 469 GYTAVALYDYQASAD-DEISFDPDDIITNIEMIDEGWWRG--YCHGQYGLFPANYV 521
G A+ Y D DEISF D+ +++GW + GL + V
Sbjct: 7 GRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLV 62
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 77.5 bits (191), Expect = 6e-18
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHG-----QYGLFPANYVSL 523
A Y AS +++S P +I ++ GWW+G Q G FPA++V L
Sbjct: 9 IAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKL 66
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 76.8 bits (190), Expect = 6e-18
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYV 521
T A++ + +DE+ + DD + ++ W+ Y G G+FPA Y
Sbjct: 5 THRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYA 57
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 77.0 bits (190), Expect = 8e-18
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG--YCHGQYGLFPANYVSL 523
AVALYD++ D+E+ DI+ +GW + GL P +VS
Sbjct: 8 AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSY 61
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling
protein; NMR {Homo sapiens}
Length = 67
Score = 76.6 bits (189), Expect = 9e-18
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 472 AVALYDYQASA--DDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
A + +A ++ + +++ ++ G W G C+G+ G FP +V L
Sbjct: 9 ARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRL 62
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 88
Score = 77.1 bits (190), Expect = 1e-17
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
A+ A ++ + DI+ M G W G +G+ GLFP +V +
Sbjct: 21 AIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKI 72
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 76.1 bits (187), Expect = 2e-17
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 472 AVALYDYQASAD-DEISFDPDDIITNIEMIDEGWWRGYCHG------QYGLFPANYVSL 523
AL D+ D ++ D+IT +E +G W+G+ H + G FP V +
Sbjct: 21 VRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEV 79
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 75.1 bits (185), Expect = 3e-17
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
A+ A ++ + DI+ M G W G +G+ GLFP +V +
Sbjct: 6 AIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKI 57
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 74.8 bits (184), Expect = 6e-17
Identities = 15/63 (23%), Positives = 25/63 (39%)
Query: 463 DTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
+ + + YQ D EISF + +E + GWW G P++Y+
Sbjct: 2 SSGSSGATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLV 61
Query: 523 LQQ 525
L +
Sbjct: 62 LDE 64
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 74.1 bits (182), Expect = 2e-16
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 471 TAVALYDYQASADDEISFDPDDIIT----NIEMIDEGWWRGYCH--GQYGLFPANYV 521
T +Y Y DDE+ P D I EGW G G GL P NY+
Sbjct: 18 TLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYI 74
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 73.2 bits (180), Expect = 2e-16
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
A L Y A E++ DI+T + ++ WW+ + + G PA YV
Sbjct: 3 APPLPPYSAG-GREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 51
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 73.7 bits (181), Expect = 2e-16
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 459 GTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMI--DEGWWRG-YCHGQYGL 515
G + + + LY + + ++E++F+ + + IE D WW+ GQ GL
Sbjct: 7 GLSNGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGL 66
Query: 516 FPANYVSLQQ 525
P NYV +
Sbjct: 67 VPKNYVVVLS 76
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 72.8 bits (179), Expect = 2e-16
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 462 EDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMID----EGWWRGYCHGQYGLFP 517
+E + A+Y ++A +E+S + + +E D WW +G+ G P
Sbjct: 6 SGSEAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVP 65
Query: 518 ANYV 521
+NY+
Sbjct: 66 SNYI 69
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein;
SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 68
Score = 72.7 bits (179), Expect = 2e-16
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
G LYD+ A +E+S D+++ +E + W GQ G P N +
Sbjct: 7 GKYVKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNIL 59
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 72.8 bits (179), Expect = 3e-16
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 8/59 (13%)
Query: 471 TAVALYDYQAS-------ADDEISFDPDDIITNIEMIDE-GWWRGYCHGQYGLFPANYV 521
+A DY ++ D++ +D+ G++ G G GL PA+ +
Sbjct: 9 IMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLL 67
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 72.3 bits (178), Expect = 3e-16
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 461 NEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG-YCHGQYGLFPAN 519
+E + G +A+ D+ A +++F +I+ IE +GWW G GL P
Sbjct: 2 SESHKWSTGEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRT 61
Query: 520 YV 521
Y+
Sbjct: 62 YL 63
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 74.7 bits (183), Expect = 3e-16
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEM-IDEGWWRGYCHGQYGLFPANYVS 522
TA A YD+ A E+S DII + +GWWRG +G+ G FP+NYV
Sbjct: 7 TAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVE 59
Score = 27.7 bits (61), Expect = 5.6
Identities = 7/32 (21%), Positives = 9/32 (28%), Gaps = 1/32 (3%)
Query: 472 AVALYDYQASADDEISF-DPDDIITNIEMIDE 502
Y D E ++ D T E E
Sbjct: 105 VFKQYANDNGVDGEWTYDDATKTFTVTEHSLE 136
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 72.3 bits (178), Expect = 3e-16
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC-HGQYGLFPANYV 521
VALYDY +++ D +E + WWR +GQ G P+NYV
Sbjct: 8 LKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYV 61
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 72.8 bits (179), Expect = 3e-16
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRG--YCHGQYGLFPANYV 521
VALYDY A+ ++SF + +E WW G+ G P+NYV
Sbjct: 10 VALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYV 60
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 71.9 bits (177), Expect = 4e-16
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMID-EGWWRGY-CHGQYGLFPANYVSLQQ 525
G VA+Y ++ S++ IS + ++ +E +GW R G G P +Y+ +
Sbjct: 7 GGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRVTS 65
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 73.0 bits (179), Expect = 4e-16
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Query: 456 RQQGTNEDTEEDLGYTAVALYDYQA--------SADDEISFDPDDIITNIEMIDE-GWWR 506
GT+ EE VAL+DY +A++E+ F II D G++R
Sbjct: 4 GSSGTDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYR 63
Query: 507 GYCHGQYGLFPANYV 521
G + GL P N V
Sbjct: 64 GETCARLGLIPCNMV 78
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 71.6 bits (176), Expect = 5e-16
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWR--------GYCHGQYGLFPANYV 521
+ALYDYQ + E++ DI+T + ++ WW+ G + + G PA YV
Sbjct: 4 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYV 61
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 71.5 bits (176), Expect = 5e-16
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 470 YTAVALYDYQASADDEISFDPDDIITNIEMI--DEGWWRG-YCHGQYGLFPANYVSLQQ 525
+ LY + + ++E++F+ + + IE D WW+ GQ GL P NYV +
Sbjct: 7 HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLS 65
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 71.1 bits (175), Expect = 7e-16
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC-HGQYGLFPANYVSLQQ 525
VA+YD+QA+ ++ + +E D WWR +G G P+NYV+ ++
Sbjct: 4 IVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKK 59
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 75.0 bits (184), Expect = 8e-16
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
T A+ DY+ ++ E++ D++ +E + GWW + G PA+++
Sbjct: 13 TYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFL 63
Score = 74.3 bits (182), Expect = 1e-15
Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 2/103 (1%)
Query: 421 EENQKLLLKKQQEEDRLKAEEQAR--LLEQERLMEELRQQGTNEDTEEDLGYTAVALYDY 478
+ + ++ E + +A+ + L T + G VA+ Y
Sbjct: 31 STGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETEDPEPNYAGEPYVAIKAY 90
Query: 479 QASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
A DE+S + + I + +GWW G FP+ Y+
Sbjct: 91 TAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYL 133
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 70.7 bits (174), Expect = 9e-16
Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 471 TAVALYDYQASAD-DEISFDPDDIITNIEMIDEGWWRG--YCHGQYGLFPANYV 521
A YD+ S E+ D+I GW G + G P Y+
Sbjct: 2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYM 55
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 78
Score = 71.2 bits (175), Expect = 1e-15
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 463 DTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMID-EGWWRG-YCHGQYGLFPANY 520
T + T +Y Y+AS DE++ + +++ IE D E W + GQ G P Y
Sbjct: 7 GTLRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKY 66
Query: 521 V 521
+
Sbjct: 67 L 67
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 70.8 bits (174), Expect = 1e-15
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 457 QQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG--YCHGQYG 514
G + + + A DE++ D++ ++ ++GW G G+ G
Sbjct: 5 SSGWQGLSSKGDLPQVEITKAFFAKQADEVTLQQADVVLVLQ-QEDGWLYGERLRDGETG 63
Query: 515 LFPANYV 521
FP ++
Sbjct: 64 WFPEDFA 70
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
protein-protein interaction, structural genomics; NMR
{Homo sapiens}
Length = 68
Score = 70.4 bits (173), Expect = 1e-15
Identities = 10/53 (18%), Positives = 22/53 (41%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
G LY+++A E++ + + ++ W G+ G P+N +
Sbjct: 7 GLKMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNIL 59
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 70.5 bits (173), Expect = 1e-15
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG---------YCHGQYGLFPAN 519
G VAL+DYQA +++SF D + ++ EGWW G P+N
Sbjct: 7 GQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSN 66
Query: 520 YV 521
YV
Sbjct: 67 YV 68
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 70.4 bits (173), Expect = 2e-15
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMI-DEGWWRG-YCHGQYGLFPANYVSLQQ 525
G +A Y++ +A+ ++ F D++T + + D W++ G+ G+ PANYV ++
Sbjct: 11 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE 69
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 70.1 bits (172), Expect = 2e-15
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 472 AVALYDYQASAD-DEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYV 521
A+ Y D DEISF D+ +++GW + GL + V
Sbjct: 8 VRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLV 60
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 70.0 bits (172), Expect = 2e-15
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 469 GYTAVALYDYQAS-ADDEISFDPDDIIT-NIEMIDEGWWRGYCH--GQYGLFPANYV 521
A++ + A +SF D+IT + +GW G G FP +Y
Sbjct: 7 RMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYT 63
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 71.7 bits (175), Expect = 2e-15
Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 15/80 (18%)
Query: 457 QQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIIT-----NIEMIDEGWWRGY--- 508
D + A +DY A+ DE+ D++ N E DEGW G
Sbjct: 32 TTTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKES 91
Query: 509 -------CHGQYGLFPANYV 521
G+FP N+
Sbjct: 92 DWNQHKELEKCRGVFPENFT 111
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 76.2 bits (186), Expect = 2e-15
Identities = 12/77 (15%), Positives = 26/77 (33%)
Query: 447 EQERLMEELRQQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWR 506
E + + + A ++ + +++ ++ G W
Sbjct: 217 EPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWE 276
Query: 507 GYCHGQYGLFPANYVSL 523
G C+G+ G FP +V L
Sbjct: 277 GECNGKRGHFPFTHVRL 293
Score = 58.4 bits (140), Expect = 2e-09
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 476 YDYQASADDEISFDPDDIITNIEMIDEGWWRG-YCHGQYGLFPANYV 521
+D+ + ++++ F DI+ + +E WW G+ G+ P YV
Sbjct: 141 FDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 187
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 69.7 bits (171), Expect = 3e-15
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRG--YCHGQYGLFPANYV 521
ALYDY+A +D++SF + + + WW G+ G P+ Y+
Sbjct: 9 EALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYL 59
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 70.6 bits (173), Expect = 4e-15
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH---GQYGLFPANYVSL 523
A+ LYD++A DE++ + + + W+ G GL P +VS+
Sbjct: 8 AIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSI 62
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 70.7 bits (173), Expect = 4e-15
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH---GQYGLFPANYVSLQ 524
AV LY+++A DDE+ P + ++ D W+ G GL P +YV +
Sbjct: 6 AVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRII 61
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 68.0 bits (167), Expect = 8e-15
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 472 AVALYDYQASADDEISFDPDDIITNI-EMIDEGWWRGYCH--GQYGLFPANYV 521
+ YD+ A + DE++ D + + + + WW G+ GL PA ++
Sbjct: 5 GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFI 57
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 67.8 bits (166), Expect = 1e-14
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 472 AVALYDYQAS-ADDEISFDPDDIITNIEMID-----EGWWRGYC-HGQYGLFPANYVSL 523
A ALYD+ + E++ D++ + D WW+ +G G P NY+ +
Sbjct: 10 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 68
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 67.8 bits (166), Expect = 1e-14
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 465 EEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWW-----RGYCHGQYGLFPAN 519
+ LG V L+D+++ D+E+SF D+ ++ WW G P N
Sbjct: 6 QAHLGPKYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHN 65
Query: 520 YVSLQQ 525
Y++ ++
Sbjct: 66 YLAERE 71
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 67.8 bits (166), Expect = 1e-14
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMI-DEGWWRGYCH--GQYGLFPANYV 521
G + ++ E++F D++T +E ++ W+R H GQ GL A +
Sbjct: 17 GTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGAL 72
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 69.0 bits (169), Expect = 1e-14
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRG--YCHGQYGLFPANYV 521
VALYDY+A +++SF + I + WW G+ G P+NYV
Sbjct: 31 VALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYV 81
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 70.2 bits (171), Expect = 3e-14
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 446 LEQERLMEELRQQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWW 505
L M L + ++ + V + + + ++ F+ + + + ++ WW
Sbjct: 95 LLNHFKMRVLTEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWW 154
Query: 506 RG-YCHGQYGLFPANYVSLQ 524
G GL PANYV +Q
Sbjct: 155 EARNALGTTGLVPANYVQIQ 174
Score = 27.8 bits (61), Expect = 6.0
Identities = 9/50 (18%), Positives = 13/50 (26%)
Query: 476 YDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ 525
Y DE + +I E ++G FP L
Sbjct: 49 YSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNH 98
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 68.2 bits (166), Expect = 3e-14
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC---HGQYGLFPANYVSLQQ 525
VA+Y++Q S ++S D++ E W+RGY G+FP +++ +++
Sbjct: 62 GVAIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFIHIKE 117
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 66.3 bits (162), Expect = 6e-14
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 472 AVALYDYQAS-ADDEISFDPDDIITNIEMID-----EGWWRGY-CHGQYGLFPANYVSL 523
A ALYD+ + E++ D++ + D WW+ +G G P NY+ +
Sbjct: 17 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 75
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 66.3 bits (162), Expect = 6e-14
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYVSLQQ 525
VALYDY+A +++SF D + +E WW+ + G P+NYV+
Sbjct: 25 DIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVD 82
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 66.2 bits (162), Expect = 6e-14
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 464 TEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG-YCHGQYGLFPANYV 521
E +ALYDYQ + E++ ++ ++ + WWR +G G P++Y+
Sbjct: 14 LWEPEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYL 72
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 65.8 bits (161), Expect = 6e-14
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 469 GYTAVALYDYQASAD-DEISFDPDDIIT-NIEMIDEGWWRGYCH--GQYGLFPANYV 521
G ++ + A + +SF D++T I +GW G G FP++Y
Sbjct: 7 GQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYT 63
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A
1bbz_A 1awo_A
Length = 63
Score = 65.3 bits (160), Expect = 7e-14
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 466 EDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEG-WWRGYCHGQYGLFPANYV 521
E+ VALYD+ AS D+ +S + + + G W G P+ Y+
Sbjct: 2 ENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYI 58
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 65.5 bits (160), Expect = 1e-13
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 465 EEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG-YCHGQYGLFPANYV 521
+E +ALYDYQ + E++ D+ ++ + WWR +G G P++Y+
Sbjct: 16 QEPEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYL 73
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 70.6 bits (172), Expect = 1e-13
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG-YCHGQYGLFPANYVSLQQ 525
V + + + ++ F+ + + + ++ WW G GL PANYV +Q
Sbjct: 150 VVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQM 204
Score = 64.8 bits (157), Expect = 1e-11
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 2/74 (2%)
Query: 452 MEELRQQGTNEDTEEDLGYTAVALYDYQASADD--EISFDPDDIITNIEMIDEGWWRGYC 509
N + + L A +D +A D ++ + + + G ++
Sbjct: 230 FSSASTSSDNIELQPRLPAKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAEL 289
Query: 510 HGQYGLFPANYVSL 523
GQ G P Y+
Sbjct: 290 DGQIGSVPHTYLRF 303
Score = 36.3 bits (83), Expect = 0.019
Identities = 9/49 (18%), Positives = 13/49 (26%)
Query: 476 YDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ 524
Y DE + +I E ++G FP L
Sbjct: 78 YSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLN 126
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 64.6 bits (158), Expect = 1e-13
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 464 TEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYV 521
+ E+ G VALY Y D++SF + + +E WW+ + G P+NYV
Sbjct: 2 SPEEQGDIVVALYPYDGIHPDDLSFKKGEKMKVLEE-HGEWWKAKSLLTKKEGFIPSNYV 60
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton, phosphorylation,
SH3 domain, DNA damage, DNA repair, nucleus; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 64.6 bits (158), Expect = 2e-13
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNI-EMIDEGWWRGYCH--GQYGLFPANYVSLQQ 525
+ YD+ A + DE++ D + + + + WW G+ GL PA ++ +
Sbjct: 8 RGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVR 65
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 70.0 bits (170), Expect = 2e-13
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
A+ A ++ + DI+ M G W G +G+ GLFP +V +
Sbjct: 240 AKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKI 293
Score = 58.1 bits (139), Expect = 2e-09
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 475 LYDYQASADDEISFDPDDIITNIEMIDEGWWRG-YCHGQYGLFPANYV 521
LYD+ + +++ F +I+ IE +E WW G+ G+ P YV
Sbjct: 131 LYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYV 178
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 64.6 bits (157), Expect = 2e-13
Identities = 15/72 (20%), Positives = 23/72 (31%), Gaps = 17/72 (23%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMI---------------DEGWWRGYCH--G 511
G+ ALY ++ +++ P D++ GW G
Sbjct: 11 GFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTR 70
Query: 512 QYGLFPANYVSL 523
Q G FP YV
Sbjct: 71 QRGDFPGTYVEF 82
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 63.9 bits (156), Expect = 3e-13
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 483 DDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
E++ DI+T + ++ WW+ + + G PA YV
Sbjct: 3 PREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 41
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 64.5 bits (157), Expect = 3e-13
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 470 YTAVALYDYQ------ASADDEISFDPDDIITNIEMIDE-GWWRG-YCHGQYGLFPANYV 521
+ VA Y Y + + E+ + +DE G++ G GQ GL P+N+V
Sbjct: 18 HLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFV 77
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 63.5 bits (155), Expect = 3e-13
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYV 521
+AL+ Y+ S D ++ F+ + + +E E WW+ GQ G P N+V
Sbjct: 10 IALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFV 59
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 69.6 bits (169), Expect = 5e-13
Identities = 25/159 (15%), Positives = 54/159 (33%)
Query: 367 EEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKL 426
EE + L K + +Q + + + ++ +
Sbjct: 72 EERFGPDSKSSALAXTLPTLPAKVYVGVKQEIAEMRIPALNAYMKSLLSLPVWVLMDEDV 131
Query: 427 LLKKQQEEDRLKAEEQARLLEQERLMEELRQQGTNEDTEEDLGYTAVALYDYQASADDEI 486
+ Q + QA + R + + A AL+D+ ++ E+
Sbjct: 132 RIFFYQSPYDSEQVPQALRRLRPRTRKVKSVSPQGNSVDRMAAPRAEALFDFTGNSKLEL 191
Query: 487 SFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ 525
+F D+I + I++ W G G G+FP ++V + +
Sbjct: 192 NFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILK 230
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 63.3 bits (154), Expect = 5e-13
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 480 ASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
A E++ DI+T + ++ WW+ + + G PA YV
Sbjct: 2 AMGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 43
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1;
IRTKS-SH3, espfu, complex structure, protein binding;
NMR {Homo sapiens}
Length = 67
Score = 62.7 bits (153), Expect = 6e-13
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 472 AVALYDYQA-SADDEISFDPDDIIT-NIEMIDEGWWRGYCH--GQYGLFPANYV 521
++ + A S +SF D+IT I +GW G G FP++Y
Sbjct: 9 VKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYT 62
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 63.7 bits (155), Expect = 7e-13
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 472 AVALYDYQAS-ADDEISFDPDDIITNIEMID-----EGWWRGY-CHGQYGLFPANYVSLQ 524
A ALYD+ + E++ D++ + D WW+ +G G P NY+ +
Sbjct: 17 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII 76
Query: 525 Q 525
+
Sbjct: 77 K 77
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm,
SH3 domain, signaling protein; NMR {Homo sapiens} PDB:
2rol_A
Length = 68
Score = 61.9 bits (151), Expect = 1e-12
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSL 523
+ YD+QA E+S D++ ++ + WW+ GQ G P N ++
Sbjct: 8 LKWVLCNYDFQARNSSELSVKQRDVLEVLDDSRK-WWKVRDPAGQEGYVPYNILTP 62
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 62.1 bits (151), Expect = 1e-12
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 3/67 (4%)
Query: 457 QQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG--YCHGQYG 514
G + E L DY + F + + I + GWW+ G+
Sbjct: 5 SSGPLPNPEGLDSDFLAVLSDYPSPDISPPIFRRGEKLRVISD-EGGWWKAISLSTGRES 63
Query: 515 LFPANYV 521
P V
Sbjct: 64 YIPGICV 70
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 61.9 bits (151), Expect = 1e-12
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 471 TAVALYDYQAS-ADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYV 521
A YD+ S + E+ DI+ GW + G P Y+
Sbjct: 4 KFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYM 57
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 64.3 bits (156), Expect = 6e-12
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEM-IDEGWWRGYCHGQYGLFPANYVSLQQ 525
A+A YD++A+ADDE+SF DI+ + D+ W++ +G+ G P NY+ ++
Sbjct: 2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKP 57
Score = 61.2 bits (148), Expect = 6e-11
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
AL+D+ D E+ F D I ++ D WW+G CHGQ G+FP NYV
Sbjct: 159 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 210
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 67.1 bits (164), Expect = 9e-12
Identities = 31/178 (17%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 269 LRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKL 328
L K L ++ +E++++ ++ L+ E +KL + L++ EEE +
Sbjct: 926 LENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTET-EKLRS-DVERLRMSEEEAKNAT 983
Query: 329 NGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKEL-- 386
N V S+ ++ I + + EK+ + + K K
Sbjct: 984 N----------------RVLSLQEE-----IAKLRKELHQTQTEKKTIEEWADKYKHETE 1022
Query: 387 ERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQE----ENQKLLLKKQQEEDRLKAE 440
+ EL+++ +K E+E + ++ + KE E + L+ ++RL+ +
Sbjct: 1023 QLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
Score = 65.5 bits (160), Expect = 2e-11
Identities = 33/193 (17%), Positives = 72/193 (37%), Gaps = 31/193 (16%)
Query: 278 KQTEEESRKRSEEEKEKRKLKDQI-DLEQAQKLEERRLSELKIKEEEIEKKLNGHSDVPL 336
K+ + E+R +K L+++I L++ + + L K +E +
Sbjct: 907 KKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYST------ 960
Query: 337 SPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQ 396
L+ ++ S +E + + + +E K + + + E+
Sbjct: 961 ----------ETEKLRSDVER---LRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK 1007
Query: 397 IRIKEEQENIKKKKEQEEKERKEQE-----ENQKLLLKKQQEEDRLKAEEQARLLEQERL 451
I+E + K + EQ E KEQ E ++L + + + + +L+E+ +
Sbjct: 1008 KTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQ 1067
Query: 452 M------EELRQQ 458
+ E LR Q
Sbjct: 1068 LELDLNDERLRYQ 1080
Score = 62.8 bits (153), Expect = 2e-10
Identities = 33/198 (16%), Positives = 71/198 (35%), Gaps = 36/198 (18%)
Query: 274 ENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQA--QKLEERRLSELKIKEEEIEKKLNGH 331
E+ + ++ R R LK + L+ + + +R L +LKI+ +E+
Sbjct: 864 EHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVER----- 918
Query: 332 SDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEE 391
K+ + E + + QR + E+ K + E+
Sbjct: 919 -------------------YKK--------LHIGLENKIMQLQRKIDEQNKEYK-SLLEK 950
Query: 392 LEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERL 451
+ +I E E ++ E+ +E + +L Q+E +L+ E E++ +
Sbjct: 951 MNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTI 1010
Query: 452 MEELRQ-QGTNEDTEEDL 468
E + + E +L
Sbjct: 1011 EEWADKYKHETEQLVSEL 1028
Score = 50.1 bits (120), Expect = 2e-06
Identities = 13/99 (13%), Positives = 39/99 (39%)
Query: 367 EEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKL 426
+ +E + ++ ++ R L R + + + + ++E K+ K + + +
Sbjct: 859 QMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVER 918
Query: 427 LLKKQQEEDRLKAEEQARLLEQERLMEELRQQGTNEDTE 465
K + + Q ++ EQ + + L ++ N +
Sbjct: 919 YKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEIT 957
Score = 40.1 bits (94), Expect = 0.002
Identities = 11/101 (10%), Positives = 40/101 (39%), Gaps = 2/101 (1%)
Query: 359 IPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQEN-IKKKKEQEEKER 417
I +Q + + K +M+ E K +++ ++ + + +
Sbjct: 843 IALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMA 902
Query: 418 KEQEENQKLLLKKQQEEDRLKAEEQARLLE-QERLMEELRQ 457
K + + K+ + + +L + ++++ Q ++ E+ ++
Sbjct: 903 KRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKE 943
Score = 36.2 bits (84), Expect = 0.026
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 8/93 (8%)
Query: 371 KEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQE----EKERKEQEENQKL 426
K Q M I + L R + + + E K Q+ R K
Sbjct: 833 KRYQCMRDATIALQALLRGYLVRNKYQMMLREH---KSIIIQKHVRGWLARVHYHRTLKA 889
Query: 427 LLKKQQEEDRLKAEEQARLLEQE-RLMEELRQQ 458
++ Q R+ A+ + + L+ E R +E ++
Sbjct: 890 IVYLQCCYRRMMAKRELKKLKIEARSVERYKKL 922
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 63.2 bits (152), Expect = 1e-11
Identities = 33/202 (16%), Positives = 52/202 (25%), Gaps = 22/202 (10%)
Query: 335 PLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEK 394
P+ P G P+ K KE V++E E E
Sbjct: 15 EPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKE----VKQEQILSLFEDTFVPEI 70
Query: 395 EQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEE 454
+ E + + ++ + E + E
Sbjct: 71 SVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGT---VE 127
Query: 455 LRQQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNI-----EMIDEGWWRGY- 508
D + A +DY A+ DE+ D++ I E DEGW G
Sbjct: 128 GGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVK 187
Query: 509 ---------CHGQYGLFPANYV 521
G+FP N+
Sbjct: 188 ESDWNQHKKLEKCRGVFPENFT 209
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 59.4 bits (144), Expect = 2e-11
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 455 LRQQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQY 513
L++ ++ +A +DY A D E+ ++ + ++ + WWR +
Sbjct: 17 LKKGSLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRT 75
Query: 514 GLFPANYV 521
G P+NYV
Sbjct: 76 GYVPSNYV 83
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 58.2 bits (141), Expect = 2e-11
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH 510
+ALYDYQ + E++ DI+T + ++ WW+ +
Sbjct: 23 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN 62
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 64.4 bits (155), Expect = 4e-11
Identities = 56/354 (15%), Positives = 110/354 (31%), Gaps = 43/354 (12%)
Query: 215 DHVEKVDKHQSQKDDNRQVVTSSKVKDLIAANSTNASKENIKPKPNIGHVKPSNLRAKFE 274
+ + K Q + V ++K A + + P L+ +
Sbjct: 133 EAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQD 192
Query: 275 NLAKQTEEESRKRSEEEKEKRKLKDQID---------LEQAQKLEERRLSELKIKEEEIE 325
+ K ++ + + + EK ++L EQ Q+ EE+RL + E++
Sbjct: 193 KIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQ 252
Query: 326 KKLN------------------GHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKE 367
K L+ +D + P + +
Sbjct: 253 KHLDLSNVAGYKAIYHDLEQSIRAADAVEDLRWFRANHGPGMAMNWPQFEEWSADLNRTL 312
Query: 368 EEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLL 427
++K+ + + L + N + + + ++E+
Sbjct: 313 SRREKKKATDGVTLTGINQTGDQSLPSKPSSTLNVPSNPAQSAQSQSSYNPFEDEDDTGS 372
Query: 428 LKKQQEEDRLKAEEQARLLE--------------QERLMEELRQQGTNEDTEEDLGYTAV 473
++++ + K + ++D
Sbjct: 373 TVSEKDDTKAKNVSSYEKTQSYPTDWSDDESNNPFSSTDANGDSNPFDDDATSGTEVRVR 432
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDE-GWWRGYC-HGQYGLFPANYVSLQQ 525
ALYDY+ DE+SF D +T +E DE GW +G +GQ GL+PANYV Q
Sbjct: 433 ALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAIQ 486
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 57.6 bits (140), Expect = 4e-11
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQQ 525
+A +DY A D E+ ++ + ++ WWR + G P+NYV +
Sbjct: 4 EVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKT-WWRVRNAANRTGYVPSNYVERKL 60
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain,
signaling protein; NMR {Homo sapiens}
Length = 72
Score = 55.8 bits (135), Expect = 2e-10
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYV 521
VA +DY A + E+ ++ + ++ WWR + G P+NYV
Sbjct: 7 EVVVVAKFDYVAQQEQELDIKKNERLWLLDDSKS-WWRVRNSMNKTGFVPSNYV 59
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 55.5 bits (134), Expect = 3e-10
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWR----GYCHGQYGLFPANYV 521
V++ DY+ ++ F + +E GWW G P+NY+
Sbjct: 12 VYVSIADYEGD-EETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYL 65
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 59.5 bits (143), Expect = 3e-10
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG-YCHGQYGLFPANYV 521
AL+D+ + ++++ F DI+ + +E WW G+ G+ P YV
Sbjct: 137 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 189
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 61.1 bits (148), Expect = 3e-10
Identities = 20/66 (30%), Positives = 30/66 (45%)
Query: 456 RQQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGL 515
Q NE + A AL+D+ D E+ F D+I ++ + WW G G
Sbjct: 17 EQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGW 76
Query: 516 FPANYV 521
FPA++V
Sbjct: 77 FPASFV 82
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 54.9 bits (133), Expect = 3e-10
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQQ 525
A + YD+ A E+S DD++ ++ WW+ G G P N + + +
Sbjct: 4 AKSKYDFVARNSSELSVMKDDVLEILD-DRRQWWKVRNASGDSGFVPNNILDIMR 57
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 54.7 bits (132), Expect = 8e-10
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWW-RGYCHGQYGLFPANYV 521
VALYDY + + D++SF D + +E E W R + G P+NYV
Sbjct: 5 IVVALYDYVSWSPDDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYV 56
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 60.2 bits (146), Expect = 1e-09
Identities = 39/206 (18%), Positives = 86/206 (41%), Gaps = 26/206 (12%)
Query: 269 LRAKFENLAKQTEEESRKRSEEEKEKRKLKDQI-DLEQAQKLEERRLSELKIKEEEIEKK 327
L + + EEE + + + EK+K++ Q+ DLE+ + EE +L++++ + K
Sbjct: 925 LEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGK 984
Query: 328 LNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEE-KEKQRMVQEEIKRKEL 386
+K + KE + +E+ + + +E
Sbjct: 985 -------------------IKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEE- 1024
Query: 387 ERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLL 446
E+ + L K + + + ++ + ++EEK R+E E+ ++ L + + AE QA++
Sbjct: 1025 EKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA 1084
Query: 447 EQE----RLMEELRQQGTNEDTEEDL 468
E + + EEL+ + E
Sbjct: 1085 ELKAQLAKKEEELQAALARLEDETSQ 1110
Score = 60.2 bits (146), Expect = 1e-09
Identities = 38/200 (19%), Positives = 88/200 (44%), Gaps = 13/200 (6%)
Query: 269 LRAKFENLAKQTEEESRKRSEEEKEKRKLKDQI-DLEQAQKLEERRLSELKIKEEEIEKK 327
++ + +L +Q EEE R + + EK +I +E + E + ++L + + +E++
Sbjct: 953 MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1012
Query: 328 LNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELE 387
++ L+ + K++ K I +++EK R E+IKRK
Sbjct: 1013 VSD-----LTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK--- 1064
Query: 388 RKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLE 447
LE E + E+ ++ + + + + ++EE + L + ++E K ++ E
Sbjct: 1065 ----LEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRE 1120
Query: 448 QERLMEELRQQGTNEDTEED 467
E + +L++ +E +
Sbjct: 1121 LESHISDLQEDLESEKAARN 1140
Score = 58.3 bits (141), Expect = 4e-09
Identities = 39/190 (20%), Positives = 78/190 (41%), Gaps = 17/190 (8%)
Query: 268 NLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQI-DLEQAQKLEERRLSELKIKEEEIEK 326
L + +L EE K K K K + I +LE K EE+ EL+ + ++E
Sbjct: 1008 LLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEG 1067
Query: 327 KLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKEL 386
+ + + + + LK Q + KEEE + +++E +K
Sbjct: 1068 ESSDLHEQIAELQAQ------IAELKA--------QLAKKEEELQAALARLEDETSQKNN 1113
Query: 387 ERKE--ELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQAR 444
K+ ELE ++E+ E+ K + + EK++++ E + L + ++ A +Q
Sbjct: 1114 ALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQEL 1173
Query: 445 LLEQERLMEE 454
+ ++
Sbjct: 1174 RGSDYKDDDD 1183
Score = 54.5 bits (131), Expect = 7e-08
Identities = 32/195 (16%), Positives = 85/195 (43%), Gaps = 21/195 (10%)
Query: 269 LRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLE-ERRLSELKIKEEEIEKK 327
+ + + + +E +K ++ +EK L++++ E E E L K++E+E+
Sbjct: 869 TKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEI 928
Query: 328 LNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKE---KQRMVQEEIKRK 384
L+ +++ +++ +Q K+ +++ ++++ +EE R+
Sbjct: 929 LHE----------------MEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQ 972
Query: 385 ELER-KEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQA 443
+L+ K + + +++++ ++ + + KERK EE L EE+
Sbjct: 973 KLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTK 1032
Query: 444 RLLEQERLMEELRQQ 458
+ E ++ EL +
Sbjct: 1033 LKNKHESMISELEVR 1047
Score = 54.1 bits (130), Expect = 9e-08
Identities = 36/192 (18%), Positives = 89/192 (46%), Gaps = 22/192 (11%)
Query: 269 LRAKFENLAKQTEEESRKRSEEEKEKRKLKDQI-DLEQAQKLEERRLSELKIKEEEIEKK 327
L+ K + + E R +K++L++ + ++E + EE R +L+ ++++++++
Sbjct: 897 LQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ 956
Query: 328 LNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELE 387
+ ++ L++ + +Q + K K+ ++++I E +
Sbjct: 957 MLD----------------LEEQLEEEEAARQKLQLEKVTADGKIKK--MEDDILIME-D 997
Query: 388 RKEELEKEQIRIKEEQENIKKK-KEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLL 446
+ +L KE+ ++E ++ E+EEK + + K + E RLK EE++R
Sbjct: 998 QNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSR-Q 1056
Query: 447 EQERLMEELRQQ 458
E E++ +L +
Sbjct: 1057 ELEKIKRKLEGE 1068
Score = 51.8 bits (124), Expect = 5e-07
Identities = 31/213 (14%), Positives = 84/213 (39%), Gaps = 24/213 (11%)
Query: 268 NLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQ----IDLEQAQKLEERRLSELKIKEEE 323
E + ++ + + +++++ L+ +K ++++ +L+ + EE
Sbjct: 907 LYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEE 966
Query: 324 IEKKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSN----------KEEEEKEK 373
E + V +K+ D + +++ N +E
Sbjct: 967 EEAARQ---------KLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLT 1017
Query: 374 QRMVQEEIKRKELER-KEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQ 432
+ +EE K K L + K + E ++ + +K +++ EK +++ E L ++
Sbjct: 1018 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIA 1077
Query: 433 EEDRLKAEEQARLLEQERLMEELRQQGTNEDTE 465
E AE +A+L ++E ++ + +E ++
Sbjct: 1078 ELQAQIAELKAQLAKKEEELQAALARLEDETSQ 1110
Score = 48.3 bits (115), Expect = 5e-06
Identities = 29/101 (28%), Positives = 58/101 (57%), Gaps = 4/101 (3%)
Query: 361 IQNSNKEEEEKEKQRMVQEEIKRKELERKE--ELEKEQIRIKEEQENIKKKKEQEEKERK 418
++ + +EEE + K +Q +R++ E ELE++ ++ EE+ +++K + E +
Sbjct: 850 LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA 909
Query: 419 EQEE-NQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQQ 458
E EE +L KKQ+ E+ L E +AR+ E+E ++L+ +
Sbjct: 910 EAEEMRVRLAAKKQELEEILH-EMEARIEEEEERSQQLQAE 949
Score = 46.4 bits (110), Expect = 2e-05
Identities = 37/205 (18%), Positives = 81/205 (39%), Gaps = 43/205 (20%)
Query: 268 NLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKK 327
+ + ++ ++ + E E++ +L ++ +L Q + E L +
Sbjct: 861 AKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAA 920
Query: 328 LNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELE 387
K++E +E ++ I+ +E E
Sbjct: 921 --------------------------------------KKQELEEILHEMEARIEEEE-E 941
Query: 388 RKEELEKEQIRIKEEQENIKKKKEQEEKER-KEQEENQKLLLKKQQEEDRLKA-EEQARL 445
R ++L+ E+ +++++ +++++ E+EE R K Q E K ++ ED + E+Q
Sbjct: 942 RSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001
Query: 446 LEQER--LMEELRQQGTNEDTEEDL 468
L +ER L E + TN EE+
Sbjct: 1002 LTKERKLLEERVSDLTTNLAEEEEK 1026
Score = 44.4 bits (105), Expect = 8e-05
Identities = 35/195 (17%), Positives = 85/195 (43%), Gaps = 23/195 (11%)
Query: 276 LAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLNGHSDVP 335
L +EE + +EE ++ K + Q + ++LE++ + K +++KL ++
Sbjct: 850 LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNL-LQEKLQAETE-- 906
Query: 336 LSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKE 395
+ + + EE E + ++EE + ++ + +K
Sbjct: 907 ------------LYAEAEEMRVRLAAKKQELEEILHEMEARIEEE--EERSQQLQAEKK- 951
Query: 396 QIRIKEEQENIKKKKEQEEKER-KEQEENQKLLLKKQQEEDRLKA--EEQARLLEQERLM 452
+++++ +++++ E+EE R K Q E K ++ ED + ++ +L ++ +L+
Sbjct: 952 --KMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLL 1009
Query: 453 EELRQQGTNEDTEED 467
EE T EE+
Sbjct: 1010 EERVSDLTTNLAEEE 1024
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 56.3 bits (135), Expect = 2e-09
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC---HGQYGLFPANYVSLQQ 525
VA+Y++Q S ++S D++ E W+RGY G+FP +++ +++
Sbjct: 20 GVAIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFIHIKE 75
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 56.6 bits (137), Expect = 2e-08
Identities = 19/203 (9%), Positives = 50/203 (24%), Gaps = 38/203 (18%)
Query: 269 LRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKL 328
L+ K + ++ + E + + ++ + L K ++K
Sbjct: 833 LQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYN 892
Query: 329 NGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELER 388
L+ + + ++ K
Sbjct: 893 RI-----------------LKKLEN-------WATTKSVYLGSNETGDSITAVQAKLKNL 928
Query: 389 KEELEKEQIRIKEEQENIKKKKEQ-------------EEKERKEQEENQKLLLKKQQEED 435
+ + Q + ++ Q E K+ ++ + + ++
Sbjct: 929 EAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKN 988
Query: 436 RLKAEEQARLLEQERLMEELRQQ 458
L AE + RL + E L
Sbjct: 989 TLLAELE-RLQKIEDLHHHHHHH 1010
Score = 31.2 bits (71), Expect = 1.0
Identities = 13/145 (8%), Positives = 28/145 (19%), Gaps = 51/145 (35%)
Query: 268 NLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKK 327
+ + K E + E + DL + E
Sbjct: 916 DSITAVQAKLKNLEAFDGECQSLEGQSNS-----DLLSILAQLTELNYNGVPELTE---- 966
Query: 328 LNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELE 387
K+ ++ V+ + +
Sbjct: 967 -------------------------------------RKDTFFAQQWTGVKSSAETYKNT 989
Query: 388 RKEELEKEQIRIKEEQENIKKKKEQ 412
ELE+ Q + E++
Sbjct: 990 LLAELERLQ-----KIEDLHHHHHH 1009
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain,
peptide complex, alternative splicing, disease mutation,
HOST-virus interaction, phosphoprotein, polymorphism;
1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A
1pks_A 1pkt_A
Length = 83
Score = 50.1 bits (119), Expect = 3e-08
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 17/72 (23%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIIT---------------NIEMIDEGWWRGYCH--G 511
GY ALYDY+ +++I DI+T + GW GY G
Sbjct: 5 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTG 64
Query: 512 QYGLFPANYVSL 523
+ G FP YV
Sbjct: 65 ERGDFPGTYVEY 76
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 54.4 bits (131), Expect = 5e-08
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYVSLQQ 525
VALYDY++ + ++SF + + + + WW GQ G P+NYV+
Sbjct: 6 VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 54.0 bits (129), Expect = 8e-08
Identities = 17/101 (16%), Positives = 39/101 (38%)
Query: 362 QNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQE 421
E ++ + E +R E E + LE+++I + E E +K+ + E E
Sbjct: 658 VQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVE 717
Query: 422 ENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQQGTNE 462
+ + + + E + +L+ + + L + E
Sbjct: 718 STGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAE 758
Score = 48.7 bits (115), Expect = 5e-06
Identities = 21/168 (12%), Positives = 52/168 (30%)
Query: 295 RKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLNGHSDVPLSPSTETPPVPVKSILKQP 354
R + + K R + E E + +P + P +
Sbjct: 580 RGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVD 639
Query: 355 TSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEE 414
P+ ++ ++ Q ++ +E K E ++ + + E K + E
Sbjct: 640 VQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEA 699
Query: 415 KERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQQGTNE 462
++ +++ + + + KAE ++R E Q +
Sbjct: 700 EKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLK 747
Score = 48.3 bits (114), Expect = 5e-06
Identities = 35/195 (17%), Positives = 62/195 (31%), Gaps = 18/195 (9%)
Query: 268 NLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKK 327
R + + E + E + + LEQ + R L E E +K
Sbjct: 649 RTRDALQRSVQLAIEITTNSQEAAAKHEAQR----LEQEARGRLERQKILDQSEAEKARK 704
Query: 328 LNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMV-QEEIKRKEL 386
E + S+ + T + S E E + V Q ++K + L
Sbjct: 705 -------------ELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQAL 751
Query: 387 ERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLL 446
+ E E E+++ E E I + + E + K Q+ K ++ + L L
Sbjct: 752 AIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLA 811
Query: 447 EQERLMEELRQQGTN 461
M+ Q
Sbjct: 812 VAGPEMQVKLLQSLG 826
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 52.1 bits (125), Expect = 1e-07
Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ 525
+ +YDY A DDE++F II + D WW+G GQ GLFP+NYV L
Sbjct: 5 VIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTT 58
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 52.6 bits (125), Expect = 2e-07
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYV 521
+ +A+Y +Q DEI +P DII +G+ +G G+ GL+P+ V
Sbjct: 443 HNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKV 496
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 50.2 bits (119), Expect = 3e-07
Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 361 IQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQ 420
I +++ +E E R +EE +RK L+ + K ++E +E+ +K+ +E
Sbjct: 74 IAQADRLTQEPESIRKWREE-QRKRLQELDAASKVM---EQEW------REKAKKDLEEW 123
Query: 421 EENQKLLLKKQQEEDRLKAEE 441
+ Q ++K + +R+ +
Sbjct: 124 NQRQSEQVEKNKINNRIADKA 144
Score = 44.0 bits (103), Expect = 3e-05
Identities = 13/75 (17%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 398 RIKEEQENIKK-----KKEQEEKERKEQEENQKLLLKKQQEED---RLKAEEQARLLEQE 449
R+ +E E+I+K +K +E + + Q+ K +++ + + ++E+ +
Sbjct: 79 RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138
Query: 450 RLMEELRQQGTNEDT 464
R+ ++ Q + D
Sbjct: 139 RIADKAFYQQPDADI 153
Score = 37.1 bits (85), Expect = 0.007
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 12/70 (17%)
Query: 365 NKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQ 424
K +E + K E E +E+ +K+ EE +++ EQ EK +
Sbjct: 95 RKRLQELDAAS------KVMEQEWREKAKKD----LEEWN--QRQSEQVEKNKINNRIAD 142
Query: 425 KLLLKKQQEE 434
K ++ +
Sbjct: 143 KAFYQQPDAD 152
Score = 32.1 bits (72), Expect = 0.30
Identities = 7/61 (11%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 270 RAKFEN-LAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKL 328
R + L + E ++ +K ++ + Q++++E+ + +I ++ ++
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK-INNRIADKAFYQQP 149
Query: 329 N 329
+
Sbjct: 150 D 150
Score = 31.3 bits (70), Expect = 0.46
Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 265 KPSNLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEI 324
+ L + E++ K EE+ ++ E + + ++ + + + LEE + + E++
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEW----NQRQSEQV 131
Query: 325 EK 326
EK
Sbjct: 132 EK 133
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 51.4 bits (123), Expect = 5e-07
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYVSLQQ 525
T VALYDY++ + ++SF + + + + WW GQ G P+NYV+
Sbjct: 87 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 143
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 51.1 bits (121), Expect = 6e-07
Identities = 33/198 (16%), Positives = 75/198 (37%), Gaps = 14/198 (7%)
Query: 269 LRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKL 328
L K ++ KQ +E S R + + +++ + K ++++KK
Sbjct: 388 LEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKY 447
Query: 329 NGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELER 388
P K I + + + + + + E+ K E+ER
Sbjct: 448 Y--------------EEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVER 493
Query: 389 KEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQ 448
+ + + K ++ E+KER QE ++L K + + +L E++ L +
Sbjct: 494 VKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALK 553
Query: 449 ERLMEELRQQGTNEDTEE 466
+ E+L ++G +++
Sbjct: 554 LQEQEQLLKEGFQKESRI 571
Score = 39.6 bits (91), Expect = 0.003
Identities = 46/266 (17%), Positives = 100/266 (37%), Gaps = 30/266 (11%)
Query: 180 QEKIEKHESQKDYAKGFGGKFGIESDRQDKSAVGWDHVEKVDKHQSQKDDNRQVVTSSKV 239
QE ++ H + A + + +EK +++ S +
Sbjct: 351 QELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGL 410
Query: 240 KDLIAANSTNASKENIKPKPNIGHVKPSNLRAKFENLAKQTEEESRKRSE-EEKEKRKLK 298
+I + K I KP K ++L K+ EE RK + EE + LK
Sbjct: 411 LQVIFSPLEEEVKAGIYSKPG----GYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLK 466
Query: 299 DQIDLEQAQKLEERRLSELKIKEEEIEKKLNGHSDVPLSPSTETPPVPVKSILKQPTSDG 358
+ + A ++ L+E + + E VK+ Q ++
Sbjct: 467 SKESMTDAILQTDQTLTEKEKEIEVER---------------------VKAESAQASAKM 505
Query: 359 IPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERK 418
+ E+ ++K+R QE +K + E++E +++++ +EQE K QE+++
Sbjct: 506 LHEMQRKNEQMMEQKERSYQEHLK----QLTEKMENDRVQLLKEQERTLALKLQEQEQLL 561
Query: 419 EQEENQKLLLKKQQEEDRLKAEEQAR 444
++ ++ + K + +D + +
Sbjct: 562 KEGFQKESRIMKNEIQDLQTKMRRRK 587
Score = 34.2 bits (77), Expect = 0.13
Identities = 15/154 (9%), Positives = 57/154 (37%), Gaps = 32/154 (20%)
Query: 270 RAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLN 329
+ + QT++ ++ +E + +R + E +R +E ++++E + +
Sbjct: 468 KESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEH 527
Query: 330 GHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERK 389
E+ E ++ ++++E+ + L+ +
Sbjct: 528 --------------------------------LKQLTEKMENDRVQLLKEQERTLALKLQ 555
Query: 390 EELEKEQIRIKEEQENIKKKKEQEEKERKEQEEN 423
E+ + + ++E +K + + + + + ++
Sbjct: 556 EQEQLLKEGFQKESRIMKNEIQDLQTKMRRRKAC 589
Score = 28.4 bits (62), Expect = 7.5
Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%)
Query: 361 IQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQ 420
I+NS ++ + + E +EL + E + + ++ + Q
Sbjct: 322 IENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFKDVDHLFQ 381
Query: 421 EENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQQGTNE 462
+E L KK+ +D K ++A L++ + E
Sbjct: 382 KELAAQLEKKR--DDFCKQNQEASSDRCSGLLQVIFSPLEEE 421
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 50.9 bits (122), Expect = 6e-07
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWW-RGYCHGQYGLFPANYV 521
VALYD+ AS D+ +S + + + G W G P+NY+
Sbjct: 47 VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYI 96
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 47.8 bits (113), Expect = 1e-06
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANY 520
+AL+ Y+ S D ++ F+ + + +E WW + GQ G P N+
Sbjct: 14 LVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNF 64
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 49.3 bits (118), Expect = 2e-06
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYV 521
VALYDY+A +++SF D + +E WW R + G P+NYV
Sbjct: 12 VALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYV 61
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 49.3 bits (118), Expect = 2e-06
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYV 521
G +A Y++ +A+ ++ F D++T + + + W + G+ G+ PANYV
Sbjct: 11 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYV 65
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 43.5 bits (102), Expect = 7e-06
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEM-IDEGWWRG--YCHGQYGLFPANYV 521
+ + + +P DI+ + + WW G + G FP N V
Sbjct: 23 GIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRV 73
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 1e-05
Identities = 75/536 (13%), Positives = 163/536 (30%), Gaps = 158/536 (29%)
Query: 110 HQHESQSDYKTG------------FGGKFGVQNDRVD-----KSAVTWDHKEVIEKHASQ 152
H H D++TG F F D D KS ++ KE I+
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS---KEEIDHIIMS 57
Query: 153 KDYSSGFGGKFGVQKDRQDKSAVGWDHQEKIEKHESQKDYAKGFGGKF---GIESDRQDK 209
KD SG F +Q++ Q+ +E+ + +Y KF I+++++
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMV-----QKFVEEVL-RINY------KFLMSPIKTEQRQP 105
Query: 210 SAVGWDHVEKVDKHQS--QKDDNRQVVTSSKVKDL------------------------- 242
S + ++E+ D+ + Q V L
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 243 IAANSTNASKENIKPKP-------NIGHV-KPSNLRAKFENLAKQTEEESRKRSEEEKEK 294
+A + + K ++ K N+ + P + + L Q + RS+
Sbjct: 166 VALDVCLSYK--VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 295 RKLKDQIDLEQAQKLEERRLSE-LKI----KEEEIEKKLNGHSDVPLSPSTETPPVPVKS 349
+ I E + L+ + L + + + N + L+ T V
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT----TRFKQVTD 279
Query: 350 ILKQPTSDGIPIQNSNKEEEEKEKQRMVQE--EIKRKELERK-------------EELEK 394
L T+ I + + + E + ++ + + + ++L R+ E +
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 395 EQIRIKE-EQENIKKKKE--------QEEKERKEQ-------EENQKL------LLKKQQ 432
+ N K E E ++ + + L+
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 433 EEDRLKAEEQARLLEQERLMEELRQQG-TNEDTEEDLGYTAVALY-DYQASADDEIS--- 487
+ + ++ +L + + +E + ++Y + + ++E +
Sbjct: 400 IKS-----------DVMVVVNKLHKYSLVEKQPKEST-ISIPSIYLELKVKLENEYALHR 447
Query: 488 -----------FDPDDIITNIEMIDEGWWR--GYCH-------GQYGLFPANYVSL 523
FD DD+I D+ ++ G+ H + LF ++
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYL--DQYFYSHIGH-HLKNIEHPERMTLFRMVFLDF 500
Score = 31.4 bits (70), Expect = 1.1
Identities = 23/158 (14%), Positives = 51/158 (32%), Gaps = 38/158 (24%)
Query: 378 QEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEE--KERKEQEENQKLL--LKKQQE 433
++ + K+ +++ ++I K+E + + +L L +QE
Sbjct: 26 EDAFV-DNFDCKD--------VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 434 EDRLKAEEQARLLEQERLMEELRQQGTNEDTEEDLGYTAVALYDYQASA--DDEISFDPD 491
E K E+ + + LM ++ E + + +Y Q +D F
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIK----TEQRQPSMMTR---MYIEQRDRLYNDNQVFAKY 129
Query: 492 DIITNIEMIDEGWWRGYCHGQ-----YGLFPANYVSLQ 524
++ R + + L PA V +
Sbjct: 130 NV-----------SRLQPYLKLRQALLELRPAKNVLID 156
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 43.1 bits (101), Expect = 2e-05
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 11/67 (16%)
Query: 470 YTAVALYDYQASADDEISFDPDDIIT---NIEMIDEGWWRGYCHGQY--------GLFPA 518
AVAL DY A ++ ++ ++ +W G G Y G FP+
Sbjct: 23 SMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPS 82
Query: 519 NYVSLQQ 525
+ V Q
Sbjct: 83 SIVREDQ 89
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV,
signaling protein/signaling protein complex; 1.68A {Mus
musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 41.9 bits (98), Expect = 2e-05
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 9/58 (15%)
Query: 473 VALYDYQA------SADDEISFDPDDIITNIEM-IDEGWWRG--YCHGQYGLFPANYV 521
+Y + + +P DI+ + + WW G + G FP N V
Sbjct: 8 EVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRV 65
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 45.4 bits (108), Expect = 5e-05
Identities = 21/156 (13%), Positives = 39/156 (25%), Gaps = 34/156 (21%)
Query: 269 LRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKL 328
+ K L ++ +K K + + + +L L+ + E +
Sbjct: 872 RQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLE 931
Query: 329 NGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKEL-E 387
SN + Q EL E
Sbjct: 932 ---------------------------------GQSNSDLLSILAQLTELNYNGVPELTE 958
Query: 388 RKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEEN 423
RK+ +Q + K E ER ++ E+
Sbjct: 959 RKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIED 994
Score = 44.3 bits (105), Expect = 9e-05
Identities = 21/166 (12%), Positives = 48/166 (28%), Gaps = 30/166 (18%)
Query: 268 NLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKK 327
+ + E ++ E R + +K+ L + + + + + E
Sbjct: 850 STWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDS 909
Query: 328 LNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELE 387
+ V++ LK ++ + E + E Q +L
Sbjct: 910 ITA----------------VQAKLKN-------LEAFDGECQSLEGQSNSDLLSILAQLT 946
Query: 388 R------KEELEKEQIRIKEEQENIKKKKEQEEKE-RKEQEENQKL 426
E E++ ++ +K E + E E QK+
Sbjct: 947 ELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKI 992
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 42.5 bits (100), Expect = 3e-04
Identities = 16/91 (17%), Positives = 35/91 (38%)
Query: 361 IQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQ 420
++ K E E + +EE + L+ LEKE+ ++ + E + K + + +
Sbjct: 172 VKEYEKRLERIEGELNYKEESLKARLKEMSNLEKEKEKLTKFVEYLDKVRRIFGRNGFQA 231
Query: 421 EENQKLLLKKQQEEDRLKAEEQARLLEQERL 451
+K + Q+ + +E E
Sbjct: 232 YLREKYVPLIQKYLNEAFSEFDLPYSFVELT 262
Score = 30.6 bits (69), Expect = 1.3
Identities = 18/162 (11%), Positives = 55/162 (33%), Gaps = 24/162 (14%)
Query: 288 SEEEKEKRKLKDQI-DLEQAQKLEERRLSELKIKEEEIEKKLNGHSDVPLSPSTETPPVP 346
S + EK + ++ +++ +K ++ +K E+ +E+
Sbjct: 142 SLKPSEKLETVAKLLGIDEFEKCYQKMGEIVKEYEKRLERI------------------- 182
Query: 347 VKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENI 406
+ + S ++ + E+EKEK E + + + + + ++ +
Sbjct: 183 EGELNYKEESLKARLKEMSNLEKEKEKLTKFVEYLD----KVRRIFGRNGFQAYLREKYV 238
Query: 407 KKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQ 448
++ + E + + + E R+ A ++
Sbjct: 239 PLIQKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDN 280
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 42.1 bits (98), Expect = 3e-04
Identities = 17/101 (16%), Positives = 48/101 (47%)
Query: 358 GIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKER 417
+ + + + + + +++ + E +++K ++ +++ E K+K Q+ K+
Sbjct: 297 AVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDS 356
Query: 418 KEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQQ 458
+ + + + +KK E + EE+ R E E+ E +Q+
Sbjct: 357 EAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQR 397
Score = 41.0 bits (95), Expect = 7e-04
Identities = 20/117 (17%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 326 KKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKE 385
+KL + + + + + + + K E E E+ ++ + K ++
Sbjct: 293 RKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQK 352
Query: 386 L-ERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEE 441
L + + EL++ ++K+ E + KE EEK R+ ++E +++ E + +
Sbjct: 353 LKDSEAELQRRHEQMKKNLE--AQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRT 407
Score = 36.0 bits (82), Expect = 0.027
Identities = 22/108 (20%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 352 KQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKE 411
K +EE + +M + E++ +++ + EK Q E E ++
Sbjct: 307 KNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRR--- 363
Query: 412 QEEKERKEQEENQKLLLKKQQ-EEDRLKAEEQARLLEQERLMEELRQQ 458
E+ ++ + ++++L K++Q E+++ E Q R+LEQ+ L +
Sbjct: 364 HEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRTLEKN 411
Score = 31.3 bits (70), Expect = 0.84
Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 26/142 (18%)
Query: 280 TEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLNGHSDVPLSPS 339
+ + + + AQ EERR K+K+ E+E
Sbjct: 292 SRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEME-------------- 337
Query: 340 TETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRI 399
++Q + + ++ E E QR ++ K E + KE EK + +
Sbjct: 338 -----------MEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRR-QF 385
Query: 400 KEEQENIKKKKEQEEKERKEQE 421
++E+ N + ++ E++ +
Sbjct: 386 EDEKANWEAQQRILEQQNSSRT 407
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 42.0 bits (98), Expect = 4e-04
Identities = 20/109 (18%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 362 QNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQE 421
+K +E + E + +++EE+ + ++ +E+E K+ E+E E+ ++
Sbjct: 312 DPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRL 371
Query: 422 ENQKLLLKKQQEEDRLKAEEQARLLEQERL-MEELRQQGTNEDTEEDLG 469
+ KK+ E+ + +++ +Q + E L+ QG+ + L
Sbjct: 372 KKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLK 420
Score = 37.0 bits (85), Expect = 0.012
Identities = 27/173 (15%), Positives = 62/173 (35%), Gaps = 33/173 (19%)
Query: 269 LRAKFENLAKQTEEE------SRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEE 322
+R E+L +QT K E + + Q +R +++++
Sbjct: 279 IRVNMEDLREQTHTRHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKK 338
Query: 323 EIEKKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIK 382
E E ++Q + + + +E EKE + +K
Sbjct: 339 EEE-------------------------MRQMFVQRVKEKEAELKEAEKELHEK-FDRLK 372
Query: 383 RKELERKEELEKEQIRIKEEQENIKKKKEQ-EEKERKEQEENQKLLLKKQQEE 434
+ + K++LE ++ + +E K++K E + + + LK+ +E+
Sbjct: 373 KLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDKEK 425
Score = 33.2 bits (75), Expect = 0.23
Identities = 18/92 (19%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 371 KEKQRMVQEEIKRKE--LERKEELEKEQIRIKEEQENIKKKKEQEEKE--RKEQEENQKL 426
+E+ E+ R+ E + + QE + K+ + E +KE+E Q
Sbjct: 287 REQTHTRHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMF 346
Query: 427 LLKKQQEEDRLKAEEQARLLEQERLMEELRQQ 458
+ + +++E LK E+ + +RL + + +
Sbjct: 347 VQRVKEKEAELKEAEKELHEKFDRLKKLHQDE 378
Score = 28.2 bits (62), Expect = 8.1
Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 265 KPSNLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEI 324
K +R F K+ E E ++ +E EK ++ ++ +KLE+++ K ++E+
Sbjct: 338 KEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKK----KSLDDEV 393
Query: 325 EK 326
Sbjct: 394 NA 395
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural genomics/proteomics
initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 92
Score = 38.0 bits (88), Expect = 6e-04
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 473 VALYDYQASADDEISFDPDDIITNIE----MIDEGWWRGYCHGQYGLFPANYVSLQQ 525
A ++ A+ D ++S D++ I+ M + W G ++++
Sbjct: 21 QAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYN 77
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 39.9 bits (93), Expect = 0.002
Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 5/122 (4%)
Query: 341 ETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIK 400
E P P+ + + +++ + E + K +E KELE + +
Sbjct: 82 EEIPDPLSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAE 141
Query: 401 EEQEN-----IKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEEL 455
E E K + +E + ++L Q+E E + E ++ L
Sbjct: 142 IEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDAL 201
Query: 456 RQ 457
+
Sbjct: 202 KN 203
Score = 33.0 bits (75), Expect = 0.28
Identities = 35/192 (18%), Positives = 58/192 (30%), Gaps = 51/192 (26%)
Query: 270 RAKFENLAKQTEEESRKRSEEEKEKRK--------LKDQIDLEQAQKLEERRLSELKIKE 321
+ LA ++E +R+ E K LK+ I++E+ EE +
Sbjct: 166 DLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDGMQEEAIQEIAGMTA 225
Query: 322 EEIE------------------------------KKLNGHSDVPLSPSTETPPVPVKSIL 351
+ +E K +N S + L+ TP + +
Sbjct: 226 DVLEAASEEVPLIGAGMATAVATGRAIEGAYKLKKVINALSGIDLT-HLRTPKIEPSVVS 284
Query: 352 KQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKE 411
I ++ K R + +E KE + IK E KK
Sbjct: 285 TILEYRAKEIPDNALAVSVLSKNRAI------------QENHKELMHIKNEILPRFKKAM 332
Query: 412 QEEKERKEQEEN 423
EEKE E+
Sbjct: 333 DEEKEICGIEDK 344
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex,
exonuclease, hydrolase, mRNA proces nuclease, nucleus,
rRNA processing, transcription; 2.20A
{Schizosaccharomyces pombe}
Length = 899
Score = 39.7 bits (91), Expect = 0.002
Identities = 27/264 (10%), Positives = 75/264 (28%), Gaps = 24/264 (9%)
Query: 262 GHVKPSNLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKE 321
G V + + Q ++ ++ ++E + + + ++ + E + + I+
Sbjct: 376 GSVNLARAEVILSAVGNQEDDIFKRLKQQEDRRNENYRRRQQRESNQESESYVDNVVIQR 435
Query: 322 EEIEKKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEI 381
+ + + PP + I D + + R +
Sbjct: 436 SVETQSTEVVTSSKSTSVDTKPPKKTQKIDAPAPVDLVNLSEKTSNRSLGATNRELINNR 495
Query: 382 KRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEE 441
L E K +K + E + E+ ++ D +++
Sbjct: 496 AANRLGLSREAAAVSSVNKLAASALKAQLVSNETLQNVPLEDSIASSSAYEDTDSIESST 555
Query: 442 QARLLEQERLMEELRQQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMID 501
++ +++ + TEE+ V LY+
Sbjct: 556 PVVHPIDTKVSNVGQKRKAPDSTEENENTDTVRLYEP----------------------- 592
Query: 502 EGWWRGYCHGQYGLFPANYVSLQQ 525
G+ Y ++ + P +++
Sbjct: 593 -GYRERYYEQKFHISPDEPEKIRE 615
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 39.2 bits (90), Expect = 0.004
Identities = 24/211 (11%), Positives = 64/211 (30%), Gaps = 12/211 (5%)
Query: 268 NLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKK 327
L + + +E R EEE L+ + + L+ +
Sbjct: 445 ELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTV 504
Query: 328 LN--GHSDVPLSPSTETPPVPVKSILKQPTSD---GIPIQNSNKEEEEKEKQRMVQ---- 378
L+ +D + +L +P + IP N K + E +++
Sbjct: 505 LDKAVQADGQVK-ECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLS 563
Query: 379 --EEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDR 436
+E+K++ + +L+ + + + +E E ++ +
Sbjct: 564 NLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQE 623
Query: 437 LKAEEQARLLEQERLMEELRQQGTNEDTEED 467
+++ L + +E + + +
Sbjct: 624 SLKKQEGLLKNIQVSHQEFSKMKQSNNEANL 654
Score = 30.7 bits (68), Expect = 1.5
Identities = 23/195 (11%), Positives = 60/195 (30%), Gaps = 18/195 (9%)
Query: 269 LRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEE-----RRLSELKIKEEE 323
++ +++ + E ++ ++ + L E+K + E
Sbjct: 515 VKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREG 574
Query: 324 IEKKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKR 383
+E L ++ + S + I E ++ +
Sbjct: 575 LENDL------------KSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQ 622
Query: 384 KELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQA 443
+ L+++E L K I++ ++ + K+ E R+E +N E E
Sbjct: 623 ESLKKQEGLLKN-IQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTK 681
Query: 444 RLLEQERLMEELRQQ 458
E ++ + +
Sbjct: 682 FYNELTEILVRFQNK 696
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 38.5 bits (90), Expect = 0.004
Identities = 26/143 (18%), Positives = 45/143 (31%), Gaps = 3/143 (2%)
Query: 278 KQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLNGHSDVPLS 337
K + K K L Q D+EQ LS + + + + + L
Sbjct: 129 KDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEE--LK 186
Query: 338 PSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQI 397
E +K ++ E Q E R E + E
Sbjct: 187 EKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAE-GRFEVINNETE 245
Query: 398 RIKEEQENIKKKKEQEEKERKEQ 420
++K E++ I + + +K+RKE
Sbjct: 246 QLKAEEKKILNQFLKIKKKRKEL 268
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 37.6 bits (88), Expect = 0.006
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 5/74 (6%)
Query: 453 EELRQQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEG---WWRGYC 509
+ L A L+DY+ DDE+ D +T I DE WW
Sbjct: 156 QFLYGVQEKMGIMNKGVIYA--LWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARL 213
Query: 510 HGQYGLFPANYVSL 523
+ + G P N + L
Sbjct: 214 NDKEGYVPRNLLGL 227
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 37.9 bits (87), Expect = 0.007
Identities = 11/67 (16%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 385 ELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQAR 444
E R E L++ +++ E N + ++E E + +E + + +++ + Q
Sbjct: 297 ENFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQE------MIARMQAQMQMQMQGG 350
Query: 445 LLEQERL 451
+ L
Sbjct: 351 DGDGGAL 357
Score = 29.8 bits (66), Expect = 2.2
Identities = 7/65 (10%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 367 EEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKL 426
E E+ + +++ +++ + + L +++ ++ QE I + + + + + + +
Sbjct: 297 ENFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMI-ARMQAQMQMQMQGGDGDGG 355
Query: 427 LLKKQ 431
L
Sbjct: 356 ALGHH 360
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 38.0 bits (87), Expect = 0.007
Identities = 18/183 (9%), Positives = 63/183 (34%), Gaps = 2/183 (1%)
Query: 278 KQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLNGHSDVPLS 337
+Q E ++ + EE + + ++ LE + ++ +S ++ + E + + +
Sbjct: 385 RQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVED 444
Query: 338 PSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQI 397
+ + + ++ + + E ++L
Sbjct: 445 ARRKQDEAAAALLAATTPQHHHVAERADTDPDHDNASDAGSESGGGDLARGPDDLVDPVA 504
Query: 398 RIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQ 457
+ E ++ Q + +++ + K+ D++ E + ++ + + E+R+
Sbjct: 505 DRRTLAERNERLHNQLKALKQDLARSCDE--TKETAMDKIHRENVRQGRDKYKTLREIRK 562
Query: 458 QGT 460
T
Sbjct: 563 GNT 565
Score = 36.1 bits (82), Expect = 0.026
Identities = 25/220 (11%), Positives = 73/220 (33%), Gaps = 30/220 (13%)
Query: 251 SKENIKPKPNIGHVKPSNLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLE 310
+ + ++ ++ + E +Q + + + + E + + +++ + +
Sbjct: 346 QMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAA 405
Query: 311 ERRLSELKIKE--------------------------EEIEKKLNGHSDVPLSPSTETPP 344
ER+ E +I+ E+ +K + + L+ +T
Sbjct: 406 ERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAATTPQHH 465
Query: 345 VPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQE 404
+ P D S + +++ +R+ E+ + R+ + +
Sbjct: 466 HVAERADTDPDHDNASDAGSESGGGDLA---RGPDDLVDPVADRRTLAERNE-RLHNQLK 521
Query: 405 NIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQAR 444
+K+ + E KE ++ +Q D+ K + R
Sbjct: 522 ALKQDLARSCDETKETAMDKIHRENVRQGRDKYKTLREIR 561
>1u3o_A Huntingtin-associated protein-interacting protein; SH3,
CIS-proline,, signaling protein; NMR {Rattus norvegicus}
Length = 82
Score = 34.6 bits (79), Expect = 0.008
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDE--GWWRGY----CHGQYGLFPANYVSL 523
V L D+ A+ E+S + +E E GW Q GL P++ + +
Sbjct: 21 VVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTLCI 77
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 36.6 bits (84), Expect = 0.013
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 17/78 (21%)
Query: 363 NSNKEEEEKEKQ---------RMVQE--------EIKRKELERKEELEKEQIRIKEEQEN 405
N+ E ++ Q ++ E + K R+KE +++
Sbjct: 183 NNRAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQRSKCGPVGSDERVKEFKQS 242
Query: 406 IKKKKEQEEKERKEQEEN 423
+ K E + E N
Sbjct: 243 LIKYMETQRSYTALAEAN 260
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 36.9 bits (86), Expect = 0.016
Identities = 15/151 (9%), Positives = 42/151 (27%), Gaps = 15/151 (9%)
Query: 356 SDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEE----------QEN 405
D + I + K+ ++++E + + K E E + E +E
Sbjct: 512 KDDLTIVAHTFGLDAKKLNELIEKENEMLA-QDKLVAETEDRKNTLEEYIYTLRGKLEEE 570
Query: 406 IKKKKEQEEKERKEQ--EENQKLLLKKQQEEDRLKAEEQARLLEQ--ERLMEELRQQGTN 461
EK + + + ++ L + + + K + L + +
Sbjct: 571 YAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGNIIRGRYLAKEEE 630
Query: 462 EDTEEDLGYTAVALYDYQASADDEISFDPDD 492
+ A + + + +
Sbjct: 631 KKQAIRSKQEASQMAAMAEKLAAQRKAEAEK 661
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.020
Identities = 40/208 (19%), Positives = 66/208 (31%), Gaps = 65/208 (31%)
Query: 328 LNGHSDVPLS---PSTETP-PVPV-------------KSILKQPTSDGIPIQN---SNKE 367
++ +S PL+ S E VP IL +PT +G + + E
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPT-EGFAADDEPTTPAE 59
Query: 368 ---------EEEKEKQRMVQ-EEIKRKELERKEE--LEKEQI------RIKEEQENIKKK 409
E ++ Q +++ L E LE I ++E + K
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 410 KE--------QEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQQGTN 461
KE + +R +++ L + E A +L+ QG
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEG---NA----------QLVAIFGGQGNT 166
Query: 462 EDTEEDLGYTAVALYD-YQASADDEISF 488
+D E+L LY Y D I F
Sbjct: 167 DDYFEEL----RDLYQTYHVLVGDLIKF 190
Score = 37.0 bits (85), Expect = 0.020
Identities = 30/167 (17%), Positives = 46/167 (27%), Gaps = 57/167 (34%)
Query: 215 DHVEKVDKHQSQKDDNRQVVTSSKVKDLIAANSTNASKENIKPKPNI--GHVKPSNLRAK 272
D+V K + H +QV S L+ N K + G P +L
Sbjct: 351 DYVNKTNSHLPA---GKQVEIS-----LV--NG---------AKNLVVSGP--PQSLYGL 389
Query: 273 FENLAKQTEEESRKRSEEEKEKRKLKDQID------------LEQAQKLEERRLSELKIK 320
L K +S +RKLK L A L + L + +
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV- 448
Query: 321 EEEIEKKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKE 367
N + +PV T DG ++ +
Sbjct: 449 ------SFNAKD---IQ-------IPVYD-----TFDGSDLRVLSGS 474
Score = 31.6 bits (71), Expect = 0.84
Identities = 42/280 (15%), Positives = 77/280 (27%), Gaps = 95/280 (33%)
Query: 46 GSGRTGGTIDM-KQLREEVAISDACYKQ--KQLEEGSKASYGY-------------GGKF 89
GS G M L + + + + ++ +YG+ F
Sbjct: 1625 GSQEQG----MGMDLYKTSKAAQDVWNRADNHFKD----TYGFSILDIVINNPVNLTIHF 1676
Query: 90 GVEKDRMDESAVGHDYVAQLHQHESQSDYKTGFGGKFGVQNDRVDKSAVTWDH-KEVI-- 146
G EK + + +Y A + E+ D K F N+ ++ T+ K ++
Sbjct: 1677 GGEKGK----RIRENYSAMIF--ETIVDGKLKTEKIFKEINEHS--TSYTFRSEKGLLSA 1728
Query: 147 --------------------EKHASQKD----------YS--SGFGGKFGVQKDRQDKSA 174
K D Y+ + ++ S
Sbjct: 1729 TQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIE------SL 1782
Query: 175 V------GWDHQEKIEKHESQKDYAKGFG---GKFGIESDRQDKSAVGWDHVEKVDKHQS 225
V G Q + + E + G+ ++ V VE+V K
Sbjct: 1783 VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV----VERVGKRTG 1838
Query: 226 QK-------DDNRQVVTSSKVKDL-IAANSTNASKE-NIK 256
+N+Q V + ++ L N N K I
Sbjct: 1839 WLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKID 1878
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 35.6 bits (81), Expect = 0.035
Identities = 5/40 (12%), Positives = 16/40 (40%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQY 513
++ + S + F D+ ++ + G + + G +
Sbjct: 9 THFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGH 48
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 33.7 bits (77), Expect = 0.037
Identities = 20/93 (21%), Positives = 47/93 (50%)
Query: 366 KEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQK 425
KE +++ +E K R++ELE++ + + +E+ +++ + + E+ + EE
Sbjct: 13 KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCD 72
Query: 426 LLLKKQQEEDRLKAEEQARLLEQERLMEELRQQ 458
L+K + + + E RL ++E + EL +
Sbjct: 73 QLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAK 105
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 35.0 bits (80), Expect = 0.051
Identities = 14/110 (12%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Query: 361 IQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQ 420
++ +++ ++K ++ +++ + +EL+ ++ I+ E IK +EQ + + K
Sbjct: 20 LKVYHQQYQDKSREY---DQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKCS 76
Query: 421 EENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQQGTNEDTEEDLGY 470
+E + ++ E++ + + L+ + +D
Sbjct: 77 KEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQDLRAQASD 126
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 34.9 bits (80), Expect = 0.061
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 400 KEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQ 457
+ +QEN +K++EE+ER+ + E Q ++++ + R E E + L+ LR
Sbjct: 390 EAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDDLVSALRS 447
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A
{Helicobacter pylori}
Length = 877
Score = 34.9 bits (79), Expect = 0.071
Identities = 36/216 (16%), Positives = 82/216 (37%), Gaps = 17/216 (7%)
Query: 269 LRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKL 328
L F + K+ ++ ++ E + + ++++AQK E+ L + + E+E+EKKL
Sbjct: 578 LIKDFLSSNKELAGKALNFNKAVAEAKSTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKL 637
Query: 329 ----------------NGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKE 372
N D + + ++I GI + S+K E+ +
Sbjct: 638 ESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYTQNLKGIKRELSDKLEKISK 697
Query: 373 KQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQ 432
+ + + + ++ K + +K + ++K E K + N L K
Sbjct: 698 DLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEWISKVENLNAALNEFKNG 757
Query: 433 EEDRLKAEEQARLLEQERLMEELRQQGTNEDTEEDL 468
+ QA+ + E ++++ D ++L
Sbjct: 758 KNKDFSKVTQAK-SDLENSVKDVIINQKVTDKVDNL 792
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 34.1 bits (77), Expect = 0.083
Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Query: 345 VPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQE 404
VP K + + + K+K V E +K+K EL+ +++R K +
Sbjct: 4 VPEKKKKVATVPGTLKKKVPAGPKTLKKKVPAVPETLKKKR-RNFAELKVKRLRKKFALK 62
Query: 405 NIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLK 438
++K + + E+ + K + + E R+
Sbjct: 63 TLRKARRKLIYEKAKH--YHKEYRQMYRTEIRMA 94
Score = 30.6 bits (68), Expect = 1.2
Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 369 EEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLL 428
E+K+K V +K+K + L+K ++ E +KKK+ + + ++ + L
Sbjct: 6 EKKKKVATVPGTLKKKVPAGPKTLKK---KVPAVPETLKKKRRNFAELKVKRLRKKFALK 62
Query: 429 KKQQEEDRLKAEEQARLLEQERLME 453
++ +L E+ ++ R M
Sbjct: 63 TLRKARRKLIYEKAKHYHKEYRQMY 87
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 34.4 bits (80), Expect = 0.092
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 15/103 (14%)
Query: 363 NSNKEEEEKEKQRMVQEEIKRKEL---------ERKEELEKEQIRIKEEQENIKKKKEQE 413
S EE + +++ +Q EI+R+ L ER + +E E ++ EE + + +
Sbjct: 397 ESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKL---RAEW 453
Query: 414 EKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELR 456
E+ER+ + ++ + + +E R + E R + R ELR
Sbjct: 454 EREREILRKLRE--AQHRLDEVRREIELAERQYDLNR-AAELR 493
Score = 30.2 bits (69), Expect = 2.2
Identities = 18/71 (25%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 390 EELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAE---EQARLL 446
+ LE+++++++ E+E +KK+K+ + +ER + E + + K +E +L+AE E+ L
Sbjct: 404 DALERKKLQLEIEREALKKEKDPDSQERLKAIEAE--IAKLTEEIAKLRAEWEREREILR 461
Query: 447 EQERLMEELRQ 457
+ L +
Sbjct: 462 KLREAQHRLDE 472
>3u5c_G RP9, S10, YS4, 40S ribosomal protein S6-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3j16_C 3u5g_G
Length = 236
Score = 33.9 bits (77), Expect = 0.094
Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 12/154 (7%)
Query: 291 EKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLNGHSDVPLSPSTETPPVPVKSI 350
+RK K L L +K E+E+E + L P ++
Sbjct: 88 RDGERKRKSVRGAIVGPDLAVLALVIVKKGEQELEGLTDTTVPKRLGPKRANN---IRKF 144
Query: 351 LKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKK 410
D + +E + EK +I+R L + L++++ + K
Sbjct: 145 FGLSKEDDVRDFVIRREVTKGEKTYTKAPKIQR--LVTPQRLQRKRHQRAL-------KV 195
Query: 411 EQEEKERKEQEENQKLLLKKQQEEDRLKAEEQAR 444
+ +R+ E +LL K+ E KAE + R
Sbjct: 196 RNAQAQREAAAEYAQLLAKRLSERKAEKAEIRKR 229
>3hh0_A Transcriptional regulator, MERR family; protein structure
initiative II(PSI II), NYSGXRC, 11183J, structural
genomics; 2.67A {Bacillus cereus atcc 14579}
Length = 146
Score = 32.8 bits (75), Expect = 0.10
Identities = 9/79 (11%), Positives = 26/79 (32%)
Query: 347 VKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENI 406
+++I+ Q + + E + ++ + +++ R+ +
Sbjct: 67 IQNIILQRDIETEVFLRQMHFQREVLLAEQERIAKVLSHMDEMTKKFQKEERVNVALFSS 126
Query: 407 KKKKEQEEKERKEQEENQK 425
+ EKE KE +
Sbjct: 127 FLQTFIWEKENKEGHHHHH 145
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo
domain, mRNA turnover, RRN processing, RNA binding, DNA
binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Length = 1155
Score = 34.6 bits (78), Expect = 0.11
Identities = 11/136 (8%), Positives = 39/136 (28%), Gaps = 1/136 (0%)
Query: 262 GHVKPSNLRAKFENLAKQTEEESRKRSEEEKE-KRKLKDQIDLEQAQKLEERRLSELKIK 320
G + + + L+ K+ + + ++L++ + ++ + +K +
Sbjct: 328 GKINLARFSIWLKYLSDFEYLNFEKKDIDVEWFNQQLENISLEGERKRTRMGKKLLMKQQ 387
Query: 321 EEEIEKKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEE 380
++ I T I + + +E + ++
Sbjct: 388 KKLIGAVKPWLLKTVQRKVTSELQDADFEIFPLEDKELVRANLDFLKEFAFDLGLILAHS 447
Query: 381 IKRKELERKEELEKEQ 396
+ K +L+
Sbjct: 448 KSKDLYYFKLDLDSIN 463
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A
{Saccharomyces cerevisiae}
Length = 956
Score = 33.9 bits (76), Expect = 0.13
Identities = 25/229 (10%), Positives = 73/229 (31%), Gaps = 4/229 (1%)
Query: 245 ANSTNASKENIKPKPNIGHVKPSNLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDL- 303
++ + P P + + ++ + + + + +
Sbjct: 541 LTFASSHNPDTHPTQKQESEGPLQMSQLDTTQLNELLKQQSFEYVQFQTLSNFQILLSVF 600
Query: 304 -EQAQKLEERRLSELKIKEEEIEKKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQ 362
+ +KLE ++ S I + K+ + S + + + + +
Sbjct: 601 NKIFEKLEMKKSSRGYILHQLNLFKITLDERIKKSKIDDADKFIRDNQPIKKEENIVNED 660
Query: 363 NSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEE 422
N K +++ I E E + E E+ + ++E + + QE+
Sbjct: 661 GPNTSRRTKRPKQIRLLSIADSSDESSTEDSNVFKKDGESIEDGAYGENEDENDSEMQEQ 720
Query: 423 NQKLLLKKQQEEDRLKAEEQARLLEQ--ERLMEELRQQGTNEDTEEDLG 469
+ ++ + + +Q E L++++ ++ E+ LG
Sbjct: 721 LKSMINELINSKISTFLRDQMDQFELKINALLDKILEEKVTRIIEQKLG 769
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 34.0 bits (78), Expect = 0.13
Identities = 17/69 (24%), Positives = 38/69 (55%)
Query: 358 GIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKER 417
PIQ +E EKE +E+ ++ + +++ E ++ EE + ++KK + +K +
Sbjct: 202 AYPIQLVVTKEVEKEVPIPEEEKKDEEKKDEEKKDEDDKKPKLEEVDEEEEKKPKTKKVK 261
Query: 418 KEQEENQKL 426
+E +E ++L
Sbjct: 262 EEVQEIEEL 270
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 33.7 bits (78), Expect = 0.14
Identities = 12/65 (18%), Positives = 31/65 (47%)
Query: 356 SDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEK 415
S P E++ E ++ ++ +E E+ L + R++E+ E+ KK ++++
Sbjct: 389 SFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQG 448
Query: 416 ERKEQ 420
+ +
Sbjct: 449 QENSE 453
Score = 30.6 bits (70), Expect = 1.4
Identities = 12/60 (20%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 390 EELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQE 449
+ELE++ +++E++ + +E E+ E + L++Q E+ + +E+ E
Sbjct: 397 KELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQR---LREQVEDTKKSWKEKQGQENSE 453
Score = 28.3 bits (64), Expect = 6.7
Identities = 12/68 (17%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 265 KPSNLRAKFENLAKQTEEESRKRSEEEKEK--------RKLKDQIDLEQAQKLEERRLSE 316
P NL+ + L + +E+ +E EK ++L++Q++ + E++
Sbjct: 392 TPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQEN 451
Query: 317 LKIKEEEI 324
++ ++I
Sbjct: 452 SEVTVDDI 459
Score = 28.3 bits (64), Expect = 7.2
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 384 KELERK-EELEKEQIRIKEEQENIKKKK-EQEEKERKEQEENQKLLLKKQQEEDRLKAEE 441
KELE+K +E+ KE+ + QE K E+ +EQ E+ K K++Q ++ +
Sbjct: 397 KELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTV 456
Query: 442 Q 442
Sbjct: 457 D 457
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 33.0 bits (74), Expect = 0.18
Identities = 13/84 (15%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 354 PTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRI---KEEQENIKKKK 410
I + +E E ++ ++ + +EL+ ++ +++ R K+ +E +++
Sbjct: 84 DGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQS 143
Query: 411 EQEEKERKEQEENQKLLLKKQQEE 434
EQ EK + K ++ +
Sbjct: 144 EQVEKNKINNRIADKAFYQQPDAD 167
Score = 29.1 bits (64), Expect = 2.5
Identities = 9/121 (7%), Positives = 47/121 (38%), Gaps = 2/121 (1%)
Query: 323 EIEKKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIK 382
E ++ + + P + + + + + + + + +
Sbjct: 39 ENDEGFGAPAGSQGGLAQPGPASGASEDMGATVNGDVFQEANGPADGYAAIAQADRLTQE 98
Query: 383 RKELERKEELEKEQIRIKEEQENIKKK--KEQEEKERKEQEENQKLLLKKQQEEDRLKAE 440
+ + + E ++++++ + + ++ +E+ +K+ +E + Q ++K + +R+ +
Sbjct: 99 PESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 158
Query: 441 E 441
Sbjct: 159 A 159
>3ue3_A Septum formation, penicillin binding protein 3, peptidoglycan
synthetase; transpeptidase, transferase; 2.30A
{Acinetobacter}
Length = 554
Score = 32.6 bits (75), Expect = 0.34
Identities = 10/91 (10%), Positives = 26/91 (28%), Gaps = 5/91 (5%)
Query: 237 SKVKDLIAANSTNASKENIKPKPNIGHVKPSNLRAKFENLAK---QTEEESRKRSEEEKE 293
D ++ P + N + LA + +K +
Sbjct: 46 RDYWDAKTQFDEITAELKKDPNNRRLRRQLPNKNLNLDELADVVGMDRKTLKKHMTDRAR 105
Query: 294 KR--KLKDQIDLEQAQKLEERRLSELKIKEE 322
R L+ ++ +QA + + + ++
Sbjct: 106 SRYLVLQREVPPQQADLILQHNFQGVYTEKS 136
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 32.5 bits (73), Expect = 0.41
Identities = 16/95 (16%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 363 NSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEE 422
N EKQ+M+++ ++ +R ++LE++ ++ Q++ + + + Q+
Sbjct: 4 NHPTAAVVTEKQQMLEQHLQ-DVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQDL 62
Query: 423 NQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQ 457
N +Q+ +L+ A + ++ EL
Sbjct: 63 NGNNQSVTRQKMQQLEQMLTALDQMRRSIVSELAG 97
>1j7n_A Lethal factor precursor; anthrax, lethal toxin, zinc
metalloprotease, mapkk, MEK; 2.30A {Bacillus anthracis}
SCOP: d.92.1.14 d.92.1.14 d.166.1.1 PDB: 1jky_A 1pwp_A*
1pwq_A* 1pwv_A 1zxv_A* 1pwu_A* 1pww_A 3kwv_C
Length = 776
Score = 32.3 bits (72), Expect = 0.43
Identities = 30/155 (19%), Positives = 59/155 (38%), Gaps = 10/155 (6%)
Query: 271 AKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLNG 330
F + K E+E EE K++R L E+ ++ + L + + KKL
Sbjct: 239 EAFNYMDKFNEQEINLSLEELKDQRMLSRYEKWEKIKQHYQHWSDSLSEEGRGLLKKL-- 296
Query: 331 HSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKE 390
+P+ P + + K+ + EEKE + +Q +I+ E ++
Sbjct: 297 --QIPIEPKKDDIIHSLSQEEKELLKRIQIDSSDFLSTEEKEFLKKLQIDIRDSLSEEEK 354
Query: 391 ELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQK 425
EL + Q + ++EKE ++ +
Sbjct: 355 EL------LNRIQVDSSNPLSEKEKEFLKKLKLDI 383
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 32.6 bits (74), Expect = 0.44
Identities = 16/85 (18%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 367 EEEEKEKQRMVQE-EIKRKELERK-EELEKEQIRIKEEQENIKKKKE--QEEKERKEQEE 422
+ E + + + K +EL+ K E+ ++ ++ ++Q+ + K++ +E + + +
Sbjct: 1930 RDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRN 1989
Query: 423 NQKLLLKKQQEEDRLKAEEQARLLE 447
+ + K + D KAE L E
Sbjct: 1990 KEIAVQKVKAYADLEKAEPTGPLRE 2014
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 32.2 bits (74), Expect = 0.47
Identities = 13/92 (14%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 361 IQNSNKEEEEKEKQRMVQEEIKRKELERK-EELEKEQIRIKEEQENI-KKKKEQEEKERK 418
+ E K+ ++ + ++L + LE+E+ + E + Q+ + +
Sbjct: 57 LDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEK---EAVTEAVRALVVNQDNSQVQ 113
Query: 419 EQEENQKLLLKKQQEEDRLKA-EEQARLLEQE 449
+ + Q L + ++ +L + LE++
Sbjct: 114 QDPQYQSLRARGREIRKQLTLLYPKEAQLEEQ 145
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 31.6 bits (72), Expect = 0.55
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 474 ALYDYQASADDEI-----SFDPDDIITNIEMIDEGWWRGY 508
AL+DY + D SF D++ I+ DE WW+
Sbjct: 6 ALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQAR 45
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A
{Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Length = 143
Score = 30.6 bits (69), Expect = 0.60
Identities = 9/81 (11%), Positives = 36/81 (44%)
Query: 377 VQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDR 436
V ++ + R EL++ + ++ + + ++ K ++ + E++ + Q+ +
Sbjct: 24 VSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAF 83
Query: 437 LKAEEQARLLEQERLMEELRQ 457
+ + E+ +L+ ++
Sbjct: 84 EQDRARRSNEERGKLVTRIQT 104
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics,
NPPSFA, national project on P structural and functional
analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1
PDB: 2dma_A 4dt0_A
Length = 198
Score = 31.1 bits (70), Expect = 0.65
Identities = 18/111 (16%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Query: 366 KEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERK---EQEE 422
+E E++ + ++ E ++ E ++E + + + K + E E++ E
Sbjct: 12 NKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANARLEV 71
Query: 423 NQKLLLKKQQEEDRLKAEEQARLL-----EQERLMEELRQQGTNEDTEEDL 468
+K L +++ + E + RL E ++ L ++ E E+ +
Sbjct: 72 RRKRLAIQEEIISSVLEEVKRRLETMSEDEYFESVKALLKEAIKELNEKKV 122
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA;
rossmann fold, FAD-binding domain, dinucleotide-binding
motif; HET: FAD; 3.20A {Chlorobium tepidum}
Length = 641
Score = 31.7 bits (73), Expect = 0.66
Identities = 16/112 (14%), Positives = 30/112 (26%), Gaps = 21/112 (18%)
Query: 310 EERRLSELKIKEEEIEKKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEE 369
+ K+ EI L L P S++K+P I +
Sbjct: 492 CLEVMKTAKVTPAEINTLLMNKGLQEL-----KTPARALSLIKRPGISLQDILEHSLSVR 546
Query: 370 EKEKQRMVQEEIKRKELERKEELEKEQIRIK------EEQENIKKKKEQEEK 415
++ + E+++ I IK EQ + +
Sbjct: 547 SAAEELCNDPRV-------AEQVQ---IEIKYEGYIKREQLVADRIARLDSL 588
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase;
4.00A {Methanosarcina mazei}
Length = 621
Score = 31.7 bits (71), Expect = 0.68
Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 15/108 (13%)
Query: 248 TNASKENIKPKPNIGHVKPSNLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQ 307
T+ SK+ I P I ++ L + ++ +EK + ++ + A
Sbjct: 431 TSESKDAIADIPVIKEEIDLAIKEVARKLKH--YLSKQSNLKKRREKEIIITKVLPKLAA 488
Query: 308 KLEE-------------RRLSELKIKEEEIEKKLNGHSDVPLSPSTET 342
K+ ++ + I+ +G DV +
Sbjct: 489 KVAHVLEKDVPDINPVVAKIMGNLLVHRVIKNNGDGTVDVAIKVKNFG 536
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 31.5 bits (71), Expect = 0.70
Identities = 12/60 (20%), Positives = 23/60 (38%)
Query: 410 KEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQQGTNEDTEEDLG 469
EE++ + E + + + L + A ++M E QQ + T+E L
Sbjct: 499 ALAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLA 558
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Length = 197
Score = 30.4 bits (69), Expect = 0.86
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
Query: 367 EEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKL 426
+E+K + EEI + E E +E E + + + K + + + E +
Sbjct: 3 SKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTRERDGI 62
Query: 427 LLKKQQEEDRLKAEEQ 442
L R+KAE +
Sbjct: 63 L--------RVKAEME 70
Score = 29.3 bits (66), Expect = 2.1
Identities = 15/84 (17%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 339 STETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQ-- 396
S++ P ++ D + + E E+ E++ E + E +E+
Sbjct: 2 SSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTRERDG 61
Query: 397 -IRIKEEQENIKKKKEQEEKERKE 419
+R+K E EN++++ E + ++ +
Sbjct: 62 ILRVKAEMENLRRRTELDIEKAHK 85
>3zqp_A Terminase small subunit; DNA-binding protein, DNA packaging; 3.00A
{Bacillus phage SF6} PDB: 3zqq_A
Length = 164
Score = 30.1 bits (67), Expect = 0.90
Identities = 12/65 (18%), Positives = 26/65 (40%)
Query: 377 VQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDR 436
++ I + E E+ + + E I +E+E+ + + + +DR
Sbjct: 70 IRARIDARLKEINEKKILQANEVLEHLTRIALGQEKEQVLMGIGKGAETKTHVEVSAKDR 129
Query: 437 LKAEE 441
+KA E
Sbjct: 130 IKALE 134
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 30.5 bits (69), Expect = 1.0
Identities = 17/101 (16%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
Query: 320 KEEEIEKKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQE 379
+++ +E+ + E P P + P + + + E+ + +
Sbjct: 5 EKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELAAA 64
Query: 380 EIKRKELERK-EELEKEQIRIKEEQENIKKKKEQEEKERKE 419
+ + ELE K E+E +R+ + EN +++ QE + ++
Sbjct: 65 KAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEK 105
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial
promoter opening, G-quartet, quadruplex, DNA binding;
2.10A {Thermus aquaticus} PDB: 3ugp_A 1ku2_A 3lev_A*
3les_A*
Length = 245
Score = 30.6 bits (69), Expect = 1.0
Identities = 8/85 (9%), Positives = 27/85 (31%)
Query: 384 KELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQA 443
E+ + L E+ + + ++ E ++ + + + + ++
Sbjct: 14 HEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIP 73
Query: 444 RLLEQERLMEELRQQGTNEDTEEDL 468
L E+ G + ++L
Sbjct: 74 GLKEKPDPKTVEEVDGKLKSLPKEL 98
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 31.3 bits (70), Expect = 1.0
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 360 PIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKE----EQENIKKKKEQEEK 415
P +E EK + R ++ +KE+ +E E E +K++E +K
Sbjct: 796 PRMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKK 855
Query: 416 ERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQE 449
KE +EN + K + K + R+L Q+
Sbjct: 856 GIKETKENDEEFYKNKYSSKPYKVDNMTRILPQQ 889
Score = 30.2 bits (67), Expect = 2.4
Identities = 16/99 (16%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Query: 335 PLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEK 394
++ V + + T+ + ++ +K++ EE K+KE E KE+ +
Sbjct: 798 MYEEASGKEVEKVATAVLSTTA------RAKARAKKTKKEKGPNEEEKKKEHEEKEKERE 851
Query: 395 EQIRIKEEQENIKKKKEQEEKERKEQE-ENQKLLLKKQQ 432
+ +E + ++ + + K + +N +L +Q
Sbjct: 852 TNKKGIKETKENDEEFYKNKYSSKPYKVDNMTRILPQQS 890
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule,
tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus
norvegicus} PDB: 3ryf_E* 3ryh_E* 3ryi_E* 1sa0_E* 1sa1_E*
1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E*
3n2g_E* 3n2k_E*
Length = 143
Score = 29.6 bits (66), Expect = 1.2
Identities = 27/108 (25%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 350 ILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKK 409
ILK P+ DG+P N++ ++ EEI++K LE EE K Q + K++
Sbjct: 21 ILKPPSFDGVPEFNASL----PRRRDPSLEEIQKK-LEAAEERRKYQEAELLKHLAEKRE 75
Query: 410 KEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQ 457
E+E ++ +E N + + K++ ++++ ++ R ++E L++
Sbjct: 76 HEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQE 123
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 30.5 bits (69), Expect = 1.3
Identities = 14/63 (22%), Positives = 31/63 (49%)
Query: 363 NSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEE 422
N N+ EE + ++E + +EL+ + EE+E+ +++ E + E + EE
Sbjct: 311 NGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEEDEEEEAESQSPEPETSEE 370
Query: 423 NQK 425
++
Sbjct: 371 EKE 373
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A
{Helicobacter pylori}
Length = 569
Score = 30.6 bits (68), Expect = 1.5
Identities = 34/212 (16%), Positives = 79/212 (37%), Gaps = 16/212 (7%)
Query: 267 SNLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEK 326
+ L F + K+ ++ ++ E + + ++++AQK E+ L + + E+E+EK
Sbjct: 316 NKLIKDFLSSNKELAGKALNFNKAVAEAKSTGNYDEVKKAQKDLEKSLRKREHLEKEVEK 375
Query: 327 KL----------------NGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEE 370
KL N D + + ++I GI + S+K E+
Sbjct: 376 KLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYTQNLKGIKRELSDKLEKI 435
Query: 371 KEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKK 430
+ + + + + ++ K + +K + ++K E K + N L K
Sbjct: 436 SKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEWISKVENLNAALNEFK 495
Query: 431 QQEEDRLKAEEQARLLEQERLMEELRQQGTNE 462
+ QA+ + + + + Q +
Sbjct: 496 NGKNKDFSKVTQAKSDLENSVKDVIINQKVTD 527
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 30.6 bits (69), Expect = 1.5
Identities = 8/56 (14%), Positives = 29/56 (51%)
Query: 400 KEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEEL 455
+ +EN K+++ +E+ R + + + + ++++ R + + ++ +M+ L
Sbjct: 378 QAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDETGVMDSL 433
Score = 28.7 bits (64), Expect = 5.9
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 374 QRMVQEEIKRKELERK-EELEKEQIRIKEEQENIKKKKEQEEKERKEQEEN 423
+ V+E KR+E E K + + + ++E+ ++K+EQ E +E
Sbjct: 377 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
Score = 27.9 bits (62), Expect = 8.9
Identities = 10/51 (19%), Positives = 27/51 (52%)
Query: 366 KEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKE 416
+ ++ ++R EE R+ KE+ EKE++ ++++E + + ++
Sbjct: 377 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural
prote intermediate filament, crosslinking; 2.95A {Homo
sapiens}
Length = 283
Score = 30.0 bits (67), Expect = 1.6
Identities = 17/164 (10%), Positives = 53/164 (32%), Gaps = 8/164 (4%)
Query: 348 KSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIK 407
+L++ +++ + + + L+ + ++E + ++
Sbjct: 72 DRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFFSDVREAEGQLQ 131
Query: 408 KKKEQEEKERKEQ-----EENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQQGTNE 462
K +E ++ + LL Q E+++L + +R ++ + +
Sbjct: 132 KLQEALRRKYSCDRSATVTRLEDLLQDAQDEKEQLNEYKGHLSGLAKRAKAVVQLKPRHP 191
Query: 463 DTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWR 506
+A+ DY+ E++ D + W+
Sbjct: 192 AHPMRGRLPLLAVCDYK---QVEVTVHKGDECQLVGPAQPSHWK 232
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1
a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F*
2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Length = 423
Score = 30.2 bits (68), Expect = 1.6
Identities = 13/80 (16%), Positives = 28/80 (35%)
Query: 375 RMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEE 434
R EI + L EE + +++E E IKK E + E + +
Sbjct: 82 RQYLHEIGQVPLLTLEEEVELARKVEEGMEAIKKLSEITGLDPDLIREVVRAKILGSARV 141
Query: 435 DRLKAEEQARLLEQERLMEE 454
+ ++ + +++
Sbjct: 142 RHIPGLKETLDPKTVEEIDQ 161
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; 2.4A {Mus musculus} SCOP:
a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Length = 386
Score = 30.3 bits (67), Expect = 1.7
Identities = 26/176 (14%), Positives = 62/176 (35%), Gaps = 16/176 (9%)
Query: 274 ENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLNGHSD 333
E++ Q + E+ + + D I +E E ++ +K+ + E
Sbjct: 217 EDMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQ 276
Query: 334 VPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQ----------RMVQEEIKR 383
L + P L + I + + + + K + +M+ +
Sbjct: 277 HLLLVRNDYEARPQYYKLIEECVSQIVLHKNGTDPDFKCRHLQIDIERLVDQMIDKTKVE 336
Query: 384 KELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKA 439
K + ELEK+ + ++ + ++ E + +++ L Q E+D L +
Sbjct: 337 KSEAKATELEKKLDSELTARHELQVEMKKMENDFEQK------LQDLQGEKDALDS 386
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 30.2 bits (68), Expect = 1.8
Identities = 12/85 (14%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 383 RKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQ 442
R + ++ +L K + +++ + +E++ + + +EE++ KAE
Sbjct: 250 RADFQKVLQLYPNNKAAKTQLAVCQQR--IRRQLAREKKLYANMFERLAEEENKAKAEAS 307
Query: 443 ARLLEQERLMEELRQQGTNEDTEED 467
+ + M+E ++ T +
Sbjct: 308 SGDHPTDTEMKEEQKSNTAGSQSQV 332
Score = 29.1 bits (65), Expect = 3.9
Identities = 7/67 (10%), Positives = 29/67 (43%)
Query: 377 VQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDR 436
+ ++ + + +L +E+ E + +++ + + E + +K++Q+ +
Sbjct: 266 AKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQKSNT 325
Query: 437 LKAEEQA 443
++ Q
Sbjct: 326 AGSQSQV 332
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 30.2 bits (67), Expect = 1.8
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 10/72 (13%)
Query: 447 EQERLMEELRQQGTNE---DTEEDLGYTAVALYDYQASADDEI-------SFDPDDIITN 496
++E + E +Q + + + + Y A+ +D++ SF+ D +
Sbjct: 13 DREAVRREAERQAQAQLEKAKTKPVAFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHV 72
Query: 497 IEMIDEGWWRGY 508
E + WW G
Sbjct: 73 KEKFNNDWWIGR 84
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 30.1 bits (68), Expect = 1.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 394 KEQIRIKEEQENIKKKKEQEEKERKEQEENQ 424
KE + +E +E +++ K +EK KE+ E Q
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 29.7 bits (67), Expect = 1.9
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 474 ALYDYQASADDEI-----SFDPDDIITNIEMIDEGWW 505
AL+DY + DD + F DI+ D+ WW
Sbjct: 10 ALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWW 46
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 29.7 bits (66), Expect = 2.2
Identities = 14/99 (14%), Positives = 43/99 (43%)
Query: 368 EEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLL 427
+KE + ++ ++L K ++ K + +++ I +++ + + E+E +
Sbjct: 38 LNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNI 97
Query: 428 LKKQQEEDRLKAEEQARLLEQERLMEELRQQGTNEDTEE 466
+ +E +A + L+ E + +Q+ ++ E
Sbjct: 98 EEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLE 136
Score = 28.9 bits (64), Expect = 3.6
Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 366 KEEEEKEKQRMVQEEIKRKELERKEE---LEKEQIRIKEEQENIKKKKEQEEKERKEQEE 422
K + K +Q + K +++K E+E + E++ K++ Q +E + +
Sbjct: 59 KLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQN 118
Query: 423 NQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQQ 458
K +KQ++ + E + LE E L+E +
Sbjct: 119 EIKRKSEKQEDLKKEMLELEKLALELESLVENEVKN 154
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH;
alpha-amylase inhibitors (AAI), lipid transfer (LT) and
SEED (SS) protein family; HET: MLR; 2.71A {Escherichia
coli}
Length = 500
Score = 29.8 bits (67), Expect = 2.5
Identities = 20/126 (15%), Positives = 56/126 (44%)
Query: 278 KQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLNGHSDVPLS 337
+QT + + ++ R+ + Q++ + E+ + +++ E+ E+ S P S
Sbjct: 354 RQTVDAALAAAQTNAAARRCQSQLERANLRPCEQHLMQKIQRDEDSYERDPYSPSQDPYS 413
Query: 338 PSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQI 397
PS S ++ + + +N+ + Q++++ + R + ++E+ K ++
Sbjct: 414 PSPYDRRGAGSSQHQERCCNELNEFENNQRCMCEALQQIMENQSDRLQGRQQEQQFKREL 473
Query: 398 RIKEEQ 403
R +Q
Sbjct: 474 RNLPQQ 479
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 29.9 bits (67), Expect = 2.6
Identities = 25/188 (13%), Positives = 56/188 (29%), Gaps = 20/188 (10%)
Query: 252 KENIKPKPNIGHVKPSNLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEE 311
+E K ++ + + L Q + R+ K + ++ + K
Sbjct: 859 REKEAEKKEKSTTDWDDVVFEVDLLKSQEINLDYILGLIFEHNRQNKGKGEMIEEVKRLI 918
Query: 312 RRLSELKIKEEEIEKKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEK 371
R + KE + + D I ++ ++
Sbjct: 919 RSSLGNRAKEGLVVDFIQ-------------------QTNLDDLPDKASIIDAFFTFAQR 959
Query: 372 EKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQ 431
E+QR + IK + L + ++ + + + E E K N + KKQ
Sbjct: 960 EQQREAEALIKEENLNE-DAAKRYIRTSLKREYATENGTELNETLPKLSPLNPQYKTKKQ 1018
Query: 432 QEEDRLKA 439
++ +
Sbjct: 1019 AVFQKIVS 1026
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 29.5 bits (67), Expect = 2.6
Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 379 EEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLK 438
+ K +E K+ Q+ I K+ K +E+ + L+ +K++ + K
Sbjct: 39 YKEWVKLRFDLDEHNKKL---NSVQKEIGKRF-------KAKEDAKDLIAEKEKLSNEKK 88
Query: 439 A-EEQARLLEQER 450
E+ ++
Sbjct: 89 EIIEKEAEADKNL 101
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain,
protein lysine methyltransferase, transferase; HET: SAM;
2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB:
2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*
Length = 440
Score = 29.4 bits (65), Expect = 2.9
Identities = 24/175 (13%), Positives = 65/175 (37%), Gaps = 12/175 (6%)
Query: 301 IDLEQAQKLEERRLSELKIKEEEIEKKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIP 360
+++ ++ + +L + + + L P +P ++ +D
Sbjct: 268 LEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPPGL----LPYLRLVALGGTDAFL 323
Query: 361 IQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIR-----IKEEQENIKKKKEQEEK 415
+++ ++ + V + + + E K + I++++E + +
Sbjct: 324 LESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRELKEGNLDSRLA 383
Query: 416 ERKEQEENQKLLLKKQQE--EDRLKAEEQARLLEQERLMEELRQQGTNEDTEEDL 468
E +K++L++ E + +Q QER +++L G N D E+L
Sbjct: 384 IAVGIREGEKMVLQQIDGIFEQKELELDQLEYY-QERRLKDLGLCGENGDILENL 437
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor,
acetylation, DNA-binding, isopeptide bond, nucleus;
2.80A {Mus musculus}
Length = 107
Score = 27.7 bits (61), Expect = 3.4
Identities = 15/71 (21%), Positives = 29/71 (40%)
Query: 366 KEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQK 425
K+ K R + K + +KEELEK++ +++E E + + + E +
Sbjct: 37 KQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYE 96
Query: 426 LLLKKQQEEDR 436
L + R
Sbjct: 97 ALQNFARTVAR 107
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged
helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Length = 534
Score = 29.5 bits (65), Expect = 3.5
Identities = 18/173 (10%), Positives = 44/173 (25%), Gaps = 6/173 (3%)
Query: 304 EQAQKLEERRLSELKIKEEEIEKKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQN 363
+ + + E L K+ + KK+ + V + + +
Sbjct: 101 DTGELIVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRC 160
Query: 364 SNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEEN 423
+ E + EK+ + + K K+ + E E
Sbjct: 161 PSVPTTE------NSDPGPPPPAPTLVINEKDMYLVPKLSLIGKGKRRRSSDEDAAGEPK 214
Query: 424 QKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQQGTNEDTEEDLGYTAVALY 476
K ++ + + +R + R Q + T+ +
Sbjct: 215 AKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIV 267
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 29.3 bits (65), Expect = 3.5
Identities = 14/88 (15%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 383 RKELERKEELEKEQIRIKEEQENIKKK-KEQEEKERKEQEENQKLLLKKQQEEDRLKAEE 441
+ + E+ E+ + + + +KK KE E++R+ + K +++ + +A +
Sbjct: 371 KGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIY---ANMFKKFAEQDAKEEANK 427
Query: 442 QARLLEQERLMEELRQQGTNEDTEEDLG 469
E + E + E+ G
Sbjct: 428 AMGKKTSEGVTNEKGTDSQAMEEEKPEG 455
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 29.1 bits (66), Expect = 3.6
Identities = 15/88 (17%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 361 IQNSNKEEEEKEKQRMVQEEIKRKELERK-EELEKEQIRIKEEQENIKKKKEQEEKERKE 419
+ + E+ K +++ + + + ++ L E+ +I E +KK E ++ +
Sbjct: 18 LIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAK 77
Query: 420 QEENQKLLLKKQQEEDRLKAEEQARLLE 447
E K + + + E + LK + L
Sbjct: 78 SREIVKRIGELENEVEELKKKIDYYLWR 105
>3g02_A Epoxide hydrolase; alpha/beta hydrolase fold, enantioselective,
mutant, directed evolution; 1.50A {Aspergillus niger}
PDB: 1qo7_A 3g0i_A*
Length = 408
Score = 29.3 bits (66), Expect = 3.7
Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 25/82 (30%)
Query: 435 DRLKAEEQARLLEQERLMEE----LRQQGTNEDTEEDLGYTAVALYD------------Y 478
+ L A E+ + E+ M + + T T +G+ L Y
Sbjct: 229 ESLSAAEKEGIARMEKFMTDGYAYAMEHSTRPST---IGH---VLSSSPIALLAWIGEKY 282
Query: 479 QASADDEISFDPDDIITNIEMI 500
D + I+ + +
Sbjct: 283 LQWVDKP--LPSETILEMV-SL 301
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 28.8 bits (65), Expect = 3.9
Identities = 6/86 (6%), Positives = 15/86 (17%), Gaps = 18/86 (20%)
Query: 373 KQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQ 432
Q + + E + + + ++ +
Sbjct: 135 GQGQIDRIVNASPEELRL--------ESSKHPTSLVPRGSYQRVNESFNRF--------- 177
Query: 433 EEDRLKAEEQARLLEQERLMEELRQQ 458
L + RL L
Sbjct: 178 -ISLLFFGGEGRLNIVSEAKSILDAG 202
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription
regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo
sapiens}
Length = 214
Score = 28.6 bits (63), Expect = 3.9
Identities = 27/180 (15%), Positives = 67/180 (37%), Gaps = 1/180 (0%)
Query: 264 VKPSNLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEE 323
K N AK L ++ + R+ + +K+ + + + + ++ R +L +
Sbjct: 28 FKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIM 87
Query: 324 IEKKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKR 383
+K + T+ + + K+P S +E + + + + +K
Sbjct: 88 SLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQEKLKTVKE 147
Query: 384 KELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQA 443
+ EKE +++ + E + E + E +K LL++ ++ R E+
Sbjct: 148 NWKNLSDS-EKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRKYGAEEC 206
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 28.1 bits (63), Expect = 4.0
Identities = 5/36 (13%), Positives = 15/36 (41%)
Query: 294 KRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLN 329
R++ ++ ++E L + E ++E +
Sbjct: 4 GRRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTD 39
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit);
GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus}
SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A*
1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A*
1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A*
1as0_A* 1as2_A* 1as3_A* ...
Length = 353
Score = 28.9 bits (64), Expect = 4.1
Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 400 KEEQENIKKKKE---QEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELR 456
E++ +++ K ++ ++ KLLL E + +Q +++ + EE
Sbjct: 6 AEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEEC 65
Query: 457 QQ 458
+Q
Sbjct: 66 KQ 67
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA,
national project on structural and functional analyses;
2.61A {Homo sapiens} SCOP: a.238.1.4
Length = 305
Score = 28.9 bits (64), Expect = 4.1
Identities = 26/143 (18%), Positives = 46/143 (32%), Gaps = 3/143 (2%)
Query: 362 QNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKER-KEQ 420
+ K ++ E E KR+ +E ++ Q ++ +I K EK R + Q
Sbjct: 123 HDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQ 182
Query: 421 EENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQ--QGTNEDTEEDLGYTAVALYDY 478
+Q K L+ + + + Q Q E +G + +
Sbjct: 183 IRHQMAEDSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEERRIVRMGESMKTYAEV 242
Query: 479 QASADDEISFDPDDIITNIEMID 501
I D I+ E ID
Sbjct: 243 DRQVIPIIGKCLDGIVKAAESID 265
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic
hypermutat protein-DNA complex, DNA mispair, cancer;
HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B*
2o8e_B* 2o8f_B*
Length = 1022
Score = 29.3 bits (66), Expect = 4.2
Identities = 5/29 (17%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 430 KQQEEDRLKAEEQARLLEQERLMEELRQQ 458
+++ + + AEE+ + ++ M L
Sbjct: 674 EKKLANLINAEERRDVSLKD-CMRRLFYN 701
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 29.4 bits (66), Expect = 4.2
Identities = 13/101 (12%), Positives = 36/101 (35%), Gaps = 8/101 (7%)
Query: 363 NSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKE--QEEKERKEQ 420
+ EK++++ +E R+ K+E + + + K E + +E
Sbjct: 139 GAILNGVPVEKRQLLTDEEYRELRYGKQE----TYPLPPGVDALVKDGEEVVKGQELAPG 194
Query: 421 EENQKLLLKKQQEEDRLKAEEQARLLEQERL--MEELRQQG 459
++ + + R++ E + RL + ++
Sbjct: 195 VVSRLDGVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEA 235
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 28.2 bits (62), Expect = 4.4
Identities = 11/62 (17%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 379 EEIKRKELERKE-ELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRL 437
EEI R++ + + + ++E ++ E++ +RK Q ++ K K + ++ +
Sbjct: 90 EEINRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQ 149
Query: 438 KA 439
Sbjct: 150 PV 151
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B*
1deq_B 2a45_H*
Length = 461
Score = 28.9 bits (64), Expect = 4.4
Identities = 19/120 (15%), Positives = 43/120 (35%), Gaps = 7/120 (5%)
Query: 349 SILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQE---- 404
+ Q +S K+ +K ++++ E E ELEK Q+ I E
Sbjct: 105 EAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSS--ELEKHQLYIDETVNSNIP 162
Query: 405 -NIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQQGTNED 463
N++ + E R + ++ + + + + + + EE+ ++G
Sbjct: 163 TNLRVLRSILENLRSKIQKLESDVSAQMEYCRTPCTVSCNIPVVSGKECEEIIRKGGETS 222
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 29.0 bits (66), Expect = 4.4
Identities = 12/69 (17%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 380 EIKRKELERK-EELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLK 438
+ +R+E+ ++ E L E+ ++ +E +K++ + + + +E ++ + + ++E +++
Sbjct: 36 DKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVE 95
Query: 439 AEEQARLLE 447
E + LL
Sbjct: 96 EELKNTLLW 104
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 29.0 bits (65), Expect = 4.7
Identities = 13/61 (21%), Positives = 27/61 (44%)
Query: 407 KKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQQGTNEDTEE 466
+KEQ ++ E + Q ++ + Q ++ +KA EQA + + E + + E
Sbjct: 15 FGQKEQTPEKETEVQNEQPVVEEIVQAQEPVKASEQAVEEQPQAHTEAEAETFAADVVEV 74
Query: 467 D 467
Sbjct: 75 T 75
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 28.3 bits (63), Expect = 4.7
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 368 EEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQE 404
+ E K I ++E + LE + IKE +
Sbjct: 192 QNELNKLTFALNSIPNSKMEERAILEDKIQDIKEVLD 228
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics,
PSI-2, protein ST initiative; NMR {Agrobacterium
tumefaciens str}
Length = 112
Score = 27.4 bits (61), Expect = 4.8
Identities = 13/66 (19%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 379 EEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLK-KQQEEDRL 437
E ++ +R+ EL + R+ + + + ++ + ++++R + N ++L + Q +D L
Sbjct: 10 ESYEKILRDRQRELYR---RLHKIEADFEEPRNPDDEDRASERSNDEVLDELGQVGQDEL 66
Query: 438 KAEEQA 443
+A + A
Sbjct: 67 RAIDAA 72
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 28.8 bits (64), Expect = 5.0
Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 4/83 (4%)
Query: 384 KELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQA 443
+EL +E+ EK I Q + +++ E EN L + + D+ + Q
Sbjct: 283 EELGWQEDFEK----ILTAQGGMGDNSKEQLLEIVHDLENLSLDQSEHESADKKDKKLQR 338
Query: 444 RLLEQERLMEELRQQGTNEDTEE 466
+ + +E
Sbjct: 339 LNGHDSDEDGASNSSSSQKAAKE 361
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; 2.20A {Eubacterium eligens}
Length = 138
Score = 27.7 bits (61), Expect = 5.4
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 380 EIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKE-QEENQKLLLKKQQEEDRLK 438
++ E +KE +K E + K E KE KE + E K + E L
Sbjct: 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134
Query: 439 AEEQ 442
++
Sbjct: 135 DSKK 138
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 28.3 bits (64), Expect = 5.4
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 347 VKSILKQPTSD--GIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQE 404
+K+++K+ S PI + + E E E ++ +E ++E+ + + EE+E
Sbjct: 196 IKNLVKK-YSQFINFPIYVWSSKTETVE------EPMEEEEAAKEEKEDSDDEAAVEEEE 248
Query: 405 NIKKKKEQEEKE 416
KK K ++ ++
Sbjct: 249 EEKKPKTKKVEK 260
>3equ_A PBP-2, penicillin-binding protein 2; class B transpeptidase, cell
DIV cell inner membrane, cell membrane, cell shape; HET:
SEP; 2.40A {Neisseria gonorrhoeae} PDB: 3eqv_A*
Length = 542
Score = 28.7 bits (65), Expect = 5.6
Identities = 12/64 (18%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 263 HVKPSNLRAKFENLAK---QTEEESRKR-SEEEKEKRKLKDQIDLEQAQKLEERRLSELK 318
+K A+ E L++ + R + ++ K +K Q+D + A++++ L
Sbjct: 62 DMKEMPSAAQLERLSELVDVPVDVLRNKLEQKGKSFIWIKRQLDPKVAEEVKALGLENFV 121
Query: 319 IKEE 322
++E
Sbjct: 122 FEKE 125
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain,
coiled-coil domain, DNA and cleavage, nucleus; HET: DNA
EVP; 2.16A {Homo sapiens}
Length = 803
Score = 28.6 bits (63), Expect = 5.9
Identities = 23/174 (13%), Positives = 53/174 (30%), Gaps = 35/174 (20%)
Query: 293 EKRK------LKDQIDLEQAQK--LEERRLSELKI---KEEEIEKKLNGHSDVPLSPSTE 341
RK L + Q + E+ ++ I ++++ + L
Sbjct: 629 GLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLV---------QRG 679
Query: 342 TPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEE---------IKRKELERKEEL 392
PVK+ + + N+ ++ + E+ EEL
Sbjct: 680 YESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEEL 739
Query: 393 EKEQIRIKEEQENIKKKKEQE--EKERKEQEENQKLLLKKQQEEDRLKAEEQAR 444
K++ E ++K+K + +++ E L K + ++R
Sbjct: 740 IKQRDAKGREVNDLKRKSPSDLWKEDLAAFVEE----LDKVESQEREDGAPGFS 789
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 6.1
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
Query: 422 ENQKLLLKKQQEEDRLK--AEEQARLLEQERLME 453
E Q L KK + LK A++ A L + ME
Sbjct: 18 EKQAL--KKL--QASLKLYADDSAPALAIKATME 47
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle,
dimer, chaperone, STRE response; 3.23A {Thermus
thermophilus}
Length = 177
Score = 28.0 bits (63), Expect = 6.1
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 362 QNSNKEEEEKEKQRMVQEEIKRKELERK-EELEKEQIRIKEEQENIKKKKEQEEKE 416
+N+ +++ E Q E + K E + + L+ + +R+ + +N +K+ E+E K
Sbjct: 7 ENTLEKDLEAVGQEAQALEERLKAAEEELKGLKDKYLRLLADFDNYRKRMEEELKA 62
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 28.5 bits (64), Expect = 6.5
Identities = 31/197 (15%), Positives = 71/197 (36%), Gaps = 28/197 (14%)
Query: 285 RKRSEEEKEKRKLKDQ---IDLEQAQKLEERRLSELKIKEEEI-EKKLNGHSDV-PLSPS 339
R R E E R ++++ +DLE ++E +L ++E I +K+++ D+ + P+
Sbjct: 6 RLRQEPEVFHRAIREKGVALDLEALLAVDE----QLHKQQEVIADKQMSVKEDLDKVEPA 61
Query: 340 TETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRM------------VQEEIKRKELE 387
VKSI KQ + + N + + ++ I R+
Sbjct: 62 VIEAQNAVKSIKKQHLVEVRSMANPPAAVKLALESIALLLGESTTDWKQIRSIIMRENFI 121
Query: 388 -----RKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEED--RLKAE 440
E + IR K ++ + E + ++ + + +
Sbjct: 122 PTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKR 181
Query: 441 EQARLLEQERLMEELRQ 457
+ E ++L ++ +
Sbjct: 182 VEPLRNELQKLEDDAKD 198
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 28.3 bits (62), Expect = 7.1
Identities = 12/99 (12%), Positives = 32/99 (32%), Gaps = 3/99 (3%)
Query: 362 QNSNKEEEEKEKQRMVQEEIKRKELERKEELEK---EQIRIKEEQENIKKKKEQEEKERK 418
+ KE++ + + + ++R E+L Q + K+QE + R
Sbjct: 119 EQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRS 178
Query: 419 EQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQ 457
+E K + + ++ + + +
Sbjct: 179 REEAQAKAQEAEALYQACVREANARQQDLEIAKQRIVSH 217
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus
turreted ICOS virus; 1.86A {Sulfolobus turreted
icosahedral virus}
Length = 203
Score = 27.7 bits (61), Expect = 7.2
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 6/37 (16%)
Query: 476 YDYQASADDEISFDPDDIITNIEMIDE------GWWR 506
YD A D+++ D +E G++
Sbjct: 54 YDTLAFLDEDVVPIEIDFQKVEAKFNEGYDVVCGYYY 90
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP,
deubiquitinating enzyme, substrate recognition; 3.20A
{Homo sapiens}
Length = 522
Score = 28.4 bits (63), Expect = 7.5
Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 387 ERKEELEKEQIRIKEE------QENIKKKKEQEEKERKEQEE 422
R+ +L + + + E ++++K E ++RKE++E
Sbjct: 481 IRESKLSEVLQAVTDHDIPQQLVERLQEEKRIEAQKRKERQE 522
>2jes_A Portal protein; DNA translocation, molecular motor, VIRA protein,
viral protein; 3.4A {Bacteriophage SPP1}
Length = 503
Score = 28.3 bits (62), Expect = 7.6
Identities = 8/49 (16%), Positives = 19/49 (38%)
Query: 377 VQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQK 425
+EE+ R E E + E + + +E + +++ E +
Sbjct: 453 PEEELARIEEEMNQYAEMQGNLLDDEGGDDDLEEDDPNAGAAESGGAGQ 501
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination,
hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9
PDB: 1nbf_A
Length = 353
Score = 27.9 bits (62), Expect = 8.2
Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 387 ERKEELEKEQIRIKEE------QENIKKKKEQEEKERKEQEE 422
R+ +L + + + E ++++K E ++RKE++E
Sbjct: 312 IRESKLSEVLQAVTDHDIPQQLVERLQEEKRIEAQKRKERQE 353
>3pbt_A Penicillin-binding protein 3; PBP3, hydrolase-antibiotic complex;
HET: UE1; 1.64A {Pseudomonas aeruginosa} PDB: 3pbn_A*
3pbo_A* 3pbr_A* 3pbs_A* 3pbq_A* 3oc2_A 3ocl_A* 3ocn_A*
Length = 538
Score = 28.0 bits (63), Expect = 8.4
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 270 RAKFENLAK---QTEEESRKRSEEEKEKR--KLKDQIDLEQAQKLEERRLSELKIKEEE 323
+ ++ LA Q + R E+ E+ L + EQ + + ++ + EE
Sbjct: 52 KERWPQLAAALGQDTKLFADRIEQNAEREFIYLVRGLTPEQGEGVIALKVPGVYSIEEF 110
>2xzm_Y RPS6E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_Y
Length = 293
Score = 27.9 bits (61), Expect = 8.4
Identities = 15/96 (15%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Query: 364 SNKEEEEKEKQRMVQEEIKRKELERKEELEKEQ-----IRIKEEQENIKKKKEQEEKERK 418
+++ K+ +++ K + + + + K Q RI ++ +K ++ K
Sbjct: 148 KKEDDPILIKKSVIRRTFKTAKGKDRTKCPKIQRLITPERILRKKVYKAEKTQRYVKTNA 207
Query: 419 EQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEE 454
+EE +K L + +++ A ++E + +E
Sbjct: 208 AKEEYEKFLSEWKKQRAAKAHAASAPVVEAPKKVEA 243
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A
{Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Length = 1193
Score = 28.1 bits (61), Expect = 8.6
Identities = 21/171 (12%), Positives = 58/171 (33%), Gaps = 8/171 (4%)
Query: 273 FENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLNGHS 332
+ + + E+ + + + + + + + + E I K+ N +
Sbjct: 462 LKGIKRNNEKIKNFDKVHYEVEDVIMNALKKVVKEGFNKSAVEASINNIEFILKEANLKT 521
Query: 333 DVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEK-------QRMVQEEIKRKE 385
+ E + + N K + + E ++ R
Sbjct: 522 SKSIDFVFEMTSKLNYNRDPLLIFEFEKYLNIVKNKIKNEPMYLEKFVEKHFINNAHRSV 581
Query: 386 LERKEELEKEQIRIKEEQENIKKKKEQ-EEKERKEQEENQKLLLKKQQEED 435
+ + + Q + E++ +KK+ E E+E+++ +N + L K + E+
Sbjct: 582 ILLEGDENYAQEQENLEKQELKKRIENFNEQEKEQVIKNFEELSKYKNAEE 632
>3rj1_B Mediator of RNA polymerase II transcription subun; RNA polymeras
II, POL II, head module, head, regulator, helical
bundle; 4.30A {Saccharomyces cerevisiae}
Length = 583
Score = 28.0 bits (61), Expect = 8.8
Identities = 11/99 (11%), Positives = 34/99 (34%)
Query: 390 EELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQE 449
+EL+ E ++ + + ++++ E + + ++ E+ + + +
Sbjct: 25 KELQNEIKQLGSDSSDGHNSEKKDTDGADENVQIGEDFMEVDYEDKDNPVDSRNETDHKT 84
Query: 450 RLMEELRQQGTNEDTEEDLGYTAVALYDYQASADDEISF 488
E T+E + ++ A +E S
Sbjct: 85 NENGETDDNIETVMTQEQFVKRRRDMLEHINLAMNESSL 123
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold,
ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Length = 997
Score = 28.2 bits (63), Expect = 8.9
Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 4/113 (3%)
Query: 357 DGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKK----KEQ 412
GIP Q N + +E + + Q + + KE
Sbjct: 542 QGIPHQVLNAKHHAREAEIVAQAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEG 601
Query: 413 EEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQQGTNEDTE 465
++ + E K ++ ++EE R A+E E + E+R++ ++
Sbjct: 602 FDRYEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEER 654
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 28.3 bits (63), Expect = 9.0
Identities = 16/101 (15%), Positives = 30/101 (29%), Gaps = 12/101 (11%)
Query: 371 KEKQRMVQEEIKRKE--LERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLL 428
K + +QE + LE+ E + + + K EKER Q
Sbjct: 1860 TAKYQDLQENQRFVNVGLEKLNESVLKVNELNKTLSISLVKSLTFEKERWLNTTKQFSKT 1919
Query: 429 KKQQEEDRLKAE----------EQARLLEQERLMEELRQQG 459
++ + + + E+ R L L +
Sbjct: 1920 SQELIGNCIISSIYETYFGHLNERERADMLVILKRLLGKFA 1960
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 27.9 bits (63), Expect = 9.1
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 17/67 (25%)
Query: 384 KELERKEELEKEQIRIKEEQENIKKK-----------KEQEEKERKEQEENQKLLLKKQQ 432
+ R EK + E ++K KE E E +EN + + ++
Sbjct: 800 EWRRR---QEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLE---QAER 853
Query: 433 EEDRLKA 439
+ L
Sbjct: 854 IREALSQ 860
>2xes_A Protein PAT1 homolog 1; mRNA decapping, P-bodies, RNA binding
protein; 2.10A {Homo sapiens} PDB: 2xer_A 2xeq_A
Length = 248
Score = 27.7 bits (61), Expect = 9.4
Identities = 7/55 (12%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 419 EQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQQGTNEDTEEDLGYTAV 473
+ E+ ++ L +EE +++ + + + LR + ++ D + +
Sbjct: 24 DVEDYERRYLLSLEEERPALMDDRKHKICS--MYDNLRGKLPGQERPSDDHFVQI 76
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 27.9 bits (63), Expect = 9.5
Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 33/101 (32%)
Query: 384 KELERK-EELEKEQ------------IRIKEEQENIKKKKEQEEKERKEQEENQKLLLKK 430
KELE+K +E+ KE+ +++ ++ ++++ E +K KE++ + +
Sbjct: 397 KELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEV-- 454
Query: 431 QQEED--------------RLKAEEQARLLEQERLMEELRQ 457
+D ++ E +LL E L
Sbjct: 455 -TVDDIAMVVSSWTGVPVSKIAQTETDKLLNME---NILHS 491
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 28.0 bits (62), Expect = 9.9
Identities = 18/183 (9%), Positives = 49/183 (26%), Gaps = 22/183 (12%)
Query: 293 EKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLNGHSDVPLSPSTETPPVPVKSILK 352
+KRK E+ Q + + + + I+ + V P + L+
Sbjct: 586 QKRK---DHMSERLQW----EVEKYSFQVKFIKMIIEKELTVTNKPRNA-----IIQELE 633
Query: 353 QPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQ 412
+ ++ ++K + ++E + +
Sbjct: 634 NLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTY 693
Query: 413 EE----------KERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQQGTNE 462
E KER ++ QK + + E + + + + ++ +
Sbjct: 694 EYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRD 753
Query: 463 DTE 465
Sbjct: 754 AEA 756
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.306 0.127 0.352
Gapped
Lambda K H
0.267 0.0364 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,947,900
Number of extensions: 494012
Number of successful extensions: 3376
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2401
Number of HSP's successfully gapped: 849
Length of query: 525
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 427
Effective length of database: 3,965,535
Effective search space: 1693283445
Effective search space used: 1693283445
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 60 (27.9 bits)