Query psy1940
Match_columns 78
No_of_seqs 106 out of 1052
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 20:12:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1940.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1940hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gqb_B Methylosome protein 50; 99.5 1.3E-13 4.6E-18 86.9 10.4 65 4-75 105-173 (344)
2 3ow8_A WD repeat-containing pr 99.5 2.1E-13 7E-18 85.0 10.0 68 4-78 230-298 (321)
3 4gqb_B Methylosome protein 50; 99.5 2.9E-13 9.8E-18 85.4 9.6 67 4-78 239-307 (344)
4 4h5i_A Guanine nucleotide-exch 99.5 1.2E-13 4.1E-18 87.4 7.1 51 4-61 293-344 (365)
5 3frx_A Guanine nucleotide-bind 99.5 2.6E-13 9E-18 84.1 8.2 70 4-75 42-111 (319)
6 3ow8_A WD repeat-containing pr 99.5 4.8E-13 1.6E-17 83.3 9.0 68 4-78 188-256 (321)
7 2ynn_A Coatomer subunit beta'; 99.4 1.2E-12 4.3E-17 80.5 10.1 65 4-75 210-274 (304)
8 1got_B GT-beta; complex (GTP-b 99.4 9.9E-13 3.4E-17 82.1 9.7 65 4-75 166-230 (340)
9 2ynn_A Coatomer subunit beta'; 99.4 1.2E-12 4.1E-17 80.6 9.3 65 4-75 79-144 (304)
10 1vyh_C Platelet-activating fac 99.4 5.9E-13 2E-17 85.1 8.2 65 4-75 320-384 (410)
11 3frx_A Guanine nucleotide-bind 99.4 1.1E-12 3.9E-17 81.3 9.2 67 4-77 178-244 (319)
12 1vyh_C Platelet-activating fac 99.4 7.9E-13 2.7E-17 84.5 8.5 65 4-75 132-196 (410)
13 4h5i_A Guanine nucleotide-exch 99.4 1.5E-12 5.1E-17 82.4 9.5 73 3-78 246-320 (365)
14 4ggc_A P55CDC, cell division c 99.4 2.8E-12 9.4E-17 78.0 10.2 65 4-75 47-113 (318)
15 4ggc_A P55CDC, cell division c 99.4 4.8E-13 1.7E-17 81.3 6.7 51 4-61 266-316 (318)
16 4gga_A P55CDC, cell division c 99.4 2.1E-12 7.3E-17 82.4 9.9 65 4-75 127-193 (420)
17 4aow_A Guanine nucleotide-bind 99.4 1E-12 3.4E-17 80.6 7.8 55 20-75 30-90 (340)
18 2xzm_R RACK1; ribosome, transl 99.4 2.7E-12 9.2E-17 80.1 9.6 70 4-75 51-122 (343)
19 3vu4_A KMHSV2; beta-propeller 99.4 3.9E-12 1.3E-16 80.0 10.1 58 21-78 188-248 (355)
20 4aow_A Guanine nucleotide-bind 99.4 2.9E-12 1E-16 78.5 9.2 66 4-76 197-262 (340)
21 4ery_A WD repeat-containing pr 99.4 5E-12 1.7E-16 77.5 10.1 65 4-75 89-153 (312)
22 3iz6_a 40S ribosomal protein R 99.4 3.3E-12 1.1E-16 80.8 9.4 61 4-70 230-290 (380)
23 2ymu_A WD-40 repeat protein; u 99.4 3.3E-12 1.1E-16 83.4 9.6 63 4-75 40-102 (577)
24 4gga_A P55CDC, cell division c 99.4 8.3E-13 2.8E-17 84.3 6.5 58 4-68 346-403 (420)
25 4g56_B MGC81050 protein; prote 99.4 3.3E-12 1.1E-16 80.5 8.8 67 4-78 251-319 (357)
26 4gq1_A NUP37; propeller, trans 99.4 1.6E-13 5.6E-18 87.3 2.8 73 4-78 113-194 (393)
27 4ery_A WD repeat-containing pr 99.4 7E-12 2.4E-16 76.8 9.9 65 4-75 47-111 (312)
28 3dm0_A Maltose-binding peripla 99.4 7.4E-12 2.5E-16 84.3 10.2 72 4-77 407-479 (694)
29 1nr0_A Actin interacting prote 99.4 5.1E-12 1.7E-16 84.3 9.4 68 4-78 172-247 (611)
30 4g56_B MGC81050 protein; prote 99.3 3.9E-12 1.3E-16 80.2 7.9 69 4-75 117-185 (357)
31 1nr0_A Actin interacting prote 99.3 1.1E-11 3.9E-16 82.6 10.4 65 4-75 41-107 (611)
32 3vl1_A 26S proteasome regulato 99.3 4.2E-12 1.4E-16 80.1 7.8 68 4-78 121-189 (420)
33 2pbi_B Guanine nucleotide-bind 99.3 1.6E-11 5.3E-16 77.2 10.3 65 4-75 178-244 (354)
34 1erj_A Transcriptional repress 99.3 9.6E-12 3.3E-16 79.0 9.1 62 4-72 147-208 (393)
35 1got_B GT-beta; complex (GTP-b 99.3 1.4E-11 4.8E-16 76.8 9.7 59 4-69 208-266 (340)
36 2ymu_A WD-40 repeat protein; u 99.3 1.2E-11 4.2E-16 80.7 9.3 65 4-77 491-556 (577)
37 2hes_X YDR267CP; beta-propelle 99.3 1.6E-11 5.5E-16 76.4 9.3 73 4-78 82-161 (330)
38 3zwl_B Eukaryotic translation 99.3 2.2E-11 7.5E-16 74.9 9.6 67 4-77 56-122 (369)
39 3v7d_B Cell division control p 99.3 1.6E-11 5.3E-16 78.6 9.2 65 4-75 292-356 (464)
40 3k26_A Polycomb protein EED; W 99.3 2.3E-11 8E-16 74.8 9.7 65 4-75 97-165 (366)
41 3gre_A Serine/threonine-protei 99.3 1.7E-11 5.7E-16 78.0 9.2 65 4-75 194-261 (437)
42 2pm7_B Protein transport prote 99.3 2.3E-11 8E-16 74.6 9.3 67 4-75 33-103 (297)
43 3odt_A Protein DOA1; ubiquitin 99.3 2.7E-11 9.1E-16 73.3 9.3 66 4-77 207-273 (313)
44 3mmy_A MRNA export factor; mRN 99.3 1.7E-11 5.9E-16 75.4 8.5 71 4-78 240-323 (368)
45 3dm0_A Maltose-binding peripla 99.3 1.2E-11 4E-16 83.3 8.2 67 4-77 543-609 (694)
46 3iz6_a 40S ribosomal protein R 99.3 9.5E-12 3.2E-16 78.7 7.2 56 19-75 57-112 (380)
47 3fm0_A Protein CIAO1; WDR39,SG 99.3 2.8E-11 9.6E-16 75.7 9.2 70 4-78 85-158 (345)
48 3bg1_A Protein SEC13 homolog; 99.3 1.5E-11 5.1E-16 76.1 7.7 67 4-75 37-107 (316)
49 2aq5_A Coronin-1A; WD40 repeat 99.3 5.2E-11 1.8E-15 75.3 10.3 73 4-78 106-184 (402)
50 1sq9_A Antiviral protein SKI8; 99.3 4.2E-11 1.4E-15 74.9 9.6 59 3-68 259-330 (397)
51 2xzm_R RACK1; ribosome, transl 99.3 4.8E-11 1.6E-15 74.4 9.8 50 4-60 100-149 (343)
52 3v7d_B Cell division control p 99.3 4.5E-11 1.5E-15 76.5 9.5 64 4-75 144-207 (464)
53 3dwl_C Actin-related protein 2 99.3 1.3E-11 4.4E-16 77.0 6.9 70 4-78 35-108 (377)
54 2pbi_B Guanine nucleotide-bind 99.3 4.5E-11 1.5E-15 75.2 9.3 59 4-69 222-280 (354)
55 1erj_A Transcriptional repress 99.3 5.2E-11 1.8E-15 75.6 9.5 68 4-78 87-173 (393)
56 3vl1_A 26S proteasome regulato 99.3 5.2E-11 1.8E-15 75.0 9.5 60 4-70 163-222 (420)
57 2hes_X YDR267CP; beta-propelle 99.3 3.8E-11 1.3E-15 74.7 8.7 69 4-75 131-201 (330)
58 4aez_A CDC20, WD repeat-contai 99.3 6.1E-11 2.1E-15 75.1 9.8 69 4-78 198-267 (401)
59 2pm9_A Protein WEB1, protein t 99.3 2.4E-11 8.3E-16 76.2 7.7 67 3-75 241-309 (416)
60 3sfz_A APAF-1, apoptotic pepti 99.3 5.2E-11 1.8E-15 83.7 9.9 65 4-75 639-703 (1249)
61 2pm7_B Protein transport prote 99.2 3.3E-11 1.1E-15 74.0 7.8 56 22-78 3-61 (297)
62 3lrv_A PRE-mRNA-splicing facto 99.2 3.8E-11 1.3E-15 74.7 8.1 65 4-75 151-218 (343)
63 2aq5_A Coronin-1A; WD40 repeat 99.2 6E-11 2.1E-15 75.0 8.7 62 4-72 156-220 (402)
64 3fm0_A Protein CIAO1; WDR39,SG 99.2 8.9E-11 3.1E-15 73.4 9.2 70 4-78 40-113 (345)
65 3zwl_B Eukaryotic translation 99.2 7.8E-11 2.7E-15 72.4 8.7 61 17-78 21-82 (369)
66 3mmy_A MRNA export factor; mRN 99.2 1.1E-10 3.9E-15 71.7 9.4 69 4-78 66-135 (368)
67 3mkq_A Coatomer beta'-subunit; 99.2 4.4E-11 1.5E-15 80.7 8.1 68 4-78 37-105 (814)
68 3f3f_A Nucleoporin SEH1; struc 99.2 1.1E-10 3.9E-15 70.8 9.1 72 4-78 35-118 (351)
69 3bg1_A Protein SEC13 homolog; 99.2 2.6E-11 8.8E-16 75.1 5.9 56 22-78 7-65 (316)
70 1pgu_A Actin interacting prote 99.2 6.3E-11 2.2E-15 77.4 7.9 68 4-78 512-592 (615)
71 2w18_A PALB2, fancn, partner a 99.2 2.4E-11 8.2E-16 78.0 5.6 48 4-58 307-355 (356)
72 4aez_A CDC20, WD repeat-contai 99.2 2.6E-10 8.9E-15 72.2 10.1 65 4-75 115-180 (401)
73 1k8k_C P40, ARP2/3 complex 41 99.2 1.8E-10 6.2E-15 71.2 8.8 59 19-78 193-252 (372)
74 3jrp_A Fusion protein of prote 99.2 1.3E-10 4.3E-15 71.8 7.9 67 4-75 35-105 (379)
75 1yfq_A Cell cycle arrest prote 99.2 3.2E-10 1.1E-14 69.5 9.6 70 4-75 218-298 (342)
76 1gxr_A ESG1, transducin-like e 99.2 2.7E-10 9.1E-15 69.4 9.1 67 4-77 165-231 (337)
77 3jrp_A Fusion protein of prote 99.2 4.9E-11 1.7E-15 73.7 5.8 58 20-78 3-63 (379)
78 3lrv_A PRE-mRNA-splicing facto 99.2 6.1E-11 2.1E-15 73.8 6.2 56 4-67 194-251 (343)
79 4a11_B DNA excision repair pro 99.2 9.3E-11 3.2E-15 73.1 7.0 58 4-68 316-373 (408)
80 3vu4_A KMHSV2; beta-propeller 99.1 1.7E-10 5.8E-15 72.5 7.5 51 4-61 220-272 (355)
81 3f3f_A Nucleoporin SEH1; struc 99.1 2.7E-10 9.2E-15 69.1 8.1 57 21-78 4-65 (351)
82 1r5m_A SIR4-interacting protei 99.1 3.6E-10 1.2E-14 70.6 8.8 65 4-75 229-293 (425)
83 1sq9_A Antiviral protein SKI8; 99.1 1.9E-10 6.7E-15 71.8 7.6 60 3-69 208-276 (397)
84 1p22_A F-BOX/WD-repeat protein 99.1 5.9E-10 2E-14 71.2 9.9 63 4-75 155-217 (435)
85 1r5m_A SIR4-interacting protei 99.1 2.5E-10 8.4E-15 71.3 7.8 68 4-78 312-402 (425)
86 1gxr_A ESG1, transducin-like e 99.1 7.5E-10 2.6E-14 67.4 9.7 67 4-75 121-187 (337)
87 2xyi_A Probable histone-bindin 99.1 6E-10 2E-14 71.4 9.6 71 4-78 256-329 (430)
88 3dwl_C Actin-related protein 2 99.1 5E-11 1.7E-15 74.3 4.0 54 20-75 198-255 (377)
89 1pgu_A Actin interacting prote 99.1 7.7E-10 2.6E-14 72.3 9.7 65 4-75 185-257 (615)
90 4e54_B DNA damage-binding prot 99.1 2.8E-10 9.4E-15 73.0 7.3 56 4-64 144-200 (435)
91 4e54_B DNA damage-binding prot 99.1 2.1E-10 7E-15 73.6 6.5 63 4-70 275-337 (435)
92 2j04_B YDR362CP, TAU91; beta p 99.1 1E-10 3.5E-15 77.8 4.5 68 4-78 335-405 (524)
93 2xyi_A Probable histone-bindin 99.1 1.1E-09 3.7E-14 70.2 9.2 69 4-78 302-386 (430)
94 2oit_A Nucleoporin 214KDA; NH2 99.1 3.5E-10 1.2E-14 73.4 6.9 73 4-78 120-200 (434)
95 2w18_A PALB2, fancn, partner a 99.1 4.6E-10 1.6E-14 72.1 7.2 62 4-71 159-223 (356)
96 2j04_B YDR362CP, TAU91; beta p 99.1 1.6E-10 5.5E-15 76.8 5.2 61 4-70 289-352 (524)
97 3mkq_A Coatomer beta'-subunit; 99.1 1.4E-09 4.7E-14 73.5 9.7 65 4-75 210-274 (814)
98 3i2n_A WD repeat-containing pr 99.1 3.9E-10 1.3E-14 69.3 6.5 68 4-78 236-329 (357)
99 3dw8_B Serine/threonine-protei 99.1 3.9E-10 1.3E-14 71.4 6.6 63 4-72 200-274 (447)
100 3ei3_B DNA damage-binding prot 99.1 1.2E-09 4.2E-14 68.3 8.8 65 4-77 187-257 (383)
101 3k26_A Polycomb protein EED; W 99.1 6.8E-10 2.3E-14 68.3 7.4 68 4-78 46-123 (366)
102 2oit_A Nucleoporin 214KDA; NH2 99.1 8.3E-10 2.8E-14 71.6 8.1 58 4-69 174-231 (434)
103 2oaj_A Protein SNI1; WD40 repe 99.1 1E-09 3.5E-14 76.6 8.9 44 20-65 567-610 (902)
104 3odt_A Protein DOA1; ubiquitin 99.0 5.9E-10 2E-14 67.4 6.7 55 19-75 9-63 (313)
105 1p22_A F-BOX/WD-repeat protein 99.0 2.9E-09 9.9E-14 68.1 10.0 63 4-75 278-340 (435)
106 1k8k_C P40, ARP2/3 complex 41 99.0 2E-09 6.9E-14 66.5 8.3 67 4-75 32-100 (372)
107 3jro_A Fusion protein of prote 99.0 1.6E-09 5.3E-14 74.1 8.4 67 4-75 33-103 (753)
108 3i2n_A WD repeat-containing pr 99.0 1.2E-09 4E-14 67.1 7.1 65 4-75 46-115 (357)
109 4a11_B DNA excision repair pro 99.0 3.6E-09 1.2E-13 65.9 9.4 57 4-67 168-226 (408)
110 2ovr_B FBW7, F-BOX/WD repeat p 99.0 2.9E-09 1E-13 68.0 9.1 63 4-75 141-203 (445)
111 3dw8_B Serine/threonine-protei 99.0 7.6E-10 2.6E-14 70.1 6.2 64 4-71 251-327 (447)
112 2j04_A TAU60, YPL007P, hypothe 99.0 2.3E-09 7.8E-14 72.6 8.5 57 20-78 117-190 (588)
113 2vdu_B TRNA (guanine-N(7)-)-me 99.0 1.1E-09 3.8E-14 70.3 6.6 67 7-75 175-245 (450)
114 4gq1_A NUP37; propeller, trans 99.0 7.3E-10 2.5E-14 70.5 5.5 59 3-68 167-226 (393)
115 2oaj_A Protein SNI1; WD40 repe 99.0 3.7E-09 1.3E-13 73.8 9.1 54 7-66 177-248 (902)
116 2vdu_B TRNA (guanine-N(7)-)-me 99.0 4.5E-09 1.5E-13 67.5 8.7 58 4-69 222-280 (450)
117 3sfz_A APAF-1, apoptotic pepti 99.0 6.9E-09 2.4E-13 73.1 10.2 65 4-75 681-747 (1249)
118 3gre_A Serine/threonine-protei 99.0 8.9E-10 3E-14 70.0 5.2 62 4-72 238-304 (437)
119 3ei3_B DNA damage-binding prot 98.9 8.9E-09 3E-13 64.4 9.3 66 4-78 143-212 (383)
120 2pm9_A Protein WEB1, protein t 98.9 4.2E-09 1.4E-13 66.0 7.1 67 4-75 47-117 (416)
121 2ovr_B FBW7, F-BOX/WD repeat p 98.9 2E-08 7E-13 64.1 9.9 63 4-75 261-323 (445)
122 1l0q_A Surface layer protein; 98.9 1.1E-08 3.7E-13 63.9 8.4 67 4-78 14-81 (391)
123 1yfq_A Cell cycle arrest prote 98.9 1.2E-08 4.1E-13 62.5 8.3 67 4-75 35-105 (342)
124 3jro_A Fusion protein of prote 98.9 1.9E-09 6.6E-14 73.6 4.6 57 21-78 2-61 (753)
125 1l0q_A Surface layer protein; 98.8 5.2E-08 1.8E-12 60.9 9.2 67 4-78 56-123 (391)
126 3bws_A Protein LP49; two-domai 98.8 3.5E-08 1.2E-12 62.4 8.4 67 4-77 193-260 (433)
127 2j04_A TAU60, YPL007P, hypothe 98.8 2.2E-08 7.4E-13 67.9 7.8 67 4-74 153-229 (588)
128 3bws_A Protein LP49; two-domai 98.8 1.8E-08 6.2E-13 63.7 6.0 64 4-74 146-214 (433)
129 1nir_A Nitrite reductase; hemo 98.7 8E-08 2.7E-12 64.0 9.1 65 4-76 161-227 (543)
130 2hqs_A Protein TOLB; TOLB, PAL 98.7 1.4E-07 4.7E-12 60.6 9.0 61 4-73 161-224 (415)
131 2oiz_A Aromatic amine dehydrog 98.6 3.9E-07 1.3E-11 57.7 7.9 63 4-76 288-353 (361)
132 2ojh_A Uncharacterized protein 98.5 3.1E-07 1.1E-11 54.5 5.7 58 4-70 24-82 (297)
133 3u4y_A Uncharacterized protein 98.5 1.2E-06 4.1E-11 53.6 7.9 64 4-75 22-87 (331)
134 3u4y_A Uncharacterized protein 98.4 1.2E-06 4.2E-11 53.5 7.9 66 7-78 66-135 (331)
135 1jmx_B Amine dehydrogenase; ox 98.4 1.1E-06 3.8E-11 53.7 6.9 59 4-70 277-335 (349)
136 1pby_B Quinohemoprotein amine 98.4 1.5E-06 5E-11 52.8 7.2 59 4-70 262-320 (337)
137 1pby_B Quinohemoprotein amine 98.3 5.7E-06 2E-10 50.2 8.3 66 4-77 221-286 (337)
138 2hqs_A Protein TOLB; TOLB, PAL 98.2 1E-05 3.4E-10 51.9 8.7 61 4-73 205-268 (415)
139 3o4h_A Acylamino-acid-releasin 98.2 8.6E-06 2.9E-10 53.7 8.5 56 7-70 179-236 (582)
140 1k32_A Tricorn protease; prote 98.2 1.1E-05 3.8E-10 56.8 9.0 53 20-73 370-422 (1045)
141 1k32_A Tricorn protease; prote 98.2 2.9E-06 9.8E-11 59.7 6.0 60 4-71 402-471 (1045)
142 1ri6_A Putative isomerase YBHE 98.1 1.3E-05 4.5E-10 48.7 7.4 70 4-77 255-329 (343)
143 3vgz_A Uncharacterized protein 98.1 1E-05 3.5E-10 49.5 6.8 57 7-69 168-224 (353)
144 3vgz_A Uncharacterized protein 98.1 2.5E-05 8.6E-10 47.7 8.3 58 4-68 113-181 (353)
145 1xfd_A DIP, dipeptidyl aminope 98.1 7.3E-06 2.5E-10 55.0 6.0 53 4-63 39-103 (723)
146 2ojh_A Uncharacterized protein 98.1 2E-05 6.9E-10 46.6 7.3 60 7-71 155-216 (297)
147 1qks_A Cytochrome CD1 nitrite 98.1 3.5E-05 1.2E-09 51.9 9.2 65 4-76 179-245 (567)
148 1ri6_A Putative isomerase YBHE 98.1 2.4E-05 8.3E-10 47.5 7.6 69 4-77 17-90 (343)
149 1nir_A Nitrite reductase; hemo 98.0 3.1E-05 1.1E-09 51.6 8.0 58 4-69 202-266 (543)
150 3hfq_A Uncharacterized protein 97.9 3.2E-05 1.1E-09 47.6 6.6 55 7-64 266-323 (347)
151 2ecf_A Dipeptidyl peptidase IV 97.9 5.1E-05 1.7E-09 51.1 7.4 61 4-70 131-191 (741)
152 1z68_A Fibroblast activation p 97.9 5.3E-06 1.8E-10 55.8 2.5 53 4-63 38-102 (719)
153 1jmx_B Amine dehydrogenase; ox 97.9 0.0001 3.5E-09 44.9 8.1 59 4-69 23-83 (349)
154 3scy_A Hypothetical bacterial 97.9 4.7E-05 1.6E-09 47.2 6.6 50 27-77 257-312 (361)
155 2ecf_A Dipeptidyl peptidase IV 97.9 1.7E-05 5.8E-10 53.4 4.4 30 30-61 110-139 (741)
156 2oiz_A Aromatic amine dehydrog 97.9 4.8E-05 1.6E-09 48.0 6.3 54 7-68 35-98 (361)
157 1xfd_A DIP, dipeptidyl aminope 97.8 6.2E-05 2.1E-09 50.5 6.4 58 4-68 230-297 (723)
158 3pe7_A Oligogalacturonate lyas 97.8 5.2E-05 1.8E-09 47.1 5.7 49 20-69 72-120 (388)
159 2mad_H Methylamine dehydrogena 97.7 0.00026 9.1E-09 45.1 8.4 62 7-75 302-366 (373)
160 2z3z_A Dipeptidyl aminopeptida 97.7 2.4E-05 8.2E-10 52.5 3.6 57 4-69 103-164 (706)
161 1xip_A Nucleoporin NUP159; bet 97.7 8.8E-05 3E-09 48.1 5.8 49 7-67 150-200 (388)
162 3o4h_A Acylamino-acid-releasin 97.7 3E-05 1E-09 51.2 3.4 38 27-65 20-58 (582)
163 3scy_A Hypothetical bacterial 97.7 0.00013 4.3E-09 45.3 6.1 71 4-78 284-359 (361)
164 2z3z_A Dipeptidyl aminopeptida 97.7 7.8E-05 2.7E-09 50.0 5.3 36 31-67 183-251 (706)
165 1jof_A Carboxy-CIS,CIS-muconat 97.6 0.00072 2.4E-08 42.3 8.9 36 27-63 143-180 (365)
166 1mda_H Methylamine dehydrogena 97.6 0.0002 6.9E-09 46.0 6.5 63 7-76 298-362 (368)
167 3hfq_A Uncharacterized protein 97.6 0.0001 3.5E-09 45.4 4.9 49 7-59 67-116 (347)
168 3sjl_D Methylamine dehydrogena 97.5 0.0006 2.1E-08 44.2 7.6 64 7-77 315-380 (386)
169 1z68_A Fibroblast activation p 97.4 0.00024 8.1E-09 47.9 5.0 36 29-66 110-145 (719)
170 1mda_H Methylamine dehydrogena 97.4 0.0004 1.4E-08 44.6 5.7 55 7-69 50-114 (368)
171 3dsm_A Uncharacterized protein 97.4 0.0012 4.1E-08 41.0 7.6 58 7-71 68-125 (328)
172 2mad_H Methylamine dehydrogena 97.4 0.0017 5.7E-08 41.4 8.3 58 3-69 48-115 (373)
173 4a5s_A Dipeptidyl peptidase 4 97.4 0.00037 1.3E-08 47.5 5.4 51 7-65 96-146 (740)
174 3pe7_A Oligogalacturonate lyas 97.3 0.00028 9.5E-09 43.8 4.5 52 19-71 21-80 (388)
175 3c75_H MADH, methylamine dehyd 97.3 0.0017 5.7E-08 42.6 8.0 63 4-74 352-417 (426)
176 2gop_A Trilobed protease; beta 97.3 0.0011 3.7E-08 40.6 6.5 36 31-67 106-168 (347)
177 2xdw_A Prolyl endopeptidase; a 97.2 0.00037 1.3E-08 47.2 4.6 39 27-66 123-166 (710)
178 3azo_A Aminopeptidase; POP fam 97.2 0.001 3.5E-08 44.3 6.5 43 24-66 237-280 (662)
179 3sjl_D Methylamine dehydrogena 97.2 0.00086 2.9E-08 43.5 5.7 54 7-68 63-126 (386)
180 3no2_A Uncharacterized protein 97.2 0.0023 7.9E-08 39.1 7.1 57 4-70 17-74 (276)
181 2gop_A Trilobed protease; beta 97.1 0.0019 6.6E-08 39.5 6.5 39 29-68 59-102 (347)
182 3azo_A Aminopeptidase; POP fam 97.1 0.00036 1.2E-08 46.5 3.4 40 20-60 116-170 (662)
183 3c5m_A Oligogalacturonate lyas 97.1 0.00099 3.4E-08 41.2 5.2 35 33-68 85-119 (396)
184 2bkl_A Prolyl endopeptidase; m 97.1 0.00019 6.6E-09 48.6 2.1 38 26-64 118-160 (695)
185 2dg1_A DRP35, lactonase; beta 97.1 0.004 1.4E-07 37.9 7.7 47 20-67 36-82 (333)
186 1xip_A Nucleoporin NUP159; bet 97.1 0.0025 8.6E-08 41.3 7.0 53 4-65 108-160 (388)
187 4a5s_A Dipeptidyl peptidase 4 97.1 0.00025 8.4E-09 48.4 2.2 54 4-64 38-105 (740)
188 3c75_H MADH, methylamine dehyd 97.0 0.0014 4.7E-08 43.0 5.6 56 4-68 101-166 (426)
189 3fvz_A Peptidyl-glycine alpha- 96.9 0.004 1.4E-07 38.4 6.6 47 7-59 272-321 (329)
190 3g4e_A Regucalcin; six bladed 96.9 0.0044 1.5E-07 37.7 6.6 50 27-77 197-247 (297)
191 1q7f_A NHL, brain tumor CG1071 96.9 0.017 5.8E-07 34.4 9.0 48 20-69 196-246 (286)
192 3e5z_A Putative gluconolactona 96.8 0.016 5.4E-07 34.9 8.8 43 20-63 163-206 (296)
193 2dg1_A DRP35, lactonase; beta 96.8 0.015 5E-07 35.4 8.5 38 26-64 84-125 (333)
194 3c5m_A Oligogalacturonate lyas 96.8 0.0011 3.8E-08 41.0 3.2 46 20-66 22-75 (396)
195 3dsm_A Uncharacterized protein 96.7 0.0078 2.7E-07 37.2 6.6 64 7-77 156-231 (328)
196 3e5z_A Putative gluconolactona 96.6 0.025 8.6E-07 34.0 8.6 44 21-65 61-104 (296)
197 3fvz_A Peptidyl-glycine alpha- 96.6 0.0094 3.2E-07 36.7 6.7 38 30-68 197-235 (329)
198 1yr2_A Prolyl oligopeptidase; 96.6 0.0013 4.5E-08 44.9 2.9 37 29-66 163-204 (741)
199 1jof_A Carboxy-CIS,CIS-muconat 96.6 0.008 2.7E-07 37.5 6.3 36 28-65 39-75 (365)
200 3iuj_A Prolyl endopeptidase; h 96.5 0.0014 4.7E-08 44.6 2.4 38 27-65 127-169 (693)
201 1q7f_A NHL, brain tumor CG1071 96.4 0.034 1.2E-06 33.1 8.1 48 20-69 153-202 (286)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 96.4 0.012 3.9E-07 35.4 5.8 46 24-70 220-266 (314)
203 1qks_A Cytochrome CD1 nitrite 96.1 0.036 1.2E-06 37.4 7.8 58 4-69 220-284 (567)
204 1pjx_A Dfpase, DIISOPROPYLFLUO 95.9 0.058 2E-06 32.3 7.3 40 20-60 259-299 (314)
205 2bkl_A Prolyl endopeptidase; m 95.8 0.036 1.2E-06 37.6 6.6 37 26-63 224-264 (695)
206 1yiq_A Quinohemoprotein alcoho 95.7 0.03 1E-06 38.4 6.1 59 4-70 457-515 (689)
207 3no2_A Uncharacterized protein 95.5 0.078 2.7E-06 32.2 6.9 49 19-69 156-204 (276)
208 1rwi_B Serine/threonine-protei 95.4 0.11 3.8E-06 30.4 7.2 34 29-63 192-225 (270)
209 1kb0_A Quinohemoprotein alcoho 95.4 0.037 1.3E-06 37.9 5.5 58 7-71 461-518 (677)
210 1rwi_B Serine/threonine-protei 95.2 0.05 1.7E-06 31.9 5.1 34 28-62 233-266 (270)
211 2xdw_A Prolyl endopeptidase; a 95.1 0.13 4.5E-06 34.9 7.6 33 27-60 231-268 (710)
212 2hz6_A Endoplasmic reticulum t 95.0 0.014 4.9E-07 36.8 2.5 54 7-68 23-76 (369)
213 3hrp_A Uncharacterized protein 94.9 0.099 3.4E-06 33.5 6.3 40 29-69 131-170 (409)
214 4gq2_M Nucleoporin NUP120; bet 94.7 0.083 2.8E-06 37.7 5.9 38 30-68 237-274 (950)
215 1yr2_A Prolyl oligopeptidase; 94.0 0.42 1.4E-05 32.7 8.1 32 29-61 268-304 (741)
216 1fwx_A Nitrous oxide reductase 93.9 0.16 5.6E-06 34.8 5.8 50 7-61 258-309 (595)
217 2iwa_A Glutamine cyclotransfer 93.9 0.4 1.4E-05 29.5 7.1 48 20-69 11-62 (266)
218 4fhn_B Nucleoporin NUP120; pro 93.7 0.074 2.5E-06 38.5 4.0 38 30-68 239-276 (1139)
219 2ghs_A AGR_C_1268P; regucalcin 93.4 0.77 2.6E-05 28.1 9.7 43 27-71 228-270 (326)
220 2qe8_A Uncharacterized protein 93.4 0.25 8.6E-06 30.5 5.7 41 27-68 65-110 (343)
221 3qqz_A Putative uncharacterize 93.2 0.57 1.9E-05 28.6 7.0 53 23-77 21-76 (255)
222 2qe8_A Uncharacterized protein 92.7 0.55 1.9E-05 29.0 6.5 40 29-69 120-163 (343)
223 2iwa_A Glutamine cyclotransfer 92.6 0.18 6.3E-06 31.0 4.2 55 7-69 90-144 (266)
224 3g4e_A Regucalcin; six bladed 92.6 0.39 1.3E-05 29.0 5.6 33 29-62 149-184 (297)
225 2z2n_A Virginiamycin B lyase; 92.3 0.66 2.3E-05 27.2 6.3 38 24-63 10-47 (299)
226 3f7f_A Nucleoporin NUP120; nuc 91.9 0.48 1.6E-05 33.3 5.9 37 30-69 223-259 (729)
227 3dr2_A Exported gluconolactona 91.9 1.3 4.3E-05 26.7 7.5 41 20-62 36-77 (305)
228 2ghs_A AGR_C_1268P; regucalcin 91.4 0.78 2.7E-05 28.1 6.1 32 29-61 179-213 (326)
229 3nok_A Glutaminyl cyclase; bet 91.3 0.44 1.5E-05 29.6 4.8 54 7-69 120-173 (268)
230 3mbr_X Glutamine cyclotransfer 91.3 0.62 2.1E-05 28.4 5.4 54 7-69 89-142 (243)
231 3nok_A Glutaminyl cyclase; bet 91.3 0.95 3.2E-05 28.1 6.2 40 34-76 101-141 (268)
232 3dr2_A Exported gluconolactona 91.2 1.5 5.3E-05 26.3 8.0 40 21-62 78-117 (305)
233 3nol_A Glutamine cyclotransfer 91.1 0.29 1E-05 30.2 3.9 54 7-69 111-164 (262)
234 3hrp_A Uncharacterized protein 90.9 1.8 6.2E-05 27.6 7.6 36 27-63 217-252 (409)
235 3nol_A Glutamine cyclotransfer 90.0 1.9 6.4E-05 26.6 6.8 60 7-73 69-129 (262)
236 2ece_A 462AA long hypothetical 89.5 0.92 3.1E-05 30.3 5.4 38 32-70 191-247 (462)
237 2z2n_A Virginiamycin B lyase; 89.2 2.1 7.3E-05 24.9 8.4 32 27-59 55-86 (299)
238 2hz6_A Endoplasmic reticulum t 89.2 0.74 2.5E-05 28.9 4.7 30 39-69 8-37 (369)
239 1kv9_A Type II quinohemoprotei 88.7 1.1 3.8E-05 30.6 5.5 35 35-70 464-498 (668)
240 3pbp_A Nucleoporin NUP82; beta 88.4 1.1 3.7E-05 29.9 5.1 32 28-60 124-158 (452)
241 3sre_A PON1, serum paraoxonase 88.2 1 3.5E-05 28.8 4.8 29 30-59 222-251 (355)
242 2ad6_A Methanol dehydrogenase 88.2 0.92 3.2E-05 30.5 4.8 31 39-70 474-504 (571)
243 2qc5_A Streptogramin B lactona 87.9 2.7 9.1E-05 24.5 6.3 37 26-64 17-53 (300)
244 3iuj_A Prolyl endopeptidase; h 86.9 5.5 0.00019 27.1 8.3 33 28-61 233-269 (693)
245 1flg_A Protein (quinoprotein e 86.4 1.3 4.6E-05 29.8 4.8 31 39-70 496-526 (582)
246 2xe4_A Oligopeptidase B; hydro 86.0 0.69 2.4E-05 32.0 3.3 32 30-62 175-213 (751)
247 3das_A Putative oxidoreductase 85.8 2.8 9.7E-05 26.7 5.9 42 21-63 24-65 (347)
248 3mbr_X Glutamine cyclotransfer 83.4 5.7 0.00019 24.1 7.8 38 39-77 73-111 (243)
249 2p4o_A Hypothetical protein; p 83.4 5.5 0.00019 24.0 7.1 40 20-61 24-63 (306)
250 1fwx_A Nitrous oxide reductase 81.7 3 0.0001 28.7 4.9 43 30-73 332-384 (595)
251 2qc5_A Streptogramin B lactona 80.7 6.3 0.00022 22.9 8.1 36 26-63 227-262 (300)
252 3hxj_A Pyrrolo-quinoline quino 78.9 7.9 0.00027 22.9 6.1 43 23-68 131-173 (330)
253 1npe_A Nidogen, entactin; glyc 78.5 7.8 0.00027 22.6 9.6 44 29-73 167-211 (267)
254 1w6s_A Methanol dehydrogenase 78.5 4.8 0.00016 27.4 5.1 30 39-69 483-512 (599)
255 2fp8_A Strictosidine synthase; 78.1 2.9 9.8E-05 25.3 3.7 34 29-63 19-52 (322)
256 2p9w_A MAL S 1 allergenic prot 77.6 8.1 0.00028 24.7 5.7 29 31-60 187-215 (334)
257 2ece_A 462AA long hypothetical 77.4 14 0.00046 24.8 7.9 63 3-67 44-126 (462)
258 1cru_A Protein (soluble quinop 75.6 13 0.00044 24.3 6.4 41 21-62 19-59 (454)
259 3q7m_A Lipoprotein YFGL, BAMB; 74.6 12 0.00042 22.9 6.7 29 40-69 318-346 (376)
260 3tc9_A Hypothetical hydrolase; 73.9 4.1 0.00014 26.3 3.7 46 30-76 138-184 (430)
261 2p4o_A Hypothetical protein; p 73.7 6.4 0.00022 23.7 4.4 31 31-63 214-244 (306)
262 1yiq_A Quinohemoprotein alcoho 70.2 22 0.00075 24.4 6.8 29 39-68 315-346 (689)
263 2g8s_A Glucose/sorbosone dehyd 69.2 8.6 0.0003 24.0 4.4 29 29-59 18-47 (353)
264 2ism_A Putative oxidoreductase 68.8 16 0.00056 22.7 5.6 36 20-57 22-57 (352)
265 3tc9_A Hypothetical hydrolase; 67.7 20 0.00067 23.1 5.9 33 30-63 227-260 (430)
266 3amr_A 3-phytase; beta-propell 67.4 22 0.00075 22.9 7.1 47 29-76 128-185 (355)
267 4hvt_A Ritya.17583.B, post-pro 65.7 9.4 0.00032 26.6 4.3 34 31-64 131-169 (711)
268 1k3i_A Galactose oxidase precu 63.1 23 0.00079 23.9 5.7 32 30-62 244-276 (656)
269 2xzh_A Clathrin heavy chain 1; 63.1 28 0.00097 22.6 6.2 43 31-74 262-304 (365)
270 4hw6_A Hypothetical protein, I 62.9 28 0.00095 22.5 6.6 45 30-75 140-186 (433)
271 1kb0_A Quinohemoprotein alcoho 62.7 8.5 0.00029 26.4 3.6 32 37-69 321-355 (677)
272 3sbq_A Nitrous-oxide reductase 61.7 24 0.00081 24.7 5.5 40 20-60 315-354 (638)
273 2xe4_A Oligopeptidase B; hydro 61.4 34 0.0012 23.6 6.4 32 29-61 271-305 (751)
274 3hxj_A Pyrrolo-quinoline quino 61.2 23 0.00077 20.9 5.6 36 28-68 176-211 (330)
275 3q7m_A Lipoprotein YFGL, BAMB; 59.3 28 0.00094 21.2 7.6 30 39-69 102-131 (376)
276 2fp8_A Strictosidine synthase; 58.5 27 0.00093 20.9 6.2 33 30-63 127-177 (322)
277 1kv9_A Type II quinohemoprotei 58.2 41 0.0014 22.9 6.5 30 38-68 309-341 (668)
278 1flg_A Protein (quinoprotein e 57.8 21 0.0007 24.1 4.7 32 38-70 331-365 (582)
279 3a9g_A Putative uncharacterize 57.3 18 0.0006 22.7 4.2 37 23-62 23-59 (354)
280 2wg3_C Hedgehog-interacting pr 55.8 15 0.00053 24.2 3.8 29 30-59 15-44 (463)
281 1bpo_A Protein (clathrin); cla 54.4 48 0.0016 22.5 6.2 42 31-73 261-302 (494)
282 3ei3_A DNA damage-binding prot 53.9 65 0.0022 23.9 7.4 38 28-66 553-597 (1158)
283 3kya_A Putative phosphatase; s 51.3 32 0.0011 23.1 4.8 29 29-58 310-339 (496)
284 3kya_A Putative phosphatase; s 49.6 29 0.001 23.2 4.4 39 30-69 140-180 (496)
285 2hc5_A ORF 99, hypothetical pr 48.5 20 0.00069 19.4 2.9 17 53-69 71-87 (117)
286 1npe_A Nidogen, entactin; glyc 48.0 38 0.0013 19.6 9.7 32 29-61 79-111 (267)
287 4hw6_A Hypothetical protein, I 44.4 42 0.0014 21.6 4.5 27 32-59 276-303 (433)
288 1ukf_A Avirulence protein AVRP 42.7 24 0.00083 20.8 2.8 36 27-63 117-153 (188)
289 1w6s_A Methanol dehydrogenase 42.5 40 0.0014 22.9 4.3 30 38-68 318-350 (599)
290 4a9v_A PHOX; hydrolase, beta-p 41.4 25 0.00085 24.4 3.1 19 28-46 530-548 (592)
291 4a2l_A BT_4663, two-component 40.7 83 0.0028 21.6 5.7 35 28-63 405-439 (795)
292 2ad6_A Methanol dehydrogenase 40.2 44 0.0015 22.4 4.2 31 38-69 311-344 (571)
293 1cru_A Protein (soluble quinop 38.5 81 0.0028 20.5 5.8 24 28-51 404-428 (454)
294 1q47_A Semaphorin 3A; beta pro 37.7 35 0.0012 22.8 3.4 27 28-55 461-487 (495)
295 1tl2_A L10, protein (tachylect 35.1 48 0.0016 20.2 3.4 29 29-60 41-69 (236)
296 2be1_A Serine/threonine-protei 32.5 59 0.002 20.6 3.7 28 41-69 11-38 (339)
297 1zso_A Hypothetical protein; s 32.4 73 0.0025 18.2 6.1 30 31-61 112-141 (164)
298 2jra_A Protein RPA2121; domain 31.5 50 0.0017 16.1 2.6 20 26-45 47-66 (67)
299 4gz8_A Semaphorin-3A; multi-do 31.1 53 0.0018 23.0 3.5 28 27-55 468-495 (667)
300 2xbg_A YCF48-like protein; pho 28.0 1E+02 0.0036 18.6 5.6 31 26-57 160-190 (327)
301 3zwu_A Alkaline phosphatase PH 26.8 62 0.0021 22.2 3.2 19 28-46 530-548 (592)
302 3rd7_A Acyl-COA thioesterase; 25.9 16 0.00055 22.4 0.2 24 31-55 260-283 (286)
303 1n7d_A LDL receptor, low-densi 25.7 1.7E+02 0.0057 20.2 5.5 30 30-60 541-571 (699)
304 2ldu_A Heat shock factor prote 25.5 53 0.0018 17.8 2.3 13 33-45 36-48 (125)
305 3elq_A Arylsulfate sulfotransf 25.4 1.7E+02 0.0058 20.2 5.4 39 30-71 356-395 (571)
306 2loj_A Putative cytoplasmic pr 25.3 43 0.0015 16.1 1.6 20 26-45 43-62 (63)
307 3mwp_A Nucleoprotein; structur 25.0 11 0.00039 25.4 -0.6 21 45-66 162-182 (577)
308 4sgb_I Potato inhibitor, PCI-1 24.0 50 0.0017 15.1 1.6 16 35-50 15-30 (51)
309 3u0a_A Acyl-COA thioesterase I 23.9 25 0.00087 21.5 0.8 26 30-56 252-277 (285)
310 2oqj_C Peptide 2G12.1 (ACPPSHV 22.4 47 0.0016 12.6 1.4 13 54-66 6-18 (26)
311 3v65_B Low-density lipoprotein 20.9 1.6E+02 0.0056 18.3 7.6 39 28-68 288-326 (386)
312 3d8d_A Amyloid beta A4 precurs 20.7 1.3E+02 0.0043 17.0 4.0 28 40-68 54-81 (148)
No 1
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.53 E-value=1.3e-13 Score=86.94 Aligned_cols=65 Identities=22% Similarity=0.343 Sum_probs=57.0
Q ss_pred eeeEEEcccCCcCCCCCcE----EecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPV----TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~----~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
++ +||+.+.. ... .+.+|.+.|++++|+|+|++|++++.|++ |++||+++++++..+.+|...+.
T Consensus 105 v~-lWd~~~~~-----~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~-i~iwd~~~~~~~~~~~~h~~~V~ 173 (344)
T 4gqb_B 105 VE-LWELDENE-----TLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDIC-IKVWDLAQQVVLSSYRAHAAQVT 173 (344)
T ss_dssp EE-EEEECTTS-----SCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCCSSCEE
T ss_pred EE-EEeccCCC-----ceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCe-EEEEECCCCcEEEEEcCcCCceE
Confidence 56 89998765 333 34489999999999999999999999999 99999999999999999988775
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.51 E-value=2.1e-13 Score=84.98 Aligned_cols=68 Identities=18% Similarity=0.263 Sum_probs=60.8
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW 78 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w 78 (78)
+. +||+++.. ...++.+|...|.+++|+|+|++|++++.|++ |++||++++.++..+.+|..++. +.|
T Consensus 230 i~-iwd~~~~~-----~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~-v~iwd~~~~~~~~~~~~h~~~v~~v~~ 298 (321)
T 3ow8_A 230 IK-IYDVQHAN-----LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS-VKVWDVGTRTCVHTFFDHQDQVWGVKY 298 (321)
T ss_dssp EE-EEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred EE-EEECCCcc-----eeEEEcCCCCceEEEEECCCCCEEEEEeCCCc-EEEEeCCCCEEEEEEcCCCCcEEEEEE
Confidence 56 89998765 78889999999999999999999999999999 99999999999999998887765 443
No 3
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.49 E-value=2.9e-13 Score=85.42 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=56.0
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCC-CEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTG-TMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW 78 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg-~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w 78 (78)
++ +||+++.. +++++.+|.+.|++++|+|+| ++|++++.|++ |++||+++++++ .+.+|.+.++ +.|
T Consensus 239 v~-~wd~~~~~-----~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~-i~vwd~~~~~~~-~~~~H~~~V~~v~~ 307 (344)
T 4gqb_B 239 VS-LVDTKSTS-----CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS-LAVLDSSLSELF-RSQAHRDFVRDATW 307 (344)
T ss_dssp EE-EEESCC-------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTCCEEE-EECCCSSCEEEEEE
T ss_pred EE-EEECCCCc-----EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe-EEEEECCCCcEE-EEcCCCCCEEEEEE
Confidence 56 89998776 899999999999999999998 57999999999 999999988764 5677877766 544
No 4
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.47 E-value=1.2e-13 Score=87.41 Aligned_cols=51 Identities=16% Similarity=0.202 Sum_probs=45.2
Q ss_pred eeeEEEcccCCcCCCCCcEEe-cCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTI-NAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK 61 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~-~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~ 61 (78)
++ |||+.+.. +++++ .+|.++|++++|||||++|+|++.|++ |||||+...
T Consensus 293 V~-iwd~~~~~-----~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~t-vrvw~ip~~ 344 (365)
T 4h5i_A 293 IA-LVKLKDLS-----MSKIFKQAHSFAITEVTISPDSTYVASVSAANT-IHIIKLPLN 344 (365)
T ss_dssp EE-EEETTTTE-----EEEEETTSSSSCEEEEEECTTSCEEEEEETTSE-EEEEECCTT
T ss_pred EE-EEECCCCc-----EEEEecCcccCCEEEEEECCCCCEEEEEeCCCe-EEEEEcCCC
Confidence 56 99998775 77775 799999999999999999999999999 999998643
No 5
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.47 E-value=2.6e-13 Score=84.15 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=59.2
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
+. +||+............++.+|..+|.+++|+|+|++|++++.|++ |++||+++++.+..+.+|..++.
T Consensus 42 v~-~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~-v~~wd~~~~~~~~~~~~h~~~v~ 111 (319)
T 3frx_A 42 LI-SWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKT-LRLWDVATGETYQRFVGHKSDVM 111 (319)
T ss_dssp EE-EEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECCSSCEE
T ss_pred EE-EecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCE-EEEEECCCCCeeEEEccCCCcEE
Confidence 45 898875432212357788999999999999999999999999999 99999999999999999887765
No 6
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.46 E-value=4.8e-13 Score=83.32 Aligned_cols=68 Identities=16% Similarity=0.251 Sum_probs=60.3
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW 78 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w 78 (78)
+. +||+++.. ...++.+|..+|.+++|+|+|++|++++.|+. |++||++++..+..+.+|..++. +.|
T Consensus 188 i~-iwd~~~~~-----~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~h~~~v~~~~~ 256 (321)
T 3ow8_A 188 IN-IFDIATGK-----LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY-IKIYDVQHANLAGTLSGHASWVLNVAF 256 (321)
T ss_dssp EE-EEETTTTE-----EEEEECCCSSCCCEEEECTTSCEEEEECTTSC-EEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred EE-EEECCCCc-----EEEEEcccCCceeEEEEcCCCCEEEEEcCCCe-EEEEECCCcceeEEEcCCCCceEEEEE
Confidence 45 89998765 88899999999999999999999999999999 99999999999999998887765 443
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.45 E-value=1.2e-12 Score=80.54 Aligned_cols=65 Identities=18% Similarity=0.322 Sum_probs=58.6
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
++ +||+++.. +..++.+|...|.+++|+|++..|++++.|+. |++||+++++++..+..+...+.
T Consensus 210 i~-iWd~~~~~-----~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~-i~iWd~~~~~~~~~~~~~~~~~~ 274 (304)
T 2ynn_A 210 IK-IWDYQTKS-----CVATLEGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNSSTYKVEKTLNVGLERSW 274 (304)
T ss_dssp EE-EEETTTTE-----EEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTTCCEEEEECCSSSSEE
T ss_pred EE-EEeCCCCc-----cceeeCCCCCCEEEEEECCCCCEEEEEcCCCe-EEEEECCCCceeeeccCCCccEE
Confidence 56 89998765 88999999999999999999999999999999 99999999999999987766543
No 8
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.44 E-value=9.9e-13 Score=82.06 Aligned_cols=65 Identities=11% Similarity=0.260 Sum_probs=59.3
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
++ +||+.+.. ...++.+|.++|.+++|+|++++|++++.|+. |++||++++.++..+.+|..+++
T Consensus 166 i~-~wd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~-v~~wd~~~~~~~~~~~~h~~~v~ 230 (340)
T 1got_B 166 CA-LWDIETGQ-----QTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS-AKLWDVREGMCRQTFTGHESDIN 230 (340)
T ss_dssp EE-EEETTTTE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCSEEEEECCCSSCEE
T ss_pred EE-EEECCCCc-----EEEEEcCCCCceEEEEECCCCCEEEEEeCCCc-EEEEECCCCeeEEEEcCCcCCEE
Confidence 56 89998765 78889999999999999999999999999999 99999999999999998887765
No 9
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.43 E-value=1.2e-12 Score=80.61 Aligned_cols=65 Identities=14% Similarity=0.227 Sum_probs=56.6
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC-cEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK-VQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~-~~~~~~~~~~~~~~ 75 (78)
++ +||+.+.. ....+.+|.+.|.+++|+|++++|++++.|++ |++||++++ .....+.+|..++.
T Consensus 79 i~-vwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~-v~lWd~~~~~~~~~~~~~h~~~v~ 144 (304)
T 2ynn_A 79 IR-VFNYNTGE-----KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT-VKLWNWENNWALEQTFEGHEHFVM 144 (304)
T ss_dssp EE-EEETTTCC-----EEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEEGGGTTEEEEEECCCCSCEE
T ss_pred EE-EEECCCCc-----EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCe-EEEEECCCCcchhhhhcccCCcEE
Confidence 56 89988775 88899999999999999999999999999999 999999887 45567777777665
No 10
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.43 E-value=5.9e-13 Score=85.15 Aligned_cols=65 Identities=22% Similarity=0.312 Sum_probs=59.6
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
+. +||+++.. +..++.+|.+.|.+++|+|+|++|++++.|+. |++||+++++++..+.+|...+.
T Consensus 320 i~-iwd~~~~~-----~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~-i~vwd~~~~~~~~~~~~h~~~v~ 384 (410)
T 1vyh_C 320 IK-MWDVSTGM-----CLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKNKRCMKTLNAHEHFVT 384 (410)
T ss_dssp EE-EEETTTTE-----EEEEEECCSSCEEEEEECSSSSCEEEEETTTE-EEEECCTTSCCCEEEECCSSCEE
T ss_pred EE-EEECCCCc-----eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCceEEEEcCCCCcEE
Confidence 56 89998775 88899999999999999999999999999999 99999999999999998887765
No 11
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.43 E-value=1.1e-12 Score=81.28 Aligned_cols=67 Identities=22% Similarity=0.378 Sum_probs=57.4
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEEe
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLY 77 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~ 77 (78)
++ +||+.+.. ....+.+|..+|++++|+|+|++|++++.|+. |++||+++++.+..+..+.....++
T Consensus 178 i~-~wd~~~~~-----~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~v~~~~ 244 (319)
T 3frx_A 178 VK-AWNLNQFQ-----IEADFIGHNSNINTLTASPDGTLIASAGKDGE-IMLWNLAAKKAMYTLSAQDEVFSLA 244 (319)
T ss_dssp EE-EEETTTTE-----EEEEECCCCSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEECCSCEEEEE
T ss_pred EE-EEECCcch-----hheeecCCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEecCCCcEEEEE
Confidence 45 89987765 77888999999999999999999999999999 9999999999998888664443344
No 12
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.43 E-value=7.9e-13 Score=84.54 Aligned_cols=65 Identities=15% Similarity=0.327 Sum_probs=59.4
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
+. +||+.+.. ..+++.+|.++|.+++|+|+|++|++++.|++ |++||+.++.++..+.+|...+.
T Consensus 132 i~-vwd~~~~~-----~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~-i~iwd~~~~~~~~~~~~h~~~V~ 196 (410)
T 1vyh_C 132 IK-VWDYETGD-----FERTLKGHTDSVQDISFDHSGKLLASCSADMT-IKLWDFQGFECIRTMHGHDHNVS 196 (410)
T ss_dssp EE-EEETTTCC-----CCEEECCCSSCEEEEEECTTSSEEEEEETTSC-CCEEETTSSCEEECCCCCSSCEE
T ss_pred EE-EEECCCCc-----EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCe-EEEEeCCCCceeEEEcCCCCCEE
Confidence 56 89988775 88999999999999999999999999999999 99999999999999998887765
No 13
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.42 E-value=1.5e-12 Score=82.36 Aligned_cols=73 Identities=12% Similarity=0.078 Sum_probs=57.2
Q ss_pred eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEe-eCCCCCeE-EeC
Q psy1940 3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVEL-RRGSDPAT-LYW 78 (78)
Q Consensus 3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~-~~~~~~~~-~~w 78 (78)
++. +||+...... ....+.+.+|..+|++++|||||++||+|+.|++ |+|||+++++++..+ .+|..+++ ++|
T Consensus 246 ~i~-~~~~~~~~~~-~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~-V~iwd~~~~~~~~~~~~gH~~~V~~v~f 320 (365)
T 4h5i_A 246 VLT-KISIKSGNTS-VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNS-IALVKLKDLSMSKIFKQAHSFAITEVTI 320 (365)
T ss_dssp EEE-EEEEETTEEE-EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSC-EEEEETTTTEEEEEETTSSSSCEEEEEE
T ss_pred EEe-ecccccceec-ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCE-EEEEECCCCcEEEEecCcccCCEEEEEE
Confidence 455 6777654310 0134567789999999999999999999999999 999999999999886 57888776 543
No 14
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.42 E-value=2.8e-12 Score=77.98 Aligned_cols=65 Identities=15% Similarity=0.236 Sum_probs=56.0
Q ss_pred eeeEEEcccCCcCCCCCcEEec--CCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTIN--AHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~--~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
+. |||+.++. +.+++. +|...|.+++|+|+|++|++|+.|+. |++||+++++++..+.+|...+.
T Consensus 47 V~-iWd~~tg~-----~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~-v~iw~~~~~~~~~~~~~h~~~~~ 113 (318)
T 4ggc_A 47 VY-LWSASSGD-----ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE-VQLWDVQQQKRLRNMTSHSARVG 113 (318)
T ss_dssp EE-EEETTTCC-----EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECCSSCEE
T ss_pred EE-EEECCCCC-----EEEEEEecCCCCeEEEEEECCCCCEEEEEECCCc-EEEeecCCceeEEEecCccceEE
Confidence 45 89988765 666664 67888999999999999999999999 99999999999999998876543
No 15
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.42 E-value=4.8e-13 Score=81.33 Aligned_cols=51 Identities=20% Similarity=0.418 Sum_probs=46.6
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK 61 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~ 61 (78)
+. +||+.+.. .++++.+|.++|++++|+|||++|+|++.|++ |++||+.+.
T Consensus 266 i~-iwd~~~~~-----~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~-v~iWd~~~~ 316 (318)
T 4ggc_A 266 LV-IWKYPTMA-----KVAELKGHTSRVLSLTMSPDGATVASAAADET-LRLWRCFEL 316 (318)
T ss_dssp EE-EEETTTCC-----EEEEECCCSSCEEEEEECTTSSCEEEEETTTE-EEEECCSCC
T ss_pred EE-EEECCCCc-----EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCe-EEEEECCCC
Confidence 55 89998776 89999999999999999999999999999999 999998754
No 16
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.42 E-value=2.1e-12 Score=82.38 Aligned_cols=65 Identities=15% Similarity=0.236 Sum_probs=56.0
Q ss_pred eeeEEEcccCCcCCCCCcEEec--CCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTIN--AHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~--~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
+. |||+.++. ..+.+. +|...|++++|+|||++|++|+.|+. |++||+.+++++..+.+|...+.
T Consensus 127 V~-lWd~~tg~-----~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~-v~iWd~~~~~~~~~~~~h~~~v~ 193 (420)
T 4gga_A 127 VY-LWSASSGD-----ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE-VQLWDVQQQKRLRNMTSHSARVG 193 (420)
T ss_dssp EE-EEETTTCC-----EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCCSSCEE
T ss_pred EE-EEECCCCC-----EEEEEEecCCCCcEEEEEECCCCCEEEEEECCCe-EEEEEcCCCcEEEEEeCCCCceE
Confidence 45 89988765 555554 67889999999999999999999999 99999999999999998877654
No 17
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.41 E-value=1e-12 Score=80.57 Aligned_cols=55 Identities=24% Similarity=0.275 Sum_probs=46.8
Q ss_pred CcEEecCCccCEEEEEECCC-CCEEEEEcCCCCEEEEeeCCCC-----cEEEEeeCCCCCeE
Q psy1940 20 SPVTINAHQSELACLALNQT-GTMIATASSKGTLIRVWDTLKK-----VQLVELRRGSDPAT 75 (78)
Q Consensus 20 ~~~~~~~h~~~i~~v~fs~d-g~~l~s~~~d~~~i~i~d~~~~-----~~~~~~~~~~~~~~ 75 (78)
...+|++|.++|++|+|+|+ +++|+||+.|++ |++||+.++ .+...+++|..++.
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~-i~vWd~~~~~~~~~~~~~~l~~h~~~V~ 90 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKT-IIMWKLTRDETNYGIPQRALRGHSHFVS 90 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSC-EEEEEECCSSSCSEEEEEEECCCSSCEE
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCe-EEEEECCCCCcccceeeEEEeCCCCCEE
Confidence 55679999999999999997 689999999999 999998764 35677788877765
No 18
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.40 E-value=2.7e-12 Score=80.08 Aligned_cols=70 Identities=17% Similarity=0.181 Sum_probs=58.8
Q ss_pred eeeEEEcccCCcC--CCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELS--SSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~--~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
++ +||+...... .......+.+|..+|.+++|+|++.++++++.|++ |++||+++++.+..+.+|..++.
T Consensus 51 v~-iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~-v~lwd~~~~~~~~~~~~h~~~v~ 122 (343)
T 2xzm_R 51 VM-IWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKT-LRLWDLRTGTTYKRFVGHQSEVY 122 (343)
T ss_dssp EE-EEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSE-EEEEETTSSCEEEEEECCCSCEE
T ss_pred EE-EEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCc-EEEEECCCCcEEEEEcCCCCcEE
Confidence 56 8998754311 11246778899999999999999999999999999 99999999999999999888765
No 19
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.40 E-value=3.9e-12 Score=80.01 Aligned_cols=58 Identities=34% Similarity=0.543 Sum_probs=50.5
Q ss_pred cEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee-C-CCCCeE-EeC
Q psy1940 21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR-R-GSDPAT-LYW 78 (78)
Q Consensus 21 ~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~-~-~~~~~~-~~w 78 (78)
..++.+|.++|.+++|+|+|++|++++.|++.|++||+++++++..++ + |..++. +.|
T Consensus 188 ~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~ 248 (355)
T 3vu4_A 188 GVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKW 248 (355)
T ss_dssp CEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEE
T ss_pred cEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEE
Confidence 788999999999999999999999999999329999999999999998 4 666655 443
No 20
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.39 E-value=2.9e-12 Score=78.48 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=57.1
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATL 76 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~ 76 (78)
++ +||+++.. ....+.+|.++|++++|+|+|++|++++.|+. |++||+++++.+..+.++.....+
T Consensus 197 i~-i~d~~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~v~~~ 262 (340)
T 4aow_A 197 VK-VWNLANCK-----LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ-AMLWDLNEGKHLYTLDGGDIINAL 262 (340)
T ss_dssp EE-EEETTTTE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEECSSCEEEE
T ss_pred EE-EEECCCCc-----eeeEecCCCCcEEEEEECCCCCEEEEEeCCCe-EEEEEeccCceeeeecCCceEEee
Confidence 45 88988765 88889999999999999999999999999999 999999999999888876443334
No 21
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.39 E-value=5e-12 Score=77.47 Aligned_cols=65 Identities=28% Similarity=0.444 Sum_probs=59.3
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
++ +||+.+.. ....+.+|...|.+++|+|++++|++++.|+. |++||+++++.+..+..|..++.
T Consensus 89 i~-vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~v~ 153 (312)
T 4ery_A 89 LK-IWDVSSGK-----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-VRIWDVKTGKCLKTLPAHSDPVS 153 (312)
T ss_dssp EE-EEETTTCC-----EEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTTCCEEEEECCCSSCEE
T ss_pred EE-EEECCCCc-----EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEECCCCEEEEEecCCCCcEE
Confidence 56 89998765 88899999999999999999999999999999 99999999999999998877765
No 22
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.39 E-value=3.3e-12 Score=80.79 Aligned_cols=61 Identities=25% Similarity=0.324 Sum_probs=54.2
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG 70 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~ 70 (78)
+. +||++... ....++.+|.+.|++++|+|+|++|++++.|++ |++||++++..+..+..+
T Consensus 230 v~-~wd~~~~~----~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-i~lwd~~~~~~~~~~~~~ 290 (380)
T 3iz6_a 230 VR-LWDLRITS----RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT-CRLFDMRTGHQLQVYNRE 290 (380)
T ss_dssp EE-EEETTTTC----CCCEEECCCSSCCCEEEECTTSSEEEEECSSSC-EEEEETTTTEEEEEECCC
T ss_pred EE-EEECCCCC----cceEEECCcCCCeEEEEEecCCCeEEEEcCCCe-EEEEECCCCcEEEEeccc
Confidence 56 89998543 478899999999999999999999999999999 999999999988887654
No 23
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.39 E-value=3.3e-12 Score=83.39 Aligned_cols=63 Identities=22% Similarity=0.312 Sum_probs=55.1
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
+. +||. +. ++.+++.+|.++|.+++|+|||++|++++.|+. |++||. +++.+..+.+|..++.
T Consensus 40 v~-iWd~-~~-----~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~-i~vWd~-~~~~~~~~~~~~~~v~ 102 (577)
T 2ymu_A 40 VK-LWNR-NG-----QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKLWNR-NGQLLQTLTGHSSSVR 102 (577)
T ss_dssp EE-EECT-TS-----CEEEEEECCSSCEEEEEECTTSSEEEEEETTSC-EEEEET-TSCEEEEECCCSSCEE
T ss_pred EE-EEEC-CC-----CEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCE-EEEEEC-CCCEEEEEECCCCCEE
Confidence 45 8984 33 388999999999999999999999999999999 999995 6788899998887765
No 24
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.38 E-value=8.3e-13 Score=84.28 Aligned_cols=58 Identities=17% Similarity=0.324 Sum_probs=48.6
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~ 68 (78)
+. +||+.+.. .+.++.+|.++|.+++|+|||++|+|++.|++ |++||+.+..+....+
T Consensus 346 I~-iwd~~~~~-----~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~t-vriWdv~~~~~~~~~~ 403 (420)
T 4gga_A 346 LV-IWKYPTMA-----KVAELKGHTSRVLSLTMSPDGATVASAAADET-LRLWRCFELDPARRRE 403 (420)
T ss_dssp EE-EEETTTCC-----EEEEECCCSSCEEEEEECTTSSCEEEEETTTE-EEEECCSCSSCC----
T ss_pred EE-EEECCCCc-----EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCe-EEEEECCCCCccchhh
Confidence 55 89988775 89999999999999999999999999999999 9999998765554444
No 25
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.38 E-value=3.3e-12 Score=80.52 Aligned_cols=67 Identities=21% Similarity=0.281 Sum_probs=56.8
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCC-CEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTG-TMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW 78 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg-~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w 78 (78)
+. +||+++.. ..+++.+|..+|++++|+|++ ++|++++.|++ |++||+++++.+..+ +|.++++ ++|
T Consensus 251 i~-~wd~~~~~-----~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~-i~iwd~~~~~~~~~~-~H~~~V~~vaf 319 (357)
T 4g56_B 251 VS-LVNIKNPD-----SAQTSAVHSQNITGLAYSYHSSPFLASISEDCT-VAVLDADFSEVFRDL-SHRDFVTGVAW 319 (357)
T ss_dssp EE-EEESSCGG-----GCEEECCCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTSCEEEEEC-CCSSCEEEEEE
T ss_pred ee-EEECCCCc-----EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE-EEEEECCCCcEeEEC-CCCCCEEEEEE
Confidence 56 89998776 889999999999999999987 57999999999 999999999887665 5666665 554
No 26
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.37 E-value=1.6e-13 Score=87.31 Aligned_cols=73 Identities=10% Similarity=0.134 Sum_probs=56.0
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECC--------CCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQ--------TGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~--------dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
++ |||+...+.........+.+|.+.|++++|+| ||++|++++.|++ |++||++++.++..+..|+.++.
T Consensus 113 v~-lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t-v~~Wd~~~~~~~~~~~~~~~~v~ 190 (393)
T 4gq1_A 113 VR-LIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT-LIIWRLTDEGPILAGYPLSSPGI 190 (393)
T ss_dssp EE-EEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE-EEEEEEETTEEEEEEEECSSCEE
T ss_pred EE-EEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe-EEEEECCCCceeeeecCCCCCcE
Confidence 56 89987764211123344679999999999998 8999999999999 99999998887777766666654
Q ss_pred -EeC
Q psy1940 76 -LYW 78 (78)
Q Consensus 76 -~~w 78 (78)
++|
T Consensus 191 ~v~~ 194 (393)
T 4gq1_A 191 SVQF 194 (393)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 554
No 27
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.37 E-value=7e-12 Score=76.81 Aligned_cols=65 Identities=18% Similarity=0.265 Sum_probs=58.5
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
++ +||+.+.. ....+.+|..+|.+++|+|+|++|++++.|+. |++||+++++++..+.+|...+.
T Consensus 47 i~-iw~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~-i~vwd~~~~~~~~~~~~~~~~v~ 111 (312)
T 4ery_A 47 IK-IWGAYDGK-----FEKTISGHKLGISDVAWSSDSNLLVSASDDKT-LKIWDVSSGKCLKTLKGHSNYVF 111 (312)
T ss_dssp EE-EEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEECCSSCEE
T ss_pred EE-EEeCCCcc-----cchhhccCCCceEEEEEcCCCCEEEEECCCCE-EEEEECCCCcEEEEEcCCCCCEE
Confidence 56 89987665 77889999999999999999999999999999 99999999999999998877765
No 28
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.36 E-value=7.4e-12 Score=84.25 Aligned_cols=72 Identities=14% Similarity=0.224 Sum_probs=60.7
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-Ee
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LY 77 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~ 77 (78)
+. +||+.............+.+|...|.+++|+|+|++|++++.|+. |++||+.++..+..+.+|..++. ++
T Consensus 407 i~-~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~-v~vwd~~~~~~~~~~~~h~~~v~~~~ 479 (694)
T 3dm0_A 407 II-LWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE-LRLWDLAAGVSTRRFVGHTKDVLSVA 479 (694)
T ss_dssp EE-EEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred EE-EEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc-EEEEECCCCcceeEEeCCCCCEEEEE
Confidence 45 899876543223356778899999999999999999999999999 99999999999999999888775 44
No 29
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.36 E-value=5.1e-12 Score=84.29 Aligned_cols=68 Identities=16% Similarity=0.258 Sum_probs=57.5
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee-------CCCCCeE-
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR-------RGSDPAT- 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~-------~~~~~~~- 75 (78)
++ +||..... ...++.+|.+.|++++|+|||++|++++.|++ |++||+.+++.+..+. +|..++.
T Consensus 172 v~-lwd~~~~~-----~~~~l~~H~~~V~~v~fspdg~~las~s~D~~-i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~ 244 (611)
T 1nr0_A 172 VA-IFEGPPFK-----FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT-IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFG 244 (611)
T ss_dssp EE-EEETTTBE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCEEEECBCTTSSSCSSSSCEEE
T ss_pred EE-EEECCCCe-----EeeeeccccCceEEEEECCCCCEEEEEECCCc-EEEEECCCCcEeeeeccccccccccCCCEEE
Confidence 45 88876554 78889999999999999999999999999999 9999999999988884 5666654
Q ss_pred EeC
Q psy1940 76 LYW 78 (78)
Q Consensus 76 ~~w 78 (78)
+.|
T Consensus 245 v~~ 247 (611)
T 1nr0_A 245 LTW 247 (611)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 30
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.35 E-value=3.9e-12 Score=80.15 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=52.1
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
++ +||+.+.... ........+|.++|.+++|+|+|++|++++.|+. |++||+++++.+..+++|...++
T Consensus 117 v~-lWd~~~~~~~-~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~-v~iwd~~~~~~~~~~~~h~~~v~ 185 (357)
T 4g56_B 117 VE-LWEILEKESL-LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFS-VKVWDLSQKAVLKSYNAHSSEVN 185 (357)
T ss_dssp EE-EC---------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTTTEEEEEECCCSSCEE
T ss_pred EE-Eeecccccee-EEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCe-EEEEECCCCcEEEEEcCCCCCEE
Confidence 56 8998776421 1123345589999999999999999999999999 99999999999999998887766
No 31
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.35 E-value=1.1e-11 Score=82.61 Aligned_cols=65 Identities=17% Similarity=0.301 Sum_probs=54.3
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC--cEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK--VQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~--~~~~~~~~~~~~~~ 75 (78)
+. +||+.+.. ...++.+|...|.+++|+|||++||+++.|++ |++||+.++ .....+++|..++.
T Consensus 41 v~-l~~~~~~~-----~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~-v~lWd~~~~~~~~~~~~~~~~~~v~ 107 (611)
T 1nr0_A 41 VY-TVPVGSLT-----DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGN-VRIWDTTQTTHILKTTIPVFSGPVK 107 (611)
T ss_dssp EE-EEETTCSS-----CCEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEESSSTTCCEEEEEECSSSCEE
T ss_pred EE-EecCCCcc-----cCeEecCCCCceEEEEECCCCcEEEEEeCCCC-EEEeECCCCcceeeEeecccCCceE
Confidence 45 88987655 88899999999999999999999999999999 999998754 34566777766654
No 32
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.34 E-value=4.2e-12 Score=80.06 Aligned_cols=68 Identities=16% Similarity=0.182 Sum_probs=59.1
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW 78 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w 78 (78)
+. +||+.... ....+.+|.++|.+++|+|++++|++++.|+. |++||+++++.+..+.+|..++. +.|
T Consensus 121 i~-iwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~-i~iwd~~~~~~~~~~~~h~~~v~~~~~ 189 (420)
T 3vl1_A 121 IK-VLDSNFNL-----QREIDQAHVSEITKLKFFPSGEALISSSQDMQ-LKIWSVKDGSNPRTLIGHRATVTDIAI 189 (420)
T ss_dssp EE-EECTTSCE-----EEEETTSSSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCCCEEEECCSSCEEEEEE
T ss_pred EE-EEeCCCcc-----eeeecccccCccEEEEECCCCCEEEEEeCCCe-EEEEeCCCCcCceEEcCCCCcEEEEEE
Confidence 45 88887654 67777899999999999999999999999999 99999999999999998887765 443
No 33
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.34 E-value=1.6e-11 Score=77.25 Aligned_cols=65 Identities=17% Similarity=0.285 Sum_probs=58.4
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECC--CCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQ--TGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~--dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
++ +||+.+.. ...++.+|...|.+++|+| +|+.|++++.|+. |++||++++.++..+..|..+++
T Consensus 178 v~-lwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~-v~~wd~~~~~~~~~~~~h~~~v~ 244 (354)
T 2pbi_B 178 CA-LWDVESGQ-----LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKK-AMVWDMRSGQCVQAFETHESDVN 244 (354)
T ss_dssp EE-EEETTTCC-----EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSC-EEEEETTTCCEEEEECCCSSCEE
T ss_pred EE-EEeCCCCe-----EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCe-EEEEECCCCcEEEEecCCCCCeE
Confidence 56 89998775 8899999999999999987 5789999999999 99999999999999998887765
No 34
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.34 E-value=9.6e-12 Score=78.96 Aligned_cols=62 Identities=16% Similarity=0.329 Sum_probs=54.6
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSD 72 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~ 72 (78)
++ +||+.+.. ....+.+|...|.+++|+|+|++|++++.|+. |++||++++++...+..+..
T Consensus 147 i~-iwd~~~~~-----~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~-v~iwd~~~~~~~~~~~~~~~ 208 (393)
T 1erj_A 147 IR-IWDIENRK-----IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT-VRIWDLRTGQCSLTLSIEDG 208 (393)
T ss_dssp EE-EEETTTTE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECSSC
T ss_pred EE-EEECCCCc-----EEEEEccCCCCEEEEEEcCCCCEEEEecCCCc-EEEEECCCCeeEEEEEcCCC
Confidence 56 89987765 78889999999999999999999999999999 99999999988877765443
No 35
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.33 E-value=1.4e-11 Score=76.81 Aligned_cols=59 Identities=20% Similarity=0.310 Sum_probs=53.2
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~ 69 (78)
+. +||+++.. +..++.+|..+|++++|+|+|++|++++.|+. |++||++++..+..+..
T Consensus 208 v~-~wd~~~~~-----~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~-v~iwd~~~~~~~~~~~~ 266 (340)
T 1got_B 208 AK-LWDVREGM-----CRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYSH 266 (340)
T ss_dssp EE-EEETTTCS-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECC
T ss_pred EE-EEECCCCe-----eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc-EEEEECCCCcEEEEEcc
Confidence 56 89998765 88899999999999999999999999999999 99999999888777654
No 36
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.32 E-value=1.2e-11 Score=80.70 Aligned_cols=65 Identities=22% Similarity=0.299 Sum_probs=56.3
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-Ee
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LY 77 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~ 77 (78)
+. +||. +. ++.+.+.+|.++|++++|+|||++|++++.|+. |++||. +++++..+.+|..++. +.
T Consensus 491 i~-iw~~-~~-----~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~-v~lwd~-~~~~~~~~~~h~~~v~~~~ 556 (577)
T 2ymu_A 491 VK-LWNR-NG-----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWNR-NGQLLQTLTGHSSSVWGVA 556 (577)
T ss_dssp EE-EEET-TS-----CEEEEEECCSSCEEEEEECTTSSCEEEEETTSE-EEEECT-TSCEEEEEECCSSCEEEEE
T ss_pred EE-EEcC-CC-----CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCE-EEEEeC-CCCEEEEEcCCCCCEEEEE
Confidence 56 8884 33 488899999999999999999999999999999 999995 6889999999988875 44
No 37
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.32 E-value=1.6e-11 Score=76.39 Aligned_cols=73 Identities=18% Similarity=0.273 Sum_probs=50.4
Q ss_pred eeeEEEcccCCc--CCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCC----CcEEEEeeCCCCCeE-E
Q psy1940 4 LQCSQDLSSTEL--SSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLK----KVQLVELRRGSDPAT-L 76 (78)
Q Consensus 4 ~~~i~d~~~~~~--~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~----~~~~~~~~~~~~~~~-~ 76 (78)
++ +||+..... ...+...++.+|.++|.+++|+|+|++|++++.|++ |++||++. .+++..+.+|..++. +
T Consensus 82 v~-iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~-v~iwd~~~~~~~~~~~~~~~~h~~~v~~v 159 (330)
T 2hes_X 82 VS-IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKS-VWIWETDESGEEYECISVLQEHSQDVKHV 159 (330)
T ss_dssp EE-EEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSC-EEEEECCTTCCCCEEEEEECCCSSCEEEE
T ss_pred EE-EEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCE-EEEEeccCCCCCeEEEEEeccCCCceEEE
Confidence 56 898854321 112356788999999999999999999999999999 99999943 256777888877665 4
Q ss_pred eC
Q psy1940 77 YW 78 (78)
Q Consensus 77 ~w 78 (78)
.|
T Consensus 160 ~~ 161 (330)
T 2hes_X 160 IW 161 (330)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 38
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.31 E-value=2.2e-11 Score=74.91 Aligned_cols=67 Identities=12% Similarity=0.110 Sum_probs=56.8
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEEe
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLY 77 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~ 77 (78)
+. +||+.+.. ....+.+|.++|.+++|+|++++|++++.|+. |++||+.+++.+..+........+.
T Consensus 56 i~-vwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~v~~~~ 122 (369)
T 3zwl_B 56 AS-VWYSLNGE-----RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYS-IKLWDVSNGQCVATWKSPVPVKRVE 122 (369)
T ss_dssp EE-EEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETTTE-EEEEETTTCCEEEEEECSSCEEEEE
T ss_pred EE-EEeCCCch-----hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEeecCCCeEEEE
Confidence 45 89987765 88899999999999999999999999999999 9999999999988888433333344
No 39
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.31 E-value=1.6e-11 Score=78.62 Aligned_cols=65 Identities=17% Similarity=0.224 Sum_probs=59.7
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
+. +||+.+.. ....+.+|..+|.+++|+|+|+.+++++.|+. |++||+++++++..+.+|..++.
T Consensus 292 i~-vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~-i~vwd~~~~~~~~~~~~h~~~v~ 356 (464)
T 3v7d_B 292 LI-VWDVAQMK-----CLYILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLENGELMYTLQGHTALVG 356 (464)
T ss_dssp EE-EEETTTTE-----EEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEETTTTEEEEEECCCSSCEE
T ss_pred EE-EEECCCCc-----EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEECCCCcEEEEEeCCCCcEE
Confidence 55 89998765 88899999999999999999999999999999 99999999999999999888776
No 40
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.31 E-value=2.3e-11 Score=74.85 Aligned_cols=65 Identities=9% Similarity=0.196 Sum_probs=56.8
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECC-CCCEEEEEcCCCCEEEEeeCCCCcEEEEe---eCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQ-TGTMIATASSKGTLIRVWDTLKKVQLVEL---RRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~-dg~~l~s~~~d~~~i~i~d~~~~~~~~~~---~~~~~~~~ 75 (78)
+. +||+.+.. ....+.+|..+|.+++|+| +++.|++++.|+. |++||+++++.+..+ ..|...+.
T Consensus 97 i~-v~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~v~ 165 (366)
T 3k26_A 97 IR-IINPITMQ-----CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHA-LRLWNIQTDTLVAIFGGVEGHRDEVL 165 (366)
T ss_dssp EE-EECTTTCC-----EEEEEESCCSCEEEEEECSSCTTEEEEEETTSC-EEEEETTTTEEEEEECSTTSCSSCEE
T ss_pred EE-EEEchhce-----EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCe-EEEEEeecCeEEEEecccccccCcee
Confidence 45 89987765 7888999999999999999 9999999999999 999999999998888 55665554
No 41
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.31 E-value=1.7e-11 Score=77.97 Aligned_cols=65 Identities=15% Similarity=0.329 Sum_probs=56.6
Q ss_pred eeeEEEcccCCcCCCCCcEEecC--CccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee-CCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINA--HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR-RGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~--h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~-~~~~~~~ 75 (78)
+. +||+++.. ...++.+ |.++|.+++|+|++++|++++.|+. |++||++++.++..+. .|..++.
T Consensus 194 i~-iwd~~~~~-----~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~v~ 261 (437)
T 3gre_A 194 VI-IFDIRTLE-----RLQIIENSPRHGAVSSICIDEECCVLILGTTRGI-IDIWDIRFNVLIRSWSFGDHAPIT 261 (437)
T ss_dssp EE-EEETTTCC-----EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSC-EEEEETTTTEEEEEEBCTTCEEEE
T ss_pred EE-EEeCCCCe-----eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCe-EEEEEcCCccEEEEEecCCCCceE
Confidence 55 89998775 8888887 8999999999999999999999999 9999999999998886 5555544
No 42
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.30 E-value=2.3e-11 Score=74.62 Aligned_cols=67 Identities=15% Similarity=0.250 Sum_probs=53.9
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCC--CCEEEEEcCCCCEEEEeeCCCCc--EEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQT--GTMIATASSKGTLIRVWDTLKKV--QLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~d--g~~l~s~~~d~~~i~i~d~~~~~--~~~~~~~~~~~~~ 75 (78)
++ +||+.... .+...++.+|.++|.+++|+|+ |+.|++++.|++ |++||++++. .+..+..|..+++
T Consensus 33 v~-iw~~~~~~---~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~-v~iWd~~~~~~~~~~~~~~h~~~v~ 103 (297)
T 2pm7_B 33 IK-IFEVEGET---HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK-VMIWKEENGRWSQIAVHAVHSASVN 103 (297)
T ss_dssp EE-EEEBCSSC---BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTE-EEEEEBSSSCBCCCEEECCCSSCEE
T ss_pred EE-EEecCCCC---cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCE-EEEEEcCCCceEEEEEeecCCCcee
Confidence 56 89986432 2478899999999999999874 899999999999 9999998873 5566776766654
No 43
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.30 E-value=2.7e-11 Score=73.34 Aligned_cols=66 Identities=17% Similarity=0.243 Sum_probs=58.1
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-Ee
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LY 77 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~ 77 (78)
+. +||+++.. ....+.+|.++|.+++|+|+| .|++++.|+. |++||+++++.+..+..+..++. +.
T Consensus 207 i~-i~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~~~i~~~~ 273 (313)
T 3odt_A 207 IK-LVDMHTGD-----VLRTYEGHESFVYCIKLLPNG-DIVSCGEDRT-VRIWSKENGSLKQVITLPAISIWSVD 273 (313)
T ss_dssp EE-EEETTTCC-----EEEEEECCSSCEEEEEECTTS-CEEEEETTSE-EEEECTTTCCEEEEEECSSSCEEEEE
T ss_pred EE-EEECCchh-----hhhhhhcCCceEEEEEEecCC-CEEEEecCCE-EEEEECCCCceeEEEeccCceEEEEE
Confidence 56 89998765 888999999999999999999 6999999999 99999999999999988876654 44
No 44
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.30 E-value=1.7e-11 Score=75.37 Aligned_cols=71 Identities=17% Similarity=0.316 Sum_probs=58.7
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCcc------------CEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQS------------ELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGS 71 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~------------~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~ 71 (78)
+. +||+..... ......+.+|.. +|.+++|+|+|++|++++.|+. |++||+++++++..+..|.
T Consensus 240 i~-i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~ 315 (368)
T 3mmy_A 240 VA-IHYINPPNP--AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGR-FSFWDKDARTKLKTSEQLD 315 (368)
T ss_dssp EE-EEESSCSCH--HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSC-EEEEETTTTEEEEECCCCS
T ss_pred EE-EEecCCCCc--cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCe-EEEEECCCCcEEEEecCCC
Confidence 45 888876531 126777888876 7999999999999999999999 9999999999999999888
Q ss_pred CCeE-EeC
Q psy1940 72 DPAT-LYW 78 (78)
Q Consensus 72 ~~~~-~~w 78 (78)
.+++ +.|
T Consensus 316 ~~v~~~~~ 323 (368)
T 3mmy_A 316 QPISACCF 323 (368)
T ss_dssp SCEEEEEE
T ss_pred CCceEEEE
Confidence 7765 544
No 45
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.30 E-value=1.2e-11 Score=83.30 Aligned_cols=67 Identities=21% Similarity=0.360 Sum_probs=57.0
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEEe
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLY 77 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~ 77 (78)
+. +||+++.. ...++.+|.+.|++++|+|+|++|++++.|+. |++||+++++.+..+..+.....++
T Consensus 543 v~-vwd~~~~~-----~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~-i~iwd~~~~~~~~~~~~~~~v~~~~ 609 (694)
T 3dm0_A 543 VK-VWNLSNCK-----LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV-VLLWDLAEGKKLYSLEANSVIHALC 609 (694)
T ss_dssp EE-EEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSB-CEEEETTTTEEEECCBCSSCEEEEE
T ss_pred EE-EEECCCCc-----EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe-EEEEECCCCceEEEecCCCcEEEEE
Confidence 45 89998765 78889999999999999999999999999999 9999999999888877654333344
No 46
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.29 E-value=9.5e-12 Score=78.69 Aligned_cols=56 Identities=18% Similarity=0.266 Sum_probs=50.7
Q ss_pred CCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 19 SSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 19 ~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
.+.+++.+|.++|++++|+|+|++|++++.|++ |++||+.++..+..++.|...+.
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~-v~iWd~~~~~~~~~~~~h~~~v~ 112 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGR-LIVWNALTSQKTHAIKLHCPWVM 112 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSCEEEEETTSE-EEEEETTTTEEEEEEECCCTTCC
T ss_pred EEeecccccccEEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCccceEEecCCCCEE
Confidence 467889999999999999999999999999999 99999999999999988766543
No 47
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.29 E-value=2.8e-11 Score=75.67 Aligned_cols=70 Identities=17% Similarity=0.334 Sum_probs=55.1
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC---cEEEEeeCCCCCeE-EeC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK---VQLVELRRGSDPAT-LYW 78 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~---~~~~~~~~~~~~~~-~~w 78 (78)
+. +||+.... .++..++.+|.++|.+++|+|+|++|++++.|+. |++||++++ .++..+.+|...+. +.|
T Consensus 85 v~-iw~~~~~~---~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~-v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~ 158 (345)
T 3fm0_A 85 TC-IWKKNQDD---FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKS-VWVWEVDEEDEYECVSVLNSHTQDVKHVVW 158 (345)
T ss_dssp EE-EEEECCC----EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEECTTSCEEEEEEECCCCSCEEEEEE
T ss_pred EE-EEEccCCC---eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCe-EEEEECCCCCCeEEEEEecCcCCCeEEEEE
Confidence 45 88876543 1267888999999999999999999999999999 999999876 34566777776655 443
No 48
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.28 E-value=1.5e-11 Score=76.14 Aligned_cols=67 Identities=12% Similarity=0.167 Sum_probs=54.2
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECC--CCCEEEEEcCCCCEEEEeeCCCC--cEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQ--TGTMIATASSKGTLIRVWDTLKK--VQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~--dg~~l~s~~~d~~~i~i~d~~~~--~~~~~~~~~~~~~~ 75 (78)
++ +||+.+... ....++.+|.++|.+++|+| +|+.|++++.|++ |++||++++ ..+..+.+|..+++
T Consensus 37 v~-lwd~~~~~~---~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~-v~iWd~~~~~~~~~~~~~~h~~~V~ 107 (316)
T 3bg1_A 37 VK-IFDVRNGGQ---ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRK-VIIWREENGTWEKSHEHAGHDSSVN 107 (316)
T ss_dssp EE-EEEEETTEE---EEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSC-EEEECCSSSCCCEEEEECCCSSCCC
T ss_pred EE-EEEecCCCc---EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCE-EEEEECCCCcceEEEEccCCCCceE
Confidence 56 899876531 25678899999999999986 4899999999999 999999987 46677777776654
No 49
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.28 E-value=5.2e-11 Score=75.31 Aligned_cols=73 Identities=18% Similarity=0.336 Sum_probs=59.2
Q ss_pred eeeEEEcccCCcC--CCCCcEEecCCccCEEEEEECCCC-CEEEEEcCCCCEEEEeeCCCCcEEEEe--eCCCCCeE-Ee
Q psy1940 4 LQCSQDLSSTELS--SSSSPVTINAHQSELACLALNQTG-TMIATASSKGTLIRVWDTLKKVQLVEL--RRGSDPAT-LY 77 (78)
Q Consensus 4 ~~~i~d~~~~~~~--~~~~~~~~~~h~~~i~~v~fs~dg-~~l~s~~~d~~~i~i~d~~~~~~~~~~--~~~~~~~~-~~ 77 (78)
+. +||+.+.... ..+....+.+|...|.+++|+|+| +.|++++.|+. |++||+++++.+..+ ..|...+. +.
T Consensus 106 v~-vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 183 (402)
T 2aq5_A 106 VM-VWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV-ILVWDVGTGAAVLTLGPDVHPDTIYSVD 183 (402)
T ss_dssp EE-EEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC-EEEEETTTTEEEEEECTTTCCSCEEEEE
T ss_pred EE-EEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE-EEEEECCCCCccEEEecCCCCCceEEEE
Confidence 56 8998876310 013688899999999999999998 69999999999 999999999999998 66766655 44
Q ss_pred C
Q psy1940 78 W 78 (78)
Q Consensus 78 w 78 (78)
|
T Consensus 184 ~ 184 (402)
T 2aq5_A 184 W 184 (402)
T ss_dssp E
T ss_pred E
Confidence 3
No 50
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.28 E-value=4.2e-11 Score=74.87 Aligned_cols=59 Identities=22% Similarity=0.393 Sum_probs=53.8
Q ss_pred eeeeEEEcccCCcCCCCCcEEecC-------------CccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940 3 YLQCSQDLSSTELSSSSSPVTINA-------------HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68 (78)
Q Consensus 3 ~~~~i~d~~~~~~~~~~~~~~~~~-------------h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~ 68 (78)
.+. +||+++.. ....+.+ |..+|.+++|+|+|++|++++.|+. |++||+++++.+..+.
T Consensus 259 ~i~-i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 259 CIT-LYETEFGE-----RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK-LRFWDVKTKERITTLN 330 (397)
T ss_dssp EEE-EEETTTCC-----EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE-EEEEETTTTEEEEEEE
T ss_pred eEE-EEECCCCc-----ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCe-EEEEEcCCCceeEEEe
Confidence 356 89988765 7888888 9999999999999999999999999 9999999999999998
No 51
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.28 E-value=4.8e-11 Score=74.38 Aligned_cols=50 Identities=26% Similarity=0.409 Sum_probs=46.0
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLK 60 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~ 60 (78)
++ +||+++.. ...++.+|.++|.+++|+|+|++|++++.|+. |++||+..
T Consensus 100 v~-lwd~~~~~-----~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~-i~~wd~~~ 149 (343)
T 2xzm_R 100 LR-LWDLRTGT-----TYKRFVGHQSEVYSVAFSPDNRQILSAGAERE-IKLWNILG 149 (343)
T ss_dssp EE-EEETTSSC-----EEEEEECCCSCEEEEEECSSTTEEEEEETTSC-EEEEESSS
T ss_pred EE-EEECCCCc-----EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCE-EEEEeccC
Confidence 56 89998775 88899999999999999999999999999999 99999874
No 52
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.27 E-value=4.5e-11 Score=76.50 Aligned_cols=64 Identities=17% Similarity=0.299 Sum_probs=58.2
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
+. +||+.+.. ...++.+|.++|.+++|+|++ .|++++.|+. |++||+++++.+..+.+|..++.
T Consensus 144 i~-vwd~~~~~-----~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~-i~vwd~~~~~~~~~~~~h~~~v~ 207 (464)
T 3v7d_B 144 IR-VYDSINKK-----FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRT-VRVWDIKKGCCTHVFEGHNSTVR 207 (464)
T ss_dssp EE-EEETTTTE-----EEEEECCCSSCEEEEEECSTT-EEEEEETTSC-EEEEETTTTEEEEEECCCSSCEE
T ss_pred EE-EEECCCCc-----EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCC-EEEEECCCCcEEEEECCCCCccE
Confidence 56 89988775 888999999999999999988 9999999999 99999999999999998887765
No 53
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.27 E-value=1.3e-11 Score=76.98 Aligned_cols=70 Identities=19% Similarity=0.267 Sum_probs=51.7
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCc---EEEEeeCCCCCeE-EeC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKV---QLVELRRGSDPAT-LYW 78 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~---~~~~~~~~~~~~~-~~w 78 (78)
+. +||+..... +...++.+|.++|.+++|+|+|++|++++.|+. |++||+.++. ....+.+|..++. +.|
T Consensus 35 i~-iw~~~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~-v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 108 (377)
T 3dwl_C 35 VE-LYEQDGNGW---KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRN-AYVYEKRPDGTWKQTLVLLRLNRAATFVRW 108 (377)
T ss_dssp BC-EEEEETTEE---EECCCBCCCSSCEEEEEECTTTCCEEEEETTSS-EEEC------CCCCEEECCCCSSCEEEEEC
T ss_pred EE-EEEccCCce---EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCe-EEEEEcCCCCceeeeeEecccCCceEEEEE
Confidence 45 899876510 267778899999999999999999999999999 9999999877 6677777776665 544
No 54
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.27 E-value=4.5e-11 Score=75.15 Aligned_cols=59 Identities=17% Similarity=0.279 Sum_probs=52.7
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~ 69 (78)
+. +||+++.. +..++.+|...|++++|+|+|+.|++++.|++ |++||++++..+..+..
T Consensus 222 v~-~wd~~~~~-----~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-v~lwd~~~~~~~~~~~~ 280 (354)
T 2pbi_B 222 AM-VWDMRSGQ-----CVQAFETHESDVNSVRYYPSGDAFASGSDDAT-CRLYDLRADREVAIYSK 280 (354)
T ss_dssp EE-EEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECC
T ss_pred EE-EEECCCCc-----EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe-EEEEECCCCcEEEEEcC
Confidence 45 89998765 88899999999999999999999999999999 99999998887766654
No 55
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.26 E-value=5.2e-11 Score=75.58 Aligned_cols=68 Identities=16% Similarity=0.269 Sum_probs=53.8
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCc------------------cCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQ------------------SELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLV 65 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~------------------~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~ 65 (78)
++ +|++.++. ....+..|. ..|.+++|+|||++|++++.|+. |++||+.+++.+.
T Consensus 87 v~-i~~~~~g~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~-i~iwd~~~~~~~~ 159 (393)
T 1erj_A 87 TQ-VYRVSDGS-----LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL-IRIWDIENRKIVM 159 (393)
T ss_dssp EE-EEETTTCC-----EEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEE
T ss_pred EE-EEEecCCC-----EEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCe-EEEEECCCCcEEE
Confidence 45 78887654 555554443 24899999999999999999999 9999999999999
Q ss_pred EeeCCCCCeE-EeC
Q psy1940 66 ELRRGSDPAT-LYW 78 (78)
Q Consensus 66 ~~~~~~~~~~-~~w 78 (78)
.+.+|..++. +.|
T Consensus 160 ~~~~h~~~v~~~~~ 173 (393)
T 1erj_A 160 ILQGHEQDIYSLDY 173 (393)
T ss_dssp EECCCSSCEEEEEE
T ss_pred EEccCCCCEEEEEE
Confidence 9998887765 443
No 56
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.26 E-value=5.2e-11 Score=75.03 Aligned_cols=60 Identities=23% Similarity=0.412 Sum_probs=54.8
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG 70 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~ 70 (78)
+. +||+.+.. ....+.+|.++|.+++|+|+|+.|++++.|+. |++||+++++.+..+..+
T Consensus 163 i~-iwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~-v~iwd~~~~~~~~~~~~~ 222 (420)
T 3vl1_A 163 LK-IWSVKDGS-----NPRTLIGHRATVTDIAIIDRGRNVLSASLDGT-IRLWECGTGTTIHTFNRK 222 (420)
T ss_dssp EE-EEETTTCC-----CCEEEECCSSCEEEEEEETTTTEEEEEETTSC-EEEEETTTTEEEEEECBT
T ss_pred EE-EEeCCCCc-----CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCc-EEEeECCCCceeEEeecC
Confidence 56 89998775 88899999999999999999999999999999 999999999999888753
No 57
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.26 E-value=3.8e-11 Score=74.69 Aligned_cols=69 Identities=10% Similarity=0.210 Sum_probs=55.9
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC--cEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK--VQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~--~~~~~~~~~~~~~~ 75 (78)
+. +||+.+.. ...++..++.+|...|.+++|+|++++|++++.|++ |++||..++ .++..+.+|..++.
T Consensus 131 v~-iwd~~~~~-~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-i~iW~~~~~~~~~~~~~~~h~~~v~ 201 (330)
T 2hes_X 131 VW-IWETDESG-EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDT-VRIWKDYDDDWECVAVLNGHEGTVW 201 (330)
T ss_dssp EE-EEECCTTC-CCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSC-EEEEEEETTEEEEEEEECCCSSCEE
T ss_pred EE-EEeccCCC-CCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCe-EEEEECCCCCeeEEEEccCCCCcEE
Confidence 45 89985432 112356788999999999999999999999999999 999998776 67788888877664
No 58
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.26 E-value=6.1e-11 Score=75.14 Aligned_cols=69 Identities=17% Similarity=0.394 Sum_probs=58.7
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW 78 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w 78 (78)
+. +||++... .....+.+|.++|.+++|+|+|++|++++.|+. |++||++++..+..+..|..++. +.|
T Consensus 198 i~-i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~-v~iwd~~~~~~~~~~~~~~~~v~~~~~ 267 (401)
T 4aez_A 198 IH-HHDVRIAN----HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNV-VQIWDARSSIPKFTKTNHNAAVKAVAW 267 (401)
T ss_dssp EE-EEETTSSS----CEEEEEECCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTCSSEEEEECCCSSCCCEEEE
T ss_pred EE-EEecccCc----ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCe-EEEccCCCCCccEEecCCcceEEEEEE
Confidence 45 89987543 478888999999999999999999999999999 99999999999998887766654 443
No 59
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.26 E-value=2.4e-11 Score=76.23 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=58.3
Q ss_pred eeeeEEEcccCCcCCCCCcEEec-CCccCEEEEEECC-CCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 3 YLQCSQDLSSTELSSSSSPVTIN-AHQSELACLALNQ-TGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 3 ~~~~i~d~~~~~~~~~~~~~~~~-~h~~~i~~v~fs~-dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
.+. +||+++.. .....+. +|..+|.+++|+| ++++|++++.|+. |++||+++++.+..+..|..++.
T Consensus 241 ~i~-~~d~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~-v~~wd~~~~~~~~~~~~~~~~v~ 309 (416)
T 2pm9_A 241 SIL-IWDLRNAN----TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT-VLLWNPESAEQLSQFPARGNWCF 309 (416)
T ss_dssp CCC-EEETTSTT----SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE-EEEECSSSCCEEEEEECSSSCCC
T ss_pred eEE-EEeCCCCC----CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC-EEEeeCCCCccceeecCCCCceE
Confidence 456 89998753 3677788 8999999999999 9999999999999 99999999999999998876654
No 60
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.25 E-value=5.2e-11 Score=83.74 Aligned_cols=65 Identities=25% Similarity=0.424 Sum_probs=59.6
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
+. +||+.+.. ...++.+|.++|.+++|+|+|++|++++.|+. |++||+.+++.+..+.+|..++.
T Consensus 639 i~-vw~~~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~-v~vwd~~~~~~~~~~~~~~~~v~ 703 (1249)
T 3sfz_A 639 LQ-VFKAETGE-----KLLDIKAHEDEVLCCAFSSDDSYIATCSADKK-VKIWDSATGKLVHTYDEHSEQVN 703 (1249)
T ss_dssp EE-EEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEECCSSCEE
T ss_pred EE-EEECCCCC-----EEEEeccCCCCEEEEEEecCCCEEEEEeCCCe-EEEEECCCCceEEEEcCCCCcEE
Confidence 55 89998776 88899999999999999999999999999999 99999999999999998887765
No 61
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.25 E-value=3.3e-11 Score=73.96 Aligned_cols=56 Identities=25% Similarity=0.357 Sum_probs=48.5
Q ss_pred EEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCC--CcEEEEeeCCCCCeE-EeC
Q psy1940 22 VTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLK--KVQLVELRRGSDPAT-LYW 78 (78)
Q Consensus 22 ~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~--~~~~~~~~~~~~~~~-~~w 78 (78)
..+.+|.++|++++|+|+|++|++++.|+. |++||+.+ ++.+..+.+|..++. +.|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~-v~iw~~~~~~~~~~~~l~gH~~~V~~v~~ 61 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKT-IKIFEVEGETHKLIDTLTGHEGPVWRVDW 61 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSC-EEEEEBCSSCBCCCEEECCCSSCEEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCE-EEEEecCCCCcEEEEEEccccCCeEEEEe
Confidence 457899999999999999999999999999 99999874 467788999988875 543
No 62
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.25 E-value=3.8e-11 Score=74.74 Aligned_cols=65 Identities=12% Similarity=0.127 Sum_probs=54.0
Q ss_pred eeeEEEcccCCcCCCCCcEEec-CCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEE-EEeeC-CCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTIN-AHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQL-VELRR-GSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~-~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~-~~~~~-~~~~~~ 75 (78)
+. +||+.+.. ....+. .|..+|.+++|+|+|.+|++|+.|+. |++||+++++.+ ..++. |..+++
T Consensus 151 i~-~wd~~~~~-----~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~-i~iwd~~~~~~~~~~~~~~h~~~v~ 218 (343)
T 3lrv_A 151 IG-FQSYEDDS-----QYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGI-LDVYNLSSPDQASSRFPVDEEAKIK 218 (343)
T ss_dssp EE-EEESSSSC-----EEEEECCCSSCCCCEEEECTTSCEEEEECTTSC-EEEEESSCTTSCCEECCCCTTSCEE
T ss_pred EE-EEECCCCc-----EEEEEecCCCCceEEEEECCCCCEEEEEcCCCE-EEEEECCCCCCCccEEeccCCCCEE
Confidence 45 89998765 555554 45668999999999999999999999 999999999887 78887 777765
No 63
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.23 E-value=6e-11 Score=75.01 Aligned_cols=62 Identities=18% Similarity=0.311 Sum_probs=54.9
Q ss_pred eeeEEEcccCCcCCCCCcEEe--cCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEe-eCCCC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTI--NAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVEL-RRGSD 72 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~--~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~-~~~~~ 72 (78)
+. +||+.+.. ...++ .+|.+.|.+++|+|+|+.|++++.|+. |++||++++..+..+ ..|..
T Consensus 156 i~-iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~ 220 (402)
T 2aq5_A 156 IL-VWDVGTGA-----AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKR-VRVIEPRKGTVVAEKDRPHEG 220 (402)
T ss_dssp EE-EEETTTTE-----EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSE-EEEEETTTTEEEEEEECSSCS
T ss_pred EE-EEECCCCC-----ccEEEecCCCCCceEEEEECCCCCEEEEEecCCc-EEEEeCCCCceeeeeccCCCC
Confidence 45 89998765 78888 789999999999999999999999999 999999999999888 55554
No 64
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.23 E-value=8.9e-11 Score=73.39 Aligned_cols=70 Identities=16% Similarity=0.258 Sum_probs=54.3
Q ss_pred eeeEEEcccCCcCCCCCcEE-ecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC--cEEEEeeCCCCCeE-EeC
Q psy1940 4 LQCSQDLSSTELSSSSSPVT-INAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK--VQLVELRRGSDPAT-LYW 78 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~-~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~--~~~~~~~~~~~~~~-~~w 78 (78)
++ +||+..... .+... ..+|...|.+++|+|+|++|++++.|+. +++||..++ .++..+++|..++. +.|
T Consensus 40 i~-iw~~~~~~~---~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~-v~iw~~~~~~~~~~~~~~~h~~~v~~v~~ 113 (345)
T 3fm0_A 40 IR-IWGTEGDSW---ICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT-TCIWKKNQDDFECVTTLEGHENEVKSVAW 113 (345)
T ss_dssp EE-EEEEETTEE---EEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC-EEEEEECCC-EEEEEEECCCSSCEEEEEE
T ss_pred EE-EEEcCCCcc---eeeeeeccccCCcEEEEEECCCCCEEEEEECCCc-EEEEEccCCCeEEEEEccCCCCCceEEEE
Confidence 56 898875430 01222 3689999999999999999999999999 999998876 46788888887765 544
No 65
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.23 E-value=7.8e-11 Score=72.45 Aligned_cols=61 Identities=18% Similarity=0.306 Sum_probs=53.3
Q ss_pred CCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940 17 SSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW 78 (78)
Q Consensus 17 ~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w 78 (78)
.......+.+|.++|.+++|+|+|++|++++.|+. |++||+.+++.+..+.+|..++. +.|
T Consensus 21 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~h~~~v~~~~~ 82 (369)
T 3zwl_B 21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSS-ASVWYSLNGERLGTLDGHTGTIWSIDV 82 (369)
T ss_dssp CSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSC-EEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred cccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCE-EEEEeCCCchhhhhhhhcCCcEEEEEE
Confidence 33456678899999999999999999999999999 99999999999999998887765 443
No 66
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.23 E-value=1.1e-10 Score=71.69 Aligned_cols=69 Identities=16% Similarity=0.345 Sum_probs=54.4
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW 78 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w 78 (78)
++ +||+.+... .....+.+|.++|.+++|+|++++|++++.|+. |++||++++..+... .|..++. +.|
T Consensus 66 i~-iw~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~-v~iwd~~~~~~~~~~-~~~~~v~~~~~ 135 (368)
T 3mmy_A 66 VR-CWEVQDSGQ---TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT-AKMWDLSSNQAIQIA-QHDAPVKTIHW 135 (368)
T ss_dssp EE-EEEECTTSC---EEEEEEEECSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEE-ECSSCEEEEEE
T ss_pred EE-EEEcCCCCc---eeEEEeccccCCEEEEEECcCCCEEEEEcCCCc-EEEEEcCCCCceeec-cccCceEEEEE
Confidence 56 899986330 233778899999999999999999999999999 999999998877644 4555544 443
No 67
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.22 E-value=4.4e-11 Score=80.74 Aligned_cols=68 Identities=12% Similarity=0.103 Sum_probs=60.5
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW 78 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w 78 (78)
+. +||+.+.. ....+.+|.++|.+++|+|+|++|++++.|+. |++||+.+++.+..+.+|..++. +.|
T Consensus 37 v~-iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~vw~~~~~~~~~~~~~~~~~v~~~~~ 105 (814)
T 3mkq_A 37 VE-IWNYETQV-----EVRSIQVTETPVRAGKFIARKNWIIVGSDDFR-IRVFNYNTGEKVVDFEAHPDYIRSIAV 105 (814)
T ss_dssp EE-EEETTTTE-----EEEEEECCSSCEEEEEEEGGGTEEEEEETTSE-EEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred EE-EEECCCCc-----eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCe-EEEEECCCCcEEEEEecCCCCEEEEEE
Confidence 45 89987765 88889999999999999999999999999999 99999999999999998887766 544
No 68
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.22 E-value=1.1e-10 Score=70.77 Aligned_cols=72 Identities=19% Similarity=0.308 Sum_probs=56.8
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECC--CCCEEEEEcCCCCEEEEeeCCCC---------cEEEEeeCCCC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQ--TGTMIATASSKGTLIRVWDTLKK---------VQLVELRRGSD 72 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~--dg~~l~s~~~d~~~i~i~d~~~~---------~~~~~~~~~~~ 72 (78)
+. +||+.+.. ...+....+.+|..+|.+++|+| |+++|++++.|+. |++||++++ +.+..+..|..
T Consensus 35 i~-iw~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 111 (351)
T 3f3f_A 35 IK-VFKLDKDT-SNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT-VKLWEEDPDQEECSGRRWNKLCTLNDSKG 111 (351)
T ss_dssp EE-EEEECSSS-CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSC-EEEEEECTTSCTTSSCSEEEEEEECCCSS
T ss_pred EE-EEECCCCC-CcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCe-EEEEecCCCcccccccCcceeeeecccCC
Confidence 56 89987653 11125667789999999999999 6999999999999 999999887 56777877777
Q ss_pred CeE-EeC
Q psy1940 73 PAT-LYW 78 (78)
Q Consensus 73 ~~~-~~w 78 (78)
++. +.|
T Consensus 112 ~v~~~~~ 118 (351)
T 3f3f_A 112 SLYSVKF 118 (351)
T ss_dssp CEEEEEE
T ss_pred ceeEEEE
Confidence 665 443
No 69
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.21 E-value=2.6e-11 Score=75.07 Aligned_cols=56 Identities=21% Similarity=0.381 Sum_probs=43.0
Q ss_pred EEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCc--EEEEeeCCCCCeE-EeC
Q psy1940 22 VTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKV--QLVELRRGSDPAT-LYW 78 (78)
Q Consensus 22 ~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~--~~~~~~~~~~~~~-~~w 78 (78)
..+.+|.++|++++|+|+|++|++++.|++ |++||++++. .+..+++|..++. +.|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~-v~lwd~~~~~~~~~~~l~gH~~~V~~v~~ 65 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRS-VKIFDVRNGGQILIADLRGHEGPVWQVAW 65 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTE-EEEEEEETTEEEEEEEEECCSSCEEEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCe-EEEEEecCCCcEEEEEEcCCCccEEEEEe
Confidence 345689999999999999999999999999 9999998774 5678888888776 544
No 70
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.20 E-value=6.3e-11 Score=77.40 Aligned_cols=68 Identities=21% Similarity=0.294 Sum_probs=58.8
Q ss_pred eeeEEEcccCCcCCCCCcEEecC-CccCEEEEEECC----------CCCEEEEEcCCCCEEEEeeCCCC-cEEEEeeCCC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINA-HQSELACLALNQ----------TGTMIATASSKGTLIRVWDTLKK-VQLVELRRGS 71 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~-h~~~i~~v~fs~----------dg~~l~s~~~d~~~i~i~d~~~~-~~~~~~~~~~ 71 (78)
+. +||+.+.. ....+.+ |..+|.+++|+| +|++|++++.|+. |++||+.++ .++..+.+|.
T Consensus 512 i~-iw~~~~~~-----~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~h~ 584 (615)
T 1pgu_A 512 IL-LYDLQSRE-----VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN-IFIYSVKRPMKIIKALNAHK 584 (615)
T ss_dssp EE-EEETTTTE-----EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC-EEEEESSCTTCCEEETTSST
T ss_pred EE-EeeCCCCc-----ceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCc-EEEEECCCCceechhhhcCc
Confidence 56 89998765 7777877 999999999999 9999999999999 999999998 7888888887
Q ss_pred CCeE-EeC
Q psy1940 72 DPAT-LYW 78 (78)
Q Consensus 72 ~~~~-~~w 78 (78)
.++. +.|
T Consensus 585 ~~v~~l~~ 592 (615)
T 1pgu_A 585 DGVNNLLW 592 (615)
T ss_dssp TCEEEEEE
T ss_pred cceEEEEE
Confidence 7765 544
No 71
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.20 E-value=2.4e-11 Score=78.04 Aligned_cols=48 Identities=13% Similarity=0.136 Sum_probs=41.2
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEE-EEEECCCCCEEEEEcCCCCEEEEeeC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELA-CLALNQTGTMIATASSKGTLIRVWDT 58 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~-~v~fs~dg~~l~s~~~d~~~i~i~d~ 58 (78)
++ |||+.++. +.+++.+|.+.+. +++|+|||++|++|+.|++ |++||+
T Consensus 307 Ik-IWDl~tGk-----~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T-IklWd~ 355 (356)
T 2w18_A 307 IA-IWDLLLGQ-----CTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN-IFVYHY 355 (356)
T ss_dssp EE-EEETTTCS-----EEEEECCC--CCCCEEEECSSSSEEEEECTTSC-EEEEEE
T ss_pred EE-EEECCCCc-----EEEEecCCCCCeEEEEEECCCCCEEEEEECCCc-EEEecC
Confidence 56 99998876 9999999987655 6899999999999999999 999995
No 72
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.19 E-value=2.6e-10 Score=72.25 Aligned_cols=65 Identities=9% Similarity=0.196 Sum_probs=56.3
Q ss_pred eeeEEEcccCCcCCCCCcEEecC-CccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINA-HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~-h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
+. +||+.+.. ....+.. |..+|.+++|+|+|++|++++.|+. |++||+.+++.+..+.+|...+.
T Consensus 115 v~-lw~~~~~~-----~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~v~ 180 (401)
T 4aez_A 115 VY-VWNADSGS-----VSALAETDESTYVASVKWSHDGSFLSVGLGNGL-VDIYDVESQTKLRTMAGHQARVG 180 (401)
T ss_dssp EE-EEETTTCC-----EEEEEECCTTCCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCEEEEECCCSSCEE
T ss_pred EE-EeeCCCCc-----EeEeeecCCCCCEEEEEECCCCCEEEEECCCCe-EEEEECcCCeEEEEecCCCCceE
Confidence 45 89987765 5566654 8899999999999999999999999 99999999999999998877765
No 73
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.18 E-value=1.8e-10 Score=71.20 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=52.5
Q ss_pred CCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940 19 SSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW 78 (78)
Q Consensus 19 ~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w 78 (78)
+....+.+|..+|.+++|+|+|++|++++.|+. |++||+++++.+..+..+..++. +.|
T Consensus 193 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~v~~~~~ 252 (372)
T 1k8k_C 193 ELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADKKMAVATLASETLPLLAVTF 252 (372)
T ss_dssp CEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGGTTEEEEEECSSCCEEEEEE
T ss_pred hheEecCCCCCeEEEEEECCCCCEEEEEeCCCE-EEEEECCCCceeEEEccCCCCeEEEEE
Confidence 477888899999999999999999999999999 99999999999999998876654 443
No 74
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.18 E-value=1.3e-10 Score=71.83 Aligned_cols=67 Identities=15% Similarity=0.247 Sum_probs=55.4
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCC--CCEEEEEcCCCCEEEEeeCCCCc--EEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQT--GTMIATASSKGTLIRVWDTLKKV--QLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~d--g~~l~s~~~d~~~i~i~d~~~~~--~~~~~~~~~~~~~ 75 (78)
+. +||+.... .+....+.+|.++|.+++|+|+ +++|++++.|+. |++||++++. .+..+..|..++.
T Consensus 35 i~-iw~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~v~ 105 (379)
T 3jrp_A 35 IK-IFEVEGET---HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK-VLIWKEENGRWSQIAVHAVHSASVN 105 (379)
T ss_dssp EE-EEEEETTE---EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC-EEEEEEETTEEEEEEEECCCSSCEE
T ss_pred EE-EEecCCCc---ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE-EEEEEcCCCceeEeeeecCCCcceE
Confidence 45 89987432 1377788999999999999987 999999999999 9999999986 6777777776665
No 75
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.17 E-value=3.2e-10 Score=69.49 Aligned_cols=70 Identities=14% Similarity=0.259 Sum_probs=56.6
Q ss_pred eeeEEEcccCC-cCCCCCcEEecCCcc---------CEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC-CC
Q psy1940 4 LQCSQDLSSTE-LSSSSSPVTINAHQS---------ELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG-SD 72 (78)
Q Consensus 4 ~~~i~d~~~~~-~~~~~~~~~~~~h~~---------~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~-~~ 72 (78)
+. +||+.... ....+....+..|.. +|.+++|+|+|++|++++.|+. |++||+++++.+..+..| ..
T Consensus 218 i~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~h~~ 295 (342)
T 1yfq_A 218 VA-VEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQTRKKIKNFAKFNED 295 (342)
T ss_dssp EE-EEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETTTTEEEEECCCCSSS
T ss_pred EE-EEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCce-EEEEcCccHhHhhhhhcccCC
Confidence 45 78876651 011247788888865 9999999999999999999999 999999999999999887 66
Q ss_pred CeE
Q psy1940 73 PAT 75 (78)
Q Consensus 73 ~~~ 75 (78)
++.
T Consensus 296 ~v~ 298 (342)
T 1yfq_A 296 SVV 298 (342)
T ss_dssp EEE
T ss_pred Cce
Confidence 654
No 76
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.17 E-value=2.7e-10 Score=69.41 Aligned_cols=67 Identities=22% Similarity=0.303 Sum_probs=56.1
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEEe
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLY 77 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~ 77 (78)
+. +||+.+.. ....+..|..+|.+++|+|+++.|++++.|+. |++||+++++.+..+........+.
T Consensus 165 v~-~~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~v~~~~ 231 (337)
T 1gxr_A 165 IA-VWDLHNQT-----LVRQFQGHTDGASCIDISNDGTKLWTGGLDNT-VRSWDLREGRQLQQHDFTSQIFSLG 231 (337)
T ss_dssp EE-EEETTTTE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECSSCEEEEE
T ss_pred EE-EEeCCCCc-----eeeeeecccCceEEEEECCCCCEEEEEecCCc-EEEEECCCCceEeeecCCCceEEEE
Confidence 45 89988765 78889999999999999999999999999999 9999999998888776544333343
No 77
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.17 E-value=4.9e-11 Score=73.69 Aligned_cols=58 Identities=26% Similarity=0.338 Sum_probs=49.3
Q ss_pred CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCC--CCcEEEEeeCCCCCeE-EeC
Q psy1940 20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTL--KKVQLVELRRGSDPAT-LYW 78 (78)
Q Consensus 20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~--~~~~~~~~~~~~~~~~-~~w 78 (78)
...++.+|.++|.+++|+|+|++|++++.|+. |++||+. ++..+..+.+|..++. +.|
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~h~~~v~~~~~ 63 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKT-IKIFEVEGETHKLIDTLTGHEGPVWRVDW 63 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSC-EEEEEEETTEEEEEEEECCCSSCEEEEEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCc-EEEEecCCCcceeeeEecCCCCcEEEEEe
Confidence 56678899999999999999999999999999 9999998 5677788888888775 544
No 78
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.17 E-value=6.1e-11 Score=73.82 Aligned_cols=56 Identities=16% Similarity=0.280 Sum_probs=47.4
Q ss_pred eeeEEEcccCCcCCCCCc-EEecC-CccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEe
Q psy1940 4 LQCSQDLSSTELSSSSSP-VTINA-HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVEL 67 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~-~~~~~-h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~ 67 (78)
++ +||+++.. .. .++.. |.++|.+++|+|+|.+|++++.+ . |++||++++..+..+
T Consensus 194 i~-iwd~~~~~-----~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-~-v~iwd~~~~~~~~~~ 251 (343)
T 3lrv_A 194 LD-VYNLSSPD-----QASSRFPVDEEAKIKEVKFADNGYWMVVECDQ-T-VVCFDLRKDVGTLAY 251 (343)
T ss_dssp EE-EEESSCTT-----SCCEECCCCTTSCEEEEEECTTSSEEEEEESS-B-EEEEETTSSTTCBSS
T ss_pred EE-EEECCCCC-----CCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-e-EEEEEcCCCCcceee
Confidence 56 89998876 55 78887 99999999999999999999944 8 999999988765443
No 79
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.17 E-value=9.3e-11 Score=73.05 Aligned_cols=58 Identities=12% Similarity=0.143 Sum_probs=46.5
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~ 68 (78)
+. +||+.+.. ....+.+|.++|.+++|+|+|++|++++.|+. |++||+++++.+....
T Consensus 316 i~-v~d~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~-i~iw~~~~~~~~~~~~ 373 (408)
T 4a11_B 316 IA-VYTVYSGE-----QITMLKGHYKTVDCCVFQSNFQELYSGSRDCN-ILAWVPSLYEPVPDDD 373 (408)
T ss_dssp EE-EEETTTCC-----EEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEEECC--------
T ss_pred EE-EEECcCCc-----ceeeeccCCCeEEEEEEcCCCCEEEEECCCCe-EEEEeCCCCCccCCCC
Confidence 55 89988765 88999999999999999999999999999999 9999999988765544
No 80
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.15 E-value=1.7e-10 Score=72.54 Aligned_cols=51 Identities=12% Similarity=0.215 Sum_probs=46.4
Q ss_pred eeeEEEcccCCcCCCCCcEEec-C-CccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTIN-A-HQSELACLALNQTGTMIATASSKGTLIRVWDTLKK 61 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~-~-h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~ 61 (78)
++ +||+++.. +..++. + |.++|++++|+|||++|++++.|++ |++||++.+
T Consensus 220 v~-iwd~~~~~-----~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~-v~iw~~~~~ 272 (355)
T 3vu4_A 220 IR-VFKTEDGV-----LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT-LHVFEIFND 272 (355)
T ss_dssp EE-EEETTTCC-----EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE-EEEEESSCC
T ss_pred EE-EEECCCCc-----EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE-EEEEEccCC
Confidence 67 99998776 888898 5 9999999999999999999999999 999999765
No 81
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.14 E-value=2.7e-10 Score=69.12 Aligned_cols=57 Identities=19% Similarity=0.199 Sum_probs=48.2
Q ss_pred cEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC----cEEEEeeCCCCCeE-EeC
Q psy1940 21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK----VQLVELRRGSDPAT-LYW 78 (78)
Q Consensus 21 ~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~----~~~~~~~~~~~~~~-~~w 78 (78)
...+.+|.++|.+++|+|+|++|++++.|+. |++||+.++ ..+..+.+|..++. +.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~ 65 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQH-IKVFKLDKDTSNWELSDSWRAHDSSIVAIDW 65 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSE-EEEEEECSSSCCEEEEEEEECCSSCEEEEEE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCe-EEEEECCCCCCcceecceeccCCCcEEEEEE
Confidence 3456799999999999999999999999999 999999876 46677788877766 443
No 82
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.14 E-value=3.6e-10 Score=70.61 Aligned_cols=65 Identities=17% Similarity=0.294 Sum_probs=57.5
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
+. +||+.... ....+..|..+|.+++|+|++++|++++.|+. |++||++++..+..+..|..++.
T Consensus 229 i~-~~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~i~ 293 (425)
T 1r5m_A 229 IF-VYQITEKT-----PTGKLIGHHGPISVLEFNDTNKLLLSASDDGT-LRIWHGGNGNSQNCFYGHSQSIV 293 (425)
T ss_dssp EE-EEETTCSS-----CSEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEECSSSBSCSEEECCCSSCEE
T ss_pred EE-EEEcCCCc-----eeeeeccCCCceEEEEECCCCCEEEEEcCCCE-EEEEECCCCccceEecCCCccEE
Confidence 45 88988765 78889999999999999999999999999999 99999999998888887766654
No 83
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.14 E-value=1.9e-10 Score=71.84 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=53.3
Q ss_pred eeeeEEEcccCCcCCCCCcEEecC---C---ccCEEEEEECCCCCEEEEEcCC---CCEEEEeeCCCCcEEEEeeC
Q psy1940 3 YLQCSQDLSSTELSSSSSPVTINA---H---QSELACLALNQTGTMIATASSK---GTLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 3 ~~~~i~d~~~~~~~~~~~~~~~~~---h---~~~i~~v~fs~dg~~l~s~~~d---~~~i~i~d~~~~~~~~~~~~ 69 (78)
.+. +||+++.. ....+.. | ..+|.+++|+|++++|++++.| +. |++||+++++.+..+..
T Consensus 208 ~i~-i~d~~~~~-----~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~-i~i~d~~~~~~~~~~~~ 276 (397)
T 1sq9_A 208 TVQ-ISELSTLR-----PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC-ITLYETEFGERIGSLSV 276 (397)
T ss_dssp EEE-EEETTTTE-----EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEE-EEEEETTTCCEEEEECB
T ss_pred cEE-EEECCCCc-----eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCce-EEEEECCCCcccceecc
Confidence 356 89998765 7888888 9 9999999999999999999999 99 99999999999999987
No 84
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.14 E-value=5.9e-10 Score=71.25 Aligned_cols=63 Identities=25% Similarity=0.385 Sum_probs=56.4
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
+. +||+.+.. ....+.+|.++|.+++| +++.|++++.|+. |++||+.+++.+..+.+|..++.
T Consensus 155 i~-iwd~~~~~-----~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~-i~vwd~~~~~~~~~~~~h~~~v~ 217 (435)
T 1p22_A 155 IK-IWDKNTLE-----CKRILTGHTGSVLCLQY--DERVIITGSSDST-VRVWDVNTGEMLNTLIHHCEAVL 217 (435)
T ss_dssp EE-EEESSSCC-----EEEEECCCSSCEEEEEC--CSSEEEEEETTSC-EEEEESSSCCEEEEECCCCSCEE
T ss_pred EE-EEeCCCCe-----EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCe-EEEEECCCCcEEEEEcCCCCcEE
Confidence 56 89987765 88899999999999999 7889999999999 99999999999999998877765
No 85
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.13 E-value=2.5e-10 Score=71.35 Aligned_cols=68 Identities=18% Similarity=0.162 Sum_probs=58.2
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCc--------------------E
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKV--------------------Q 63 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~--------------------~ 63 (78)
+. +||+.+.. ....+..|..+|.+++|+|+|++|++++.|+. |++||++++. .
T Consensus 312 i~-i~d~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (425)
T 1r5m_A 312 VR-LWSLKQNT-----LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ-VNVYDLKKLNSKSRSLYGNRDGILNPLPIPL 384 (425)
T ss_dssp EE-EEETTTTE-----EEEEEECTTCCEEEEEECTTSSEEEEEETTSC-EEEEECHHHHC--------------CEECCE
T ss_pred EE-EEECCCCc-----EeEecccCCccEEEEEEcCCCCEEEEEECCCe-EEEEECCCCccceeeeecccccccCcccchh
Confidence 55 89988765 88888999999999999999999999999999 9999999888 8
Q ss_pred EEEeeCCCC--CeE-EeC
Q psy1940 64 LVELRRGSD--PAT-LYW 78 (78)
Q Consensus 64 ~~~~~~~~~--~~~-~~w 78 (78)
+..+..|.. ++. +.|
T Consensus 385 ~~~~~~~~~~~~v~~~~~ 402 (425)
T 1r5m_A 385 YASYQSSQDNDYIFDLSW 402 (425)
T ss_dssp EEEECCTTCCCCEEEEEE
T ss_pred hhhhcCcccCCceEEEEc
Confidence 888888754 544 443
No 86
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.13 E-value=7.5e-10 Score=67.39 Aligned_cols=67 Identities=19% Similarity=0.322 Sum_probs=56.2
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
+. +||+.+.. ......+..|...|.+++|+|++++|++++.|+. |++||+++++.+..+..|..++.
T Consensus 121 i~-~~d~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-v~~~d~~~~~~~~~~~~~~~~i~ 187 (337)
T 1gxr_A 121 LS-IWDLAAPT---PRIKAELTSSAPACYALAISPDSKVCFSCCSDGN-IAVWDLHNQTLVRQFQGHTDGAS 187 (337)
T ss_dssp EE-EEECCCC-----EEEEEEECSSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCCSSCEE
T ss_pred EE-EEECCCCC---cceeeecccCCCceEEEEECCCCCEEEEEeCCCc-EEEEeCCCCceeeeeecccCceE
Confidence 45 88887654 1256677889999999999999999999999999 99999999999999988777665
No 87
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.13 E-value=6e-10 Score=71.41 Aligned_cols=71 Identities=28% Similarity=0.522 Sum_probs=57.7
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCC-EEEEEcCCCCEEEEeeCCC-CcEEEEeeCCCCCeE-EeC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGT-MIATASSKGTLIRVWDTLK-KVQLVELRRGSDPAT-LYW 78 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~-~l~s~~~d~~~i~i~d~~~-~~~~~~~~~~~~~~~-~~w 78 (78)
+. +||++... ..+....+..|...|++++|+|++. .|++++.|+. |++||+++ +..+..+..|..++. +.|
T Consensus 256 i~-i~d~~~~~--~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~-v~vwd~~~~~~~~~~~~~h~~~v~~i~~ 329 (430)
T 2xyi_A 256 LM-IWDTRNNN--TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT-VALWDLRNLKLKLHSFESHKDEIFQVQW 329 (430)
T ss_dssp EE-EEETTCSC--SSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSE-EEEEETTCTTSCSEEEECCSSCEEEEEE
T ss_pred EE-EEECCCCC--CCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCe-EEEEeCCCCCCCeEEeecCCCCEEEEEE
Confidence 56 89998763 1247778889999999999999987 6889999999 99999998 567788887776665 544
No 88
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.11 E-value=5e-11 Score=74.32 Aligned_cols=54 Identities=11% Similarity=0.142 Sum_probs=46.1
Q ss_pred CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcE----EEEeeCCCCCeE
Q psy1940 20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQ----LVELRRGSDPAT 75 (78)
Q Consensus 20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~----~~~~~~~~~~~~ 75 (78)
....+ +|.++|.+++|+|+|++|++++.|+. |++||++++.. +..+..|..++.
T Consensus 198 ~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~v~ 255 (377)
T 3dwl_C 198 VCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS-VTIAYPSAPEQPPRALITVKLSQLPLR 255 (377)
T ss_dssp EEECC-CCSSSEEEEEECTTSSCEEEEETTTE-EC-CEECSTTSCEEECCCEECSSSCEE
T ss_pred hhhcc-cCCceEEEEEECCCCCEEEEEeCCCc-EEEEECCCCCCcceeeEeecCCCCceE
Confidence 45555 89999999999999999999999999 99999999877 777788777654
No 89
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.11 E-value=7.7e-10 Score=72.27 Aligned_cols=65 Identities=11% Similarity=0.036 Sum_probs=56.9
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCcc---CEEEEEECCC-CCEEEEEcCCCCEEEEeeCCCCcEEEEe-e---CCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQS---ELACLALNQT-GTMIATASSKGTLIRVWDTLKKVQLVEL-R---RGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~---~i~~v~fs~d-g~~l~s~~~d~~~i~i~d~~~~~~~~~~-~---~~~~~~~ 75 (78)
+. +||+.+.. ....+.+|.. +|.+++|+|+ |++|++++.|+. |++||+++++.+..+ . .|..++.
T Consensus 185 v~-vwd~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~v~ 257 (615)
T 1pgu_A 185 VV-FYQGPPFK-----FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKSGEFLKYIEDDQEPVQGGIF 257 (615)
T ss_dssp EE-EEETTTBE-----EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTTCCEEEECCBTTBCCCSCEE
T ss_pred EE-EEeCCCcc-----eeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe-EEEEECCCCCEeEEecccccccCCceE
Confidence 45 89987665 7888999999 9999999999 999999999999 999999999999998 5 6666654
No 90
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.10 E-value=2.8e-10 Score=72.97 Aligned_cols=56 Identities=13% Similarity=0.119 Sum_probs=44.8
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECC-CCCEEEEEcCCCCEEEEeeCCCCcEE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQ-TGTMIATASSKGTLIRVWDTLKKVQL 64 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~-dg~~l~s~~~d~~~i~i~d~~~~~~~ 64 (78)
+. |||+.... ......+.+|.++|++++|+| ++++|++++.|++ |++||++++...
T Consensus 144 i~-lWd~~~~~---~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~-v~iwd~~~~~~~ 200 (435)
T 4e54_B 144 IM-LWNFGIKD---KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT-TRLQDFKGNILR 200 (435)
T ss_dssp EE-EECSSCCS---CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC-EEEEETTSCEEE
T ss_pred EE-EEECCCCC---ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE-EEEeeccCCcee
Confidence 45 89887654 124445668999999999998 7899999999999 999999866543
No 91
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.10 E-value=2.1e-10 Score=73.56 Aligned_cols=63 Identities=17% Similarity=0.159 Sum_probs=50.5
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG 70 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~ 70 (78)
+. +||+++.... .......+|..+|++++|+|+|++|++++.|+. |++||++++.+...+..|
T Consensus 275 v~-iwd~~~~~~~--~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~-i~iwd~~~~~~~~~~~~~ 337 (435)
T 4e54_B 275 VK-IWDLRQVRGK--ASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE-IRVYSASQWDCPLGLIPH 337 (435)
T ss_dssp CC-EEETTTCCSS--SCCSBCCBCSSCEEECCBCTTSSEEEEEESSSC-EEEEESSSSSSEEEECCC
T ss_pred ee-EEeccccccc--ceEEEeeeccccccceeECCCCCeeEEEcCCCE-EEEEECCCCccceEEecc
Confidence 45 8999876521 233334689999999999999999999999999 999999998877766544
No 92
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.08 E-value=1e-10 Score=77.78 Aligned_cols=68 Identities=7% Similarity=-0.049 Sum_probs=56.9
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCcc--CEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQS--ELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW 78 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~--~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w 78 (78)
++ |||+++.. +..++.+|.. .|.+++|+|+++.+++++.|++ |++||++++.++..+.+|..++. +.|
T Consensus 335 vk-lWD~~~~~-----~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~t-v~lwd~~~~~~~~~l~gH~~~V~sva~ 405 (524)
T 2j04_B 335 FY-IFNPKDIA-----TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASS-LRAVPSRAAFAVHPLVSRETTITAIGV 405 (524)
T ss_dssp EE-EECGGGHH-----HHCEEEEECSCCSCCCEEEETTTTEEEEECSSSE-EEEEETTCTTCCEEEEECSSCEEEEEC
T ss_pred EE-EEECCCCC-----cccccccccccCcccceEeCCCcCeEEEeCCCCc-EEEEECcccccceeeecCCCceEEEEe
Confidence 56 99998765 6667777753 5889999999999999999999 99999999998888888887765 544
No 93
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.08 E-value=1.1e-09 Score=70.20 Aligned_cols=69 Identities=16% Similarity=0.292 Sum_probs=56.4
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCC-EEEEEcCCCCEEEEeeCCC--------------CcEEEEee
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGT-MIATASSKGTLIRVWDTLK--------------KVQLVELR 68 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~-~l~s~~~d~~~i~i~d~~~--------------~~~~~~~~ 68 (78)
+. +||+++.. ..+.++..|.++|.+++|+|+++ .|++++.|+. |++||++. ...+..+.
T Consensus 302 v~-vwd~~~~~----~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (430)
T 2xyi_A 302 VA-LWDLRNLK----LKLHSFESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLSKIGEEQSTEDAEDGPPELLFIHG 375 (430)
T ss_dssp EE-EEETTCTT----SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC-CEEEEGGGTTCCCCHHHHHHCCTTEEEECC
T ss_pred EE-EEeCCCCC----CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCCCCccccCccccccCCcceEEEcC
Confidence 56 89998754 47889999999999999999995 6999999999 99999986 35667777
Q ss_pred CCCCCeE-EeC
Q psy1940 69 RGSDPAT-LYW 78 (78)
Q Consensus 69 ~~~~~~~-~~w 78 (78)
+|..+++ +.|
T Consensus 376 ~h~~~v~~~~~ 386 (430)
T 2xyi_A 376 GHTAKISDFSW 386 (430)
T ss_dssp CCSSCEEEEEE
T ss_pred CCCCCceEEEE
Confidence 7776554 554
No 94
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.08 E-value=3.5e-10 Score=73.35 Aligned_cols=73 Identities=15% Similarity=0.219 Sum_probs=53.8
Q ss_pred eeeEEEcccCCcCC---CCC---cEEecCCccCEEEEEECCC-CCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-
Q psy1940 4 LQCSQDLSSTELSS---SSS---PVTINAHQSELACLALNQT-GTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT- 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~---~~~---~~~~~~h~~~i~~v~fs~d-g~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~- 75 (78)
++ +||+.+..... .+. ...+.+|...|.+++|+|+ ++.|++++.|+. |++||++++..+....+|...+.
T Consensus 120 v~-iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~-v~iwD~~~~~~~~~~~~~~~~v~~ 197 (434)
T 2oit_A 120 IA-FFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS-IAVLQVTETVKVCATLPSTVAVTS 197 (434)
T ss_dssp EE-EEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC-EEEEEESSSEEEEEEECGGGCEEE
T ss_pred EE-EEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe-EEEEEcCCCcceeeccCCCCceeE
Confidence 46 89987651110 011 3556679999999999998 899999999999 99999999877666665555544
Q ss_pred EeC
Q psy1940 76 LYW 78 (78)
Q Consensus 76 ~~w 78 (78)
++|
T Consensus 198 v~w 200 (434)
T 2oit_A 198 VCW 200 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
No 95
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.07 E-value=4.6e-10 Score=72.13 Aligned_cols=62 Identities=8% Similarity=0.114 Sum_probs=50.5
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECC---CCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQ---TGTMIATASSKGTLIRVWDTLKKVQLVELRRGS 71 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~---dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~ 71 (78)
++ +|++.... +....+.+|...++.++|+| +++.|++++.|++ |+|||+++|++++++.+|+
T Consensus 159 V~-~~~~s~dG----~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~T-IkIWDl~TGk~l~tL~g~~ 223 (356)
T 2w18_A 159 VE-VMTFAEDG----GGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNN-IVIWNLKTGQLLKKMHIDD 223 (356)
T ss_dssp EE-EEEECTTS----CEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSE-EEEEETTTCCEEEEEECCC
T ss_pred EE-EEEECCCC----ceeeeeccCCCceeeEEeeccCCCCceEEEecCCCc-EEEEECCCCcEEEEEcCCC
Confidence 45 67774432 36667778888888888888 7799999999999 9999999999999998654
No 96
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.07 E-value=1.6e-10 Score=76.82 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=50.3
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEE--EECCCC-CEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACL--ALNQTG-TMIATASSKGTLIRVWDTLKKVQLVELRRG 70 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v--~fs~dg-~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~ 70 (78)
+. +||+.+.. ....++.+|.++|.+| +|+|+| +.|+|++.|++ |++||+++++++..+.+|
T Consensus 289 V~-lWD~~~~~----~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~t-vklWD~~~~~~~~~~~~~ 352 (524)
T 2j04_B 289 VA-EFDLTDPE----VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGY-FYIFNPKDIATTKTTVSR 352 (524)
T ss_dssp EE-EEETTBCS----SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSE-EEEECGGGHHHHCEEEEE
T ss_pred EE-EEECCCCC----CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCe-EEEEECCCCCcccccccc
Confidence 56 99998653 3567789999999999 679998 89999999999 999999988766555544
No 97
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.07 E-value=1.4e-09 Score=73.48 Aligned_cols=65 Identities=18% Similarity=0.322 Sum_probs=57.4
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
+. +||+.+.. ...++.+|.++|.+++|+|+|+.|++++.|+. |++||+.++..+..+..+..++.
T Consensus 210 i~-~~d~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-v~vwd~~~~~~~~~~~~~~~~v~ 274 (814)
T 3mkq_A 210 IK-IWDYQTKS-----CVATLEGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNSSTYKVEKTLNVGLERSW 274 (814)
T ss_dssp EE-EEETTTTE-----EEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTTCSEEEEECCSSSSEE
T ss_pred EE-EEECCCCc-----EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEeecCCCcEE
Confidence 56 89987765 78889999999999999999999999999999 99999999999988887765544
No 98
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.07 E-value=3.9e-10 Score=69.26 Aligned_cols=68 Identities=18% Similarity=0.320 Sum_probs=53.8
Q ss_pred eeeEEEcccCCcCCCCCcEEe-----cCCccCEEEEEECCCCC-EEEEEcCCCCEEEEeeCCCC----------------
Q psy1940 4 LQCSQDLSSTELSSSSSPVTI-----NAHQSELACLALNQTGT-MIATASSKGTLIRVWDTLKK---------------- 61 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~-----~~h~~~i~~v~fs~dg~-~l~s~~~d~~~i~i~d~~~~---------------- 61 (78)
+. +||+++.. ....+ .+|...|.+++|+|+|+ +|++++.|+. |++||++++
T Consensus 236 i~-i~d~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~g~~~~~~ 308 (357)
T 3i2n_A 236 FH-VFDMRTQH-----PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG-LHLWKYEYPIQRSKKDSEGIEMGVA 308 (357)
T ss_dssp EE-EEEEEEEE-----TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE-EEEEEEECCSCC--CCTTSCCCCCC
T ss_pred EE-EEeCcCCC-----cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc-EEEeecCCCcccccccCCCCccccc
Confidence 56 89988765 43334 48999999999999998 8999999999 999998754
Q ss_pred ---cEEEEeeCCCCCeE-EeC
Q psy1940 62 ---VQLVELRRGSDPAT-LYW 78 (78)
Q Consensus 62 ---~~~~~~~~~~~~~~-~~w 78 (78)
..+..+.+|..++. +.|
T Consensus 309 ~~~~~~~~~~~~~~~v~~~~~ 329 (357)
T 3i2n_A 309 GSVSLLQNVTLSTQPISSLDW 329 (357)
T ss_dssp CEEEEEEEEECCSSCEEEEEE
T ss_pred cccceeeccccCCCCeeEEEE
Confidence 35677777777765 544
No 99
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.06 E-value=3.9e-10 Score=71.39 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=50.2
Q ss_pred eeeEEEcccCCcCCCCCcE-------EecCCccCEEEEEECCCC-CEEEEEcCCCCEEEEeeCCCCcE----EEEeeCCC
Q psy1940 4 LQCSQDLSSTELSSSSSPV-------TINAHQSELACLALNQTG-TMIATASSKGTLIRVWDTLKKVQ----LVELRRGS 71 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~-------~~~~h~~~i~~v~fs~dg-~~l~s~~~d~~~i~i~d~~~~~~----~~~~~~~~ 71 (78)
+. +||+.... +... .+.+|...|.+++|+|+| +.|++++.|+. |++||++++.. +..+..+.
T Consensus 200 i~-iwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~ 273 (447)
T 3dw8_B 200 IN-LWHLEITD----RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT-IRLCDMRASALCDRHSKLFEEPE 273 (447)
T ss_dssp EE-EEETTEEE----EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC-EEEEETTTCSSSCTTCEEECCC-
T ss_pred EE-EEECCCCC----ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe-EEEEECcCCccccceeeEeccCC
Confidence 56 89987433 1333 366899999999999999 99999999999 99999999886 67787776
Q ss_pred C
Q psy1940 72 D 72 (78)
Q Consensus 72 ~ 72 (78)
.
T Consensus 274 ~ 274 (447)
T 3dw8_B 274 D 274 (447)
T ss_dssp -
T ss_pred C
Confidence 4
No 100
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.06 E-value=1.2e-09 Score=68.31 Aligned_cols=65 Identities=20% Similarity=0.361 Sum_probs=52.6
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCC-EEEEEcCCCCEEEEeeCCC----CcEEEEeeCCCCCeE-Ee
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGT-MIATASSKGTLIRVWDTLK----KVQLVELRRGSDPAT-LY 77 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~-~l~s~~~d~~~i~i~d~~~----~~~~~~~~~~~~~~~-~~ 77 (78)
+. +||+. . +....+.+|.+.|.+++|+|+++ .|++++.|+. |++||+++ +..+..+. |..++. +.
T Consensus 187 i~-i~d~~-~-----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~ 257 (383)
T 3ei3_B 187 LL-LLGLD-G-----HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDAT-VKLWDLRNIKDKNSYIAEMP-HEKPVNAAY 257 (383)
T ss_dssp EE-EEETT-S-----CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSE-EEEEEGGGCCSTTCEEEEEE-CSSCEEEEE
T ss_pred EE-EEECC-C-----CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCE-EEEEeCCCCCcccceEEEec-CCCceEEEE
Confidence 45 88983 3 37888999999999999999999 9999999999 99999997 66777664 444443 44
No 101
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.06 E-value=6.8e-10 Score=68.27 Aligned_cols=68 Identities=13% Similarity=0.170 Sum_probs=55.5
Q ss_pred eeeEEEcccCCcCCCCCcEEecC-----CccCEEEEEECCC----CCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCe
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINA-----HQSELACLALNQT----GTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPA 74 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~-----h~~~i~~v~fs~d----g~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~ 74 (78)
+. +||+.+.. ....+.. |...|.+++|+|+ |++|++++.|+. |++||+.+++.+..+.+|..++
T Consensus 46 v~-vw~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~-i~v~d~~~~~~~~~~~~~~~~i 118 (366)
T 3k26_A 46 VT-LYECHSQG-----EIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGI-IRIINPITMQCIKHYVGHGNAI 118 (366)
T ss_dssp EE-EEEECGGG-----CEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCE-EEEECTTTCCEEEEEESCCSCE
T ss_pred EE-EEEcCCCc-----EEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCE-EEEEEchhceEeeeecCCCCcE
Confidence 45 89988665 4455543 5678999999999 679999999999 9999999999999999888777
Q ss_pred E-EeC
Q psy1940 75 T-LYW 78 (78)
Q Consensus 75 ~-~~w 78 (78)
. +.|
T Consensus 119 ~~~~~ 123 (366)
T 3k26_A 119 NELKF 123 (366)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 6 443
No 102
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.06 E-value=8.3e-10 Score=71.61 Aligned_cols=58 Identities=9% Similarity=0.097 Sum_probs=48.0
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~ 69 (78)
+. +||+++.. ......+|...|.+++|+|+|++|++++.|+. |++||++ +.....+..
T Consensus 174 v~-iwD~~~~~-----~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~-v~iwd~~-~~~~~~~~~ 231 (434)
T 2oit_A 174 IA-VLQVTETV-----KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGT-VVQYLPT-LQEKKVIPC 231 (434)
T ss_dssp EE-EEEESSSE-----EEEEEECGGGCEEEEEECTTSSCEEEEETTSC-EEEECTT-CCEEEEECC
T ss_pred EE-EEEcCCCc-----ceeeccCCCCceeEEEEcCCCCEEEEEcCCCc-EEEEccC-CcccccccC
Confidence 56 89998764 55556678999999999999999999999999 9999998 655555543
No 103
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.06 E-value=1e-09 Score=76.63 Aligned_cols=44 Identities=11% Similarity=0.269 Sum_probs=39.8
Q ss_pred CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEE
Q psy1940 20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLV 65 (78)
Q Consensus 20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~ 65 (78)
+..++.+|.++|++++||||| +||+|+.|++ |++||++++..+.
T Consensus 567 ~~~~l~~h~~~V~svafSpdG-~lAsgs~D~t-v~lwd~~~~~~~~ 610 (902)
T 2oaj_A 567 PSTAVHANKGKTSAINNSNIG-FVGIAYAAGS-LMLIDRRGPAIIY 610 (902)
T ss_dssp EEEEECCCSCSEEEEEECBTS-EEEEEETTSE-EEEEETTTTEEEE
T ss_pred eeEEEEcCCCcEEEEEecCCc-EEEEEeCCCc-EEEEECCCCeEEE
Confidence 367888999999999999999 9999999999 9999998877664
No 104
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.05 E-value=5.9e-10 Score=67.37 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=49.7
Q ss_pred CCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 19 SSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 19 ~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
+..+++.+|.++|.+++| |++++|++++.|+. |++||+.++.....+..|..++.
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~-v~vw~~~~~~~~~~~~~~~~~v~ 63 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGT-VRLWSKDDQWLGTVVYTGQGFLN 63 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSE-EEEEEESSSEEEEEEEECSSCEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCc-EEEEECCCCEEEEEeecCCccEE
Confidence 477889999999999999 99999999999999 99999999988888888777665
No 105
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.04 E-value=2.9e-09 Score=68.06 Aligned_cols=63 Identities=27% Similarity=0.404 Sum_probs=56.5
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
+. +||+.+.. ...++.+|...|.+++| +++.+++++.|+. |++||++++.++..+.+|..++.
T Consensus 278 i~-vwd~~~~~-----~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~h~~~v~ 340 (435)
T 1p22_A 278 IK-VWNTSTCE-----FVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVLEGHEELVR 340 (435)
T ss_dssp EE-EEETTTCC-----EEEEEECCSSCEEEEEE--ETTEEEEEETTSC-EEEEETTTCCEEEEECCCSSCEE
T ss_pred EE-EEECCcCc-----EEEEEcCCCCcEEEEEe--CCCEEEEEeCCCe-EEEEECCCCCEEEEEeCCcCcEE
Confidence 56 89998775 88899999999999999 4789999999999 99999999999999998887765
No 106
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.02 E-value=2e-09 Score=66.48 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=52.5
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEe--eCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVEL--RRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~--~~~~~~~~ 75 (78)
++ +||+.+.. .+....+.+|..+|.+++|+|+|++|++++.|+. |++||+.+++....+ ..+..++.
T Consensus 32 v~-i~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~v~ 100 (372)
T 1k8k_C 32 VH-IYEKSGNK---WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN-AYVWTLKGRTWKPTLVILRINRAAR 100 (372)
T ss_dssp EE-EEEEETTE---EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSC-EEEEEEETTEEEEEEECCCCSSCEE
T ss_pred EE-EEeCCCCc---EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCe-EEEEECCCCeeeeeEEeecCCCcee
Confidence 45 88886542 1267788899999999999999999999999999 999999888754443 44555443
No 107
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.01 E-value=1.6e-09 Score=74.08 Aligned_cols=67 Identities=15% Similarity=0.247 Sum_probs=55.9
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCC--CCEEEEEcCCCCEEEEeeCCCCc--EEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQT--GTMIATASSKGTLIRVWDTLKKV--QLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~d--g~~l~s~~~d~~~i~i~d~~~~~--~~~~~~~~~~~~~ 75 (78)
+. +||+.+.. .+...++.+|.++|.+++|+|+ |++|++++.||. |++||+.++. .+..+.+|..++.
T Consensus 33 I~-vwd~~~~~---~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~-I~vwd~~~~~~~~~~~~~~h~~~V~ 103 (753)
T 3jro_A 33 IK-IFEVEGET---HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK-VLIWKEENGRWSQIAVHAVHSASVN 103 (753)
T ss_dssp EE-EEEEETTE---EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSC-EEEEEEETTEEEEEEEECCCSSCEE
T ss_pred EE-EEecCCCC---CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCe-EEEEECCCCcccccccccCCCCCeE
Confidence 45 89987432 1377888999999999999998 999999999999 9999999886 6677777777765
No 108
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.01 E-value=1.2e-09 Score=67.12 Aligned_cols=65 Identities=11% Similarity=0.234 Sum_probs=53.8
Q ss_pred eeeEEEcccCCcCCCCCcEEe-cCCccCEEEEEECCC---CCEEEEEcCCCCEEEEeeCCCCc-EEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTI-NAHQSELACLALNQT---GTMIATASSKGTLIRVWDTLKKV-QLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~-~~h~~~i~~v~fs~d---g~~l~s~~~d~~~i~i~d~~~~~-~~~~~~~~~~~~~ 75 (78)
+. +||+.+.. ..... .+|..+|.+++|+|+ |++|++++.|+. |++||+.++. .+..+.+|..++.
T Consensus 46 v~-iw~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~v~ 115 (357)
T 3i2n_A 46 IQ-LYEIQHGD-----LKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN-LHIWNLEAPEMPVYSVKGHKEIIN 115 (357)
T ss_dssp EE-EEEECSSS-----EEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC-EEEECTTSCSSCSEEECCCSSCEE
T ss_pred EE-EEeCCCCc-----ccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe-EEEEeCCCCCccEEEEEecccceE
Confidence 56 89987654 33232 378999999999998 799999999999 9999999887 8888888887765
No 109
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.01 E-value=3.6e-09 Score=65.86 Aligned_cols=57 Identities=25% Similarity=0.439 Sum_probs=48.5
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCC-EEEEEcCCCCEEEEeeCCCCc-EEEEe
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGT-MIATASSKGTLIRVWDTLKKV-QLVEL 67 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~-~l~s~~~d~~~i~i~d~~~~~-~~~~~ 67 (78)
+. +||+.+.. ....+.+|.++|.+++|+|+++ .|++++.|+. |++||++++. .+..+
T Consensus 168 v~-~~d~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~-i~i~d~~~~~~~~~~~ 226 (408)
T 4a11_B 168 VQ-LCDLKSGS-----CSHILQGHRQEILAVSWSPRYDYILATASADSR-VKLWDVRRASGCLITL 226 (408)
T ss_dssp EE-EEESSSSC-----CCEEECCCCSCEEEEEECSSCTTEEEEEETTSC-EEEEETTCSSCCSEEC
T ss_pred EE-EEeCCCcc-----eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCc-EEEEECCCCCcccccc
Confidence 45 89988765 8889999999999999999998 5899999999 9999998765 44444
No 110
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.01 E-value=2.9e-09 Score=68.03 Aligned_cols=63 Identities=14% Similarity=0.214 Sum_probs=52.6
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
+. +||+.+.. ...++.+|.++|.+++|+ ++.+++++.|+. |++||+.+++.+..+.+|..++.
T Consensus 141 i~-vwd~~~~~-----~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~h~~~v~ 203 (445)
T 2ovr_B 141 LK-VWSAVTGK-----CLRTLVGHTGGVWSSQMR--DNIIISGSTDRT-LKVWNAETGECIHTLYGHTSTVR 203 (445)
T ss_dssp EE-EEETTTCC-----EEEECCCCSSCEEEEEEE--TTEEEEEETTSC-EEEEETTTTEEEEEECCCSSCEE
T ss_pred EE-EEECCCCc-----EEEEEcCCCCCEEEEEec--CCEEEEEeCCCe-EEEEECCcCcEEEEECCCCCcEE
Confidence 45 88887665 788888999999999987 568999999998 99999999988888888877665
No 111
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.00 E-value=7.6e-10 Score=70.08 Aligned_cols=64 Identities=11% Similarity=0.246 Sum_probs=50.6
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCcc------------CEEEEEECCCCCEEEEEcCCCCEEEEeeCCC-CcEEEEeeCC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQS------------ELACLALNQTGTMIATASSKGTLIRVWDTLK-KVQLVELRRG 70 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~------------~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~-~~~~~~~~~~ 70 (78)
+. +||+++.... ......+.+|.. +|.+++|+|+|++|++++. +. |++||+++ +.++..+..|
T Consensus 251 i~-iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~-v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 251 IR-LCDMRASALC-DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS-VKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp EE-EEETTTCSSS-CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE-EEEEETTCCSSCSCCEESC
T ss_pred EE-EEECcCCccc-cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce-EEEEeCCCCccccceeecc
Confidence 56 8999876510 112788888886 9999999999999999999 98 99999997 8888888776
Q ss_pred C
Q psy1940 71 S 71 (78)
Q Consensus 71 ~ 71 (78)
.
T Consensus 327 ~ 327 (447)
T 3dw8_B 327 E 327 (447)
T ss_dssp G
T ss_pred c
Confidence 4
No 112
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.00 E-value=2.3e-09 Score=72.60 Aligned_cols=57 Identities=14% Similarity=0.310 Sum_probs=44.3
Q ss_pred CcEEecCCcc-----CEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCc-------EEEEe----eCCCCCeE-EeC
Q psy1940 20 SPVTINAHQS-----ELACLALNQTGTMIATASSKGTLIRVWDTLKKV-------QLVEL----RRGSDPAT-LYW 78 (78)
Q Consensus 20 ~~~~~~~h~~-----~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~-------~~~~~----~~~~~~~~-~~w 78 (78)
+...+. |.. .+.+++|||||++||+|+.||. |++||+.++. .+.++ .+|.+.+. +.|
T Consensus 117 ~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGt-VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVaw 190 (588)
T 2j04_A 117 MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGE-LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVW 190 (588)
T ss_dssp EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSE-EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEE
T ss_pred eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCE-EEEEECCCCccccccceeeeeeecccccccccEEEEEE
Confidence 566666 765 4999999999999999999999 9999999885 36776 34444443 544
No 113
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=98.99 E-value=1.1e-09 Score=70.34 Aligned_cols=67 Identities=18% Similarity=0.094 Sum_probs=52.7
Q ss_pred EEEcccCCcCCCCCcEEecCCccCEEEEEECCC---CCEEEEEcCCCCEEEEeeCCCCcEEEE-eeCCCCCeE
Q psy1940 7 SQDLSSTELSSSSSPVTINAHQSELACLALNQT---GTMIATASSKGTLIRVWDTLKKVQLVE-LRRGSDPAT 75 (78)
Q Consensus 7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~d---g~~l~s~~~d~~~i~i~d~~~~~~~~~-~~~~~~~~~ 75 (78)
+||+.+.... ......+.+|.+.|.+++|+|+ +++|++++.|+. |++||++++..+.. +.+|..++.
T Consensus 175 ~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~-i~vwd~~~~~~~~~~~~~h~~~v~ 245 (450)
T 2vdu_B 175 SIDINSIPEE-KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEH-IKISHYPQCFIVDKWLFGHKHFVS 245 (450)
T ss_dssp EEETTSCCCS-SCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSC-EEEEEESCTTCEEEECCCCSSCEE
T ss_pred EEecCCcccc-cccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCc-EEEEECCCCceeeeeecCCCCceE
Confidence 6777765411 0033467889999999999999 999999999999 99999999988877 446666654
No 114
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=98.98 E-value=7.3e-10 Score=70.46 Aligned_cols=59 Identities=14% Similarity=0.108 Sum_probs=46.1
Q ss_pred eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCC-CEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940 3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTG-TMIATASSKGTLIRVWDTLKKVQLVELR 68 (78)
Q Consensus 3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg-~~l~s~~~d~~~i~i~d~~~~~~~~~~~ 68 (78)
.+. |||+.+.. ....+.+|..++.+++|+|++ ++|++++.|++ |++||+++++......
T Consensus 167 tv~-~Wd~~~~~-----~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~-v~~wd~~t~~~~~~~~ 226 (393)
T 4gq1_A 167 TLI-IWRLTDEG-----PILAGYPLSSPGISVQFRPSNPNQLIVGERNGN-IRIFDWTLNLSAEENS 226 (393)
T ss_dssp EEE-EEEEETTE-----EEEEEEECSSCEEEEEEETTEEEEEEEEETTSE-EEEEETTCCC------
T ss_pred eEE-EEECCCCc-----eeeeecCCCCCcEEEEECCCCCceEEecCCCCE-EEEEECCCCccccccc
Confidence 356 99998765 677777899999999999987 48999999999 9999999887654443
No 115
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=98.97 E-value=3.7e-09 Score=73.85 Aligned_cols=54 Identities=11% Similarity=0.143 Sum_probs=45.7
Q ss_pred EEEcccCCcCCCCCcEEecCC------------------ccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEE
Q psy1940 7 SQDLSSTELSSSSSPVTINAH------------------QSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVE 66 (78)
Q Consensus 7 i~d~~~~~~~~~~~~~~~~~h------------------~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~ 66 (78)
+||+++.. +.+++..| .+.|.+++|+|||++|++++.|+. |++||+++++++..
T Consensus 177 lWd~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~-i~lWd~~~g~~~~~ 248 (902)
T 2oaj_A 177 TYSLVENE-----IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS-LVFWDANSGHMIMA 248 (902)
T ss_dssp EEETTTTE-----EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC-EEEEETTTCCEEEE
T ss_pred EEECCCCc-----eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe-EEEEECCCCcEEEE
Confidence 68887654 66666655 578999999999999999999999 99999999987754
No 116
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=98.96 E-value=4.5e-09 Score=67.49 Aligned_cols=58 Identities=10% Similarity=0.145 Sum_probs=50.7
Q ss_pred eeeEEEcccCCcCCCCCcEE-ecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940 4 LQCSQDLSSTELSSSSSPVT-INAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~-~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~ 69 (78)
+. +||+.+.. .... +.+|.++|.+++|+ +|++|++++.|+. |++||+++++++..+..
T Consensus 222 i~-vwd~~~~~-----~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~-v~vwd~~~~~~~~~~~~ 280 (450)
T 2vdu_B 222 IK-ISHYPQCF-----IVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDK-IFAWDWKTGKNLSTFDY 280 (450)
T ss_dssp EE-EEEESCTT-----CEEEECCCCSSCEEEEEEC-STTEEEEEESSSE-EEEEETTTCCEEEEEEC
T ss_pred EE-EEECCCCc-----eeeeeecCCCCceEEEEEC-CCCEEEEEeCCCe-EEEEECCCCcEeeeecc
Confidence 45 89987765 6666 56899999999999 9999999999999 99999999998888863
No 117
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.96 E-value=6.9e-09 Score=73.11 Aligned_cols=65 Identities=15% Similarity=0.252 Sum_probs=58.4
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECC--CCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQ--TGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~--dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
+. +||+.+.. ...++.+|..+|.+++|+| ++..+++++.|+. |++||++++.++..+.+|..+++
T Consensus 681 v~-vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~-v~vwd~~~~~~~~~~~~h~~~v~ 747 (1249)
T 3sfz_A 681 VK-IWDSATGK-----LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF-LKLWDLNQKECRNTMFGHTNSVN 747 (1249)
T ss_dssp EE-EEETTTCC-----EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSC-EEEEETTSSSEEEEECCCSSCEE
T ss_pred EE-EEECCCCc-----eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCe-EEEEECCCcchhheecCCCCCEE
Confidence 55 89998765 8899999999999999999 5568999999999 99999999999999998888776
No 118
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=98.96 E-value=8.9e-10 Score=70.01 Aligned_cols=62 Identities=10% Similarity=0.201 Sum_probs=52.3
Q ss_pred eeeEEEcccCCcCCCCCcEEec-CCccCEEEEEE----CCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTIN-AHQSELACLAL----NQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSD 72 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~-~h~~~i~~v~f----s~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~ 72 (78)
+. +||++... +..++. .|..+|.+++| +|++.+|++++.|+. |++||+++++++..+.++..
T Consensus 238 i~-iwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~ 304 (437)
T 3gre_A 238 ID-IWDIRFNV-----LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF-LTIWNFVKGHCQYAFINSDE 304 (437)
T ss_dssp EE-EEETTTTE-----EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE-EEEEETTTTEEEEEEESSSS
T ss_pred EE-EEEcCCcc-----EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc-EEEEEcCCCcEEEEEEcCCC
Confidence 56 89998765 778776 78889999955 457889999999999 99999999999999987653
No 119
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=98.94 E-value=8.9e-09 Score=64.39 Aligned_cols=66 Identities=14% Similarity=0.188 Sum_probs=52.7
Q ss_pred eeeEEEcccCCcCCCCCcEEecCC---ccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAH---QSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW 78 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h---~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w 78 (78)
+. +||+... ....+..| ...|.+++|+|+++.|++++.|+. |++||+ ++..+..+..|...+. +.|
T Consensus 143 i~-iwd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~d~-~~~~~~~~~~h~~~v~~~~~ 212 (383)
T 3ei3_B 143 TT-LRDFSGS------VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGR-LLLLGL-DGHEIFKEKLHKAKVTHAEF 212 (383)
T ss_dssp EE-EEETTSC------EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSE-EEEEET-TSCEEEEEECSSSCEEEEEE
T ss_pred EE-EEECCCC------ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCC-EEEEEC-CCCEEEEeccCCCcEEEEEE
Confidence 45 8998742 55556544 488999999999999999999999 999999 5778888888877765 443
No 120
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=98.92 E-value=4.2e-09 Score=66.02 Aligned_cols=67 Identities=15% Similarity=0.230 Sum_probs=52.6
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCC----CcEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLK----KVQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~----~~~~~~~~~~~~~~~ 75 (78)
+. +||+.+.... +....+ .|...|.+++|+|+|++|++++.|+. |++||+.+ ...+..+.+|..++.
T Consensus 47 v~-iw~~~~~~~~--~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~-v~vw~~~~~~~~~~~~~~~~~h~~~v~ 117 (416)
T 2pm9_A 47 LE-LWSLLAADSE--KPIASL-QVDSKFNDLDWSHNNKIIAGALDNGS-LELYSTNEANNAINSMARFSNHSSSVK 117 (416)
T ss_dssp CE-EEESSSGGGC--SCSCCC-CCSSCEEEEEECSSSSCEEEEESSSC-EEEECCSSTTSCCCEEEECCCSSSCCC
T ss_pred EE-EEEccCCCCC--cEEEEE-ecCCceEEEEECCCCCeEEEEccCCe-EEEeecccccccccchhhccCCccceE
Confidence 56 8998765411 133333 58899999999999999999999999 99999987 357788888777655
No 121
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.90 E-value=2e-08 Score=64.12 Aligned_cols=63 Identities=19% Similarity=0.291 Sum_probs=46.8
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
+. +||+.+.. ...++.+|.++|.+++| +++++++++.|+. |++||+++++.+..+.+|...+.
T Consensus 261 i~-iwd~~~~~-----~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~v~ 323 (445)
T 2ovr_B 261 VK-VWDPETET-----CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS-IRVWDVETGNCIHTLTGHQSLTS 323 (445)
T ss_dssp EE-EEEGGGTE-----EEEEECCCSSCEEEEEE--CSSEEEEEETTSC-EEEEETTTCCEEEEECCCCSCEE
T ss_pred EE-EEECCCCc-----EeEEecCCCCceEEEEE--CCCEEEEEeCCCe-EEEEECCCCCEEEEEcCCcccEE
Confidence 44 77776654 67777778888888887 6778888888888 88888888887777776665543
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=98.90 E-value=1.1e-08 Score=63.95 Aligned_cols=67 Identities=16% Similarity=0.249 Sum_probs=53.7
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEE-EEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEEeC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMI-ATASSKGTLIRVWDTLKKVQLVELRRGSDPATLYW 78 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l-~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~w 78 (78)
+. +||+.+.. ....+..|. .+.+++|+|+|+++ ++++.|+. |++||+.+++.+..+..+..+..+.|
T Consensus 14 v~-v~d~~~~~-----~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~-i~v~d~~~~~~~~~~~~~~~v~~~~~ 81 (391)
T 1l0q_A 14 IS-VIDVTSNK-----VTATIPVGS-NPMGAVISPDGTKVYVANAHSND-VSIIDTATNNVIATVPAGSSPQGVAV 81 (391)
T ss_dssp EE-EEETTTTE-----EEEEEECSS-SEEEEEECTTSSEEEEEEGGGTE-EEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred EE-EEECCCCe-----EEEEeecCC-CcceEEECCCCCEEEEECCCCCe-EEEEECCCCeEEEEEECCCCccceEE
Confidence 45 89987765 777787775 47999999999987 67778999 99999999999988887765544543
No 123
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=98.89 E-value=1.2e-08 Score=62.47 Aligned_cols=67 Identities=12% Similarity=0.026 Sum_probs=52.8
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCC-EEEEEcCCCCEEEEeeC-CCCcEEEEeeC--CCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGT-MIATASSKGTLIRVWDT-LKKVQLVELRR--GSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~-~l~s~~~d~~~i~i~d~-~~~~~~~~~~~--~~~~~~ 75 (78)
+. +||+..... ......+.+|..+|.+++|+|+++ +|++++.|+. |++||+ .++.. ..+.+ |..++.
T Consensus 35 v~-iw~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~~wd~~~~~~~-~~~~~~~~~~~v~ 105 (342)
T 1yfq_A 35 LT-VYKFDIQAK--NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE-ILKVDLIGSPSF-QALTNNEANLGIC 105 (342)
T ss_dssp EE-EEEEETTTT--EEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC-EEEECSSSSSSE-EECBSCCCCSCEE
T ss_pred EE-EEEeCCCCc--cccceeeeecCCceEEEEECCCCCcEEEEEcCCCe-EEEEEeccCCce-EeccccCCCCceE
Confidence 45 899876531 113556668999999999999999 9999999999 999999 77765 66676 776665
No 124
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=98.87 E-value=1.9e-09 Score=73.63 Aligned_cols=57 Identities=26% Similarity=0.352 Sum_probs=45.1
Q ss_pred cEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCC--CCcEEEEeeCCCCCeE-EeC
Q psy1940 21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTL--KKVQLVELRRGSDPAT-LYW 78 (78)
Q Consensus 21 ~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~--~~~~~~~~~~~~~~~~-~~w 78 (78)
..++.+|.++|++++|+|+|++|++++.||. |++||+. ++..+..+.+|..++. +.|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~-I~vwd~~~~~~~~~~~l~~h~~~V~~l~~ 61 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKT-IKIFEVEGETHKLIDTLTGHEGPVWRVDW 61 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTE-EEEEEEETTEEEEEEEECCCSSCEEEEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCc-EEEEecCCCCCccceeccCCcCceEEEEe
Confidence 3467899999999999999999999999999 9999988 5577788888888775 443
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=98.80 E-value=5.2e-08 Score=60.85 Aligned_cols=67 Identities=18% Similarity=0.212 Sum_probs=52.4
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEE-EcCCCCEEEEeeCCCCcEEEEeeCCCCCeEEeC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIAT-ASSKGTLIRVWDTLKKVQLVELRRGSDPATLYW 78 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s-~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~w 78 (78)
+. +||+.+.. ....+..+. .+.+++|+|+|++|+. ++.++. |++||+.+++.+..+..+..+..+.|
T Consensus 56 i~-v~d~~~~~-----~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~-v~v~d~~~~~~~~~~~~~~~~~~~~~ 123 (391)
T 1l0q_A 56 VS-IIDTATNN-----VIATVPAGS-SPQGVAVSPDGKQVYVTNMASST-LSVIDTTSNTVAGTVKTGKSPLGLAL 123 (391)
T ss_dssp EE-EEETTTTE-----EEEEEECSS-SEEEEEECTTSSEEEEEETTTTE-EEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred EE-EEECCCCe-----EEEEEECCC-CccceEECCCCCEEEEEECCCCE-EEEEECCCCeEEEEEeCCCCcceEEE
Confidence 45 88887665 677776555 8999999999998854 556788 99999999999888887766655554
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=98.80 E-value=3.5e-08 Score=62.40 Aligned_cols=67 Identities=15% Similarity=0.128 Sum_probs=54.0
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEE-EEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEEe
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIA-TASSKGTLIRVWDTLKKVQLVELRRGSDPATLY 77 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~-s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~ 77 (78)
+. +||+.+.. ....+..|...+.+++|+|+|+.++ +++.|+. |++||+++++.+..++.+..+..+.
T Consensus 193 v~-~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-i~~~d~~~~~~~~~~~~~~~~~~~~ 260 (433)
T 3bws_A 193 VH-VFDLKTLA-----YKATVDLTGKWSKILLYDPIRDLVYCSNWISED-ISVIDRKTKLEIRKTDKIGLPRGLL 260 (433)
T ss_dssp EE-EEETTTCC-----EEEEEECSSSSEEEEEEETTTTEEEEEETTTTE-EEEEETTTTEEEEECCCCSEEEEEE
T ss_pred EE-EEECCCce-----EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCc-EEEEECCCCcEEEEecCCCCceEEE
Confidence 45 88987655 7788888999999999999999885 5558898 9999999999888887665544444
No 127
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=98.80 E-value=2.2e-08 Score=67.89 Aligned_cols=67 Identities=7% Similarity=0.028 Sum_probs=48.3
Q ss_pred eeeEEEcccCCcCCCC--CcEEe----cCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcE---EEEee-CCCCC
Q psy1940 4 LQCSQDLSSTELSSSS--SPVTI----NAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQ---LVELR-RGSDP 73 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~--~~~~~----~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~---~~~~~-~~~~~ 73 (78)
++ +||+......+.+ ...++ .+|.+.|.+++|+||| +++++.|++ |++||+.++.. ..+++ +|...
T Consensus 153 Vk-IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~t-VrlWd~~~~~~~~~~~tL~~~h~~~ 228 (588)
T 2j04_A 153 LQ-FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNS-VFSMTVSASSHQPVSRMIQNASRRK 228 (588)
T ss_dssp EE-EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCC-EEEECCCSSSSCCCEEEEECCCSSC
T ss_pred EE-EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCe-EEEEECCCCccccceeeecccccCc
Confidence 56 8998765311111 25776 6788899999999999 888999999 99999988773 35664 45433
Q ss_pred e
Q psy1940 74 A 74 (78)
Q Consensus 74 ~ 74 (78)
+
T Consensus 229 V 229 (588)
T 2j04_A 229 I 229 (588)
T ss_dssp C
T ss_pred E
Confidence 3
No 128
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=98.75 E-value=1.8e-08 Score=63.69 Aligned_cols=64 Identities=6% Similarity=0.093 Sum_probs=52.6
Q ss_pred eeeEEEcccCCcCCCCCcE-----EecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCe
Q psy1940 4 LQCSQDLSSTELSSSSSPV-----TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPA 74 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~-----~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~ 74 (78)
+. +||+.+.. ... .+.+|.+.|.+++|+|+|+.+++++.|+. |++||+++++.+..+..+...+
T Consensus 146 i~-~~d~~~g~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~-v~~~d~~~~~~~~~~~~~~~~~ 214 (433)
T 3bws_A 146 MD-VLDINSGQ-----TVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA-VHVFDLKTLAYKATVDLTGKWS 214 (433)
T ss_dssp EE-EEETTTCC-----EEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE-EEEEETTTCCEEEEEECSSSSE
T ss_pred EE-EEECCCCe-----EeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE-EEEEECCCceEEEEEcCCCCCe
Confidence 45 88887654 444 34588999999999999999999999999 9999999999988888665444
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=98.75 E-value=8e-08 Score=63.97 Aligned_cols=65 Identities=12% Similarity=0.202 Sum_probs=53.3
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeC--CCCcEEEEeeCCCCCeEE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDT--LKKVQLVELRRGSDPATL 76 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~--~~~~~~~~~~~~~~~~~~ 76 (78)
+. +||..+.. +..++..+.. +.+++|+|||++|++++.|+. |++||+ .+++++.+++.+..+..+
T Consensus 161 V~-v~D~~t~~-----~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~-V~v~D~~~~t~~~~~~i~~g~~p~~v 227 (543)
T 1nir_A 161 IA-LVDGDSKK-----IVKVIDTGYA-VHISRMSASGRYLLVIGRDAR-IDMIDLWAKEPTKVAEIKIGIEARSV 227 (543)
T ss_dssp EE-EEETTTCC-----EEEEEECSTT-EEEEEECTTSCEEEEEETTSE-EEEEETTSSSCEEEEEEECCSEEEEE
T ss_pred EE-EEECCCce-----EEEEEecCcc-cceEEECCCCCEEEEECCCCe-EEEEECcCCCCcEEEEEecCCCcceE
Confidence 45 78887765 7888874433 889999999999999999998 999999 888988888876666554
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=98.71 E-value=1.4e-07 Score=60.59 Aligned_cols=61 Identities=10% Similarity=0.083 Sum_probs=48.0
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCC---CEEEEeeCCCCcEEEEeeCCCCC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKG---TLIRVWDTLKKVQLVELRRGSDP 73 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~---~~i~i~d~~~~~~~~~~~~~~~~ 73 (78)
+. +||+.. ...+.+.+|...+.+++|||||+.|++++.++ . |++||+.+++... +..+...
T Consensus 161 i~-i~d~~g------~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~-i~~~d~~tg~~~~-l~~~~~~ 224 (415)
T 2hqs_A 161 LR-VSDYDG------YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSA-LVIQTLANGAVRQ-VASFPRH 224 (415)
T ss_dssp EE-EEETTS------CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCE-EEEEETTTCCEEE-EECCSSC
T ss_pred EE-EEcCCC------CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcE-EEEEECCCCcEEE-eecCCCc
Confidence 45 788742 26778888999999999999999999999885 7 9999999988754 4444433
No 131
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.56 E-value=3.9e-07 Score=57.67 Aligned_cols=63 Identities=13% Similarity=0.238 Sum_probs=51.1
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC--cEEEEe-eCCCCCeEE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK--VQLVEL-RRGSDPATL 76 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~--~~~~~~-~~~~~~~~~ 76 (78)
+. +||+.+.. .+.++..+. ..+++|+|||++|+++.. +. |.+||+.++ +.+..+ ..+..|..+
T Consensus 288 v~-viD~~t~~-----~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~-v~v~D~~t~~l~~~~~i~~~G~~P~~~ 353 (361)
T 2oiz_A 288 IW-VMDTKTKQ-----RVARIPGRD--ALSMTIDQQRNLMLTLDG-GN-VNVYDISQPEPKLLRTIEGAAEASLQV 353 (361)
T ss_dssp EE-EEETTTTE-----EEEEEECTT--CCEEEEETTTTEEEEECS-SC-EEEEECSSSSCEEEEEETTSCSSEEEE
T ss_pred EE-EEECCCCc-----EEEEEecCC--eeEEEECCCCCEEEEeCC-Ce-EEEEECCCCcceeeEEeccCCCCcEEE
Confidence 45 67877665 788888776 899999999999999887 88 999999999 999887 455555544
No 132
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=98.49 E-value=3.1e-07 Score=54.54 Aligned_cols=58 Identities=5% Similarity=-0.056 Sum_probs=44.7
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCC-CcEEEEeeCC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLK-KVQLVELRRG 70 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~-~~~~~~~~~~ 70 (78)
+. +||+.+. ....+..|...+.+++|+|||++|++++ ++. |.+||+.+ ++.......+
T Consensus 24 i~-~~d~~~~------~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~-i~~~d~~~~~~~~~~~~~~ 82 (297)
T 2ojh_A 24 IE-IFNIRTR------KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGL-LYRLSLAGDPSPEKVDTGF 82 (297)
T ss_dssp EE-EEETTTT------EEEEEEEESSCCEEEEECTTSSEEEEEE-TTE-EEEEESSSCCSCEECCCTT
T ss_pred EE-EEeCCCC------ceeeeccCCcceEeeEECCCCCEEEEEc-CCe-EEEEeCCCCCCceEecccc
Confidence 45 7787654 3345566888999999999999999987 777 99999998 7766555444
No 133
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=98.46 E-value=1.2e-06 Score=53.56 Aligned_cols=64 Identities=13% Similarity=0.070 Sum_probs=48.5
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcC-CCCEEEEeeCCCCcE-EEEeeCCCCCeE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASS-KGTLIRVWDTLKKVQ-LVELRRGSDPAT 75 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~-d~~~i~i~d~~~~~~-~~~~~~~~~~~~ 75 (78)
+. +||+.+.. ....+..+..++ .++|+|||+++++++. ++. |.+||..+++. ...+..+..+..
T Consensus 22 v~-~~d~~~~~-----~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~-i~~~d~~~~~~~~~~~~~~~~~~~ 87 (331)
T 3u4y_A 22 IS-FFSTDTLE-----ILNQITLGYDFV-DTAITSDCSNVVVTSDFCQT-LVQIETQLEPPKVVAIQEGQSSMA 87 (331)
T ss_dssp EE-EEETTTCC-----EEEEEECCCCEE-EEEECSSSCEEEEEESTTCE-EEEEECSSSSCEEEEEEECSSCCC
T ss_pred EE-EEeCcccc-----eeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCe-EEEEECCCCceeEEecccCCCCcc
Confidence 45 78887665 666666666666 9999999997776665 778 99999999887 777776666655
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=98.45 E-value=1.2e-06 Score=53.48 Aligned_cols=66 Identities=14% Similarity=0.147 Sum_probs=50.5
Q ss_pred EEEcccCCcCCCCC-cEEecCCccCEEEEEECCCCCEEEEEcCCC---CEEEEeeCCCCcEEEEeeCCCCCeEEeC
Q psy1940 7 SQDLSSTELSSSSS-PVTINAHQSELACLALNQTGTMIATASSKG---TLIRVWDTLKKVQLVELRRGSDPATLYW 78 (78)
Q Consensus 7 i~d~~~~~~~~~~~-~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~---~~i~i~d~~~~~~~~~~~~~~~~~~~~w 78 (78)
+||+.+.. . ...+..+..+..+++|+|||++++++..++ . |.+||+.+++.+..++.+..+..+.|
T Consensus 66 ~~d~~~~~-----~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~-i~v~d~~~~~~~~~~~~~~~~~~~~~ 135 (331)
T 3u4y_A 66 QIETQLEP-----PKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFN-MQSYSFLKNKFISTIPIPYDAVGIAI 135 (331)
T ss_dssp EEECSSSS-----CEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCE-EEEEETTTTEEEEEEECCTTEEEEEE
T ss_pred EEECCCCc-----eeEEecccCCCCccceEECCCCCEEEEecCCCCccc-EEEEECCCCCeEEEEECCCCccceEE
Confidence 67776654 4 666777777776699999999999655553 7 99999999999888887766655543
No 135
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=98.41 E-value=1.1e-06 Score=53.67 Aligned_cols=59 Identities=14% Similarity=0.224 Sum_probs=46.3
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG 70 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~ 70 (78)
+. +||+.+.. ....+..+ ..+.+++|+|||++|++++.++. |.+||+.+++.+..++.+
T Consensus 277 v~-~~d~~~~~-----~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~-v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 277 LA-KYDLKQRK-----LIKAANLD-HTYYCVAFDKKGDKLYLGGTFND-LAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EE-EEETTTTE-----EEEEEECS-SCCCEEEECSSSSCEEEESBSSE-EEEEETTTTEEEEEEECS
T ss_pred EE-EEECccCe-----EEEEEcCC-CCccceEECCCCCEEEEecCCCe-EEEEeccccceeeeeecC
Confidence 45 78876654 55555533 34678999999999999988998 999999999998888754
No 136
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=98.39 E-value=1.5e-06 Score=52.82 Aligned_cols=59 Identities=14% Similarity=0.156 Sum_probs=46.9
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG 70 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~ 70 (78)
+. +||+.+.. ....+..+ ..+.+++|+|||++|++++.++. |.+||+.+++.+..++.+
T Consensus 262 v~-~~d~~~~~-----~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~-i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 262 LE-SFDLEKNA-----SIKRVPLP-HSYYSVNVSTDGSTVWLGGALGD-LAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EE-EEETTTTE-----EEEEEECS-SCCCEEEECTTSCEEEEESBSSE-EEEEETTTCCEEEEEECG
T ss_pred EE-EEECCCCc-----CcceecCC-CceeeEEECCCCCEEEEEcCCCc-EEEEECcCCcEEEEEEcC
Confidence 45 78876654 55555543 45688999999999999999999 999999999998888754
No 137
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=98.30 E-value=5.7e-06 Score=50.17 Aligned_cols=66 Identities=15% Similarity=0.081 Sum_probs=48.3
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEEe
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLY 77 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~ 77 (78)
+. +||+.+.. .....+..+...+.+++|+|||++++++ ++. |.+||+.+++.+..+..+..+..+.
T Consensus 221 v~-~~d~~~~~----~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~-v~~~d~~~~~~~~~~~~~~~~~~~~ 286 (337)
T 1pby_B 221 LL-TMDLETGE----MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV-LESFDLEKNASIKRVPLPHSYYSVN 286 (337)
T ss_dssp EE-EEETTTCC----EEEEEEEECSSCEEEEEECTTSSEEEEE--ESE-EEEEETTTTEEEEEEECSSCCCEEE
T ss_pred eE-EEeCCCCC----ceEeecCCCCCceeeEEECCCCCEEEEe--CCe-EEEEECCCCcCcceecCCCceeeEE
Confidence 44 67776553 1133345566778899999999999988 688 9999999998888877655554443
No 138
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=98.24 E-value=1e-05 Score=51.93 Aligned_cols=61 Identities=18% Similarity=0.210 Sum_probs=44.1
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEE-EEcCCC--CEEEEeeCCCCcEEEEeeCCCCC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIA-TASSKG--TLIRVWDTLKKVQLVELRRGSDP 73 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~-s~~~d~--~~i~i~d~~~~~~~~~~~~~~~~ 73 (78)
+. +||+.+.. ...+..|.+.+.+++|+|||+.|+ +++.++ . |.+||+++++. ..+..+...
T Consensus 205 i~-~~d~~tg~------~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~-i~~~d~~~~~~-~~l~~~~~~ 268 (415)
T 2hqs_A 205 LV-IQTLANGA------VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLN-LYVMDLASGQI-RQVTDGRSN 268 (415)
T ss_dssp EE-EEETTTCC------EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCE-EEEEETTTCCE-EECCCCSSC
T ss_pred EE-EEECCCCc------EEEeecCCCcccCEEEcCCCCEEEEEEecCCCce-EEEEECCCCCE-EeCcCCCCc
Confidence 45 78887653 345677888999999999999888 666554 5 88889988876 445444433
No 139
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=98.23 E-value=8.6e-06 Score=53.75 Aligned_cols=56 Identities=11% Similarity=0.086 Sum_probs=45.1
Q ss_pred EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCC--CEEEEeeCCCCcEEEEeeCC
Q psy1940 7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKG--TLIRVWDTLKKVQLVELRRG 70 (78)
Q Consensus 7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~--~~i~i~d~~~~~~~~~~~~~ 70 (78)
+||+... ....+..|.+.+.+++|||||+.|++++.++ . |.+||+.++... .+..+
T Consensus 179 ~~d~~~g------~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~-i~~~d~~~~~~~-~~~~~ 236 (582)
T 3o4h_A 179 TSNLSSG------GLRVFDSGEGSFSSASISPGMKVTAGLETAREAR-LVTVDPRDGSVE-DLELP 236 (582)
T ss_dssp EEETTTC------CCEEECCSSCEEEEEEECTTSCEEEEEECSSCEE-EEEECTTTCCEE-ECCCS
T ss_pred EEcCCCC------CceEeecCCCccccceECCCCCEEEEccCCCeeE-EEEEcCCCCcEE-EccCC
Confidence 5666543 4457788888999999999999999888888 7 999999988876 55544
No 140
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=98.20 E-value=1.1e-05 Score=56.79 Aligned_cols=53 Identities=11% Similarity=0.093 Sum_probs=44.0
Q ss_pred CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCC
Q psy1940 20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP 73 (78)
Q Consensus 20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~ 73 (78)
....+.+|...+..++|||||+.|++++.++. +++||+.+++.......+...
T Consensus 370 ~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~-v~~~d~~tg~~~~~~~~~~~~ 422 (1045)
T 1k32_A 370 KAEKFEENLGNVFAMGVDRNGKFAVVANDRFE-IMTVDLETGKPTVIERSREAM 422 (1045)
T ss_dssp CEEECCCCCCSEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEECSSSC
T ss_pred CceEecCCccceeeeEECCCCCEEEEECCCCe-EEEEECCCCceEEeccCCCCC
Confidence 34455578889999999999999999999999 999999999887777555444
No 141
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=98.20 E-value=2.9e-06 Score=59.75 Aligned_cols=60 Identities=13% Similarity=0.225 Sum_probs=46.2
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCC----------CEEEEeeCCCCcEEEEeeCCC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKG----------TLIRVWDTLKKVQLVELRRGS 71 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~----------~~i~i~d~~~~~~~~~~~~~~ 71 (78)
+. +||+.+.. ....+.+|.+.+.+++|||||++|++++.++ . |.+||+.+++ +..+..+.
T Consensus 402 v~-~~d~~tg~-----~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~-i~l~d~~~g~-~~~l~~~~ 471 (1045)
T 1k32_A 402 IM-TVDLETGK-----PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA-IHVYDMEGRK-IFAATTEN 471 (1045)
T ss_dssp EE-EEETTTCC-----EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE-EEEEETTTTE-EEECSCSS
T ss_pred EE-EEECCCCc-----eEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCe-EEEEECCCCc-EEEeeCCC
Confidence 45 78887654 5556668999999999999999999887654 7 9999999887 45554443
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=98.14 E-value=1.3e-05 Score=48.66 Aligned_cols=70 Identities=13% Similarity=0.092 Sum_probs=45.8
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEc-CCCCEEEEe--eCCCC--cEEEEeeCCCCCeEEe
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATAS-SKGTLIRVW--DTLKK--VQLVELRRGSDPATLY 77 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~-~d~~~i~i~--d~~~~--~~~~~~~~~~~~~~~~ 77 (78)
+. +||+.... +..+....+..+.. +.+++|+|+|++|++++ .++. +.+| |..++ +.+..++.+..|..++
T Consensus 255 i~-v~d~~~~~-~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~-v~v~~~d~~~g~~~~~~~~~~g~~p~~i~ 329 (343)
T 1ri6_A 255 IT-VFSVSEDG-SVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHH-ISVYEIVGEQGLLHEKGRYAVGQGPMWVV 329 (343)
T ss_dssp EE-EEEECTTS-CCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCE-EEEEEEETTTTEEEEEEEEECSSSCCEEE
T ss_pred EE-EEEEcCCC-CceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCe-EEEEEEcCCCceeeEccccccCCCCeeEE
Confidence 44 78876321 11124444555544 78899999999888887 5788 9999 55566 3456666666676654
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=98.13 E-value=1e-05 Score=49.50 Aligned_cols=57 Identities=19% Similarity=0.176 Sum_probs=46.5
Q ss_pred EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940 7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~ 69 (78)
+||+.+.. ....+..+...+.+++|+|||+.|++++.++. +.+||..+++.+..+..
T Consensus 168 ~~d~~~~~-----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-i~~~d~~~~~~~~~~~~ 224 (353)
T 3vgz_A 168 VVDGGNIK-----LKTAIQNTGKMSTGLALDSEGKRLYTTNADGE-LITIDTADNKILSRKKL 224 (353)
T ss_dssp EEETTTTE-----EEEEECCCCTTCCCCEEETTTTEEEEECTTSE-EEEEETTTTEEEEEEEC
T ss_pred EEcCCCCc-----eEEEecCCCCccceEEECCCCCEEEEEcCCCe-EEEEECCCCeEEEEEEc
Confidence 67766554 66667656666889999999999999999999 99999999988877764
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=98.11 E-value=2.5e-05 Score=47.75 Aligned_cols=58 Identities=10% Similarity=0.050 Sum_probs=44.1
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccC---------EEEEEECCCCCEEEEEc--CCCCEEEEeeCCCCcEEEEee
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSE---------LACLALNQTGTMIATAS--SKGTLIRVWDTLKKVQLVELR 68 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~---------i~~v~fs~dg~~l~s~~--~d~~~i~i~d~~~~~~~~~~~ 68 (78)
+. +||..+.. ....+..+... +.+++|+|+|+.+++++ .++. |.+||..+++.+..++
T Consensus 113 v~-~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~-i~~~d~~~~~~~~~~~ 181 (353)
T 3vgz_A 113 VT-AIDAKTGE-----VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESV-IWVVDGGNIKLKTAIQ 181 (353)
T ss_dssp EE-EEETTTCC-----EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCE-EEEEETTTTEEEEEEC
T ss_pred EE-EEeCCCCe-----eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCce-EEEEcCCCCceEEEec
Confidence 44 67776654 56666654322 68899999999888776 4788 9999999999888887
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=98.09 E-value=7.3e-06 Score=54.98 Aligned_cols=53 Identities=8% Similarity=0.014 Sum_probs=41.9
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCcc---CEEEEEECCCCCEEEEEcCC---------CCEEEEeeCCCCcE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQS---ELACLALNQTGTMIATASSK---------GTLIRVWDTLKKVQ 63 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~---~i~~v~fs~dg~~l~s~~~d---------~~~i~i~d~~~~~~ 63 (78)
+. +||+.+.. ....+..|.. .|.+++|||||++|++++.+ +. +.+||+.++..
T Consensus 39 i~-~~d~~~g~-----~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~-i~~~d~~~~~~ 103 (723)
T 1xfd_A 39 VR-LWNVETNT-----STVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY-YVLSKIPHGDP 103 (723)
T ss_dssp EE-EBCGGGCC-----CEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE-EEEEESSSCCC
T ss_pred EE-EEECCCCc-----EEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee-EEEEECCCCce
Confidence 45 78887665 6666776664 48999999999999999775 66 88999998875
No 146
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=98.08 E-value=2e-05 Score=46.58 Aligned_cols=60 Identities=8% Similarity=0.162 Sum_probs=43.1
Q ss_pred EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEc-CCCCEEEEeeCC-CCcEEEEeeCCC
Q psy1940 7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATAS-SKGTLIRVWDTL-KKVQLVELRRGS 71 (78)
Q Consensus 7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~-~d~~~i~i~d~~-~~~~~~~~~~~~ 71 (78)
+|++.... .....+..|...+.+++|+|+|+.|+.++ .++. +++|++. .+..+..+..+.
T Consensus 155 l~~~~~~~----~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~ 216 (297)
T 2ojh_A 155 IYSMDIDS----GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQ-MQIWRVRVDGSSVERITDSA 216 (297)
T ss_dssp EEEEETTT----CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSS-CEEEEEETTSSCEEECCCCS
T ss_pred EEEEECCC----CcceEcccCCCccccceECCCCCEEEEEecCCCC-ccEEEECCCCCCcEEEecCC
Confidence 67764332 25566777888999999999999888765 5888 9999876 455555555443
No 147
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.08 E-value=3.5e-05 Score=51.89 Aligned_cols=65 Identities=15% Similarity=0.266 Sum_probs=50.8
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCC--CCcEEEEeeCCCCCeEE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTL--KKVQLVELRRGSDPATL 76 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~--~~~~~~~~~~~~~~~~~ 76 (78)
+. ++|..+.. .+.++... ..+..++|||||+++++++.|+. |.+||+. +++.+.+++.+..|..+
T Consensus 179 V~-viD~~t~~-----v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~-V~viD~~~~t~~~v~~i~~G~~P~~i 245 (567)
T 1qks_A 179 IA-LIDGSTYE-----IKTVLDTG-YAVHISRLSASGRYLFVIGRDGK-VNMIDLWMKEPTTVAEIKIGSEARSI 245 (567)
T ss_dssp EE-EEETTTCC-----EEEEEECS-SCEEEEEECTTSCEEEEEETTSE-EEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred EE-EEECCCCe-----EEEEEeCC-CCccceEECCCCCEEEEEcCCCe-EEEEECCCCCCcEeEEEecCCCCcee
Confidence 45 67776654 66677643 35678999999999999999999 9999996 78888888877666554
No 148
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=98.07 E-value=2.4e-05 Score=47.49 Aligned_cols=69 Identities=3% Similarity=-0.007 Sum_probs=45.1
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCC-CCEEEEeeCC--CCc--EEEEeeCCCCCeEEe
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSK-GTLIRVWDTL--KKV--QLVELRRGSDPATLY 77 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d-~~~i~i~d~~--~~~--~~~~~~~~~~~~~~~ 77 (78)
++ +||+.... ..+....+ .|...+.+++|+|+|++|++++.+ +. |.+||+. ++. .+..+..+..+..+.
T Consensus 17 v~-~~~~~~~~--~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (343)
T 1ri6_A 17 IH-VWNLNHEG--ALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFR-VLAYRIAPDDGALTFAAESALPGSLTHIS 90 (343)
T ss_dssp EE-EEEECTTS--CEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTE-EEEEEECTTTCCEEEEEEEECSSCCSEEE
T ss_pred EE-EEEECCCC--cEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCe-EEEEEecCCCCceeeccccccCCCCcEEE
Confidence 45 78875321 11123333 466778899999999999988887 88 9999987 554 445555444444444
No 149
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=98.02 E-value=3.1e-05 Score=51.56 Aligned_cols=58 Identities=9% Similarity=0.023 Sum_probs=46.4
Q ss_pred eeeEEEc--ccCCcCCCCCcEEecCCccCEEEEEECC----CCCEEEEEcC-CCCEEEEeeCCCCcEEEEeeC
Q psy1940 4 LQCSQDL--SSTELSSSSSPVTINAHQSELACLALNQ----TGTMIATASS-KGTLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 4 ~~~i~d~--~~~~~~~~~~~~~~~~h~~~i~~v~fs~----dg~~l~s~~~-d~~~i~i~d~~~~~~~~~~~~ 69 (78)
+. +||+ .+.. ...++.. ...+..++|+| ||++|+++.. +++ |.+||..+++++..++.
T Consensus 202 V~-v~D~~~~t~~-----~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~-v~v~D~~t~~~~~~i~~ 266 (543)
T 1nir_A 202 ID-MIDLWAKEPT-----KVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQ-FAIMDGETLEPKQIVST 266 (543)
T ss_dssp EE-EEETTSSSCE-----EEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSE-EEEEETTTCCEEEEEEC
T ss_pred EE-EEECcCCCCc-----EEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCe-EEEEeccccccceeecc
Confidence 45 8898 4443 6777774 44568999999 9999999885 788 99999999999888864
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=97.95 E-value=3.2e-05 Score=47.64 Aligned_cols=55 Identities=7% Similarity=0.039 Sum_probs=39.2
Q ss_pred EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCC-CCEEEEe--eCCCCcEE
Q psy1940 7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSK-GTLIRVW--DTLKKVQL 64 (78)
Q Consensus 7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d-~~~i~i~--d~~~~~~~ 64 (78)
+||+.... ..+....+..+...+..++|+|||++|++++.+ +. +.+| |..+|+..
T Consensus 266 v~~~~~~g--~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 266 VFAVTADG--HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDN-ATLYARDLTSGKLS 323 (347)
T ss_dssp EEEECGGG--CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTE-EEEEEECTTTCCEE
T ss_pred EEEECCCC--cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCc-EEEEEEeCCCCeEE
Confidence 78876321 113555666666678899999999988888765 77 9999 66667644
No 151
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=97.90 E-value=5.1e-05 Score=51.11 Aligned_cols=61 Identities=15% Similarity=0.096 Sum_probs=44.0
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG 70 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~ 70 (78)
+. +||+..... .....+..|...+..++|||||++|+.++. +. |.+||+.++........+
T Consensus 131 i~-~~d~~~~~~---~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~-i~~~d~~~g~~~~~~~~~ 191 (741)
T 2ecf_A 131 LY-LYDLKQEGK---AAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RN-LWVIDLASGRQMQLTADG 191 (741)
T ss_dssp EE-EEESSSCST---TSCCBCCCSSSCEEEEEECTTSSEEEEEET-TE-EEEEETTTTEEEECCCCC
T ss_pred EE-EEECCCCCc---ceEEEcccCCcccccccCCCCCCEEEEEeC-Cc-EEEEecCCCCEEEeccCC
Confidence 44 778765410 023446677888999999999999999874 57 999999988766554433
No 152
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=97.89 E-value=5.3e-06 Score=55.85 Aligned_cols=53 Identities=9% Similarity=0.111 Sum_probs=40.6
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCcc---CEEEEEECCCCCEEEEEcC---------CCCEEEEeeCCCCcE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQS---ELACLALNQTGTMIATASS---------KGTLIRVWDTLKKVQ 63 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~---~i~~v~fs~dg~~l~s~~~---------d~~~i~i~d~~~~~~ 63 (78)
+. +||+..+. ....+..|.. .+.+++|||||++|+.++. ++. |++||+.+++.
T Consensus 38 i~-~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~-i~~~d~~~g~~ 102 (719)
T 1z68_A 38 IV-LYNIETGQ-----SYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTAT-YYIYDLSNGEF 102 (719)
T ss_dssp EE-EEESSSCC-----EEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEE-EEEEETTTTEE
T ss_pred EE-EEEcCCCc-----EEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceE-EEEEECCCCcc
Confidence 44 77876654 5555555543 3889999999999998876 688 99999998876
No 153
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=97.89 E-value=0.0001 Score=44.85 Aligned_cols=59 Identities=10% Similarity=-0.068 Sum_probs=43.7
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCc-cCEEEEEECCCCCEEE-EEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQ-SELACLALNQTGTMIA-TASSKGTLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~-~~i~~v~fs~dg~~l~-s~~~d~~~i~i~d~~~~~~~~~~~~ 69 (78)
+. +||+.+.. ....+..+. ..+..++|+|||+.++ +...++. |.+||+.+++.+..+..
T Consensus 23 v~-~~d~~~~~-----~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~-i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 23 LH-VVDVASDT-----VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD-IYGIDLDTCKNTFHANL 83 (349)
T ss_dssp EE-EEETTTTE-----EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTE-EEEEETTTTEEEEEEES
T ss_pred EE-EEECCCCc-----EEEEEecCCCCCCceeEECCCCCEEEEEeCCCCc-EEEEeCCCCcEEEEEEc
Confidence 45 78877654 666666443 2567899999998665 5567888 99999999988877764
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=97.88 E-value=4.7e-05 Score=47.21 Aligned_cols=50 Identities=8% Similarity=0.145 Sum_probs=33.6
Q ss_pred CccCEEEEEECCCCCEEEEEcCC--CCEEEEeeCC--CCc--EEEEeeCCCCCeEEe
Q psy1940 27 HQSELACLALNQTGTMIATASSK--GTLIRVWDTL--KKV--QLVELRRGSDPATLY 77 (78)
Q Consensus 27 h~~~i~~v~fs~dg~~l~s~~~d--~~~i~i~d~~--~~~--~~~~~~~~~~~~~~~ 77 (78)
+......++|+|||++|+++..+ +. |.+|++. ++. .+..+..+..+..+.
T Consensus 257 ~~~~~~~i~~spdg~~l~v~~~~~~~~-i~v~~~~~~~g~~~~~~~~~~g~~~~~~~ 312 (361)
T 3scy_A 257 NAQGSGDIHLSPDGKYLYASNRLKADG-VAIFKVDETNGTLTKVGYQLTGIHPRNFI 312 (361)
T ss_dssp CCCCEEEEEECTTSSEEEEEECSSSCE-EEEEEECTTTCCEEEEEEEECSSCCCEEE
T ss_pred CCCCcccEEECCCCCEEEEECCCCCCE-EEEEEEcCCCCcEEEeeEecCCCCCceEE
Confidence 34556899999999999776655 77 9999985 444 444454433444443
No 155
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=97.86 E-value=1.7e-05 Score=53.43 Aligned_cols=30 Identities=7% Similarity=0.145 Sum_probs=26.9
Q ss_pred CEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC
Q psy1940 30 ELACLALNQTGTMIATASSKGTLIRVWDTLKK 61 (78)
Q Consensus 30 ~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~ 61 (78)
.+.+++|||||++|++++. +. |.+||+.++
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~-i~~~d~~~~ 139 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GE-LYLYDLKQE 139 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TE-EEEEESSSC
T ss_pred CcceeEECCCCCEEEEEeC-Cc-EEEEECCCC
Confidence 3788999999999999886 77 999999887
No 156
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=97.85 E-value=4.8e-05 Score=48.05 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=43.3
Q ss_pred EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEc----------CCCCEEEEeeCCCCcEEEEee
Q psy1940 7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATAS----------SKGTLIRVWDTLKKVQLVELR 68 (78)
Q Consensus 7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~----------~d~~~i~i~d~~~~~~~~~~~ 68 (78)
+||..+.. ...++..+..+ .++|+|||++++++. .++. |.+||+.+++.+.+++
T Consensus 35 v~D~~t~~-----~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~-v~v~d~~t~~~~~~i~ 98 (361)
T 2oiz_A 35 VYDYTNGK-----FLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDV-VEVWDADKLTFEKEIS 98 (361)
T ss_dssp EEETTTCC-----EEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEE-EEEEETTTCCEEEEEE
T ss_pred EEECCCCe-----EEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCE-EEEEECcCCcEEEEEE
Confidence 67765554 66778777666 899999999999986 3677 9999999998888776
No 157
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=97.80 E-value=6.2e-05 Score=50.51 Aligned_cols=58 Identities=9% Similarity=0.056 Sum_probs=42.0
Q ss_pred eeeEEEcccCCcCCCCCcEEecCC------ccCEEEEEECCCCCEEEEEcC----CCCEEEEeeCCCCcEEEEee
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAH------QSELACLALNQTGTMIATASS----KGTLIRVWDTLKKVQLVELR 68 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h------~~~i~~v~fs~dg~~l~s~~~----d~~~i~i~d~~~~~~~~~~~ 68 (78)
+. +||+.... ....+..+ ...+.+++|||||+.|++.+. +.. |.+||+.+++....+.
T Consensus 230 l~-~~d~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~-i~~~d~~~g~~~~~~~ 297 (723)
T 1xfd_A 230 LH-VIGLNGPT-----HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSI-LTLCDATTGVCTKKHE 297 (723)
T ss_dssp EE-EEESSSSC-----CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEE-EEEEETTTCCEEEEEE
T ss_pred EE-EEECCCCc-----eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEE-EEEEeCCCCcceEEEE
Confidence 55 78876654 44555544 667899999999998877643 246 9999999988766554
No 158
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=97.79 E-value=5.2e-05 Score=47.14 Aligned_cols=49 Identities=6% Similarity=-0.105 Sum_probs=37.1
Q ss_pred CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940 20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~ 69 (78)
..+...++...+...+|+|||+.|+.++.++. +.+||+.+++.......
T Consensus 72 ~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~-l~~~d~~~g~~~~~~~~ 120 (388)
T 3pe7_A 72 ATQLTEGRGDNTFGGFLSPDDDALFYVKDGRN-LMRVDLATLEENVVYQV 120 (388)
T ss_dssp EEECCCSSCBCSSSCEECTTSSEEEEEETTTE-EEEEETTTCCEEEEEEC
T ss_pred eEEeeeCCCCCccceEEcCCCCEEEEEeCCCe-EEEEECCCCcceeeeec
Confidence 33334455555556789999999999999998 99999999876655443
No 159
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.74 E-value=0.00026 Score=45.13 Aligned_cols=62 Identities=16% Similarity=0.197 Sum_probs=45.6
Q ss_pred EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCC-EEEEEc-CCCCEEEEeeCCCCcEEEE-eeCCCCCeE
Q psy1940 7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGT-MIATAS-SKGTLIRVWDTLKKVQLVE-LRRGSDPAT 75 (78)
Q Consensus 7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~-~l~s~~-~d~~~i~i~d~~~~~~~~~-~~~~~~~~~ 75 (78)
++|+.+.. .+.++.... ....++|+|||+ .++++. .++. |.++|+.+++.+.. ..-+..|..
T Consensus 302 VID~~t~~-----vv~~i~~g~-~p~~i~~s~Dg~~~l~v~~~~~~~-V~ViD~~t~~vv~~i~~vG~~P~~ 366 (373)
T 2mad_H 302 SVTGLVGQ-----TSSQISLGH-DVDAISVAQDGGPDLYALSAGTEV-LHIYDAGAGDQDQSTVELGSGPQV 366 (373)
T ss_pred EEECCCCE-----EEEEEECCC-CcCeEEECCCCCeEEEEEcCCCCe-EEEEECCCCCEEeeecCCCCCCcE
Confidence 45665543 666665332 468999999999 788877 4888 99999999999988 455555544
No 160
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=97.73 E-value=2.4e-05 Score=52.49 Aligned_cols=57 Identities=14% Similarity=0.092 Sum_probs=42.0
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCC-----CcEEEEeeC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLK-----KVQLVELRR 69 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~-----~~~~~~~~~ 69 (78)
+. +||+.+. ....+..+...+.+++|||||+.|+++ .++. |.+||+.+ +........
T Consensus 103 i~-~~d~~~~------~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~-i~v~~~~~~~~~~g~~~~~~~~ 164 (706)
T 2z3z_A 103 LV-GFDMLAR------KVTYLFDTNEETASLDFSPVGDRVAYV-RNHN-LYIARGGKLGEGMSRAIAVTID 164 (706)
T ss_dssp EE-EEETTTT------EEEEEECCTTCCTTCEECTTSSEEEEE-ETTE-EEEEECBCTTSCCCCCEESCSC
T ss_pred EE-EEECCCC------ceEEccCCcccccCCcCCCCCCEEEEE-ECCe-EEEEecCcccccCCCcEEeccC
Confidence 44 7887654 334455567778899999999999985 6788 99999988 766554443
No 161
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=97.71 E-value=8.8e-05 Score=48.09 Aligned_cols=49 Identities=8% Similarity=0.140 Sum_probs=37.4
Q ss_pred EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcE--EEEe
Q psy1940 7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQ--LVEL 67 (78)
Q Consensus 7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~--~~~~ 67 (78)
+||+.+.. .. .+...|.|++|||+| ++.+..||. +++|+...+.. ..++
T Consensus 150 v~dl~~~~-----~~----~~~~~Vs~v~WSpkG--~~vg~~dg~-i~~~~~~~~~~~~k~~I 200 (388)
T 1xip_A 150 ALDLRTKS-----TK----QLAQNVTSFDVTNSQ--LAVLLKDRS-FQSFAWRNGEMEKQFEF 200 (388)
T ss_dssp EEETTTCC-----EE----EEEESEEEEEECSSE--EEEEETTSC-EEEEEEETTEEEEEEEE
T ss_pred EEEccCCc-----cc----cccCCceEEEEcCCc--eEEEEcCCc-EEEEcCCCcccccccee
Confidence 77877554 22 145689999999999 678899999 99998887775 4556
No 162
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=97.68 E-value=3e-05 Score=51.19 Aligned_cols=38 Identities=11% Similarity=-0.004 Sum_probs=31.9
Q ss_pred CccCEEEEEECCCCCEEEEEcC-CCCEEEEeeCCCCcEEE
Q psy1940 27 HQSELACLALNQTGTMIATASS-KGTLIRVWDTLKKVQLV 65 (78)
Q Consensus 27 h~~~i~~v~fs~dg~~l~s~~~-d~~~i~i~d~~~~~~~~ 65 (78)
+..+|++++|+|||+.||+++. |++ ++||++.++....
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~-~~lw~~~~g~~~~ 58 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGS-VNAYLYDGGETVK 58 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTE-EEEEEEETTEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCc-eeEEEEcCCCcEe
Confidence 3568999999999999999887 998 9999986665543
No 163
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=97.68 E-value=0.00013 Score=45.26 Aligned_cols=71 Identities=10% Similarity=0.118 Sum_probs=42.7
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEc-CCCCEEEEe--eCCCCcEEEEee--CCCCCeEEeC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATAS-SKGTLIRVW--DTLKKVQLVELR--RGSDPATLYW 78 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~-~d~~~i~i~--d~~~~~~~~~~~--~~~~~~~~~w 78 (78)
+. +|++.... +..+....+.. ...+..++|+|||++|+++. .++. |.+| |..+|+...... ....|..+.|
T Consensus 284 i~-v~~~~~~~-g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~-v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~ 359 (361)
T 3scy_A 284 VA-IFKVDETN-GTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNV-IQIFERDQATGLLTDIKKDIKVDKPVCLKF 359 (361)
T ss_dssp EE-EEEECTTT-CCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTE-EEEEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred EE-EEEEcCCC-CcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCC-EEEEEEECCCCcEeecceeeeCCCCeEEEE
Confidence 44 77775221 11113334444 45678999999999888887 5677 9995 566776644332 2235565654
No 164
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=97.67 E-value=7.8e-05 Score=50.04 Aligned_cols=36 Identities=8% Similarity=-0.002 Sum_probs=29.0
Q ss_pred EEEEEECCCCCEEEEEc---------------------------------CCCCEEEEeeCCCCcEEEEe
Q psy1940 31 LACLALNQTGTMIATAS---------------------------------SKGTLIRVWDTLKKVQLVEL 67 (78)
Q Consensus 31 i~~v~fs~dg~~l~s~~---------------------------------~d~~~i~i~d~~~~~~~~~~ 67 (78)
+.+++|||||++|++++ .+.. |.+||+.++......
T Consensus 183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~-l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT-VGIYHLATGKTVYLQ 251 (706)
T ss_dssp CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE-EEEEETTTTEEEECC
T ss_pred CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE-EEEEECCCCceEeec
Confidence 47899999999999987 4466 999999988764433
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=97.62 E-value=0.00072 Score=42.27 Aligned_cols=36 Identities=11% Similarity=0.146 Sum_probs=29.4
Q ss_pred CccCEEEEEECCCCCEEEEEcC-CCCEEEEeeCC-CCcE
Q psy1940 27 HQSELACLALNQTGTMIATASS-KGTLIRVWDTL-KKVQ 63 (78)
Q Consensus 27 h~~~i~~v~fs~dg~~l~s~~~-d~~~i~i~d~~-~~~~ 63 (78)
+...+.+++|+|||++|+++.. ++. |.+||+. +++.
T Consensus 143 ~~~~~~~~~~spdG~~l~~~~~~~~~-v~~~~~~~~g~~ 180 (365)
T 1jof_A 143 ENTGIHGMVFDPTETYLYSADLTANK-LWTHRKLASGEV 180 (365)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTSCE
T ss_pred CCCcceEEEECCCCCEEEEEcCCCCE-EEEEEECCCCCE
Confidence 5567899999999998887754 567 9999998 6754
No 166
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.61 E-value=0.0002 Score=45.98 Aligned_cols=63 Identities=14% Similarity=0.185 Sum_probs=48.1
Q ss_pred EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCC-EEEEEc-CCCCEEEEeeCCCCcEEEEeeCCCCCeEE
Q psy1940 7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGT-MIATAS-SKGTLIRVWDTLKKVQLVELRRGSDPATL 76 (78)
Q Consensus 7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~-~l~s~~-~d~~~i~i~d~~~~~~~~~~~~~~~~~~~ 76 (78)
++|+.+.. .+.++.... ....++|+|||+ .+++.. .++. |.++|+.+++.+..++-+..|-.+
T Consensus 298 ViD~~t~~-----vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~-VsVID~~t~kvv~~I~vg~~P~~i 362 (368)
T 1mda_H 298 SVTASVGQ-----TSGPISNGH-DSDAIIAAQDGASDNYANSAGTEV-LDIYDAASDQDQSSVELDKGPESL 362 (368)
T ss_dssp EEESSSCC-----EEECCEEEE-EECEEEECCSSSCEEEEEETTTTE-EEEEESSSCEEEEECCCCSCCCEE
T ss_pred EEECCCCe-----EEEEEECCC-CcceEEECCCCCEEEEEccCCCCe-EEEEECCCCcEEEEEECCCCCCEE
Confidence 66766654 566665443 468899999998 566666 5898 999999999999999977777554
No 167
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=97.61 E-value=0.0001 Score=45.40 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=35.9
Q ss_pred EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEc-CCCCEEEEeeCC
Q psy1940 7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATAS-SKGTLIRVWDTL 59 (78)
Q Consensus 7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~-~d~~~i~i~d~~ 59 (78)
+||+.... .+.+..+..+...+..++|+|||++|++++ .++. +.+||+.
T Consensus 67 ~~~~~~g~---~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~-v~v~~~~ 116 (347)
T 3hfq_A 67 AWQIDGQT---AHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGT-AEVMKIA 116 (347)
T ss_dssp EEEEETTE---EEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTE-EEEEEEC
T ss_pred EEEecCCc---EEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCE-EEEEEeC
Confidence 77874332 113444445677788999999999888887 6788 9999986
No 168
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.51 E-value=0.0006 Score=44.23 Aligned_cols=64 Identities=11% Similarity=0.153 Sum_probs=47.9
Q ss_pred EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCC-EEEEE-cCCCCEEEEeeCCCCcEEEEeeCCCCCeEEe
Q psy1940 7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGT-MIATA-SSKGTLIRVWDTLKKVQLVELRRGSDPATLY 77 (78)
Q Consensus 7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~-~l~s~-~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~ 77 (78)
++|+.+.. .++.+... .++++++|++||+ .|++. ..++. |.++|..+++.+..++....|..|.
T Consensus 315 viD~~t~k-----v~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~-VsViD~~t~k~~~~i~~~~~p~~l~ 380 (386)
T 3sjl_D 315 VLDAKTGE-----RLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKT-LYIHDAESGEELRSVNQLGHGPQVI 380 (386)
T ss_dssp EEETTTCC-----EEEEEEEE-EEECEEEECSSSSCEEEEEETTTTE-EEEEETTTCCEEEEECCCCSSCCEE
T ss_pred EEECCCCe-----EEEEEECC-CCcceEEECCCCCeEEEEEcCCCCe-EEEEECCCCcEEEEecCCCCCceeE
Confidence 45665554 66666532 3678999999997 66664 56888 9999999999999998777766543
No 169
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=97.41 E-value=0.00024 Score=47.86 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=30.0
Q ss_pred cCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEE
Q psy1940 29 SELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVE 66 (78)
Q Consensus 29 ~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~ 66 (78)
..+..++|||||+.|+.+. ++. |++||+.++.....
T Consensus 110 ~~~~~~~~SPDG~~la~~~-~~~-i~~~~~~~g~~~~l 145 (719)
T 1z68_A 110 RPIQYLCWSPVGSKLAYVY-QNN-IYLKQRPGDPPFQI 145 (719)
T ss_dssp SSBCCEEECSSTTCEEEEE-TTE-EEEESSTTSCCEEC
T ss_pred cccccceECCCCCEEEEEE-CCe-EEEEeCCCCCcEEE
Confidence 4578899999999999986 677 99999988876543
No 170
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.39 E-value=0.0004 Score=44.61 Aligned_cols=55 Identities=11% Similarity=0.061 Sum_probs=44.4
Q ss_pred EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEc----------CCCCEEEEeeCCCCcEEEEeeC
Q psy1940 7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATAS----------SKGTLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~----------~d~~~i~i~d~~~~~~~~~~~~ 69 (78)
++|..+.. .+.++.....+ .++|+|||++++.+. .++. |.++|+.+++.+.+++-
T Consensus 50 vID~~t~~-----v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~-VsviD~~T~~vv~~I~v 114 (368)
T 1mda_H 50 VSCAGCGV-----TLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDY-VEVFDPVTFLPIADIEL 114 (368)
T ss_dssp EEETTTTE-----EEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEE-EEEECTTTCCEEEEEEE
T ss_pred EEECCCCe-----EEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCE-EEEEECCCCCEEEEEEC
Confidence 66766655 77888755556 699999999999885 3677 99999999999988864
No 171
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.38 E-value=0.0012 Score=40.97 Aligned_cols=58 Identities=7% Similarity=-0.081 Sum_probs=42.8
Q ss_pred EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCC
Q psy1940 7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGS 71 (78)
Q Consensus 7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~ 71 (78)
++|..+.. ...++.. ......++++++|+..++...++. |.++|..+++....++.+.
T Consensus 68 viD~~t~~-----~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~-v~~iD~~t~~~~~~i~~g~ 125 (328)
T 3dsm_A 68 AIDINTFK-----EVGRITG-FTSPRYIHFLSDEKAYVTQIWDYR-IFIINPKTYEITGYIECPD 125 (328)
T ss_dssp EEETTTCC-----EEEEEEC-CSSEEEEEEEETTEEEEEEBSCSE-EEEEETTTTEEEEEEECTT
T ss_pred EEECcccE-----EEEEcCC-CCCCcEEEEeCCCeEEEEECCCCe-EEEEECCCCeEEEEEEcCC
Confidence 67776554 6666653 456788999999955555447888 9999999999888777555
No 172
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.37 E-value=0.0017 Score=41.42 Aligned_cols=58 Identities=16% Similarity=0.117 Sum_probs=43.4
Q ss_pred eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEc----------CCCCEEEEeeCCCCcEEEEeeC
Q psy1940 3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATAS----------SKGTLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~----------~d~~~i~i~d~~~~~~~~~~~~ 69 (78)
.+. ++|..+.. ...+++....+ .++|||||++++.+. .++. |.++|..+.+.+..++-
T Consensus 48 ~v~-v~D~~t~~-----~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~-v~viD~~t~~~~~~i~~ 115 (373)
T 2mad_H 48 QQW-VLDAGSGS-----ILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDY-VEVFDPVTFLPIADIEL 115 (373)
T ss_pred EEE-EEECCCCe-----EEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCe-EEEEECCCCcEEEEEEC
Confidence 345 77776554 66677655555 899999999999885 3677 99999998888777653
No 173
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=97.35 E-value=0.00037 Score=47.52 Aligned_cols=51 Identities=14% Similarity=0.036 Sum_probs=39.5
Q ss_pred EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEE
Q psy1940 7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLV 65 (78)
Q Consensus 7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~ 65 (78)
+||+.+.. ...+..|.+.+...+|||||+.||.++ ++. |.+||+.++...+
T Consensus 96 ~~d~~~~~------~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~-i~~~~~~~~~~~~ 146 (740)
T 4a5s_A 96 IYDLNKRQ------LITEERIPNNTQWVTWSPVGHKLAYVW-NND-IYVKIEPNLPSYR 146 (740)
T ss_dssp EEETTTTE------ECCSSCCCTTEEEEEECSSTTCEEEEE-TTE-EEEESSTTSCCEE
T ss_pred EEECCCCc------EEEcccCCCcceeeEECCCCCEEEEEE-CCe-EEEEECCCCceEE
Confidence 67776653 233566778899999999999999885 677 9999998876543
No 174
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=97.34 E-value=0.00028 Score=43.82 Aligned_cols=52 Identities=8% Similarity=0.072 Sum_probs=38.0
Q ss_pred CCcEEecCCccCEEE-----EEECCCCCEEEEEcC-CC--CEEEEeeCCCCcEEEEeeCCC
Q psy1940 19 SSPVTINAHQSELAC-----LALNQTGTMIATASS-KG--TLIRVWDTLKKVQLVELRRGS 71 (78)
Q Consensus 19 ~~~~~~~~h~~~i~~-----v~fs~dg~~l~s~~~-d~--~~i~i~d~~~~~~~~~~~~~~ 71 (78)
.....+..|...... .+|||||++|+.++. ++ . |.+||+.+++......++.
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~-l~~~d~~~g~~~~lt~~~~ 80 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWN-YYLLDLNTQVATQLTEGRG 80 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCE-EEEEETTTCEEEECCCSSC
T ss_pred cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCce-EEEEeCCCCceEEeeeCCC
Confidence 366777777666655 789999999998887 66 4 6677988887766555443
No 175
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.32 E-value=0.0017 Score=42.60 Aligned_cols=63 Identities=16% Similarity=0.286 Sum_probs=47.2
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCC-EEEEEc-CCCCEEEEeeCCCCcEEEEe-eCCCCCe
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGT-MIATAS-SKGTLIRVWDTLKKVQLVEL-RRGSDPA 74 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~-~l~s~~-~d~~~i~i~d~~~~~~~~~~-~~~~~~~ 74 (78)
+. ++|+.+.. .+.++.... ....++|+|||+ ++++.. .++. |.++|+.+++.+..+ .-+..|.
T Consensus 352 Vs-VID~~T~k-----vv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~-VsVID~~t~kvv~tI~~vG~~P~ 417 (426)
T 3c75_H 352 VV-VLNAETGE-----RINKIELGH-EIDSINVSQDAEPLLYALSAGTQT-LHIYDAATGEELRSVDQLGRGPQ 417 (426)
T ss_dssp EE-EEETTTCC-----EEEEEEEEE-EECEEEECCSSSCEEEEEETTTTE-EEEEETTTCCEEEEECCCSSSCC
T ss_pred EE-EEECCCCe-----EEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCe-EEEEECCCCCEEEEecCCCCCCc
Confidence 45 66766664 667775332 467899999999 888887 5888 999999999999987 4444443
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=97.27 E-value=0.0011 Score=40.59 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=28.2
Q ss_pred EEEEEECCCCCEEEEEcCC---------------------------CCEEEEeeCCCCcEEEEe
Q psy1940 31 LACLALNQTGTMIATASSK---------------------------GTLIRVWDTLKKVQLVEL 67 (78)
Q Consensus 31 i~~v~fs~dg~~l~s~~~d---------------------------~~~i~i~d~~~~~~~~~~ 67 (78)
+..++|+|||+.|+.++.+ .. |.+||+.+++.+..+
T Consensus 106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-l~~~d~~~~~~~~~l 168 (347)
T 2gop_A 106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTT-FWIFDTESEEVIEEF 168 (347)
T ss_dssp EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEE-EEEEETTTTEEEEEE
T ss_pred ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccce-EEEEECCCCeEEeee
Confidence 8999999999999887632 45 888999888763333
No 177
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=97.25 E-value=0.00037 Score=47.25 Aligned_cols=39 Identities=21% Similarity=0.195 Sum_probs=30.7
Q ss_pred CccCEEEEEECCCCCEEEEEcCCC-----CEEEEeeCCCCcEEEE
Q psy1940 27 HQSELACLALNQTGTMIATASSKG-----TLIRVWDTLKKVQLVE 66 (78)
Q Consensus 27 h~~~i~~v~fs~dg~~l~s~~~d~-----~~i~i~d~~~~~~~~~ 66 (78)
|...+..++|||||++|+.++.++ . |++||+.+++.+..
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~-i~v~d~~tg~~~~~ 166 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVT-IKFMKVDGAKELPD 166 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEE-EEEEETTTTEEEEE
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEE-EEEEECCCCCCCcc
Confidence 334678899999999998765543 6 99999999987653
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=97.24 E-value=0.001 Score=44.34 Aligned_cols=43 Identities=12% Similarity=0.136 Sum_probs=31.0
Q ss_pred ecCCccCEEEEEECCCCCEEEEEcCCCC-EEEEeeCCCCcEEEE
Q psy1940 24 INAHQSELACLALNQTGTMIATASSKGT-LIRVWDTLKKVQLVE 66 (78)
Q Consensus 24 ~~~h~~~i~~v~fs~dg~~l~s~~~d~~-~i~i~d~~~~~~~~~ 66 (78)
..+|...+..++|+|||+.+++++.++. .|.+||+.++.....
T Consensus 237 ~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l 280 (662)
T 3azo_A 237 LGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQL 280 (662)
T ss_dssp EEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEES
T ss_pred CCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeec
Confidence 3456788999999999998888888884 055566656655433
No 179
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.21 E-value=0.00086 Score=43.51 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=41.8
Q ss_pred EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEc----------CCCCEEEEeeCCCCcEEEEee
Q psy1940 7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATAS----------SKGTLIRVWDTLKKVQLVELR 68 (78)
Q Consensus 7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~----------~d~~~i~i~d~~~~~~~~~~~ 68 (78)
++|..+.. .+.++.....+ . +++||||++++.+. .++. |.+||..+++.+.+++
T Consensus 63 ViD~~t~~-----v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~-VsviD~~t~~v~~~I~ 126 (386)
T 3sjl_D 63 VIDGEAGR-----VIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDY-VEVFDPVTLLPTADIE 126 (386)
T ss_dssp EEETTTTE-----EEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEE-EEEECTTTCCEEEEEE
T ss_pred EEECCCCe-----EEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCE-EEEEECCCCeEEEEEE
Confidence 56666554 67777755555 5 99999999988775 3567 9999999999888875
No 180
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=97.15 E-value=0.0023 Score=39.06 Aligned_cols=57 Identities=11% Similarity=0.074 Sum_probs=44.7
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCc-cCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQ-SELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG 70 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~-~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~ 70 (78)
++ +||..+++ .+-.+..+. ..++++.++|+|+.++ +.++. |..||. +|+.+.++..+
T Consensus 17 v~-~~d~~tG~-----~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~-V~~~d~-~G~~~W~~~~~ 74 (276)
T 3no2_A 17 IA-IINKDTKE-----IVWEYPLEKGWECNSVAATKAGEILF--SYSKG-AKMITR-DGRELWNIAAP 74 (276)
T ss_dssp EE-EEETTTTE-----EEEEEECCTTCCCCEEEECTTSCEEE--ECBSE-EEEECT-TSCEEEEEECC
T ss_pred EE-EEECCCCe-----EEEEeCCCccCCCcCeEECCCCCEEE--eCCCC-EEEECC-CCCEEEEEcCC
Confidence 46 78876665 777777765 4789999999999888 34677 999998 89888888754
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=97.13 E-value=0.0019 Score=39.48 Aligned_cols=39 Identities=18% Similarity=0.066 Sum_probs=28.4
Q ss_pred cCEEEEEECCCCCEEEEEcCC---C--CEEEEeeCCCCcEEEEee
Q psy1940 29 SELACLALNQTGTMIATASSK---G--TLIRVWDTLKKVQLVELR 68 (78)
Q Consensus 29 ~~i~~v~fs~dg~~l~s~~~d---~--~~i~i~d~~~~~~~~~~~ 68 (78)
..+..++|||||+.|+..+.+ + . |.++|+.+++......
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~-l~~~~~~~g~~~~l~~ 102 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSE-IWVADLETLSSKKILE 102 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEE-EEEEETTTTEEEEEEE
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcce-EEEEECCCCceEEEEc
Confidence 457789999999999987653 2 4 6677888776654444
No 182
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=97.12 E-value=0.00036 Score=46.51 Aligned_cols=40 Identities=8% Similarity=-0.103 Sum_probs=32.5
Q ss_pred CcEEecC-----CccCEEEEEECCCCCEEEEEcCC----------CCEEEEeeCCC
Q psy1940 20 SPVTINA-----HQSELACLALNQTGTMIATASSK----------GTLIRVWDTLK 60 (78)
Q Consensus 20 ~~~~~~~-----h~~~i~~v~fs~dg~~l~s~~~d----------~~~i~i~d~~~ 60 (78)
....+.. |...+.+++|||||+.|+.++.+ .. |.+||+.+
T Consensus 116 ~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~-i~~~~~~~ 170 (662)
T 3azo_A 116 VPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRF-LAAVPLDG 170 (662)
T ss_dssp CCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEE-EEEEETTS
T ss_pred CCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeE-EEEEECCC
Confidence 4455555 66778899999999999998877 46 99999987
No 183
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.12 E-value=0.00099 Score=41.21 Aligned_cols=35 Identities=6% Similarity=-0.163 Sum_probs=29.6
Q ss_pred EEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940 33 CLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68 (78)
Q Consensus 33 ~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~ 68 (78)
.+.|+|||+.|+.++.++. +.+||+.+++......
T Consensus 85 ~~~~spdg~~l~~~~~~~~-l~~~d~~~~~~~~~~~ 119 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELN-LMKVDLETLEEQVIYT 119 (396)
T ss_dssp TCEECTTSSEEEEEETTTE-EEEEETTTCCEEEEEE
T ss_pred cceECCCCCEEEEEEcCCc-EEEEECCCCCcEEEEe
Confidence 4789999999999999998 9999999887655544
No 184
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=97.11 E-value=0.00019 Score=48.59 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=30.3
Q ss_pred CCccCEEEEEECCCCCEEE-----EEcCCCCEEEEeeCCCCcEE
Q psy1940 26 AHQSELACLALNQTGTMIA-----TASSKGTLIRVWDTLKKVQL 64 (78)
Q Consensus 26 ~h~~~i~~v~fs~dg~~l~-----s~~~d~~~i~i~d~~~~~~~ 64 (78)
+|...+.+++|||||++|+ .++++.. |++||+.+++.+
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~-i~v~dl~tg~~~ 160 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAV-LHVIDVDSGEWS 160 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCE-EEEEETTTCCBC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEE-EEEEECCCCCCc
Confidence 3555688999999999998 4455567 999999998764
No 185
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=97.08 E-value=0.004 Score=37.93 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=37.1
Q ss_pred CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEe
Q psy1940 20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVEL 67 (78)
Q Consensus 20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~ 67 (78)
....+..+...+.+++|+|+|+.++++..++. |.+||..+++.....
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~-i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGN-IFKINPETKEIKRPF 82 (333)
T ss_dssp EEEEEESSCCCEEEEEECTTSCEEEEETTTCE-EEEECTTTCCEEEEE
T ss_pred eeEEEeccCccccCcEECCCCCEEEEECCCCE-EEEEeCCCCcEEEEe
Confidence 34455666667789999999998888888998 999999888765443
No 186
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=97.08 E-value=0.0025 Score=41.31 Aligned_cols=53 Identities=17% Similarity=0.094 Sum_probs=40.7
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLV 65 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~ 65 (78)
++ +||+.+.. .......|+.++.++.+.+. .+++++.||. +.+||+.++....
T Consensus 108 l~-v~dv~sl~-----~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~-L~v~dl~~~~~~~ 160 (388)
T 1xip_A 108 LY-SLDLEELS-----EFRTVTSFEKPVFQLKNVNN--TLVILNSVND-LSALDLRTKSTKQ 160 (388)
T ss_dssp EE-EEESSSTT-----CEEEEEECSSCEEEEEECSS--EEEEEETTSE-EEEEETTTCCEEE
T ss_pred EE-EEEchhhh-----ccCccceeecceeeEEecCC--CEEEEECCCC-EEEEEccCCcccc
Confidence 46 88988775 44455677778888888754 3888999999 9999999877643
No 187
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=97.06 E-value=0.00025 Score=48.39 Aligned_cols=54 Identities=11% Similarity=0.177 Sum_probs=39.7
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccC-----EEEEEECCCCCEEEEEcCC---------CCEEEEeeCCCCcEE
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSE-----LACLALNQTGTMIATASSK---------GTLIRVWDTLKKVQL 64 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~-----i~~v~fs~dg~~l~s~~~d---------~~~i~i~d~~~~~~~ 64 (78)
+. +||+.++. +...+.+|... ...++|||||++|+.++.+ +. +.+||+.+++..
T Consensus 38 i~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~-~~~~d~~~~~~~ 105 (740)
T 4a5s_A 38 IL-VFNAEYGN-----SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS-YDIYDLNKRQLI 105 (740)
T ss_dssp EE-EEETTTCC-----EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE-EEEEETTTTEEC
T ss_pred EE-EEECCCCc-----eEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE-EEEEECCCCcEE
Confidence 45 78887765 56667776543 2347899999999998876 44 669999988754
No 188
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.05 E-value=0.0014 Score=42.96 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=44.0
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEc----------CCCCEEEEeeCCCCcEEEEee
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATAS----------SKGTLIRVWDTLKKVQLVELR 68 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~----------~d~~~i~i~d~~~~~~~~~~~ 68 (78)
+. ++|..+.. .+.++.....+ .++++|||++|+.+. .++. |.++|..+++.+..++
T Consensus 101 Vs-VID~~t~~-----vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~-VsviD~~t~~vv~~I~ 166 (426)
T 3c75_H 101 QF-VIDGSTGR-----ILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDY-VEVFDPVTFLPIADIE 166 (426)
T ss_dssp EE-EEETTTTE-----EEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEE-EEEECTTTCCEEEEEE
T ss_pred EE-EEECCCCE-----EEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCE-EEEEECCCCcEEEEEE
Confidence 44 66776665 77778755556 799999999888875 3667 9999999999888775
No 189
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=96.91 E-value=0.004 Score=38.42 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=36.8
Q ss_pred EEEcccCCcCCCCCcEEe---cCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCC
Q psy1940 7 SQDLSSTELSSSSSPVTI---NAHQSELACLALNQTGTMIATASSKGTLIRVWDTL 59 (78)
Q Consensus 7 i~d~~~~~~~~~~~~~~~---~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~ 59 (78)
+||..+.. ...++ .++...+..|+++|+|+.+++...++. |++|++.
T Consensus 272 ~~~~~~g~-----~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~-I~~~~~~ 321 (329)
T 3fvz_A 272 VMNFSSGE-----IIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNT-VWKFTLT 321 (329)
T ss_dssp EEETTTCC-----EEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCC-EEEEEEE
T ss_pred EEEcCCCe-----EEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCE-EEEEeCC
Confidence 56655543 66666 366777899999999988888888999 9999865
No 190
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=96.89 E-value=0.0044 Score=37.69 Aligned_cols=50 Identities=8% Similarity=0.151 Sum_probs=38.6
Q ss_pred CccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCC-CCeEEe
Q psy1940 27 HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGS-DPATLY 77 (78)
Q Consensus 27 h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~-~~~~~~ 77 (78)
+.+....++++++|+..++...++. |.+||..+|+.+..++.+. .+..++
T Consensus 197 ~~~~p~g~~~d~~G~lwva~~~~~~-v~~~d~~tG~~~~~i~~p~~~~t~~~ 247 (297)
T 3g4e_A 197 EEQIPDGMCIDAEGKLWVACYNGGR-VIRLDPVTGKRLQTVKLPVDKTTSCC 247 (297)
T ss_dssp GGCEEEEEEEBTTSCEEEEEETTTE-EEEECTTTCCEEEEEECSSSBEEEEE
T ss_pred CCCCCCeeEECCCCCEEEEEcCCCE-EEEEcCCCceEEEEEECCCCCceEEE
Confidence 3456788999999988887777888 9999999899888887653 344443
No 191
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=96.86 E-value=0.017 Score=34.44 Aligned_cols=48 Identities=8% Similarity=0.190 Sum_probs=35.6
Q ss_pred CcEEecCC--ccCEEEEEECCCCCEEEEEcCCC-CEEEEeeCCCCcEEEEeeC
Q psy1940 20 SPVTINAH--QSELACLALNQTGTMIATASSKG-TLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 20 ~~~~~~~h--~~~i~~v~fs~dg~~l~s~~~d~-~~i~i~d~~~~~~~~~~~~ 69 (78)
....+..+ ...+..++++++|+.+++...++ . |.+||. ++..+..+..
T Consensus 196 ~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~-i~~~~~-~g~~~~~~~~ 246 (286)
T 1q7f_A 196 YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN-LTIFTQ-DGQLISALES 246 (286)
T ss_dssp EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE-EEEECT-TSCEEEEEEE
T ss_pred EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEE-EEEECC-CCCEEEEEcc
Confidence 45555433 35788999999999888887775 8 999995 5666666654
No 192
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=96.84 E-value=0.016 Score=34.87 Aligned_cols=43 Identities=7% Similarity=0.070 Sum_probs=33.4
Q ss_pred CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCC-CCcE
Q psy1940 20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTL-KKVQ 63 (78)
Q Consensus 20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~-~~~~ 63 (78)
....+..+....+.++|+|||+.+++.+.++. |.+||+. ++..
T Consensus 163 ~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~-i~~~~~~~~g~~ 206 (296)
T 3e5z_A 163 TLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNA-THRYCLNARGET 206 (296)
T ss_dssp CEEEEECCCSSEEEEEECTTSCEEEEETTTTE-EEEEEECSSSCE
T ss_pred CEEEeecCCCCCccEEECCCCCEEEEeCCCCe-EEEEEECCCCcC
Confidence 34445556667789999999999987888888 9999986 4554
No 193
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=96.81 E-value=0.015 Score=35.43 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=30.9
Q ss_pred CCccCEEEEEECCCCCEEEEEcCC----CCEEEEeeCCCCcEE
Q psy1940 26 AHQSELACLALNQTGTMIATASSK----GTLIRVWDTLKKVQL 64 (78)
Q Consensus 26 ~h~~~i~~v~fs~dg~~l~s~~~d----~~~i~i~d~~~~~~~ 64 (78)
.+...+.+++++|+|+.+++...+ +. |.+||..++...
T Consensus 84 ~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~-i~~~d~~~~~~~ 125 (333)
T 2dg1_A 84 SHKANPAAIKIHKDGRLFVCYLGDFKSTGG-IFAATENGDNLQ 125 (333)
T ss_dssp CSSSSEEEEEECTTSCEEEEECTTSSSCCE-EEEECTTSCSCE
T ss_pred CCCCCcceEEECCCCcEEEEeCCCCCCCce-EEEEeCCCCEEE
Confidence 566789999999999988877766 67 999998877654
No 194
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.75 E-value=0.0011 Score=40.98 Aligned_cols=46 Identities=7% Similarity=-0.018 Sum_probs=31.6
Q ss_pred CcEEecCCccC-----EEEEEECCCCCEEEEEcCC---CCEEEEeeCCCCcEEEE
Q psy1940 20 SPVTINAHQSE-----LACLALNQTGTMIATASSK---GTLIRVWDTLKKVQLVE 66 (78)
Q Consensus 20 ~~~~~~~h~~~-----i~~v~fs~dg~~l~s~~~d---~~~i~i~d~~~~~~~~~ 66 (78)
....+..+... +..++|||||++|+....+ .. +.+||+.+++....
T Consensus 22 ~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~-l~~~d~~~~~~~~l 75 (396)
T 3c5m_A 22 KVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRN-YYLLNLETQQAVQL 75 (396)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCE-EEEEETTTTEEEEC
T ss_pred ceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCce-EEEEECCCCcEEEe
Confidence 55566554333 6778999999998876543 35 77889888765443
No 195
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=96.68 E-value=0.0078 Score=37.25 Aligned_cols=64 Identities=9% Similarity=0.077 Sum_probs=42.6
Q ss_pred EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCC----------CCEEEEeeCCCCcEEEEeeC--CCCCe
Q psy1940 7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSK----------GTLIRVWDTLKKVQLVELRR--GSDPA 74 (78)
Q Consensus 7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d----------~~~i~i~d~~~~~~~~~~~~--~~~~~ 74 (78)
++|..+.. ...++.... ....++++|+|+.++++..+ +. |.++|..+++....+.. +..|.
T Consensus 156 viD~~t~~-----~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~-v~~id~~t~~v~~~~~~~~g~~p~ 228 (328)
T 3dsm_A 156 KIDTETDK-----VVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPS-LYRIDAETFTVEKQFKFKLGDWPS 228 (328)
T ss_dssp EEETTTTE-----EEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCE-EEEEETTTTEEEEEEECCTTCCCE
T ss_pred EEECCCCe-----EEEEEEcCC-CccceEEcCCCCEEEEECCCccCCccccCCce-EEEEECCCCeEEEEEecCCCCCce
Confidence 56665543 555555432 34678999999977776654 67 99999999988766653 33454
Q ss_pred EEe
Q psy1940 75 TLY 77 (78)
Q Consensus 75 ~~~ 77 (78)
.++
T Consensus 229 ~la 231 (328)
T 3dsm_A 229 EVQ 231 (328)
T ss_dssp EEE
T ss_pred eEE
Confidence 443
No 196
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=96.63 E-value=0.025 Score=33.95 Aligned_cols=44 Identities=11% Similarity=-0.053 Sum_probs=35.8
Q ss_pred cEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEE
Q psy1940 21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLV 65 (78)
Q Consensus 21 ~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~ 65 (78)
...+..+...+.+++++|+|+.+++...++. |.+||..+++...
T Consensus 61 ~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~-i~~~d~~~g~~~~ 104 (296)
T 3e5z_A 61 LSPEMHPSHHQNGHCLNKQGHLIACSHGLRR-LERQREPGGEWES 104 (296)
T ss_dssp EEEEESSCSSEEEEEECTTCCEEEEETTTTE-EEEECSTTCCEEE
T ss_pred eEEEECCCCCcceeeECCCCcEEEEecCCCe-EEEEcCCCCcEEE
Confidence 4556667778999999999998888777788 9999998887543
No 197
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=96.62 E-value=0.0094 Score=36.74 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=32.0
Q ss_pred CEEEEEECCC-CCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940 30 ELACLALNQT-GTMIATASSKGTLIRVWDTLKKVQLVELR 68 (78)
Q Consensus 30 ~i~~v~fs~d-g~~l~s~~~d~~~i~i~d~~~~~~~~~~~ 68 (78)
....++++|+ |..+++...++. |++||..+|+.+..+.
T Consensus 197 ~p~gia~d~~~g~l~v~d~~~~~-I~~~~~~~G~~~~~~~ 235 (329)
T 3fvz_A 197 VPHSLALVPHLDQLCVADRENGR-IQCFKTDTKEFVREIK 235 (329)
T ss_dssp CEEEEEEETTTTEEEEEETTTTE-EEEEETTTCCEEEEEC
T ss_pred CCcEEEEECCCCEEEEEECCCCE-EEEEECCCCcEEEEEe
Confidence 3789999998 777777778888 9999998888888774
No 198
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=96.60 E-value=0.0013 Score=44.89 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=29.7
Q ss_pred cCEEEEEECCCCCEEEEEcCC-----CCEEEEeeCCCCcEEEE
Q psy1940 29 SELACLALNQTGTMIATASSK-----GTLIRVWDTLKKVQLVE 66 (78)
Q Consensus 29 ~~i~~v~fs~dg~~l~s~~~d-----~~~i~i~d~~~~~~~~~ 66 (78)
..+..++|||||++|+.++.+ .. |++||+.+|+.+..
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~-i~v~dl~tg~~~~~ 204 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRT-VKFVGVADGKPLAD 204 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEE-EEEEETTTCCEEEE
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEE-EEEEECCCCCCCCc
Confidence 367889999999999887554 45 99999999986543
No 199
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=96.60 E-value=0.008 Score=37.46 Aligned_cols=36 Identities=8% Similarity=0.085 Sum_probs=29.8
Q ss_pred ccCEEEEEECCCCCEEEEEcCCCCEEEEeeCC-CCcEEE
Q psy1940 28 QSELACLALNQTGTMIATASSKGTLIRVWDTL-KKVQLV 65 (78)
Q Consensus 28 ~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~-~~~~~~ 65 (78)
...+..++|+|||++|++++.+ . |.+||+. +++...
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~-v~~~~~~~~g~~~~ 75 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-K-WSSFAVKSPTEIVH 75 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-E-EEEEEEEETTEEEE
T ss_pred CCCCcEEEECCCCCEEEEEccc-e-EEEEEECCCCCEEE
Confidence 3467789999999999999888 7 9999987 776544
No 200
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=96.48 E-value=0.0014 Score=44.63 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=29.0
Q ss_pred CccCEEEEEECCCCCEEEEE-----cCCCCEEEEeeCCCCcEEE
Q psy1940 27 HQSELACLALNQTGTMIATA-----SSKGTLIRVWDTLKKVQLV 65 (78)
Q Consensus 27 h~~~i~~v~fs~dg~~l~s~-----~~d~~~i~i~d~~~~~~~~ 65 (78)
|...+..++|||||++||-+ ++... |+++|+.+|+.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~-i~v~dl~tg~~~~ 169 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWRE-IHLMDVESKQPLE 169 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEE-EEEEETTTCSEEE
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEE-EEEEECCCCCCCc
Confidence 44568889999999988843 33346 9999999998654
No 201
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=96.42 E-value=0.034 Score=33.11 Aligned_cols=48 Identities=8% Similarity=0.114 Sum_probs=35.4
Q ss_pred CcEEec--CCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940 20 SPVTIN--AHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 20 ~~~~~~--~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~ 69 (78)
....+. .+...+..++++|+|+.+++...++. |.+||. ++..+..+..
T Consensus 153 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~-i~~~~~-~g~~~~~~~~ 202 (286)
T 1q7f_A 153 VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC-VKVFNY-EGQYLRQIGG 202 (286)
T ss_dssp EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE-EEEEET-TCCEEEEESC
T ss_pred EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCE-EEEEcC-CCCEEEEEcc
Confidence 444443 34456889999999998888888888 999997 4566666643
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=96.36 E-value=0.012 Score=35.40 Aligned_cols=46 Identities=9% Similarity=0.151 Sum_probs=34.6
Q ss_pred ecCCc-cCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940 24 INAHQ-SELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG 70 (78)
Q Consensus 24 ~~~h~-~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~ 70 (78)
+..+. ..+..++++++|+..++...++. |.+||..+++.+..+..+
T Consensus 220 ~~~~~~~~p~~i~~d~~G~l~v~~~~~~~-i~~~d~~~g~~~~~~~~~ 266 (314)
T 1pjx_A 220 IPGTHEGGADGMDFDEDNNLLVANWGSSH-IEVFGPDGGQPKMRIRCP 266 (314)
T ss_dssp CCCCSSCEEEEEEEBTTCCEEEEEETTTE-EEEECTTCBSCSEEEECS
T ss_pred CCCCCCCCCCceEECCCCCEEEEEcCCCE-EEEEcCCCCcEeEEEeCC
Confidence 33443 55788999999998888777888 999999877766555543
No 203
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=96.14 E-value=0.036 Score=37.37 Aligned_cols=58 Identities=7% Similarity=-0.065 Sum_probs=42.8
Q ss_pred eeeEEEcc--cCCcCCCCCcEEecCCccCEEEEEEC----CCCCEEEEEcCC-CCEEEEeeCCCCcEEEEeeC
Q psy1940 4 LQCSQDLS--STELSSSSSPVTINAHQSELACLALN----QTGTMIATASSK-GTLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 4 ~~~i~d~~--~~~~~~~~~~~~~~~h~~~i~~v~fs----~dg~~l~s~~~d-~~~i~i~d~~~~~~~~~~~~ 69 (78)
+. +||+. +. +....+..... ...++|+ |||++++++.+. +. +.++|..+.+.+..++.
T Consensus 220 V~-viD~~~~t~-----~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~-v~ViD~~t~~~~~~i~~ 284 (567)
T 1qks_A 220 VN-MIDLWMKEP-----TTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQ-YVIMDGETLEPKKIQST 284 (567)
T ss_dssp EE-EEETTSSSC-----CEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTE-EEEEETTTCCEEEEEEC
T ss_pred EE-EEECCCCCC-----cEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCe-EEEEECCCCcEEEEEec
Confidence 45 77875 33 36666765443 4689999 699988887665 66 99999999998887763
No 204
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=95.90 E-value=0.058 Score=32.28 Aligned_cols=40 Identities=10% Similarity=0.124 Sum_probs=30.0
Q ss_pred CcEEecCCccCEEEEEECCCCCEEE-EEcCCCCEEEEeeCCC
Q psy1940 20 SPVTINAHQSELACLALNQTGTMIA-TASSKGTLIRVWDTLK 60 (78)
Q Consensus 20 ~~~~~~~h~~~i~~v~fs~dg~~l~-s~~~d~~~i~i~d~~~ 60 (78)
....+..+...+.+++|+|+|+.|+ +...++. |..+|+..
T Consensus 259 ~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~-l~~~~~~~ 299 (314)
T 1pjx_A 259 PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNA-VWKFEWQR 299 (314)
T ss_dssp CSEEEECSSSCEEEEEECTTSSEEEEEETTTTE-EEEEECSS
T ss_pred EeEEEeCCCCCceeEEECCCCCEEEEEeCCCCe-EEEEeCCC
Confidence 5566666667889999999999555 4455677 88998764
No 205
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=95.79 E-value=0.036 Score=37.57 Aligned_cols=37 Identities=11% Similarity=0.040 Sum_probs=27.4
Q ss_pred CCccCEEEEEECCCCCEEEEEcCCC----CEEEEeeCCCCcE
Q psy1940 26 AHQSELACLALNQTGTMIATASSKG----TLIRVWDTLKKVQ 63 (78)
Q Consensus 26 ~h~~~i~~v~fs~dg~~l~s~~~d~----~~i~i~d~~~~~~ 63 (78)
.|...+.+++|||||++|+..+.++ . +.++|..++..
T Consensus 224 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~-l~~~~~~~~~~ 264 (695)
T 2bkl_A 224 GDPTTFLQSDLSRDGKYLFVYILRGWSEND-VYWKRPGEKDF 264 (695)
T ss_dssp CCTTCEEEEEECTTSCCEEEEEEETTTEEE-EEEECTTCSSC
T ss_pred CCCEEEEEEEECCCCCEEEEEEeCCCCceE-EEEEcCCCCce
Confidence 3556788999999999998877665 5 66777655543
No 206
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=95.73 E-value=0.03 Score=38.39 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=42.3
Q ss_pred eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940 4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG 70 (78)
Q Consensus 4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~ 70 (78)
|. .||+.+++ ..-.++.+. +...-.+...|..++.++.|+. ++.||.++|+.+.+++.+
T Consensus 457 l~-A~D~~tG~-----~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~-l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 457 LI-AWDPVKQQ-----AAWEVPYVT-IFNGGTLSTAGNLVFEGSADGR-VIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp EE-EEETTTTE-----EEEEEEESS-SCCCCEEEETTTEEEEECTTSE-EEEEETTTCCEEEEEECS
T ss_pred EE-EEECCCCC-----eEeEccCCC-CccCccceECCCEEEEECCCCc-EEEEECCCCccceeeeCC
Confidence 44 57776664 444444333 3333456667889999999999 999999999999888754
No 207
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=95.51 E-value=0.078 Score=32.21 Aligned_cols=49 Identities=4% Similarity=-0.025 Sum_probs=38.8
Q ss_pred CCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940 19 SSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 19 ~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~ 69 (78)
+.+-++..+ +...++.+.++|+.++++..++. |..+|..+|+.+.++..
T Consensus 156 ~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~-v~~~d~~tG~~~w~~~~ 204 (276)
T 3no2_A 156 QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHC-FVQLNLESNRIVRRVNA 204 (276)
T ss_dssp CEEEEEECS-SCCCEEEECTTSCEEEECBTTSE-EEEECTTTCCEEEEEEG
T ss_pred CEEEEEECC-CCccceeEcCCCCEEEEeCCCCe-EEEEeCcCCcEEEEecC
Confidence 366666554 34566788999999999888888 99999999999988864
No 208
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=95.40 E-value=0.11 Score=30.37 Aligned_cols=34 Identities=12% Similarity=0.102 Sum_probs=27.9
Q ss_pred cCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcE
Q psy1940 29 SELACLALNQTGTMIATASSKGTLIRVWDTLKKVQ 63 (78)
Q Consensus 29 ~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~ 63 (78)
..+..++++++|..+++...++. |.+||......
T Consensus 192 ~~p~~i~~d~~g~l~v~~~~~~~-v~~~~~~~~~~ 225 (270)
T 1rwi_B 192 TAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGSTTS 225 (270)
T ss_dssp CSEEEEEECTTCCEEEEETTTSC-EEEECTTCSCC
T ss_pred CCceEEEECCCCCEEEEECCCCc-EEEEcCCCCcc
Confidence 56789999999988777777888 99999876543
No 209
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=95.38 E-value=0.037 Score=37.92 Aligned_cols=58 Identities=16% Similarity=0.258 Sum_probs=41.1
Q ss_pred EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCC
Q psy1940 7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGS 71 (78)
Q Consensus 7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~ 71 (78)
.||+.+++ ..-.++ +..++....+..+|..++.++.|+. +++||.++|+.+..+..+.
T Consensus 461 A~D~~tG~-----~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~-l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 461 AWDPVAQK-----AAWSVE-HVSPWNGGTLTTAGNVVFQGTADGR-LVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp EEETTTTE-----EEEEEE-ESSSCCCCEEEETTTEEEEECTTSE-EEEEETTTCCEEEEEECSS
T ss_pred EEeCCCCc-----EEeecC-CCCCCcCcceEeCCCEEEEECCCCc-EEEEECCCCceeeeeeCCC
Confidence 46766554 333333 2334455556678888999999999 9999999999999887543
No 210
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=95.16 E-value=0.05 Score=31.89 Aligned_cols=34 Identities=9% Similarity=0.123 Sum_probs=28.6
Q ss_pred ccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCc
Q psy1940 28 QSELACLALNQTGTMIATASSKGTLIRVWDTLKKV 62 (78)
Q Consensus 28 ~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~ 62 (78)
...+.+++++++|+.+++...++. |++++....+
T Consensus 233 ~~~p~~i~~~~~g~l~v~~~~~~~-v~~~~~~~~~ 266 (270)
T 1rwi_B 233 LNTPLAVAVDSDRTVYVADRGNDR-VVKLTSLEHH 266 (270)
T ss_dssp CSCEEEEEECTTCCEEEEEGGGTE-EEEECCCGGG
T ss_pred CCCceeEEECCCCCEEEEECCCCE-EEEEcCCCcc
Confidence 356789999999998888888998 9999977544
No 211
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=95.13 E-value=0.13 Score=34.86 Aligned_cols=33 Identities=9% Similarity=0.090 Sum_probs=26.4
Q ss_pred CccCEEEEEECCCCCEEEEEcC-----CCCEEEEeeCCC
Q psy1940 27 HQSELACLALNQTGTMIATASS-----KGTLIRVWDTLK 60 (78)
Q Consensus 27 h~~~i~~v~fs~dg~~l~s~~~-----d~~~i~i~d~~~ 60 (78)
|...+..++|||||++|+..+. +.. +.+||+.+
T Consensus 231 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~-l~~~d~~~ 268 (710)
T 2xdw_A 231 EPKWMGGAELSDDGRYVLLSIREGCDPVNR-LWYCDLQQ 268 (710)
T ss_dssp CTTCEEEEEECTTSCEEEEEEECSSSSCCE-EEEEEGGG
T ss_pred CCeEEEEEEEcCCCCEEEEEEEccCCCccE-EEEEECcc
Confidence 4555788999999999987764 556 99999876
No 212
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=95.01 E-value=0.014 Score=36.83 Aligned_cols=54 Identities=7% Similarity=0.083 Sum_probs=30.0
Q ss_pred EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940 7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68 (78)
Q Consensus 7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~ 68 (78)
.||..+++ ..-.+.. +++.+..+..+|+.+++++.|+. +..||..+|+.+..++
T Consensus 23 a~d~~tG~-----~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~-l~a~d~~tG~~~w~~~ 76 (369)
T 2hz6_A 23 AVSKRTGS-----IKWTLKE--DPVLQVPTHVEEPAFLPDPNDGS-LYTLGSKNNEGLTKLP 76 (369)
T ss_dssp EEETTTCC-----EEEEEEC--CCSCCCC-----CCEEECTTTCC-EEEC-----CCSEECS
T ss_pred EEECCCCC-----EEEEecC--CCceecceEcCCCEEEEeCCCCE-EEEEECCCCceeeeee
Confidence 56766654 5445554 45555556668888888899999 9999999888766554
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=94.90 E-value=0.099 Score=33.54 Aligned_cols=40 Identities=10% Similarity=-0.015 Sum_probs=31.3
Q ss_pred cCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940 29 SELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 29 ~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~ 69 (78)
.....++|+++|+.+++...++. |++||..++........
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~-I~~id~~~g~~~~~~~~ 170 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPR-VRLISVDDNKVTTVHPG 170 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTE-EEEEETTTTEEEEEEET
T ss_pred CCceEEEEeCCCCEEEEecCCCc-EEEEECCCCEEEEeecc
Confidence 35678999999997777777788 99999988776555443
No 214
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=94.69 E-value=0.083 Score=37.74 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=33.3
Q ss_pred CEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940 30 ELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68 (78)
Q Consensus 30 ~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~ 68 (78)
.+.+++..++..++.+-+.|+. +|+|++.++.++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~-LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYK-LKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCE-EEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCE-EEEEECCCCCeEeeec
Confidence 4677778888899999999999 9999999999988764
No 215
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=94.05 E-value=0.42 Score=32.68 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=25.8
Q ss_pred cCEEEEEECCCCCEEEEEcCCC-----CEEEEeeCCCC
Q psy1940 29 SELACLALNQTGTMIATASSKG-----TLIRVWDTLKK 61 (78)
Q Consensus 29 ~~i~~v~fs~dg~~l~s~~~d~-----~~i~i~d~~~~ 61 (78)
..+.++.|||||++|+..+.++ . |.+||+.++
T Consensus 268 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~-l~~~d~~~~ 304 (741)
T 1yr2_A 268 KRGHGASVSSDGRWVVITSSEGTDPVNT-VHVARVTNG 304 (741)
T ss_dssp TCEEEEEECTTSCEEEEEEECTTCSCCE-EEEEEEETT
T ss_pred eEEEEEEECCCCCEEEEEEEccCCCcce-EEEEECCCC
Confidence 3578999999999988876543 6 899998776
No 216
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=93.92 E-value=0.16 Score=34.79 Aligned_cols=50 Identities=16% Similarity=0.056 Sum_probs=33.2
Q ss_pred EEEcccCCcCCCCC-cEEecCCccCEEEEEECCCCCEEEEEcC-CCCEEEEeeCCCC
Q psy1940 7 SQDLSSTELSSSSS-PVTINAHQSELACLALNQTGTMIATASS-KGTLIRVWDTLKK 61 (78)
Q Consensus 7 i~d~~~~~~~~~~~-~~~~~~h~~~i~~v~fs~dg~~l~s~~~-d~~~i~i~d~~~~ 61 (78)
+.|.++.. .+. ...++.. ....++.++|||+++++++. +.+ |.++|+.+.
T Consensus 258 VID~~~~~---~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~-VsVid~~~~ 309 (595)
T 1fwx_A 258 VVDGRKEA---SSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPT-VTVLDVTRF 309 (595)
T ss_dssp EEECSGGG---CCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSB-EEEEEGGGH
T ss_pred EEeCcccC---CceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCe-EEEEECccc
Confidence 66776521 113 4555432 24478999999998887754 456 999999865
No 217
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=93.88 E-value=0.4 Score=29.49 Aligned_cols=48 Identities=8% Similarity=-0.001 Sum_probs=33.8
Q ss_pred CcEEecCCcc--CEEEEEECCCCCEEEEEcC--CCCEEEEeeCCCCcEEEEeeC
Q psy1940 20 SPVTINAHQS--ELACLALNQTGTMIATASS--KGTLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 20 ~~~~~~~h~~--~i~~v~fs~dg~~l~s~~~--d~~~i~i~d~~~~~~~~~~~~ 69 (78)
.+.+++ |.. ....++|+|||...++.+. ++. |++.|+.+++.+..+.-
T Consensus 11 vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~-v~~iD~~tg~v~~~i~l 62 (266)
T 2iwa_A 11 VLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSS-VRQVALQTGKVENIHKM 62 (266)
T ss_dssp EEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCE-EEEEETTTCCEEEEEEC
T ss_pred EEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCE-EEEEECCCCCEEEEEec
Confidence 445553 432 3578999999755555443 466 99999999999988763
No 218
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.68 E-value=0.074 Score=38.52 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=32.1
Q ss_pred CEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940 30 ELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68 (78)
Q Consensus 30 ~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~ 68 (78)
.+.+++..++.+++++-+.|++ +|+||+.++.++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~-LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYK-LKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCE-EEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCE-EEEEECCCCCeEEeec
Confidence 3445566778899999999999 9999999999988764
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=93.44 E-value=0.77 Score=28.14 Aligned_cols=43 Identities=9% Similarity=0.165 Sum_probs=32.2
Q ss_pred CccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCC
Q psy1940 27 HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGS 71 (78)
Q Consensus 27 h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~ 71 (78)
.......++++++|+..++...++. |.+||. +++.+..+..+.
T Consensus 228 ~~~~p~gi~~d~~G~lwva~~~~~~-v~~~d~-~g~~~~~i~~~~ 270 (326)
T 2ghs_A 228 IKGGMDGSVCDAEGHIWNARWGEGA-VDRYDT-DGNHIARYEVPG 270 (326)
T ss_dssp SSSEEEEEEECTTSCEEEEEETTTE-EEEECT-TCCEEEEEECSC
T ss_pred CCCCCCeeEECCCCCEEEEEeCCCE-EEEECC-CCCEEEEEECCC
Confidence 4455678999999987777766778 999998 577666665443
No 220
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=93.40 E-value=0.25 Score=30.52 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=31.5
Q ss_pred CccCEEEEEECCCCCEEEEEcC-----CCCEEEEeeCCCCcEEEEee
Q psy1940 27 HQSELACLALNQTGTMIATASS-----KGTLIRVWDTLKKVQLVELR 68 (78)
Q Consensus 27 h~~~i~~v~fs~dg~~l~s~~~-----d~~~i~i~d~~~~~~~~~~~ 68 (78)
|...+..++|+++|+.+++-.. +.. |.+||+.+++.+..+.
T Consensus 65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~-i~~~d~~tg~~~~~~~ 110 (343)
T 2qe8_A 65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPK-LVAWDTLNNQLSRVIY 110 (343)
T ss_dssp CCSCEEEEEECSSSEEEEEECHHHHTSCCE-EEEEETTTTEEEEEEE
T ss_pred ceeEeeEEEEcCCCcEEEEcCCCCcCCCCe-EEEEECCCCeEEEEEE
Confidence 4567899999999876655433 467 9999999998777665
No 221
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=93.22 E-value=0.57 Score=28.63 Aligned_cols=53 Identities=11% Similarity=0.062 Sum_probs=37.4
Q ss_pred EecCCccCEEEEEECCCCCEEEE-EcCCCCEEEEeeCCCCcEEEEee--CCCCCeEEe
Q psy1940 23 TINAHQSELACLALNQTGTMIAT-ASSKGTLIRVWDTLKKVQLVELR--RGSDPATLY 77 (78)
Q Consensus 23 ~~~~h~~~i~~v~fs~dg~~l~s-~~~d~~~i~i~d~~~~~~~~~~~--~~~~~~~~~ 77 (78)
.+++-.+.+..++++|+++.|++ ..+++. |...|.. ++.++.++ +..++..+.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~-I~~ld~~-g~v~~~i~l~g~~D~EGIa 76 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAA-IVEMTTN-GDLIRTIPLDFVKDLETIE 76 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEE-EEEEETT-CCEEEEEECSSCSSEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCe-EEEEeCC-CCEEEEEecCCCCChHHeE
Confidence 44555567999999998776665 666777 8888987 88887775 334555443
No 222
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=92.72 E-value=0.55 Score=28.98 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=28.7
Q ss_pred cCEEEEEECCCCCEE-EEEc---CCCCEEEEeeCCCCcEEEEeeC
Q psy1940 29 SELACLALNQTGTMI-ATAS---SKGTLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 29 ~~i~~v~fs~dg~~l-~s~~---~d~~~i~i~d~~~~~~~~~~~~ 69 (78)
..++.+++++++..+ ++-. .++. |.+||..+++....+.+
T Consensus 120 ~~~~~v~vd~~~g~~yvtd~~~~~~~~-i~v~d~~~g~~~r~~~~ 163 (343)
T 2qe8_A 120 SFVNDLAVDLIHNFVYISDPAPDDKAA-LIRVDLQTGLAARVLQG 163 (343)
T ss_dssp CCCCEEEEETTTTEEEEEECCSGGGCE-EEEEETTTCCEEEECTT
T ss_pred cccceEEEecCCCEEEEEcCccCCCCe-EEEEECCCCCEEEEecC
Confidence 356889999865555 4444 5677 99999998887666644
No 223
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=92.63 E-value=0.18 Score=31.03 Aligned_cols=55 Identities=7% Similarity=0.012 Sum_probs=37.2
Q ss_pred EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940 7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~ 69 (78)
++|..+.. .+.++....+ ....+++||+.|+++..++. +.+.|..+.+.+..++-
T Consensus 90 viD~~t~~-----v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~-l~viD~~t~~v~~~I~V 144 (266)
T 2iwa_A 90 IYDRRTLS-----NIKNFTHQMK--DGWGLATDGKILYGSDGTSI-LYEIDPHTFKLIKKHNV 144 (266)
T ss_dssp EEETTTTE-----EEEEEECCSS--SCCEEEECSSSEEEECSSSE-EEEECTTTCCEEEEEEC
T ss_pred EEECCCCc-----EEEEEECCCC--CeEEEEECCCEEEEECCCCe-EEEEECCCCcEEEEEEE
Confidence 56665544 5666653211 12346678888888777888 99999999888877763
No 224
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=92.55 E-value=0.39 Score=28.95 Aligned_cols=33 Identities=9% Similarity=-0.021 Sum_probs=24.4
Q ss_pred cCEEEEEECCCCCEEE-EEcCCCCEEEEeeC--CCCc
Q psy1940 29 SELACLALNQTGTMIA-TASSKGTLIRVWDT--LKKV 62 (78)
Q Consensus 29 ~~i~~v~fs~dg~~l~-s~~~d~~~i~i~d~--~~~~ 62 (78)
...+.++|+|||+.|+ +.+.++. |.+||+ .+|.
T Consensus 149 ~~pngi~~spdg~~lyv~~~~~~~-i~~~~~d~~~G~ 184 (297)
T 3g4e_A 149 DISNGLDWSLDHKIFYYIDSLSYS-VDAFDYDLQTGQ 184 (297)
T ss_dssp SBEEEEEECTTSCEEEEEEGGGTE-EEEEEECTTTCC
T ss_pred ccccceEEcCCCCEEEEecCCCCc-EEEEeccCCCCc
Confidence 3457899999998765 4566777 999986 4554
No 225
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=92.32 E-value=0.66 Score=27.19 Aligned_cols=38 Identities=8% Similarity=0.072 Sum_probs=30.2
Q ss_pred ecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcE
Q psy1940 24 INAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQ 63 (78)
Q Consensus 24 ~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~ 63 (78)
+..+...+.+++++++|+..++...++. |..||.. +..
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~-v~~~d~~-~~~ 47 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANM-ISCINLD-GKI 47 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTE-EEEECTT-CCE
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCc-EEEEcCC-CCe
Confidence 3445668899999999998887776788 9999987 544
No 226
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=91.94 E-value=0.48 Score=33.34 Aligned_cols=37 Identities=8% Similarity=0.306 Sum_probs=30.6
Q ss_pred CEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940 30 ELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 30 ~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~ 69 (78)
.|.++.+ +.+++++-+.|++ +|+||++++.++....-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~-LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCH-LKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCE-EEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCe-EEEEEcCCCceEEeecc
Confidence 4566655 4679999999999 99999999998877754
No 227
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=91.87 E-value=1.3 Score=26.72 Aligned_cols=41 Identities=7% Similarity=0.025 Sum_probs=30.2
Q ss_pred CcEEecCCccCEEEEEECCCCC-EEEEEcCCCCEEEEeeCCCCc
Q psy1940 20 SPVTINAHQSELACLALNQTGT-MIATASSKGTLIRVWDTLKKV 62 (78)
Q Consensus 20 ~~~~~~~h~~~i~~v~fs~dg~-~l~s~~~d~~~i~i~d~~~~~ 62 (78)
.+..+..+.......+|+|+|+ .+++...++. |..||. ++.
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~-i~~~~~-~g~ 77 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRR-VLGWRE-DGT 77 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTE-EEEEET-TSC
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCE-EEEEeC-CCC
Confidence 4455555555677899999998 5667777888 999997 454
No 228
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=91.41 E-value=0.78 Score=28.13 Aligned_cols=32 Identities=9% Similarity=-0.077 Sum_probs=24.5
Q ss_pred cCEEEEEECCCCCEEEEE-cCCCCEEEEeeCC--CC
Q psy1940 29 SELACLALNQTGTMIATA-SSKGTLIRVWDTL--KK 61 (78)
Q Consensus 29 ~~i~~v~fs~dg~~l~s~-~~d~~~i~i~d~~--~~ 61 (78)
...+.++|+|||+.|+.+ +.++. |.+||.. +|
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~-I~~~d~~~~~G 213 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNR-LMRVPLDARTG 213 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCE-EEEEEBCTTTC
T ss_pred cccCCeEEcCCCCEEEEEECCCCE-EEEEEcccccC
Confidence 456789999999877554 55677 9999975 55
No 229
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=91.33 E-value=0.44 Score=29.57 Aligned_cols=54 Identities=4% Similarity=-0.123 Sum_probs=37.1
Q ss_pred EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940 7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~ 69 (78)
+||..+.. ...+++..... . .+.+||+.|+.+..++. |.++|..+.+.+..++-
T Consensus 120 V~D~~Tl~-----~~~ti~~~~eG-w--GLt~Dg~~L~vSdGs~~-l~~iDp~T~~v~~~I~V 173 (268)
T 3nok_A 120 TWSGMPPQ-----RERTTRYSGEG-W--GLCYWNGKLVRSDGGTM-LTFHEPDGFALVGAVQV 173 (268)
T ss_dssp EEETTTTE-----EEEEEECSSCC-C--CEEEETTEEEEECSSSE-EEEECTTTCCEEEEEEC
T ss_pred EEECCcCc-----EEEEEeCCCce-e--EEecCCCEEEEECCCCE-EEEEcCCCCeEEEEEEe
Confidence 56666554 66666532211 2 33467888888877888 99999999988877764
No 230
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=91.31 E-value=0.62 Score=28.40 Aligned_cols=54 Identities=13% Similarity=0.101 Sum_probs=37.0
Q ss_pred EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940 7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~ 69 (78)
++|..+.. ...+++....+ ..+ .+||+.|+.+..++. |.++|..+.+.+..++-
T Consensus 89 v~D~~tl~-----~~~ti~~~~~G-wgl--t~dg~~L~vSdgs~~-l~~iDp~t~~~~~~I~V 142 (243)
T 3mbr_X 89 VYDLATLT-----PRARFRYPGEG-WAL--TSDDSHLYMSDGTAV-IRKLDPDTLQQVGSIKV 142 (243)
T ss_dssp EEETTTTE-----EEEEEECSSCC-CEE--EECSSCEEEECSSSE-EEEECTTTCCEEEEEEC
T ss_pred EEECCcCc-----EEEEEeCCCCc-eEE--eeCCCEEEEECCCCe-EEEEeCCCCeEEEEEEE
Confidence 56666554 66667643222 333 467777877777888 99999999888877764
No 231
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=91.26 E-value=0.95 Score=28.08 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=26.8
Q ss_pred EEECCCCCEEEEE-cCCCCEEEEeeCCCCcEEEEeeCCCCCeEE
Q psy1940 34 LALNQTGTMIATA-SSKGTLIRVWDTLKKVQLVELRRGSDPATL 76 (78)
Q Consensus 34 v~fs~dg~~l~s~-~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~ 76 (78)
+++ +|+.|+.. -.++. +.++|..+.+.+.+++-...+..|
T Consensus 101 it~--~g~~Ly~ltw~~~~-v~V~D~~Tl~~~~ti~~~~eGwGL 141 (268)
T 3nok_A 101 LAS--DGERLYQLTWTEGL-LFTWSGMPPQRERTTRYSGEGWGL 141 (268)
T ss_dssp EEE--CSSCEEEEESSSCE-EEEEETTTTEEEEEEECSSCCCCE
T ss_pred EEE--eCCEEEEEEccCCE-EEEEECCcCcEEEEEeCCCceeEE
Confidence 444 44445544 45666 999999999999998854443333
No 232
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=91.16 E-value=1.5 Score=26.33 Aligned_cols=40 Identities=8% Similarity=-0.048 Sum_probs=30.3
Q ss_pred cEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCc
Q psy1940 21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKV 62 (78)
Q Consensus 21 ~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~ 62 (78)
...+..+.+.++.++++++|+.+++...++. |..||.. ++
T Consensus 78 ~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~-v~~~~~~-g~ 117 (305)
T 3dr2_A 78 VDVLLDATAFTNGNAVDAQQRLVHCEHGRRA-ITRSDAD-GQ 117 (305)
T ss_dssp EEEEEESCSCEEEEEECTTSCEEEEETTTTE-EEEECTT-SC
T ss_pred EEEEeCCCCccceeeECCCCCEEEEECCCCE-EEEECCC-CC
Confidence 4455556677899999999997766666677 9999875 54
No 233
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=91.14 E-value=0.29 Score=30.23 Aligned_cols=54 Identities=7% Similarity=0.088 Sum_probs=36.7
Q ss_pred EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940 7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~ 69 (78)
++|..+.. ...+++... ....+++||+.|+.+..++. |.++|..+.+.+..++-
T Consensus 111 v~D~~t~~-----~~~ti~~~~---eG~glt~dg~~L~~SdGs~~-i~~iDp~T~~v~~~I~V 164 (262)
T 3nol_A 111 VWNIRNLR-----QVRSFNYDG---EGWGLTHNDQYLIMSDGTPV-LRFLDPESLTPVRTITV 164 (262)
T ss_dssp EEETTTCC-----EEEEEECSS---CCCCEEECSSCEEECCSSSE-EEEECTTTCSEEEEEEC
T ss_pred EEECccCc-----EEEEEECCC---CceEEecCCCEEEEECCCCe-EEEEcCCCCeEEEEEEe
Confidence 56666554 666676432 22334467888887777777 99999999888777654
No 234
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=90.92 E-value=1.8 Score=27.63 Aligned_cols=36 Identities=11% Similarity=0.183 Sum_probs=27.4
Q ss_pred CccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcE
Q psy1940 27 HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQ 63 (78)
Q Consensus 27 h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~ 63 (78)
+...+++++++|++..|+.+..++. |..||..++..
T Consensus 217 ~~~~p~~iav~p~~g~lyv~d~~~~-I~~~d~~~~~~ 252 (409)
T 3hrp_A 217 FSGKIGAVALDETEEWLYFVDSNKN-FGRFNVKTQEV 252 (409)
T ss_dssp SCSCCCBCEECTTSSEEEEECTTCE-EEEEETTTCCE
T ss_pred hcCCcEEEEEeCCCCeEEEEECCCc-EEEEECCCCCE
Confidence 4456788999995555666777888 99999887753
No 235
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=90.04 E-value=1.9 Score=26.62 Aligned_cols=60 Identities=13% Similarity=0.129 Sum_probs=35.9
Q ss_pred EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEc-CCCCEEEEeeCCCCcEEEEeeCCCCC
Q psy1940 7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATAS-SKGTLIRVWDTLKKVQLVELRRGSDP 73 (78)
Q Consensus 7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~-~d~~~i~i~d~~~~~~~~~~~~~~~~ 73 (78)
.+|+.++. ..+.+.... ........++|+.|+... .++. +.++|..+.+.+.+++-...+
T Consensus 69 ~vD~~Tgk-----v~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~-v~v~D~~t~~~~~ti~~~~eG 129 (262)
T 3nol_A 69 KVDIESGK-----TLQQIELGK-RYFGEGISDWKDKIVGLTWKNGL-GFVWNIRNLRQVRSFNYDGEG 129 (262)
T ss_dssp EECTTTCC-----EEEEEECCT-TCCEEEEEEETTEEEEEESSSSE-EEEEETTTCCEEEEEECSSCC
T ss_pred EEECCCCc-----EEEEEecCC-ccceeEEEEeCCEEEEEEeeCCE-EEEEECccCcEEEEEECCCCc
Confidence 45555443 555554332 223333333466666665 4566 999999999999998854443
No 236
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=89.53 E-value=0.92 Score=30.28 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=30.3
Q ss_pred EEEEECCCCCEEEEEc-------------------CCCCEEEEeeCCCCcEEEEeeCC
Q psy1940 32 ACLALNQTGTMIATAS-------------------SKGTLIRVWDTLKKVQLVELRRG 70 (78)
Q Consensus 32 ~~v~fs~dg~~l~s~~-------------------~d~~~i~i~d~~~~~~~~~~~~~ 70 (78)
+.+.|+|+++.++++. .+.. |.+||+.+++.+.++.-+
T Consensus 191 Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~-V~v~D~~~~k~~~tI~vg 247 (462)
T 2ece_A 191 YDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNR-IHFWDLRKRKRIHSLTLG 247 (462)
T ss_dssp CCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCE-EEEEETTTTEEEEEEESC
T ss_pred ceEEECCCCCEEEEccCcCccccccccchhhhhhccCCE-EEEEECCCCcEeeEEecC
Confidence 3578899999998874 3567 999999998887777653
No 237
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=89.23 E-value=2.1 Score=24.94 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=27.0
Q ss_pred CccCEEEEEECCCCCEEEEEcCCCCEEEEeeCC
Q psy1940 27 HQSELACLALNQTGTMIATASSKGTLIRVWDTL 59 (78)
Q Consensus 27 h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~ 59 (78)
+...+.+++++++|+..++...++. |..||..
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~~~~ 86 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANK-IGRITKK 86 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTE-EEEECTT
T ss_pred ccCceeeEEECCCCCEEEeCCCCCe-EEEECCC
Confidence 4567889999999998888777888 9999976
No 238
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=89.19 E-value=0.74 Score=28.93 Aligned_cols=30 Identities=10% Similarity=0.134 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940 39 TGTMIATASSKGTLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 39 dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~ 69 (78)
++..+++++.|+. +..||..+|+.+..++.
T Consensus 8 ~~~~v~~gs~dg~-v~a~d~~tG~~~W~~~~ 37 (369)
T 2hz6_A 8 PETLLFVSTLDGS-LHAVSKRTGSIKWTLKE 37 (369)
T ss_dssp CTTEEEEEETTSE-EEEEETTTCCEEEEEEC
T ss_pred eCCEEEEEcCCCE-EEEEECCCCCEEEEecC
Confidence 5778999999999 99999999999877765
No 239
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=88.68 E-value=1.1 Score=30.58 Aligned_cols=35 Identities=14% Similarity=0.329 Sum_probs=29.1
Q ss_pred EECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940 35 ALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG 70 (78)
Q Consensus 35 ~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~ 70 (78)
.+...|..++.++.|+. ++.||.++|+.+..++..
T Consensus 464 ~~~t~gg~vf~g~~dg~-l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 464 TLSTAGNLVFQGTAAGQ-MHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp EEEETTTEEEEECTTSE-EEEEETTTCCEEEEEECS
T ss_pred eeEeCCCEEEEECCccc-chhhhhhcChhheEecCC
Confidence 34446778999999999 999999999999888654
No 240
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=88.41 E-value=1.1 Score=29.92 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=28.4
Q ss_pred ccCEEEEEECCC---CCEEEEEcCCCCEEEEeeCCC
Q psy1940 28 QSELACLALNQT---GTMIATASSKGTLIRVWDTLK 60 (78)
Q Consensus 28 ~~~i~~v~fs~d---g~~l~s~~~d~~~i~i~d~~~ 60 (78)
..+|..+.|.|- |..|++-..|+. ||+||+..
T Consensus 124 ~s~I~qVlWHPl~~~ds~LVVLtsD~~-Ir~yDl~~ 158 (452)
T 3pbp_A 124 KSSIKKVLFHPKSYRDSCIVVLKEDDT-ITMFDILN 158 (452)
T ss_dssp CCCEEEEEECTTBGGGCEEEEEETTSC-EEEEETTC
T ss_pred CCceeEEEeccccCCCCeEEEEecCCE-EEEEEccc
Confidence 578999999994 568999999999 99999886
No 241
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=88.24 E-value=1 Score=28.81 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=22.9
Q ss_pred CEEEEEECCCCCEEEEEc-CCCCEEEEeeCC
Q psy1940 30 ELACLALNQTGTMIATAS-SKGTLIRVWDTL 59 (78)
Q Consensus 30 ~i~~v~fs~dg~~l~s~~-~d~~~i~i~d~~ 59 (78)
.-+.++|||||+.|+.+. ..+. |..||+.
T Consensus 222 ~pNGia~spDg~~lYvadt~~~~-I~~~~~~ 251 (355)
T 3sre_A 222 FANGINISPDGKYVYIAELLAHK-IHVYEKH 251 (355)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTE-EEEEEEC
T ss_pred ccCcceECCCCCEEEEEeCCCCe-EEEEEEC
Confidence 458899999998877765 4566 9999876
No 242
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=88.17 E-value=0.92 Score=30.47 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940 39 TGTMIATASSKGTLIRVWDTLKKVQLVELRRG 70 (78)
Q Consensus 39 dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~ 70 (78)
.+..++.++.|+. +..+|.++|+.+.+++..
T Consensus 474 ~gg~v~~g~~dg~-l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 474 KGGLVWYATLDGY-LKALDNKDGKELWNFKMP 504 (571)
T ss_dssp TTTEEEEECTTSE-EEEEETTTCCEEEEEECS
T ss_pred CCCEEEEEcCCCe-EEEEECCCCCEEEEEeCC
Confidence 4667888999999 999999999999888743
No 243
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=87.94 E-value=2.7 Score=24.53 Aligned_cols=37 Identities=14% Similarity=0.020 Sum_probs=29.5
Q ss_pred CCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEE
Q psy1940 26 AHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQL 64 (78)
Q Consensus 26 ~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~ 64 (78)
.....+.+++++++|+..++...++. |.++|.. ++..
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~-v~~~~~~-~~~~ 53 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANK-ISSLDQS-GRIK 53 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTE-EEEECTT-SCEE
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCe-EEEECCC-CceE
Confidence 34567889999999998888777888 9999987 5543
No 244
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=86.92 E-value=5.5 Score=27.06 Aligned_cols=33 Identities=6% Similarity=0.130 Sum_probs=23.8
Q ss_pred ccCEEEEEECCCCCEEEEEcC----CCCEEEEeeCCCC
Q psy1940 28 QSELACLALNQTGTMIATASS----KGTLIRVWDTLKK 61 (78)
Q Consensus 28 ~~~i~~v~fs~dg~~l~s~~~----d~~~i~i~d~~~~ 61 (78)
.....++.|||||++|+.... +.. +.++|+.++
T Consensus 233 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~-i~~~d~~~~ 269 (693)
T 3iuj_A 233 HHRYVGATVTEDDRFLLISAANSTSGNR-LYVKDLSQE 269 (693)
T ss_dssp CCSEEEEEECTTSCEEEEEEESSSSCCE-EEEEETTST
T ss_pred CeEEEEEEEcCCCCEEEEEEccCCCCcE-EEEEECCCC
Confidence 334678999999998865432 236 889998765
No 245
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=86.41 E-value=1.3 Score=29.82 Aligned_cols=31 Identities=19% Similarity=0.469 Sum_probs=26.5
Q ss_pred CCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940 39 TGTMIATASSKGTLIRVWDTLKKVQLVELRRG 70 (78)
Q Consensus 39 dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~ 70 (78)
.|..++.++.|+. ++.+|.++|+.+.+++..
T Consensus 496 agglvf~g~~dg~-l~A~D~~tG~~lW~~~~~ 526 (582)
T 1flg_A 496 AGNLVFTGTGDGY-FKAFDAKSGKELWKFQTG 526 (582)
T ss_dssp TTTEEEEECTTSE-EEEEETTTCCEEEEEECS
T ss_pred CCCEEEEECCCCc-EEEEECCCCCEEEEecCC
Confidence 4667888999999 999999999999888753
No 246
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=86.03 E-value=0.69 Score=31.95 Aligned_cols=32 Identities=9% Similarity=-0.020 Sum_probs=24.5
Q ss_pred CEEEEEEC-CCCCEEEEEcC-----CCCEEEEeeCCCC-c
Q psy1940 30 ELACLALN-QTGTMIATASS-----KGTLIRVWDTLKK-V 62 (78)
Q Consensus 30 ~i~~v~fs-~dg~~l~s~~~-----d~~~i~i~d~~~~-~ 62 (78)
.+...+|| |||++||-+.. ... |.++|+.++ +
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~-l~v~dl~~g~~ 213 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYT-IEFKRISDPSQ 213 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEE-EEEEETTCTTC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEE-EEEEECCCCCE
Confidence 56789999 99998885432 235 899999988 5
No 247
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=85.80 E-value=2.8 Score=26.69 Aligned_cols=42 Identities=17% Similarity=0.097 Sum_probs=30.4
Q ss_pred cEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcE
Q psy1940 21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQ 63 (78)
Q Consensus 21 ~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~ 63 (78)
+.++...-.....++|.|||+.+++....+. |++++..++..
T Consensus 24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~-I~~v~~~~g~~ 65 (347)
T 3das_A 24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEAT-ITRVDAKTGRK 65 (347)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCE-EEEECTTTCCE
T ss_pred eEEeecCCCCceEEEEcCCCcEEEEEecCCE-EEEEECCCCcE
Confidence 3344444456689999999998887766888 99888665543
No 248
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=83.39 E-value=5.7 Score=24.14 Aligned_cols=38 Identities=11% Similarity=-0.064 Sum_probs=26.7
Q ss_pred CCCEEEEE-cCCCCEEEEeeCCCCcEEEEeeCCCCCeEEe
Q psy1940 39 TGTMIATA-SSKGTLIRVWDTLKKVQLVELRRGSDPATLY 77 (78)
Q Consensus 39 dg~~l~s~-~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~ 77 (78)
+++.|+.. -.++. +.++|..+.+.+.+++....+..|+
T Consensus 73 ~~~~ly~ltw~~~~-v~v~D~~tl~~~~ti~~~~~Gwglt 111 (243)
T 3mbr_X 73 WRDRLIQLTWRNHE-GFVYDLATLTPRARFRYPGEGWALT 111 (243)
T ss_dssp ETTEEEEEESSSSE-EEEEETTTTEEEEEEECSSCCCEEE
T ss_pred eCCEEEEEEeeCCE-EEEEECCcCcEEEEEeCCCCceEEe
Confidence 35555554 45666 9999999999999998655554443
No 249
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=83.35 E-value=5.5 Score=23.98 Aligned_cols=40 Identities=20% Similarity=0.142 Sum_probs=28.8
Q ss_pred CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC
Q psy1940 20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK 61 (78)
Q Consensus 20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~ 61 (78)
....|... .....++|+++|+.+++-..++. |..+|...+
T Consensus 24 ~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~-I~~~d~~g~ 63 (306)
T 2p4o_A 24 IITSFPVN-TFLENLASAPDGTIFVTNHEVGE-IVSITPDGN 63 (306)
T ss_dssp EEEEECTT-CCEEEEEECTTSCEEEEETTTTE-EEEECTTCC
T ss_pred EeEeCCCC-CCcceEEECCCCCEEEEeCCCCe-EEEECCCCc
Confidence 44455433 45678999999997777667888 999987643
No 250
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=81.75 E-value=3 Score=28.73 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=31.5
Q ss_pred CEEEEEECCCCCEEEEEcCCCCEEEEeeCCC----------CcEEEEeeCCCCC
Q psy1940 30 ELACLALNQTGTMIATASSKGTLIRVWDTLK----------KVQLVELRRGSDP 73 (78)
Q Consensus 30 ~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~----------~~~~~~~~~~~~~ 73 (78)
...-++|+|||....+.-.|+. |.+||+.. ...+.++.-|-.|
T Consensus 332 gP~h~aF~~dG~aY~t~~ldsq-V~kwdi~~a~~~~~g~~~~~vi~kidV~yqp 384 (595)
T 1fwx_A 332 GPLHTAFDGRGNAYTSLFLDSQ-VVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP 384 (595)
T ss_dssp CEEEEEECTTSEEEEEETTTTE-EEEEEHHHHHHHHHTCSCCCEEEEEECSSCE
T ss_pred CcceEEECCCCeEEEEEecCCc-EEEEEhhHhhhhhcccccceeEEEeeccccc
Confidence 3466899999954556677777 99999877 4567777766554
No 251
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=80.68 E-value=6.3 Score=22.86 Aligned_cols=36 Identities=6% Similarity=0.013 Sum_probs=27.5
Q ss_pred CCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcE
Q psy1940 26 AHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQ 63 (78)
Q Consensus 26 ~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~ 63 (78)
.+...+.+++++++|+..++...++. |..+|. ++..
T Consensus 227 ~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g~~ 262 (300)
T 2qc5_A 227 TPNARPHAITAGKNSEIWFTEWGANQ-IGRITN-DNTI 262 (300)
T ss_dssp STTCCEEEEEECSTTCEEEEETTTTE-EEEECT-TSCE
T ss_pred CCCCCceEEEECCCCCEEEeccCCCe-EEEECC-CCcE
Confidence 34566789999999997777666788 999998 4543
No 252
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=78.87 E-value=7.9 Score=22.92 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=29.1
Q ss_pred EecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68 (78)
Q Consensus 23 ~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~ 68 (78)
.+..+...+.++...++|+ +..++.++. +..+|.. +..+..+.
T Consensus 131 ~~~~~~~~~~~~~~~~~g~-l~vgt~~~~-l~~~d~~-g~~~~~~~ 173 (330)
T 3hxj_A 131 RFKTKKAIYATPIVSEDGT-IYVGSNDNY-LYAINPD-GTEKWRFK 173 (330)
T ss_dssp EEECSSCCCSCCEECTTSC-EEEECTTSE-EEEECTT-SCEEEEEE
T ss_pred EEcCCCceeeeeEEcCCCE-EEEEcCCCE-EEEECCC-CCEeEEEe
Confidence 3344444556667777776 556777788 9999988 77666554
No 253
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=78.46 E-value=7.8 Score=22.62 Aligned_cols=44 Identities=7% Similarity=-0.021 Sum_probs=28.4
Q ss_pred cCEEEEEECCCCCEEEEEc-CCCCEEEEeeCCCCcEEEEeeCCCCC
Q psy1940 29 SELACLALNQTGTMIATAS-SKGTLIRVWDTLKKVQLVELRRGSDP 73 (78)
Q Consensus 29 ~~i~~v~fs~dg~~l~s~~-~d~~~i~i~d~~~~~~~~~~~~~~~~ 73 (78)
...+.++++|+++.|+.+. ..+. |.++|...+.....+.....|
T Consensus 167 ~~P~gia~d~~~~~lyv~d~~~~~-I~~~~~~g~~~~~~~~~~~~P 211 (267)
T 1npe_A 167 GLPNGLTFDAFSSQLCWVDAGTHR-AECLNPAQPGRRKVLEGLQYP 211 (267)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTE-EEEEETTEEEEEEEEECCCSE
T ss_pred CCCcEEEEcCCCCEEEEEECCCCE-EEEEecCCCceEEEecCCCCc
Confidence 3567899999887666554 4566 999998754443333433334
No 254
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=78.45 E-value=4.8 Score=27.39 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=25.8
Q ss_pred CCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940 39 TGTMIATASSKGTLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 39 dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~ 69 (78)
.|..++.++.|+. ++.+|.++|+.+.+++.
T Consensus 483 agg~vf~gt~dg~-l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 483 AGDLVFYGTLDGY-LKARDSDTGDLLWKFKI 512 (599)
T ss_dssp TTTEEEEECTTSE-EEEEETTTCCEEEEEEC
T ss_pred cCCEEEEECCCCe-EEEEECCCCCEEEEeeC
Confidence 4667778999999 99999999999988764
No 255
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=78.07 E-value=2.9 Score=25.34 Aligned_cols=34 Identities=9% Similarity=0.081 Sum_probs=27.2
Q ss_pred cCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcE
Q psy1940 29 SELACLALNQTGTMIATASSKGTLIRVWDTLKKVQ 63 (78)
Q Consensus 29 ~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~ 63 (78)
....+++++++|+.++++..++. |..||..++..
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~-i~~~~~~~~~~ 52 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGR-VIKYEGPNSGF 52 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSE-EEEECCTTTCE
T ss_pred CCceEEEEcCCCCEEEEEcCCCe-EEEECCCCCce
Confidence 34567899999998888888898 99999876543
No 256
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=77.60 E-value=8.1 Score=24.67 Aligned_cols=29 Identities=7% Similarity=0.208 Sum_probs=25.4
Q ss_pred EEEEEECCCCCEEEEEcCCCCEEEEeeCCC
Q psy1940 31 LACLALNQTGTMIATASSKGTLIRVWDTLK 60 (78)
Q Consensus 31 i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~ 60 (78)
.+.|++.|||+.|++...++. +..+|+++
T Consensus 187 ~nGIv~~pdg~~Liv~~~~g~-L~~fD~~~ 215 (334)
T 2p9w_A 187 YSGITFDPHSNKLIAFGGPRA-LTAFDVSK 215 (334)
T ss_dssp CSEEEEETTTTEEEEESSSSS-EEEEECSS
T ss_pred cceEEEeCCCCEEEEEcCCCe-EEEEcCCC
Confidence 679999999999998877998 99999774
No 257
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=77.38 E-value=14 Score=24.77 Aligned_cols=63 Identities=11% Similarity=0.130 Sum_probs=38.4
Q ss_pred eeeeEEEcccCCcCCCCCcEEec-CC-ccCEEEEEE-----------C--CCCCEEEEE-cCCCCEEEEeeCCCC----c
Q psy1940 3 YLQCSQDLSSTELSSSSSPVTIN-AH-QSELACLAL-----------N--QTGTMIATA-SSKGTLIRVWDTLKK----V 62 (78)
Q Consensus 3 ~~~~i~d~~~~~~~~~~~~~~~~-~h-~~~i~~v~f-----------s--~dg~~l~s~-~~d~~~i~i~d~~~~----~ 62 (78)
||. +.|+...++.-++.++.+. .+ .++..-..| + +++++|+.. ..++. |.++|+.+. +
T Consensus 44 ~la-~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~-I~viD~~t~p~~p~ 121 (462)
T 2ece_A 44 FIA-VVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSR-IYIIDTKPNPREPK 121 (462)
T ss_dssp EEE-EEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCC-EEEEECCSCTTSCE
T ss_pred eEE-EEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCe-EEEEECCCCCCCce
Confidence 566 7788765554455666554 12 223443445 7 888877764 55566 999998754 4
Q ss_pred EEEEe
Q psy1940 63 QLVEL 67 (78)
Q Consensus 63 ~~~~~ 67 (78)
....+
T Consensus 122 ~~k~i 126 (462)
T 2ece_A 122 IIKVI 126 (462)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 55555
No 258
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=75.56 E-value=13 Score=24.31 Aligned_cols=41 Identities=12% Similarity=0.051 Sum_probs=28.0
Q ss_pred cEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCc
Q psy1940 21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKV 62 (78)
Q Consensus 21 ~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~ 62 (78)
+.++...-.....++|.|||+.+++-...+. |.+++..++.
T Consensus 19 ~~~~a~~l~~P~~~a~~pdG~l~V~e~~gg~-I~~~~~~~g~ 59 (454)
T 1cru_A 19 KKVILSNLNKPHALLWGPDNQIWLTERATGK-ILRVNPESGS 59 (454)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCE-EEEECTTTCC
T ss_pred EEEEECCCCCceEEEEcCCCcEEEEEcCCCE-EEEEECCCCc
Confidence 3344333445679999999998887665567 8888765554
No 259
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=74.60 E-value=12 Score=22.87 Aligned_cols=29 Identities=7% Similarity=0.060 Sum_probs=24.7
Q ss_pred CCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940 40 GTMIATASSKGTLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 40 g~~l~s~~~d~~~i~i~d~~~~~~~~~~~~ 69 (78)
+..|+.++.++. +.++|..+|+.+...+.
T Consensus 318 ~~~l~v~~~~g~-l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 318 NGNLVVGDSEGY-LHWINVEDGRFVAQQKV 346 (376)
T ss_dssp TTEEEEECTTSE-EEEEETTTCCEEEEEEC
T ss_pred CCEEEEEeCCCe-EEEEECCCCcEEEEEec
Confidence 467888999998 99999999998877664
No 260
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=73.88 E-value=4.1 Score=26.26 Aligned_cols=46 Identities=13% Similarity=0.048 Sum_probs=30.1
Q ss_pred CEEEEEECC-CCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEE
Q psy1940 30 ELACLALNQ-TGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATL 76 (78)
Q Consensus 30 ~i~~v~fs~-dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~ 76 (78)
....++++| ++..|+.+...+. |+.+|...+...........|..+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~-I~~id~~~~~v~~~~~~~~~P~~i 184 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHP-TRLIDFEKEYVSTVYSGLSKVRTI 184 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEE-EEEEETTTTEEEEEECCCSCEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCc-EEEEECCCCEEEEEecCCCCcceE
Confidence 346789998 4556776666577 999999876654444444444444
No 261
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=73.69 E-value=6.4 Score=23.69 Aligned_cols=31 Identities=6% Similarity=0.108 Sum_probs=24.1
Q ss_pred EEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcE
Q psy1940 31 LACLALNQTGTMIATASSKGTLIRVWDTLKKVQ 63 (78)
Q Consensus 31 i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~ 63 (78)
...++++++|+..++....+. |.++|.. |+.
T Consensus 214 P~gi~vd~dG~l~va~~~~~~-V~~~~~~-G~~ 244 (306)
T 2p4o_A 214 IDDFAFDVEGNLYGATHIYNS-VVRIAPD-RST 244 (306)
T ss_dssp CSSEEEBTTCCEEEECBTTCC-EEEECTT-CCE
T ss_pred CCCeEECCCCCEEEEeCCCCe-EEEECCC-CCE
Confidence 456889999987777666788 9999975 654
No 262
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=70.20 E-value=22 Score=24.43 Aligned_cols=29 Identities=21% Similarity=0.209 Sum_probs=24.5
Q ss_pred CCC---EEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940 39 TGT---MIATASSKGTLIRVWDTLKKVQLVELR 68 (78)
Q Consensus 39 dg~---~l~s~~~d~~~i~i~d~~~~~~~~~~~ 68 (78)
+|+ .++.++.+|. +.++|.++|+.+...+
T Consensus 315 ~G~~~~~v~~~~~~G~-l~~lD~~tG~~l~~~~ 346 (689)
T 1yiq_A 315 DGKPRKVLMQAPKNGF-FYVIDRATGELLSAKG 346 (689)
T ss_dssp TTEEEEEEEECCTTSE-EEEEETTTCCEEEEEE
T ss_pred CCcEEEEEEEECCCCe-EEEEECCCCCEecccc
Confidence 565 7889999999 9999999999885544
No 263
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=69.23 E-value=8.6 Score=24.02 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=21.8
Q ss_pred cCEEEEEECCCCC-EEEEEcCCCCEEEEeeCC
Q psy1940 29 SELACLALNQTGT-MIATASSKGTLIRVWDTL 59 (78)
Q Consensus 29 ~~i~~v~fs~dg~-~l~s~~~d~~~i~i~d~~ 59 (78)
.....++|.|||+ .++ +...+. |++++..
T Consensus 18 ~~P~~i~~~pdG~~l~V-~e~~G~-i~~~~~~ 47 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLI-TLRGGE-LRHWQAG 47 (353)
T ss_dssp SSEEEEEECSTTCCEEE-EETTTE-EEEEETT
T ss_pred CCcEEEEEcCCCCEEEE-EeCCce-EEEEeCC
Confidence 3457899999999 555 456788 9988853
No 264
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=68.82 E-value=16 Score=22.71 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=24.8
Q ss_pred CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEee
Q psy1940 20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWD 57 (78)
Q Consensus 20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d 57 (78)
.+..+...-.....++|.|||+.+++ ..++. |.+++
T Consensus 22 ~~~~va~~l~~P~~ia~~pdG~l~V~-e~~g~-I~~i~ 57 (352)
T 2ism_A 22 RVEEVVGGLEVPWALAFLPDGGMLIA-ERPGR-IRLFR 57 (352)
T ss_dssp CEEEEECCCSCEEEEEECTTSCEEEE-ETTTE-EEEEE
T ss_pred EEEEEECCCCCceEEEEcCCCeEEEE-eCCCe-EEEEE
Confidence 33444433445678999999986555 55688 99888
No 265
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=67.68 E-value=20 Score=23.09 Aligned_cols=33 Identities=9% Similarity=0.110 Sum_probs=24.8
Q ss_pred CEEEEEECC-CCCEEEEEcCCCCEEEEeeCCCCcE
Q psy1940 30 ELACLALNQ-TGTMIATASSKGTLIRVWDTLKKVQ 63 (78)
Q Consensus 30 ~i~~v~fs~-dg~~l~s~~~d~~~i~i~d~~~~~~ 63 (78)
....++++| +|..+++-..++. |..+|...+..
T Consensus 227 ~p~giavdp~~g~lyv~d~~~~~-V~~~~~~~~~~ 260 (430)
T 3tc9_A 227 NCNGAETHPINGELYFNSWNAGQ-VFRYDFTTQET 260 (430)
T ss_dssp SCCCEEECTTTCCEEEEETTTTE-EEEEETTTTEE
T ss_pred CceEEEEeCCCCEEEEEECCCCE-EEEEECCCCcE
Confidence 346788999 7776666667777 99999876654
No 266
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=67.40 E-value=22 Score=22.89 Aligned_cols=47 Identities=13% Similarity=0.260 Sum_probs=32.7
Q ss_pred cCEEEEEE--CCC-CC-EEEEEcCCCCEEEEeeCC-------CCcEEEEeeCCCCCeEE
Q psy1940 29 SELACLAL--NQT-GT-MIATASSKGTLIRVWDTL-------KKVQLVELRRGSDPATL 76 (78)
Q Consensus 29 ~~i~~v~f--s~d-g~-~l~s~~~d~~~i~i~d~~-------~~~~~~~~~~~~~~~~~ 76 (78)
..+..+++ +|. |+ +++...+++. +..|++. +++.++++.-+..+..|
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~-~~q~~l~~~~~g~~~~~lVR~f~lgsq~Egc 185 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGE-FEQYELKADKNGYISGKKVRAFKMNSQTEGM 185 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSE-EEEEEEEECTTSCEEEEEEEEEECSSCEEEE
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCe-EEEEEEEeCCCCcccceEEEEecCCCCcceE
Confidence 44566777 774 44 6788888898 9998872 34677888777666554
No 267
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=65.68 E-value=9.4 Score=26.63 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=24.8
Q ss_pred EEEEE-ECCCCCEEEEE----cCCCCEEEEeeCCCCcEE
Q psy1940 31 LACLA-LNQTGTMIATA----SSKGTLIRVWDTLKKVQL 64 (78)
Q Consensus 31 i~~v~-fs~dg~~l~s~----~~d~~~i~i~d~~~~~~~ 64 (78)
...++ ++|||++++.+ +.|-.+++++|+.+++.+
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~ 169 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFV 169 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEEC
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcC
Confidence 34566 89999987764 334344999999998765
No 268
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=63.07 E-value=23 Score=23.89 Aligned_cols=32 Identities=9% Similarity=0.275 Sum_probs=24.8
Q ss_pred CEEEEEECCCCCEEEEEcCC-CCEEEEeeCCCCc
Q psy1940 30 ELACLALNQTGTMIATASSK-GTLIRVWDTLKKV 62 (78)
Q Consensus 30 ~i~~v~fs~dg~~l~s~~~d-~~~i~i~d~~~~~ 62 (78)
...++++.++|+.++.|+.+ .. +.+||..++.
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~-v~~yd~~t~~ 276 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKK-TSLYDSSSDS 276 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTC-EEEEEGGGTE
T ss_pred ccccccCCCCCCEEEeCCCCCCc-eEEecCcCCc
Confidence 34567888999999999854 46 9999987653
No 269
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=63.06 E-value=28 Score=22.62 Aligned_cols=43 Identities=9% Similarity=0.149 Sum_probs=33.6
Q ss_pred EEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCe
Q psy1940 31 LACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPA 74 (78)
Q Consensus 31 i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~ 74 (78)
--++..|+.-..++.-..-|. +.+||+.+|.++..-+-..+++
T Consensus 262 PVamqvs~kygviyviTK~G~-ihlyDleTgt~i~~nrIS~d~i 304 (365)
T 2xzh_A 262 PVAMQISEKHDVVFLITKYGY-IHLYDLETGTCIYMNRISGETI 304 (365)
T ss_dssp EEEEEEETTTTEEEEEETTSE-EEEEETTTCCEEEEEECCSSCE
T ss_pred eEEEEecccCCEEEEEeCCcE-EEEEEcccCcEEEEeccCCCce
Confidence 345677776677888889999 9999999999998776555543
No 270
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=62.87 E-value=28 Score=22.45 Aligned_cols=45 Identities=7% Similarity=-0.005 Sum_probs=29.1
Q ss_pred CEEEEEECCC--CCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940 30 ELACLALNQT--GTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75 (78)
Q Consensus 30 ~i~~v~fs~d--g~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~ 75 (78)
....++++|+ +..|+.+...+. |+.+|..++...........|..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~-I~~id~~~g~v~~~~~~~~~P~g 186 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDA-FRHVDFVNQYVDIKTTNIGQCAD 186 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSC-EEEEETTTTEEEEECCCCSCEEE
T ss_pred CCceEEEccccCCCEEEEEeCCCC-EEEEECCCCEEEEeecCCCCccE
Confidence 3468999995 445666655577 99999987766544443333433
No 271
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=62.70 E-value=8.5 Score=26.36 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=26.8
Q ss_pred CCCC---CEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940 37 NQTG---TMIATASSKGTLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 37 s~dg---~~l~s~~~d~~~i~i~d~~~~~~~~~~~~ 69 (78)
..+| ..++.++.+|. +.++|..+|+.+..++.
T Consensus 321 ~~dG~~~~~l~~~~~~G~-l~~lD~~tG~~l~~~~~ 355 (677)
T 1kb0_A 321 KIAGKPRKVILHAPKNGF-FFVLDRTNGKFISAKNF 355 (677)
T ss_dssp EETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEES
T ss_pred ccCCcEeeEEEEECCCCE-EEEEECCCCCEeccccc
Confidence 3467 68899999999 99999999999877653
No 272
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=61.65 E-value=24 Score=24.71 Aligned_cols=40 Identities=8% Similarity=-0.047 Sum_probs=26.4
Q ss_pred CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCC
Q psy1940 20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLK 60 (78)
Q Consensus 20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~ 60 (78)
....++..+ ....+..+|||++++.++.-...+.++|.+.
T Consensus 315 ~~~~iP~pk-sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k 354 (638)
T 3sbq_A 315 FTRYVPVPK-NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDK 354 (638)
T ss_dssp SEEEEEESS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred eEEEEeCCC-CCcceeeCCCCCEEEEcCCCCCeEEEEEeeh
Confidence 334443333 3367889999999988765443399998773
No 273
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=61.42 E-value=34 Score=23.62 Aligned_cols=32 Identities=13% Similarity=0.049 Sum_probs=22.5
Q ss_pred cCEEEEEECCCCCEEEEEcCC---CCEEEEeeCCCC
Q psy1940 29 SELACLALNQTGTMIATASSK---GTLIRVWDTLKK 61 (78)
Q Consensus 29 ~~i~~v~fs~dg~~l~s~~~d---~~~i~i~d~~~~ 61 (78)
.....+.|||||++|+..+.+ .. +.++|+.++
T Consensus 271 ~~~~~~~~SpDg~~l~~~~~~~~~~~-l~~~d~~~~ 305 (751)
T 2xe4_A 271 LFSAFMYKAADTNTLCIGSQSPETAE-VHLLDLRKG 305 (751)
T ss_dssp TCEEEEEECTTSSEEEEEEECSSCEE-EEEEESSSC
T ss_pred ceEEEEEECCCCCEEEEEecCCCCce-EEEEECCCC
Confidence 345678999999988865422 24 677788765
No 274
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=61.24 E-value=23 Score=20.88 Aligned_cols=36 Identities=8% Similarity=0.120 Sum_probs=18.5
Q ss_pred ccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940 28 QSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68 (78)
Q Consensus 28 ~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~ 68 (78)
...+.++...++|...+ ++ +. +..+| .++..+..+.
T Consensus 176 ~~~~~~~~~d~~g~l~v-~t--~~-l~~~d-~~g~~~~~~~ 211 (330)
T 3hxj_A 176 DAITSAASIGKDGTIYF-GS--DK-VYAIN-PDGTEKWNFY 211 (330)
T ss_dssp SCCCSCCEECTTCCEEE-ES--SS-EEEEC-TTSCEEEEEC
T ss_pred CCceeeeEEcCCCEEEE-Ee--CE-EEEEC-CCCcEEEEEc
Confidence 34445555555665333 33 55 66666 5555544443
No 275
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=59.29 E-value=28 Score=21.25 Aligned_cols=30 Identities=13% Similarity=0.126 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940 39 TGTMIATASSKGTLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 39 dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~ 69 (78)
++..++.++.++. +..+|..+|+.+...+.
T Consensus 102 ~~~~v~v~~~~g~-l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 102 SGGHVYIGSEKAQ-VYALNTSDGTVAWQTKV 131 (376)
T ss_dssp ETTEEEEEETTSE-EEEEETTTCCEEEEEEC
T ss_pred eCCEEEEEcCCCE-EEEEECCCCCEEEEEeC
Confidence 3557777888898 99999999988766654
No 276
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=58.46 E-value=27 Score=20.91 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=23.5
Q ss_pred CEEEEEECC-CCCEEEEEcC-----------------CCCEEEEeeCCCCcE
Q psy1940 30 ELACLALNQ-TGTMIATASS-----------------KGTLIRVWDTLKKVQ 63 (78)
Q Consensus 30 ~i~~v~fs~-dg~~l~s~~~-----------------d~~~i~i~d~~~~~~ 63 (78)
..+.+++.+ +|+..++-.. ++. +..+|..++..
T Consensus 127 ~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~-v~~~d~~~~~~ 177 (322)
T 2fp8_A 127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGR-LIKYDPSTKET 177 (322)
T ss_dssp CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEE-EEEEETTTTEE
T ss_pred ccceEEEecCCCEEEEECCcccccccccceehcccCCCce-EEEEeCCCCEE
Confidence 467899999 9987766432 356 78888776654
No 277
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=58.15 E-value=41 Score=22.94 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=24.8
Q ss_pred CCCC---EEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940 38 QTGT---MIATASSKGTLIRVWDTLKKVQLVELR 68 (78)
Q Consensus 38 ~dg~---~l~s~~~d~~~i~i~d~~~~~~~~~~~ 68 (78)
.+|+ .++.++.+|. +.++|..+|+.+...+
T Consensus 309 ~~G~~~~~v~~~~~~G~-l~~lD~~tG~~l~~~~ 341 (668)
T 1kv9_A 309 IDGKPRKVLMQAPKNGF-FYVLDRTNGKLISAEK 341 (668)
T ss_dssp ETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEE
T ss_pred cCCcEEEEEEEECCCCE-EEEEECCCCCEecccc
Confidence 3665 6888999999 9999999999886554
No 278
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=57.80 E-value=21 Score=24.10 Aligned_cols=32 Identities=19% Similarity=0.070 Sum_probs=26.4
Q ss_pred CCCC---EEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940 38 QTGT---MIATASSKGTLIRVWDTLKKVQLVELRRG 70 (78)
Q Consensus 38 ~dg~---~l~s~~~d~~~i~i~d~~~~~~~~~~~~~ 70 (78)
.+|+ .++.++.+|. +.++|..+|+.+..++..
T Consensus 331 ~~G~~~~~v~~~~~~G~-l~~lD~~tG~~lw~~~~~ 365 (582)
T 1flg_A 331 KDGKIVKATAHADRNGF-FYVVDRSNGKLQNAFPFV 365 (582)
T ss_dssp SSSCEEEEEEEECTTSE-EEEEETTTCCEEEEEESS
T ss_pred CCCCEEEEEEEECCCce-EEEEECCCCCEecccccc
Confidence 4674 7888999999 999999999998776643
No 279
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=57.29 E-value=18 Score=22.67 Aligned_cols=37 Identities=11% Similarity=0.062 Sum_probs=24.8
Q ss_pred EecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCc
Q psy1940 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKV 62 (78)
Q Consensus 23 ~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~ 62 (78)
.+...-.....++|.|||+.+++ ..++. |.++| .++.
T Consensus 23 ~va~~l~~P~~ia~~pdG~l~V~-e~~g~-I~~~d-~~G~ 59 (354)
T 3a9g_A 23 EVASDLEVPWSIAPLGGGRYLVT-ERPGR-LVLIS-PSGK 59 (354)
T ss_dssp EEECSCSCEEEEEEEETTEEEEE-ETTTE-EEEEC-SSCE
T ss_pred EEeCCCCCCeEEEEcCCCeEEEE-eCCCE-EEEEe-CCCc
Confidence 33333345678999999985555 55688 88887 3454
No 280
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=55.78 E-value=15 Score=24.16 Aligned_cols=29 Identities=7% Similarity=0.116 Sum_probs=21.8
Q ss_pred CEEEEEECCCCC-EEEEEcCCCCEEEEeeCC
Q psy1940 30 ELACLALNQTGT-MIATASSKGTLIRVWDTL 59 (78)
Q Consensus 30 ~i~~v~fs~dg~-~l~s~~~d~~~i~i~d~~ 59 (78)
....++|.|||+ .|+.+...|. |++++..
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~-i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGY-VKILTPE 44 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTE-EEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCce-EEEEeCC
Confidence 447899999996 4555567888 9999753
No 281
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=54.39 E-value=48 Score=22.50 Aligned_cols=42 Identities=10% Similarity=0.159 Sum_probs=33.0
Q ss_pred EEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCC
Q psy1940 31 LACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP 73 (78)
Q Consensus 31 i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~ 73 (78)
--++..|+.-..++.-..-|. +.+||+.+|.++..-+-..++
T Consensus 261 Pvamqvs~kygviyviTK~G~-i~lyDleTgt~i~~nrIs~~~ 302 (494)
T 1bpo_A 261 PVAMQISEKHDVVFLITKYGY-IHLYDLETGTCIYMNRISGET 302 (494)
T ss_dssp EEEEEEETTTTEEEEEETTSE-EEEEETTTCCEEEEEECCSSC
T ss_pred eeEEEecccCCEEEEEecCce-EEEEecccceeeeeecccCCc
Confidence 345777777778888899999 999999999998776654444
No 282
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=53.93 E-value=65 Score=23.92 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=29.7
Q ss_pred ccCEEEEEECCC------CCEEEEEcC-CCCEEEEeeCCCCcEEEE
Q psy1940 28 QSELACLALNQT------GTMIATASS-KGTLIRVWDTLKKVQLVE 66 (78)
Q Consensus 28 ~~~i~~v~fs~d------g~~l~s~~~-d~~~i~i~d~~~~~~~~~ 66 (78)
..+|.|+++.|. +++++.|.. |++ ++|+++.+-+.+..
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~t-v~I~sL~~l~~~~~ 597 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDIS-ARILKLPSFELLHK 597 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTE-EEEEETTTCCEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCE-EEEEECCCCCeEEE
Confidence 457999999864 368888886 898 99999987665544
No 283
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=51.32 E-value=32 Score=23.08 Aligned_cols=29 Identities=14% Similarity=-0.075 Sum_probs=20.4
Q ss_pred cCEEEEEECCCCCEEEEEc-CCCCEEEEeeC
Q psy1940 29 SELACLALNQTGTMIATAS-SKGTLIRVWDT 58 (78)
Q Consensus 29 ~~i~~v~fs~dg~~l~s~~-~d~~~i~i~d~ 58 (78)
.....++|+|+|+.|+.+. ..+. |+.+|.
T Consensus 310 ~~p~~ia~~p~G~~lYvaD~~~h~-I~kid~ 339 (496)
T 3kya_A 310 SWEFQIFIHPTGKYAYFGVINNHY-FMRSDY 339 (496)
T ss_dssp SCCEEEEECTTSSEEEEEETTTTE-EEEEEE
T ss_pred CCceEEEEcCCCCEEEEEeCCCCE-EEEEec
Confidence 3457899999999655554 4555 888654
No 284
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=49.63 E-value=29 Score=23.24 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=26.0
Q ss_pred CEEEEEECC-CCCEEEEEcCC-CCEEEEeeCCCCcEEEEeeC
Q psy1940 30 ELACLALNQ-TGTMIATASSK-GTLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 30 ~i~~v~fs~-dg~~l~s~~~d-~~~i~i~d~~~~~~~~~~~~ 69 (78)
....++|+| ++..|+.+..+ +. |++.|...+........
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~-i~~ID~~~~~v~~l~~~ 180 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKA-IQLIDLKNRMLSSPLNI 180 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEE-EEEEETTTTEEEEEECC
T ss_pred CCCEEEEccCCCCEEEEEECCCCe-EEEEECCCCEEEEEEcc
Confidence 356899999 35555555544 56 99999887766554443
No 285
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=48.52 E-value=20 Score=19.35 Aligned_cols=17 Identities=12% Similarity=0.216 Sum_probs=15.5
Q ss_pred EEEeeCCCCcEEEEeeC
Q psy1940 53 IRVWDTLKKVQLVELRR 69 (78)
Q Consensus 53 i~i~d~~~~~~~~~~~~ 69 (78)
|+|.|..+|+.++.++.
T Consensus 71 VkVvD~~TgEVIRqIPp 87 (117)
T 2hc5_A 71 VKVIEDSTNEVIREIPP 87 (117)
T ss_dssp EEEEETTTTEEEEEECH
T ss_pred EEEEECCCCcEEEeCCh
Confidence 99999999999999874
No 286
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=48.01 E-value=38 Score=19.56 Aligned_cols=32 Identities=22% Similarity=0.122 Sum_probs=22.6
Q ss_pred cCEEEEEECCCCCEEEEE-cCCCCEEEEeeCCCC
Q psy1940 29 SELACLALNQTGTMIATA-SSKGTLIRVWDTLKK 61 (78)
Q Consensus 29 ~~i~~v~fs~dg~~l~s~-~~d~~~i~i~d~~~~ 61 (78)
.....++++|++..|+.+ ...+. |.++|....
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~-I~~~~~~g~ 111 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDR-IEVAKMDGT 111 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTE-EEEEETTSC
T ss_pred CCccEEEEEecCCeEEEEECCCCE-EEEEEcCCC
Confidence 456889999976656555 44566 888887643
No 287
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=44.39 E-value=42 Score=21.60 Aligned_cols=27 Identities=19% Similarity=0.009 Sum_probs=19.6
Q ss_pred EEEEECCCCCEEEEEc-CCCCEEEEeeCC
Q psy1940 32 ACLALNQTGTMIATAS-SKGTLIRVWDTL 59 (78)
Q Consensus 32 ~~v~fs~dg~~l~s~~-~d~~~i~i~d~~ 59 (78)
..++|+|+|+.|+.+. ..+. |+.+|..
T Consensus 276 ~~ia~dpdG~~LYvad~~~~~-I~~~~~d 303 (433)
T 4hw6_A 276 FHIVWHPTGDWAYIIYNGKHC-IYRVDYN 303 (433)
T ss_dssp EEEEECTTSSEEEEEETTTTE-EEEEEBC
T ss_pred ccEEEeCCCCEEEEEeCCCCE-EEEEeCC
Confidence 4699999999665554 4566 8887754
No 288
>1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10
Probab=42.74 E-value=24 Score=20.77 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=25.2
Q ss_pred CccCEEEEEECCCC-CEEEEEcCCCCEEEEeeCCCCcE
Q psy1940 27 HQSELACLALNQTG-TMIATASSKGTLIRVWDTLKKVQ 63 (78)
Q Consensus 27 h~~~i~~v~fs~dg-~~l~s~~~d~~~i~i~d~~~~~~ 63 (78)
+.+.+.++-|...+ ..+++...++. +.+||++-|+.
T Consensus 117 g~~hllsl~f~~g~aHaia~S~~g~~-~tlFDPN~GEF 153 (188)
T 1ukf_A 117 GRKHLLSLRFANVQGHAIACSCEGSQ-FKLFDPNLGEF 153 (188)
T ss_dssp TCEEEEEEEETTTEEEEEEEEEETTE-EEEEETTTEEE
T ss_pred CCceEEEEEecCCCceeEEeccCCCe-EEEeCCCCcee
Confidence 34456677777643 35666667787 99999987764
No 289
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=42.50 E-value=40 Score=22.94 Aligned_cols=30 Identities=10% Similarity=0.265 Sum_probs=25.2
Q ss_pred CCC---CEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940 38 QTG---TMIATASSKGTLIRVWDTLKKVQLVELR 68 (78)
Q Consensus 38 ~dg---~~l~s~~~d~~~i~i~d~~~~~~~~~~~ 68 (78)
.+| +.++.++.+|. +.++|.++|+.+...+
T Consensus 318 ~~G~~~~~v~~~~~~G~-l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 318 KDGKARKLLTHPDRNGI-VYTLDRTDGALVSANK 350 (599)
T ss_dssp TTSCEEEEEEEECTTSE-EEEEETTTCCEEEEEE
T ss_pred cCCcEEEEEEEECCCcE-EEEEECCCCCEeeccc
Confidence 467 56777899999 9999999999987765
No 290
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=41.44 E-value=25 Score=24.35 Aligned_cols=19 Identities=5% Similarity=0.163 Sum_probs=16.1
Q ss_pred ccCEEEEEECCCCCEEEEE
Q psy1940 28 QSELACLALNQTGTMIATA 46 (78)
Q Consensus 28 ~~~i~~v~fs~dg~~l~s~ 46 (78)
..+++.++|+||++.|+.+
T Consensus 530 ~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 530 GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp TCEEEEEEECTTSSEEEEE
T ss_pred CccccCCEECCCCCEEEEE
Confidence 3578999999999988765
No 291
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=40.69 E-value=83 Score=21.63 Aligned_cols=35 Identities=3% Similarity=0.182 Sum_probs=27.1
Q ss_pred ccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcE
Q psy1940 28 QSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQ 63 (78)
Q Consensus 28 ~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~ 63 (78)
.+.|.++...++|+.|..|+.++. +.++|..+++.
T Consensus 405 ~~~v~~i~~d~~g~~lWigt~~~G-l~~~d~~~~~~ 439 (795)
T 4a2l_A 405 SNNIKAVYVDEKKSLVYIGTHAGG-LSILHRNSGQV 439 (795)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTE-EEEEETTTCCE
T ss_pred CccEEEEEEcCCCCEEEEEeCcCc-eeEEeCCCCcE
Confidence 356889988888885667777777 89999887654
No 292
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=40.23 E-value=44 Score=22.38 Aligned_cols=31 Identities=10% Similarity=0.194 Sum_probs=25.0
Q ss_pred CCCC---EEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940 38 QTGT---MIATASSKGTLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 38 ~dg~---~l~s~~~d~~~i~i~d~~~~~~~~~~~~ 69 (78)
.+|+ .++.++.+|. +.++|..+|+.+...+-
T Consensus 311 ~~G~~~~~v~~~~~~G~-l~~lD~~tG~~~w~~~~ 344 (571)
T 2ad6_A 311 VNGKMTPLLSHIDRNGI-LYTLNRENGNLIVAEKV 344 (571)
T ss_dssp ETTEEEEEEEEECTTSE-EEEEETTTCCEEEEEES
T ss_pred cCCcEEEEEEEeCCCcE-EEEEECCCCCEEeeecc
Confidence 4674 5778889999 99999999998877653
No 293
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=38.49 E-value=81 Score=20.53 Aligned_cols=24 Identities=8% Similarity=0.224 Sum_probs=17.7
Q ss_pred ccCEEEEEECCCCC-EEEEEcCCCC
Q psy1940 28 QSELACLALNQTGT-MIATASSKGT 51 (78)
Q Consensus 28 ~~~i~~v~fs~dg~-~l~s~~~d~~ 51 (78)
...+..|++.|||. .+++-+..|.
T Consensus 404 ~~R~~dv~~gpDG~~Lyv~~d~~G~ 428 (454)
T 1cru_A 404 NNRYRDVIASPDGNVLYVLTDTAGN 428 (454)
T ss_dssp SSCEEEEEECTTSSCEEEEECSSCC
T ss_pred CCCceeEEECCCCCEEEEEECCCCC
Confidence 35888999999997 6665555555
No 294
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=37.67 E-value=35 Score=22.82 Aligned_cols=27 Identities=11% Similarity=0.302 Sum_probs=23.5
Q ss_pred ccCEEEEEECCCCCEEEEEcCCCCEEEE
Q psy1940 28 QSELACLALNQTGTMIATASSKGTLIRV 55 (78)
Q Consensus 28 ~~~i~~v~fs~dg~~l~s~~~d~~~i~i 55 (78)
..+|..+.|+++..+|+.++.++. ++|
T Consensus 461 ~~pI~~m~l~~~~~~Lyv~s~~~V-~~v 487 (495)
T 1q47_A 461 PTTISAMELSTKQQQLYIGSTAGV-AQL 487 (495)
T ss_dssp CCCCCEEEEETTTTEEEEEBSSCE-EEE
T ss_pred CCccceEEEcCCCCEEEEEECCeE-EEE
Confidence 468899999999999999999886 666
No 295
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=35.12 E-value=48 Score=20.21 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=20.4
Q ss_pred cCEEEEEECCCCCEEEEEcCCCCEEEEeeCCC
Q psy1940 29 SELACLALNQTGTMIATASSKGTLIRVWDTLK 60 (78)
Q Consensus 29 ~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~ 60 (78)
..+..++|+|+|...+. .++. +.-.+..+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~-Ly~~~~~t 69 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDK-IYKGTPPT 69 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTE-EEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCe-EEEECCCC
Confidence 46779999999985555 5666 66666544
No 296
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=32.52 E-value=59 Score=20.59 Aligned_cols=28 Identities=11% Similarity=0.185 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940 41 TMIATASSKGTLIRVWDTLKKVQLVELRR 69 (78)
Q Consensus 41 ~~l~s~~~d~~~i~i~d~~~~~~~~~~~~ 69 (78)
..++.++.||. +.-.|..+|+.+-.++.
T Consensus 11 ~~V~v~t~dG~-l~Ald~~tG~~~W~~~~ 38 (339)
T 2be1_A 11 DILIAADVEGG-LHAVDRRNGHIIWSIEP 38 (339)
T ss_dssp EEEEEEETTSC-EEEEETTTTEEEEEECG
T ss_pred CEEEEEeCCCe-EEEEECCCCcEEEEecC
Confidence 35667777887 77778777777766654
No 297
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=32.42 E-value=73 Score=18.20 Aligned_cols=30 Identities=3% Similarity=0.015 Sum_probs=21.6
Q ss_pred EEEEEECCCCCEEEEEcCCCCEEEEeeCCCC
Q psy1940 31 LACLALNQTGTMIATASSKGTLIRVWDTLKK 61 (78)
Q Consensus 31 i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~ 61 (78)
+--+.|+|+|.+.+.+.+.|. ..=.|+..+
T Consensus 112 lEp~eF~p~~~w~a~~~esG~-f~dvDLse~ 141 (164)
T 1zso_A 112 IELIDFFPSNNFIVEDTKGKL-YYDVNLSDQ 141 (164)
T ss_dssp EEEEEECCCSCEEEEETTSCE-EEEECCTTS
T ss_pred eeeEEEecCCcEEEEECCCCc-EEeeecCCC
Confidence 345789999999998876665 654566554
No 298
>2jra_A Protein RPA2121; domain-swapped dimer, structural genomics, PSI, protein STRU initiative, northeast structural genomics consortium; NMR {Rhodopseudomonas palustris}
Probab=31.50 E-value=50 Score=16.09 Aligned_cols=20 Identities=30% Similarity=0.346 Sum_probs=16.7
Q ss_pred CCccCEEEEEECCCCCEEEE
Q psy1940 26 AHQSELACLALNQTGTMIAT 45 (78)
Q Consensus 26 ~h~~~i~~v~fs~dg~~l~s 45 (78)
.|.+.++.+.....|+++.+
T Consensus 47 ~H~G~~Y~LR~Tr~GKLILT 66 (67)
T 2jra_A 47 AHGDDRYRLRLTSQNKLILT 66 (67)
T ss_dssp EETTEEEEEEECTTSCEEEE
T ss_pred EeCCeEEEeEEccCCceeec
Confidence 48888899999989988875
No 299
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=31.14 E-value=53 Score=22.96 Aligned_cols=28 Identities=11% Similarity=0.296 Sum_probs=23.8
Q ss_pred CccCEEEEEECCCCCEEEEEcCCCCEEEE
Q psy1940 27 HQSELACLALNQTGTMIATASSKGTLIRV 55 (78)
Q Consensus 27 h~~~i~~v~fs~dg~~l~s~~~d~~~i~i 55 (78)
...+|..+.++++..+|+.++.++. +++
T Consensus 468 ~~~pI~~L~ld~~~~~LYV~t~~~V-~kV 495 (667)
T 4gz8_A 468 EPTTISAMELSTKQQQLYIGSTAGV-AQL 495 (667)
T ss_dssp SCCCCCEEEEETTTTEEEEEBSSCE-EEE
T ss_pred CCceeeeEEEcCCCCEEEEEECCEE-EEE
Confidence 4557888999999999999999986 776
No 300
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=28.00 E-value=1e+02 Score=18.63 Aligned_cols=31 Identities=16% Similarity=0.302 Sum_probs=20.4
Q ss_pred CCccCEEEEEECCCCCEEEEEcCCCCEEEEee
Q psy1940 26 AHQSELACLALNQTGTMIATASSKGTLIRVWD 57 (78)
Q Consensus 26 ~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d 57 (78)
.+...+..+++.|++..++.+..... .+-.|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~~G~~-~~S~d 190 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVSSRGSF-YSTWE 190 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEETTSSE-EEEEC
T ss_pred CCCcceEEEEEcCCCcEEEEECCCcE-EEEeC
Confidence 34557889999999988876644333 33344
No 301
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=26.78 E-value=62 Score=22.25 Aligned_cols=19 Identities=5% Similarity=0.163 Sum_probs=16.2
Q ss_pred ccCEEEEEECCCCCEEEEE
Q psy1940 28 QSELACLALNQTGTMIATA 46 (78)
Q Consensus 28 ~~~i~~v~fs~dg~~l~s~ 46 (78)
..++..+.|+||++.|...
T Consensus 530 gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 530 GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp TCEEEEEEECTTSSEEEEE
T ss_pred CccCcCeeECCCCCEEEEE
Confidence 5689999999999988765
No 302
>3rd7_A Acyl-COA thioesterase; seattle structur genomics center for infectious disease, ssgcid, hydrolase; 1.95A {Mycobacterium avium}
Probab=25.87 E-value=16 Score=22.45 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=18.1
Q ss_pred EEEEEECCCCCEEEEEcCCCCEEEE
Q psy1940 31 LACLALNQTGTMIATASSKGTLIRV 55 (78)
Q Consensus 31 i~~v~fs~dg~~l~s~~~d~~~i~i 55 (78)
...--|+++|+++|++.-++. +|.
T Consensus 260 ~~g~i~~~~G~LVAs~~Qegl-~R~ 283 (286)
T 3rd7_A 260 ATGTLYNRSGELVCIATQEGY-FAE 283 (286)
T ss_dssp EEEEEEETTSCEEEEEEEEEE-ECC
T ss_pred EEEEEECCCCCEEEEEEehhe-eec
Confidence 445568999999999887775 553
No 303
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=25.67 E-value=1.7e+02 Score=20.22 Aligned_cols=30 Identities=13% Similarity=-0.058 Sum_probs=21.2
Q ss_pred CEEEEEECCCCCEEEEE-cCCCCEEEEeeCCC
Q psy1940 30 ELACLALNQTGTMIATA-SSKGTLIRVWDTLK 60 (78)
Q Consensus 30 ~i~~v~fs~dg~~l~s~-~~d~~~i~i~d~~~ 60 (78)
..+.|+|+|++..|+.+ +..+. |..+|+..
T Consensus 541 ~PnGlavd~~~~~LY~aD~~~~~-I~~~d~dG 571 (699)
T 1n7d_A 541 WPNGITLDLLSGRLYWVDSKLHS-ISSIDVNG 571 (699)
T ss_dssp SCCCEEECTTTCCEEEEETTTTE-EEEECSSS
T ss_pred CccEEEEeccCCEEEEEecCCCe-EEEEccCC
Confidence 34689999986655554 45566 99999864
No 304
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=25.45 E-value=53 Score=17.75 Aligned_cols=13 Identities=8% Similarity=0.238 Sum_probs=9.9
Q ss_pred EEEECCCCCEEEE
Q psy1940 33 CLALNQTGTMIAT 45 (78)
Q Consensus 33 ~v~fs~dg~~l~s 45 (78)
.|.|+++|+.++.
T Consensus 36 iI~W~~~G~sFvV 48 (125)
T 2ldu_A 36 LICWSPSGNSFHV 48 (125)
T ss_dssp TEEECTTSSEEEE
T ss_pred EEEEcCCCCEEEE
Confidence 4889999986654
No 305
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=25.39 E-value=1.7e+02 Score=20.17 Aligned_cols=39 Identities=10% Similarity=0.109 Sum_probs=28.6
Q ss_pred CEEEEEECC-CCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCC
Q psy1940 30 ELACLALNQ-TGTMIATASSKGTLIRVWDTLKKVQLVELRRGS 71 (78)
Q Consensus 30 ~i~~v~fs~-dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~ 71 (78)
.|++|.+.+ ++++|+++..- . |...|- +|+.+-.+-+..
T Consensus 356 HiNsv~~d~~dd~~liSsR~~-~-I~~Id~-tG~V~W~LGg~~ 395 (571)
T 3elq_A 356 HVNSIAYDAKDDSIILSSRHQ-G-VVKIGR-DKQVKWILAPSK 395 (571)
T ss_dssp CEEEEEEETTTTEEEEEETTT-E-EEEEET-TSCEEEEESCST
T ss_pred EecceeEcCCCCEEEEECCcc-E-EEEEcC-CCcEEEEECCCC
Confidence 489999988 55788887777 6 655584 888888776543
No 306
>2loj_A Putative cytoplasmic protein; pathogenic bacterial protein, PSI-biology, northeast structu genomics consortium (NESG); NMR {Salmonella enterica subsp}
Probab=25.27 E-value=43 Score=16.13 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=15.6
Q ss_pred CCccCEEEEEECCCCCEEEE
Q psy1940 26 AHQSELACLALNQTGTMIAT 45 (78)
Q Consensus 26 ~h~~~i~~v~fs~dg~~l~s 45 (78)
.|.+.++.+.....|+++.+
T Consensus 43 ~H~G~~Y~LR~Tr~GKLILT 62 (63)
T 2loj_A 43 DHNGQEYLLRKTQAGKLLLT 62 (63)
T ss_dssp EETTEEEEEEEETTTEEEEE
T ss_pred EeCCeEEEeEEccCCceeec
Confidence 47788888888888887765
No 307
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=25.02 E-value=11 Score=25.38 Aligned_cols=21 Identities=33% Similarity=0.590 Sum_probs=13.4
Q ss_pred EEcCCCCEEEEeeCCCCcEEEE
Q psy1940 45 TASSKGTLIRVWDTLKKVQLVE 66 (78)
Q Consensus 45 s~~~d~~~i~i~d~~~~~~~~~ 66 (78)
.+..+|. |||||+++.+.+.+
T Consensus 162 ~~~~~GV-VrvWDVkd~slLnN 182 (577)
T 3mwp_A 162 RAGRDGV-VRVWDVKNAELLNN 182 (577)
T ss_dssp ----CCE-ECSEECSCGGGGTT
T ss_pred CCCCCCe-EEEEecCCHHHHhh
Confidence 5677888 99999998765433
No 308
>4sgb_I Potato inhibitor, PCI-1; complex(serine proteinase-inhibitor); 2.10A {Streptomyces griseus} SCOP: g.69.1.1 PDB: 2jzm_A 1tih_A 1qh2_B
Probab=23.98 E-value=50 Score=15.10 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=11.7
Q ss_pred EECCCCCEEEEEcCCC
Q psy1940 35 ALNQTGTMIATASSKG 50 (78)
Q Consensus 35 ~fs~dg~~l~s~~~d~ 50 (78)
=|+.+|+++-.|..|-
T Consensus 15 Yf~~~GtfiCeGesdp 30 (51)
T 4sgb_I 15 YYSANGAFICEGQSDP 30 (51)
T ss_dssp EECTTCCEEEECCBCT
T ss_pred eecCCCCEEeccccCC
Confidence 4788998887766553
No 309
>3u0a_A Acyl-COA thioesterase II TESB2; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, hydrolase; 2.50A {Mycobacterium marinum}
Probab=23.86 E-value=25 Score=21.53 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=20.2
Q ss_pred CEEEEEECCCCCEEEEEcCCCCEEEEe
Q psy1940 30 ELACLALNQTGTMIATASSKGTLIRVW 56 (78)
Q Consensus 30 ~i~~v~fs~dg~~l~s~~~d~~~i~i~ 56 (78)
-...--|+++|++++++...+. ||.-
T Consensus 252 l~~g~i~~~~G~LVAs~~Qegl-vR~~ 277 (285)
T 3u0a_A 252 LTHGKIFTQGGELVAAVMQEGL-TRYP 277 (285)
T ss_dssp EEEEEEEETTCCEEEEEEEEEE-EECC
T ss_pred EEEEEEECCCCCEEEEEEeeEE-EEec
Confidence 3445578999999999988887 7764
No 310
>2oqj_C Peptide 2G12.1 (ACPPSHVLDMRSGTCLAAEGK); immunoglobulin fold, immune system; 2.80A {Homo sapiens}
Probab=22.39 E-value=47 Score=12.64 Aligned_cols=13 Identities=23% Similarity=0.153 Sum_probs=9.0
Q ss_pred EEeeCCCCcEEEE
Q psy1940 54 RVWDTLKKVQLVE 66 (78)
Q Consensus 54 ~i~d~~~~~~~~~ 66 (78)
.+.|+++|.++..
T Consensus 6 hvldmrsgtclaa 18 (26)
T 2oqj_C 6 HVLDMRSGTCLAA 18 (26)
T ss_pred heeeccCCceEee
Confidence 4668888877643
No 311
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=20.91 E-value=1.6e+02 Score=18.34 Aligned_cols=39 Identities=8% Similarity=0.004 Sum_probs=25.4
Q ss_pred ccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940 28 QSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68 (78)
Q Consensus 28 ~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~ 68 (78)
......+++ ..+..+++-...+. |..+|..+|+.+..+.
T Consensus 288 ~~~P~giav-~~~~ly~td~~~~~-V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 288 LPHPFAITV-FEDSLYWTDWHTKS-INSANKFTGKNQEIIR 326 (386)
T ss_dssp CSSEEEEEE-ETTEEEEEETTTTE-EEEEETTTCCSCEEEE
T ss_pred CCCceEEEE-ECCEEEEeeCCCCe-EEEEECCCCcceEEEc
Confidence 344567777 34556666666777 8888876776555554
No 312
>3d8d_A Amyloid beta A4 precursor protein-binding family 1; alpha-beta structure, phosphotyrosine binding domain; 2.20A {Homo sapiens} PDB: 3d8e_A 3d8f_A
Probab=20.71 E-value=1.3e+02 Score=16.99 Aligned_cols=28 Identities=11% Similarity=0.117 Sum_probs=18.7
Q ss_pred CCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940 40 GTMIATASSKGTLIRVWDTLKKVQLVELR 68 (78)
Q Consensus 40 g~~l~s~~~d~~~i~i~d~~~~~~~~~~~ 68 (78)
|+-+.---.+++ +++.|..+...+..++
T Consensus 54 gq~~~L~v~~~t-lrLvD~~tk~~L~~~p 81 (148)
T 3d8d_A 54 GKDLLLQLEDET-LKLVEPQSQALLHAQP 81 (148)
T ss_dssp TCEEEEEEETTE-EEEECTTTCCEEEEEE
T ss_pred CceEEEEEcCCe-EEEecCCCCceEEEee
Confidence 444444455666 8999888877776665
Done!