RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1940
(78 letters)
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A
{Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Length = 355
Score = 80.8 bits (199), Expect = 3e-20
Identities = 25/71 (35%), Positives = 37/71 (52%)
Query: 7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVE 66
+QD + + V I AH + + + LN+ M+AT S GT+IRV+ T V + E
Sbjct: 174 TQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVRE 233
Query: 67 LRRGSDPATLY 77
RRG D A +
Sbjct: 234 FRRGLDRADVV 244
Score = 35.0 bits (80), Expect = 9e-04
Identities = 5/47 (10%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 12 STELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
+ + + V N + + NQ + + ++ K +++
Sbjct: 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS--FEIYNV 47
Score = 30.4 bits (68), Expect = 0.035
Identities = 6/32 (18%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 26 AHQSELACLALNQTGTMIATASSKGTLIRVWD 57
++++ + + G+ +A S K T + V++
Sbjct: 238 LDRADVVDMKWSTDGSKLAVVSDKWT-LHVFE 268
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor,
phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila
melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A*
3gfc_A 3cfs_B 3cfv_B
Length = 430
Score = 36.6 bits (85), Expect = 2e-04
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
Query: 16 SSSSSPVTINAHQSELACLALN-QTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP- 73
++S T++AH +E+ CL+ N + ++AT S+ T + +WD LR
Sbjct: 265 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT-VALWD---------LRNLKLKL 314
Query: 74 ATLYW 78
+
Sbjct: 315 HSFES 319
Score = 29.7 bits (67), Expect = 0.061
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 7 SQDLSSTELSSSSSPV-TINAHQSELACLALNQTGT-MIATASSKGTLIRVWDT 58
++ S E S P + HQ E L+ N + +AS T I +WD
Sbjct: 159 TKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT-ICLWDI 211
Score = 24.7 bits (54), Expect = 3.2
Identities = 7/42 (16%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 19 SSPV-TINAHQSELACLALNQTG-TMIATASSKGTLIRVWDT 58
+ + +H+ E+ + + T++A++ + + VWD
Sbjct: 311 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDL 351
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller,
3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core
complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A*
2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A
3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A
2h13_A 3p4f_A 4a7j_A* 2h9l_A ...
Length = 312
Score = 35.9 bits (84), Expect = 4e-04
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPA 74
T+ AH ++ + N+ G++I ++S G R+WDT L L +P
Sbjct: 144 TLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDDDNPP 194
Score = 30.1 bits (69), Expect = 0.035
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
T+ H + + C N +I + S + +R+WD
Sbjct: 102 TLKGHSNYVFCCNFNPQSNLIVSGSFDES-VRIWDV 136
Score = 30.1 bits (69), Expect = 0.042
Identities = 9/36 (25%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
TI+ H+ ++ +A + ++ +AS T +++WD
Sbjct: 60 TISGHKLGISDVAWSSDSNLLVSASDDKT-LKIWDV 94
Score = 29.7 bits (68), Expect = 0.049
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 23 TINAHQSELACLALNQTGTMIATASSK--GTLIRVWDT 58
+ H + A + T +IA+A+ + T I++W +
Sbjct: 274 KLQGHTDVVISTACHPTENIIASAALENDKT-IKLWKS 310
Score = 28.6 bits (65), Expect = 0.14
Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 11/52 (21%)
Query: 17 SSSSPVTINAHQSELACL----------ALNQTGTMIATASSKGTLIRVWDT 58
+ S P + + + L + G +A++S+ I++W
Sbjct: 2 TQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKL-IKIWGA 52
Score = 27.4 bits (62), Expect = 0.38
Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 27 HQSELACLALNQTGTMIATASSKGTLIRVWDT 58
++ + + G I A+ T +++WD
Sbjct: 191 DNPPVSFVKFSPNGKYILAATLDNT-LKLWDY 221
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 35.6 bits (82), Expect = 6e-04
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATL 76
+ H + C A + G ++AT G IR+W+ L S
Sbjct: 1122 ELKGHNGCVRCSAFSLDGILLATGDDNGE-IRIWNVSDGQLLHSCAPISVEEGT 1174
Score = 34.8 bits (80), Expect = 0.001
Identities = 5/46 (10%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68
+++++C L+ +A G I++ +
Sbjct: 956 IDYLPEAQVSCCCLSPHLEYVAFGDEDGA-IKIIELPNNRVFSSGV 1000
Score = 34.0 bits (78), Expect = 0.002
Identities = 9/49 (18%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68
S + + H + +Q G IA+ + T ++V+ +L++++
Sbjct: 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKT-LQVFKAETGEKLLDIK 654
Score = 33.6 bits (77), Expect = 0.002
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
I AH+ E+ C A + + IAT S+ +++WD+
Sbjct: 652 DIKAHEDEVLCCAFSSDDSYIATCSADKK-VKIWDS 686
Score = 33.6 bits (77), Expect = 0.002
Identities = 5/38 (13%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLK 60
T + + L + ++ T + G + + L+
Sbjct: 1213 TFYTNGTNLKKIHVSPDFRTYVTVDNLGI-LYILQVLE 1249
Score = 33.6 bits (77), Expect = 0.003
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68
HQ + A++ T ++ S+ T ++W L EL+
Sbjct: 1080 DFTCHQGTVLSCAISSDATKFSSTSADKT-AKIWSFDLLSPLHELK 1124
Score = 32.9 bits (75), Expect = 0.005
Identities = 6/51 (11%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP 73
H S + + + A S+ + +W+ ++++ + R
Sbjct: 835 IHTGHHSTIQYCDFSPYDHLAVIALSQYC-VELWNIDSRLKVADCRGHLSW 884
Score = 31.7 bits (72), Expect = 0.012
Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
+ H+ + + G + ++S I+VW+
Sbjct: 998 SGVGHKKAVRHIQFTADGKTLISSSEDSV-IQVWNW 1032
Score = 31.0 bits (70), Expect = 0.023
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSD 72
H S + + + G+ TAS T IRVW+T K + + +
Sbjct: 877 DCRGHLSWVHGVMFSPDGSSFLTASDDQT-IRVWETKKVCKNSAIVLKQE 925
Score = 31.0 bits (70), Expect = 0.023
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
T+ H + + + ++A+ S+ GT +R+WD
Sbjct: 738 TMFGHTNSVNHCRFSPDDELLASCSADGT-LRLWDV 772
Score = 28.6 bits (64), Expect = 0.18
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 16 SSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG 70
SS + + C + + G I A+ ++D L E+ G
Sbjct: 786 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKV--LLFDIHTSGLLAEIHTG 838
Score = 28.3 bits (63), Expect = 0.22
Identities = 5/59 (8%), Positives = 14/59 (23%), Gaps = 3/59 (5%)
Query: 15 LSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP 73
+ S H + + + + +A G ++ W+
Sbjct: 1165 CAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GY-LKWWNVATGDSSQTFYTNGTN 1220
Score = 27.1 bits (60), Expect = 0.49
Identities = 2/32 (6%), Positives = 10/32 (31%), Gaps = 1/32 (3%)
Query: 27 HQSELACLALNQTGTMIATASSKGTLIRVWDT 58
+ + + TM+ + +++
Sbjct: 921 VLKQEIDVVFQENETMVLAVDNIRG-LQLIAG 951
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit;
lissencephaly, platelet activacting factor, regulator of
cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Length = 410
Score = 34.9 bits (81), Expect = 8e-04
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
T+NAH+ + L ++T + T S T ++VW+
Sbjct: 375 TLNAHEHFVTSLDFHKTAPYVVTGSVDQT-VKVWEC 409
Score = 33.7 bits (78), Expect = 0.002
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68
T H+ + + NQ GT+IA+ S+ T +RVW K ELR
Sbjct: 229 TFTGHREWVRMVRPNQDGTLIASCSNDQT-VRVWVVATKECKAELR 273
Score = 31.8 bits (73), Expect = 0.010
Identities = 9/36 (25%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
T+ H + ++ + +G ++A+ S+ T I++WD
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMT-IKLWDF 179
Score = 29.9 bits (68), Expect = 0.049
Identities = 9/36 (25%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
T++ H ++ +++ G I +AS T I++W+
Sbjct: 187 TMHGHDHNVSSVSIMPNGDHIVSASRDKT-IKMWEV 221
Score = 29.1 bits (66), Expect = 0.11
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
T+ H + + + + G I + + T +RVWD
Sbjct: 333 TLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDY 367
Score = 28.3 bits (64), Expect = 0.19
Identities = 9/36 (25%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
++ H+S + + + +++ +AS T I+VWD
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDAT-IKVWDY 137
Score = 27.9 bits (63), Expect = 0.25
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 17 SSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
+ S + + + + G + + S T I++WD
Sbjct: 285 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDV 325
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone,
RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Length = 420
Score = 34.9 bits (81), Expect = 8e-04
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Query: 11 SSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG 70
+S L + S+ L G + G I V + K Q ++L
Sbjct: 230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV-ITVHNVFSKEQTIQLPSK 288
Score = 31.1 bits (71), Expect = 0.018
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
T+ H++ + +A+ G + +AS GT IR+W+
Sbjct: 176 TLIGHRATVTDIAIIDRGRNVLSASLDGT-IRLWEC 210
Score = 29.5 bits (67), Expect = 0.061
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
AH SE+ L +G + ++S +++W
Sbjct: 134 IDQAHVSEITKLKFFPSGEALISSSQDMQ-LKIWSV 168
Score = 28.7 bits (65), Expect = 0.12
Identities = 5/32 (15%), Positives = 10/32 (31%), Gaps = 1/32 (3%)
Query: 27 HQSELACLALNQTGTMIATASSKGTLIRVWDT 58
A +++G I+V D+
Sbjct: 96 RADYTAVDTAKLQMRRFILGTTEGD-IKVLDS 126
Score = 27.6 bits (62), Expect = 0.30
Identities = 5/46 (10%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 27 HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSD 72
+ G+ + A G +++T+ + ++ + +D
Sbjct: 55 GVDAGKGNTFEKVGSHLYKARLDGH-DFLFNTIIR-DGSKMLKRAD 98
Score = 26.8 bits (60), Expect = 0.64
Identities = 4/37 (10%), Positives = 10/37 (27%), Gaps = 1/37 (2%)
Query: 40 GTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATL 76
G + ++ + I++ P L
Sbjct: 346 GALFVSSGFDTS-IKLDIISDPESERPAIEFETPTFL 381
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF,
cofilin, structural genomics, PSI, protein structure
initiative; 1.70A {Caenorhabditis elegans} SCOP:
b.69.4.1 b.69.4.1 PDB: 1pev_A
Length = 611
Score = 34.9 bits (81), Expect = 0.001
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG 70
H + L+ + G + +A ++G I WD +
Sbjct: 319 VRYGHNKAITALSSSADGKTLFSADAEGH-INSWDISTGISNRVFPDV 365
Score = 32.9 bits (76), Expect = 0.004
Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 5/61 (8%)
Query: 9 DLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68
LS +S V H +E+ +A + G + + + +L
Sbjct: 476 KLSGASVSE----VKTIVHPAEITSVAFSNNGAFLVATDQSRK-VIPYSVANNFELAHTN 530
Query: 69 R 69
Sbjct: 531 S 531
Score = 31.8 bits (73), Expect = 0.011
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75
T H + + N G++ A+ GT I +++ + + S
Sbjct: 185 TFGEHTKFVHSVRYNPDGSLFASTGGDGT-IVLYNGVDGTKTGVFEDDSLKNV 236
Score = 31.8 bits (73), Expect = 0.013
Identities = 10/49 (20%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGS 71
+ H +++AC++ + +AT S + + VW+ K + +G+
Sbjct: 531 SWTFHTAKVACVSWSPDNVRLATGSLDNS-VIVWNMNKPSDHPIIIKGA 578
Score = 31.0 bits (71), Expect = 0.023
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 18 SSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSD 72
+ AH + L + GT IA+AS+ T I++W+ + G+
Sbjct: 229 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVATLKVEKTIPVGTR 282
Score = 30.6 bits (70), Expect = 0.028
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLV 65
H + + +G A+ G +R+WDT + ++
Sbjct: 54 IYTEHSHQTTVAKTSPSGYYCASGDVHGN-VRIWDTTQTTHIL 95
Score = 29.5 bits (67), Expect = 0.080
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 27 HQSELACLALNQTGTMIATASSKGTLIRVWDT 58
+ E L + T + + S+ G I +
Sbjct: 281 TRIEDQQLGIIWTKQALVSISANGF-INFVNP 311
Score = 27.5 bits (62), Expect = 0.33
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWD 57
AH + T I +A I+ W+
Sbjct: 575 IKGAHAMSSVNSVIWLNETTIVSAGQDSN-IKFWN 608
Score = 27.5 bits (62), Expect = 0.34
Identities = 3/37 (8%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 23 TINAHQSELACLALNQTGTM-IATASSKGTLIRVWDT 58
+ + + + I + S T + +++
Sbjct: 142 NLTGQARAMNSVDFKPSRPFRIISGSDDNT-VAIFEG 177
Score = 27.5 bits (62), Expect = 0.35
Identities = 5/26 (19%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 33 CLALNQTGTMIATASSKGTLIRVWDT 58
C+AL+ +A + V+
Sbjct: 453 CVALSNDKQFVAVGGQDSK-VHVYKL 477
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural
protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Length = 402
Score = 34.3 bits (79), Expect = 0.001
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSD 72
+ H + + ++ G +I T+ +RV + K + E R +
Sbjct: 171 GPDVHPDTIYSVDWSRDGALICTSCRDKR-VRVIEPRKGTVVAEKDRPHE 219
Score = 23.9 bits (52), Expect = 7.0
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 22 VTINAHQSELACLALNQTG-TMIATASSKGTLIRVWDTLKKVQLVELR 68
+T+ H + +A + T ++ +A I VWD ++ L
Sbjct: 125 ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV-ILVWDVGTGAAVLTLG 171
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription,
hypothetica protein, preinitiation complex, yeast RNA
polymerase III; 3.2A {Saccharomyces cerevisiae}
Length = 524
Score = 33.7 bits (76), Expect = 0.003
Identities = 4/62 (6%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 15 LSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPA 74
++ + + + ++ + + +++ M+ S+ G+ + + + +++ +
Sbjct: 384 SRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGS-LIITNAARRLLHGIKNSSATQK 442
Query: 75 TL 76
+L
Sbjct: 443 SL 444
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller;
3.30A {Saccharomyces cerevisiae}
Length = 416
Score = 33.5 bits (77), Expect = 0.003
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 20 SPVTINAHQSELACLALN-QTGTMIATASSKGTLIRVWDTLKKVQLVELRRGS 71
+P + E+ LA N + A+A S +WD K +++ L S
Sbjct: 157 TPGQSMSSVDEVISLAWNQSLAHVFASAGSSNF-ASIWDLKAKKEVIHLSYTS 208
Score = 31.5 bits (72), Expect = 0.014
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 23 TINAHQSELACLALN-QTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATL 76
+ H S + + N + ++A+ + G I +WD K + P
Sbjct: 108 RFSNHSSSVKTVKFNAKQDNVLASGGNNGE-IFIWDMNKCTESPSNYTPLTPGQS 161
Score = 25.8 bits (57), Expect = 1.7
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 14 ELSSSSSPVTINAHQSELA--CLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR 69
L ++ S I + Q + L + +IA A G+ + ++ T + +
Sbjct: 51 SLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGS-LELYSTNEANNAINSMA 107
Score = 24.2 bits (53), Expect = 4.7
Identities = 5/19 (26%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 40 GTMIATASSKGTLIRVWDT 58
GT+ A S+ + + +W
Sbjct: 35 GTVDANFSTDSS-LELWSL 52
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta
transducin repeat all beta, signaling protein; 1.10A
{Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A
2i3s_A 2i3t_A
Length = 342
Score = 33.3 bits (76), Expect = 0.004
Identities = 6/40 (15%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 33 CLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSD 72
+ + + TA S G I W+ + ++ + ++
Sbjct: 256 SIEFSPRHKFLYTAGSDGI-ISCWNLQTRKKIKNFAKFNE 294
Score = 26.7 bits (59), Expect = 0.63
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 27 HQSELACLA-LNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP 73
++ L C ++ T I + +G I D + L
Sbjct: 55 YKHPLLCCNFIDNTDLQIYVGTVQGE-ILKVDLIGSPSFQALTNNEAN 101
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A
{Saccharomyces cerevisiae}
Length = 369
Score = 32.6 bits (75), Expect = 0.006
Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
+I+ H+ ++ + + T T+S + D
Sbjct: 213 SIDLHEKSISDMQFSPDLTYFITSSRDTN-SFLVDV 247
Score = 32.6 bits (75), Expect = 0.006
Identities = 7/36 (19%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
T++ H + + ++ T S+ + I++WD
Sbjct: 69 TLDGHTGTIWSIDVDCFTKYCVTGSADYS-IKLWDV 103
Score = 29.9 bits (68), Expect = 0.052
Identities = 7/38 (18%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
+ + H+ L + N+ G ++ + S + VW +
Sbjct: 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSS-ASVWYS 61
Score = 29.5 bits (67), Expect = 0.072
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
+ H L +A++ GT A+ G IR+
Sbjct: 310 RVQGHFGPLNTVAISPQGTSYASGGEDGF-IRLHHF 344
>3ow8_A WD repeat-containing protein 61; structural genomics consortium,
SGC, transcriptio; 2.30A {Homo sapiens}
Length = 321
Score = 32.4 bits (75), Expect = 0.006
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
+I+A + LA + +AT + G + ++
Sbjct: 117 SIDAGPVDAWTLAFSPDSQYLATGTHVGK-VNIFGV 151
Score = 32.4 bits (75), Expect = 0.007
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP 73
++ HQ + + ++ T + A++S IR+WD Q+ + G
Sbjct: 75 SLEGHQLGVVSVDISHTLPIAASSSLDAH-IRLWDLENGKQIKSIDAGPVD 124
Score = 30.5 bits (70), Expect = 0.031
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
T+ H + L + ++ TAS G I+++D
Sbjct: 201 TLEGHAMPIRSLTFSPDSQLLVTASDDGY-IKIYDV 235
Score = 29.7 bits (68), Expect = 0.059
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWD 57
T HQ ++ + N G+ I + I ++D
Sbjct: 285 TFFDHQDQVWGVKYNGNGSKIVSVGDDQE-IHIYD 318
Score = 29.0 bits (66), Expect = 0.090
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
T++ H S + +A T ++SS + ++VWD
Sbjct: 243 TLSGHASWVLNVAFCPDDTHFVSSSSDKS-VKVWDV 277
Score = 29.0 bits (66), Expect = 0.11
Identities = 6/36 (16%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
+++ + +A + G +A+ + G I ++D
Sbjct: 159 SLDTRGKFILSIAYSPDGKYLASGAIDGI-INIFDI 193
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A
{Homo sapiens}
Length = 368
Score = 32.2 bits (74), Expect = 0.007
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 33 CLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP 73
+A + +AT S G WD + +L + P
Sbjct: 278 GIAFHPVHGTLATVGSDGR-FSFWDKDARTKLKTSEQLDQP 317
Score = 28.0 bits (63), Expect = 0.22
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGT--LIRVWDTLKKVQLV 65
T ++ N G + A ASS ++ KK +
Sbjct: 310 TSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIF 354
Score = 26.1 bits (58), Expect = 1.3
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 27 HQSELACLALNQTGTMIATASSKGTLIRVWD 57
H + + + G+ + TAS T ++WD
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKT-AKMWD 114
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD
repeat, scaffold protein, ATP- binding, endosome, golgi
apparatus; 1.80A {Saccharomyces cerevisiae}
Length = 437
Score = 31.7 bits (72), Expect = 0.011
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 9 DLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWD 57
+L + S S + + + A +S G I V
Sbjct: 92 NLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQ-IIVLK 139
Score = 31.3 bits (71), Expect = 0.014
Identities = 6/48 (12%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 25 NAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSD 72
+ ++ + +++ ++ +++G I +WD V + G
Sbjct: 211 SPRHGAVSSICIDEECCVLILGTTRGI-IDIWDIRFNVLIRSWSFGDH 257
Score = 26.3 bits (58), Expect = 1.1
Identities = 5/29 (17%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 40 GTMIATASSKGTLIRVWDTLKKVQLVELR 68
+ T S +G I++W+ + +
Sbjct: 76 TPYLITGSDQGV-IKIWNLKEIIVGEVYS 103
Score = 25.5 bits (56), Expect = 1.6
Identities = 2/37 (5%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 23 TINAHQSELACLALNQTG-TMIATASSKGTLIRVWDT 58
++ + A +++ ++ + ++D
Sbjct: 164 NFGKNEYAVRMRAFVNEEKSLLVALTNLSR-VIIFDI 199
Score = 24.0 bits (52), Expect = 7.2
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 25 NAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSD 72
+A + + ++I S T + +W+ K SD
Sbjct: 257 HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN-FVKGHCQYAFINSD 303
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national
project on prote structural and functional analysis,
structural genomics CON SGC; HET: M3L; 1.58A {Homo
sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A*
3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Length = 366
Score = 31.1 bits (71), Expect = 0.017
Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 27 HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSD 72
H+ E+ + G I + + +++W K + ++ D
Sbjct: 160 HRDEVLSADYDLLGEKIMSCGMDHS-LKLWRINSKRMMNAIKESYD 204
Score = 28.4 bits (64), Expect = 0.16
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 23 TINAHQSELACLA--LNQTGTMIATASSKGTLIRVWDT 58
+ Q ++ + ++ M+A + G + VWD
Sbjct: 280 RFDYSQCDIWYMRFSMDFWQKMLALGNQVGK-LYVWDL 316
Score = 24.5 bits (54), Expect = 3.9
Identities = 5/35 (14%), Positives = 12/35 (34%), Gaps = 3/35 (8%)
Query: 27 HQSELACLALNQT---GTMIATASSKGTLIRVWDT 58
H L + N G + A+ + +++
Sbjct: 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYEC 51
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer
signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP:
b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B*
1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A
3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B*
3sn6_B*
Length = 340
Score = 31.3 bits (72), Expect = 0.017
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWD 57
+ H + ++CL + G +AT S +++W+
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSF-LKIWN 340
Score = 30.2 bits (69), Expect = 0.045
Identities = 5/36 (13%), Positives = 11/36 (30%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
I S + A +G +A +++
Sbjct: 92 AIPLRSSWVMTCAYAPSGNYVACGGLDNI-CSIYNL 126
Score = 29.8 bits (68), Expect = 0.060
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 27 HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68
+ ++ +++G ++ VWD LK + L
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFN-CNVWDALKADRAGVLA 309
Score = 29.0 bits (66), Expect = 0.093
Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
T H ++ L+L + + + + ++WD
Sbjct: 179 TFTGHTGDVMSLSLAPDTRLFVSGACDAS-AKLWDV 213
Score = 28.6 bits (65), Expect = 0.14
Identities = 7/36 (19%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
T+ H +++ + ++ +AS G + +WD+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGK-LIIWDS 84
Score = 28.3 bits (64), Expect = 0.18
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
T H+S++ + G AT S T R++D
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDL 255
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 31.2 bits (71), Expect = 0.018
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG 70
AH + +A++ T + + S T +++W+ L + G
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLT-VKLWNWENNWALEQTFEG 138
Score = 30.4 bits (69), Expect = 0.034
Identities = 7/51 (13%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP 73
T + + + + T + T G + +W+ +V++ ++ P
Sbjct: 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGR-VEIWNYETQVEVRSIQVTETP 57
Score = 30.4 bits (69), Expect = 0.038
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSD 72
T+ H S ++ + T +I + S GT +++W++ L G +
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNSSTYKVEKTLNVGLE 271
Score = 27.4 bits (61), Expect = 0.43
Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 40 GTMIATASSKGTLIRVWDTLKKVQLVELRRG 70
+ A+ T ++VW + L G
Sbjct: 153 PSTFASGCLDRT-VKVWSLGQSTPNFTLTTG 182
Score = 23.5 bits (51), Expect = 8.6
Identities = 9/36 (25%), Positives = 12/36 (33%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
T+N C+A + TG AS V
Sbjct: 265 TLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40
repeat, beta propeller, recombination; 1.90A
{Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Length = 397
Score = 31.3 bits (71), Expect = 0.018
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 5 QCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQL 64
+ LS SS + + AH S + L+ N +G + +A G +R WD K ++
Sbjct: 269 ERIGSLSVPT-HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK-LRFWDVKTKERI 326
Query: 65 VELRRGSDP 73
L D
Sbjct: 327 TTLNMHCDD 335
Score = 27.8 bits (62), Expect = 0.31
Identities = 7/50 (14%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 11 SSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGT--LIRVWDT 58
+ L + S ++ + + + + + G+++A A + I +++T
Sbjct: 216 TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYET 265
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori
complex, nuclear pore complex, macromolecular assembly,
MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A
3f3p_A 3ewe_A
Length = 351
Score = 31.1 bits (71), Expect = 0.019
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWD 57
+ H E+ ++ N TGT++++A G +R+W
Sbjct: 301 EHDDHNGEVWSVSWNLTGTILSSAGDDGK-VRLWK 334
Score = 28.4 bits (64), Expect = 0.19
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWD 57
+ H + + + G +AT SS I+V+
Sbjct: 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQH-IKVFK 39
Score = 27.6 bits (62), Expect = 0.33
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 23 TINAHQSELACLALN--QTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATL 76
+ AH S + + + G +IA+AS T +++W+ + RR + TL
Sbjct: 52 SWRAHDSSIVAIDWASPEYGRIIASASYDKT-VKLWEEDPDQEECSGRRWNKLCTL 106
Score = 27.3 bits (61), Expect = 0.39
Identities = 5/20 (25%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 38 QTGTMIATASSKGTLIRVWD 57
G +A + G +R++D
Sbjct: 122 HLGLKLACLGNDGI-LRLYD 140
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS
domain, DEP domain, DHEX domain, GGL domain, propeller,
signaling protein; 1.95A {Mus musculus}
Length = 354
Score = 31.0 bits (71), Expect = 0.020
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 9 DLSSTELSSSSSPV-TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
L+ + + ++ ++ H + L+ + + I TAS GT +WD
Sbjct: 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT-CALWDV 183
Score = 27.9 bits (63), Expect = 0.22
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
H+S++ + +G A+ S T R++D
Sbjct: 235 AFETHESDVNSVRYYPSGDAFASGSDDAT-CRLYDL 269
Score = 27.9 bits (63), Expect = 0.27
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVW 56
+ H++ ++ L ++ GT + S T +RVW
Sbjct: 321 ILFGHENRVSTLRVSPDGTAFCSGSWDHT-LRVW 353
Score = 27.5 bits (62), Expect = 0.34
Identities = 5/35 (14%), Positives = 10/35 (28%), Gaps = 1/35 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWD 57
+ + + A +G IA V+
Sbjct: 101 AVTMPCTWVMACAYAPSGCAIACGGLDNK-CSVYP 134
Score = 27.1 bits (61), Expect = 0.46
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 40 GTMIATASSKGTLIRVWDTLKKVQLVELR 68
G ++ + T I VWD LK ++ L
Sbjct: 296 GRLLFAGYNDYT-INVWDVLKGSRVSILF 323
Score = 27.1 bits (61), Expect = 0.46
Identities = 10/54 (18%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 5 QCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
Q ++ + + + T+ H +++ C+ + I ++S G + VWD+
Sbjct: 41 QVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGK-VIVWDS 93
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor,
WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB:
2zkq_a
Length = 340
Score = 30.9 bits (71), Expect = 0.022
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 14 ELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
EL + A + LA + G + + +RVW
Sbjct: 292 ELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL-VRVWQV 335
Score = 29.4 bits (67), Expect = 0.082
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG 70
H ++ +A + I + S T I++W+TL +
Sbjct: 123 RFVGHTKDVLSVAFSSDNRQIVSGSRDKT-IKLWNTLGVCKYTVQDES 169
Score = 27.5 bits (62), Expect = 0.39
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 9 DLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
L+ E + + H ++ + ++ G + S GT +R+WD
Sbjct: 67 KLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT-LRLWDL 115
Score = 26.7 bits (60), Expect = 0.76
Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 40 GTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATL 76
+ A+ I++WD K+ + EL++ +
Sbjct: 268 RYWLCAATGPS--IKIWDLEGKIIVDELKQEVISTSS 302
Score = 25.9 bits (58), Expect = 1.3
Identities = 7/18 (38%), Positives = 9/18 (50%), Gaps = 1/18 (5%)
Query: 40 GTMIATASSKGTLIRVWD 57
MI +AS T I +W
Sbjct: 51 PDMILSASRDKT-IIMWK 67
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat,
biosynthetic prote structural genomics, structural
genomics consortium; 1.70A {Homo sapiens}
Length = 345
Score = 31.0 bits (71), Expect = 0.022
Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
T+ H++E+ +A +G ++AT S + + VW+
Sbjct: 100 TLEGHENEVKSVAWAPSGNLLATCSRDKS-VWVWEV 134
Score = 29.5 bits (67), Expect = 0.061
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
T+ H+S + LA + +G +A+ S T +R+W
Sbjct: 189 TLEGHESTVWSLAFDPSGQRLASCSDDRT-VRIWRQ 223
Score = 28.3 bits (64), Expect = 0.17
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
V HQ + +A + G +A+AS T +W
Sbjct: 54 SVLSEGHQRTVRKVAWSPCGNYLASASFDAT-TCIWKK 90
Score = 27.9 bits (63), Expect = 0.27
Identities = 6/35 (17%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWD 57
+N+H ++ + + + ++A+AS T ++++
Sbjct: 145 VLNSHTQDVKHVVWHPSQELLASASYDDT-VKLYR 178
Score = 27.5 bits (62), Expect = 0.30
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 33 CLALNQTGTMIATASSKGTLIRVWDT 58
LA N GT++A+ IR+W T
Sbjct: 21 FLAWNPAGTLLASCGGDRR-IRIWGT 45
Score = 27.1 bits (61), Expect = 0.46
Identities = 9/50 (18%), Positives = 14/50 (28%), Gaps = 1/50 (2%)
Query: 27 HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATL 76
H + +A Q +ATA IRV+ +
Sbjct: 251 HSRTIYDIAWCQLTGALATACGDDA-IRVFQEDPNSDPQQPTFSLTAHLH 299
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40
repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Length = 425
Score = 30.7 bits (70), Expect = 0.026
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
+ +++ CLA + G I T G +R+W+
Sbjct: 103 SSGKTTNQVTCLAWSHDGNSIVTGVENGE-LRLWNK 137
Score = 30.3 bits (69), Expect = 0.038
Identities = 7/36 (19%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
+N H++ + + N+ GT I + + +W+
Sbjct: 144 VLNFHRAPIVSVKWNKDGTHIISMDVENV-TILWNV 178
Score = 29.9 bits (68), Expect = 0.044
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
+ H ++ L N T ++ +AS GT +R+W
Sbjct: 242 KLIGHHGPISVLEFNDTNKLLLSASDDGT-LRIWHG 276
Score = 27.2 bits (61), Expect = 0.42
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
+ ++Q G A A G + V+D
Sbjct: 325 LSIVDGVPIFAGRISQDGQKYAVAFMDGQ-VNVYDL 359
Score = 26.1 bits (58), Expect = 1.3
Identities = 7/51 (13%), Positives = 15/51 (29%), Gaps = 2/51 (3%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP 73
H + + + + S G+ +R+W + L P
Sbjct: 284 CFYGHSQSIVSASWVGDDK-VISCSMDGS-VRLWSLKQNTLLALSIVDGVP 332
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision
repair, xeroderma pigmentosum, cytoplasm, DNA repair;
HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B*
4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Length = 383
Score = 30.8 bits (70), Expect = 0.026
Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
++ C+ ++ + M+AT S G + +
Sbjct: 158 KTDSWDYWYCCVDVSVSRQMLATGDSTGR-LLLLGL 192
Score = 28.9 bits (65), Expect = 0.11
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 15 LSSSSSPVTINAHQSELACLALN-QTGTMIATASSKGTLIRVWDT 58
+ +S + H+ + N T + T + IRV+ +
Sbjct: 237 IKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNE-IRVYSS 280
Score = 28.1 bits (63), Expect = 0.26
Identities = 5/37 (13%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 22 VTINAHQSELACLALNQT-GTMIATASSKGTLIRVWD 57
+ + + NQ + +S +G + D
Sbjct: 112 IQGMGPGDAITGMKFNQFNTNQLFVSSIRGA-TTLRD 147
Score = 26.2 bits (58), Expect = 1.1
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 17 SSSSPVTINAHQSELACLALNQTG-TMIATASSKGTLIRVWDT 58
H++++ N ++AT+S T +++WD
Sbjct: 193 DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDAT-VKLWDL 234
Score = 25.0 bits (55), Expect = 2.8
Identities = 5/32 (15%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 27 HQSELACLALNQTGTMIATASSKGTLIRVWDT 58
++ + TG ++A+ I +W+
Sbjct: 351 AAGIISLNKFSPTGDVLASGMG-FN-ILIWNR 380
Score = 24.6 bits (54), Expect = 3.5
Identities = 7/18 (38%), Positives = 9/18 (50%), Gaps = 1/18 (5%)
Query: 40 GTMIATASSKGTLIRVWD 57
T +A S G I +WD
Sbjct: 86 PTTVAVGSKGGD-IILWD 102
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase,
spliceosome, DNA damage, D repair, mRNA processing,
nucleus; 2.60A {Saccharomyces cerevisiae}
Length = 343
Score = 30.5 bits (68), Expect = 0.035
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 27 HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR 69
E + L++ ++A S G + V++ Q
Sbjct: 169 SDVEYSSGVLHKDSLLLALYSPDGI-LDVYNLSSPDQASSRFP 210
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic
cleavage, mRNA transport, nuclear pore complex, nucleus,
phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Length = 316
Score = 30.3 bits (69), Expect = 0.040
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 6 CSQDLS------STELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWD 57
CSQD S++ SP ++ + ++ + T ++A + + +W
Sbjct: 234 CSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNK-VTLWK 290
Score = 29.2 bits (66), Expect = 0.079
Identities = 8/36 (22%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
+H+ + ++ GT +AT SS + ++++D
Sbjct: 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRS-VKIFDV 42
Score = 27.6 bits (62), Expect = 0.29
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 37 NQTGTMIATASSKGTLIRVWD 57
+ G ++A SS G I +
Sbjct: 114 HDYGLILACGSSDGA-ISLLT 133
Score = 24.5 bits (54), Expect = 3.9
Identities = 5/23 (21%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 36 LNQTGTMIATASSKGTLIRVWDT 58
+ + IA+ S G + +W
Sbjct: 224 IGLPTSTIASCSQDGR-VFIWTC 245
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A
{Schizosaccharomyces pombe}
Length = 377
Score = 30.1 bits (68), Expect = 0.041
Identities = 4/39 (10%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 19 SSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWD 57
++ ++ A N T T ++ + +++
Sbjct: 2 ATSQVLHILPKPSYEHAFNSQRTEFVTTTATNQ-VELYE 39
Score = 28.2 bits (63), Expect = 0.20
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWD 57
T + H + C+ I T S V++
Sbjct: 50 TFSDHDKIVTCVDWAPKSNRIVTCSQDRN-AYVYE 83
Score = 27.8 bits (62), Expect = 0.25
Identities = 5/39 (12%), Positives = 11/39 (28%), Gaps = 1/39 (2%)
Query: 20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
S +S + L + ++A + V
Sbjct: 138 SKHLKRPLRSTILSLDWHPNNVLLAAGCADRK-AYVLSA 175
Score = 25.5 bits (56), Expect = 2.0
Identities = 4/37 (10%), Positives = 8/37 (21%), Gaps = 1/37 (2%)
Query: 21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWD 57
+ + + + A S I V
Sbjct: 93 TLVLLRLNRAATFVRWSPNEDKFAVGSGARV-ISVCY 128
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed
beta-propeller, protein binding; 2.30A {Saccharomyces
cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Length = 615
Score = 30.3 bits (69), Expect = 0.043
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 10 LSSTELSSS--SSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
+SS L P T ++ L+ + T IA K +R D
Sbjct: 1 MSSISLKEIIPPQPST---QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDD 48
Score = 29.5 bits (67), Expect = 0.074
Identities = 6/32 (18%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 27 HQSELACLALNQTGTMIATASSKGTLIRVWDT 58
+++ + ++++ + T IA G I ++D
Sbjct: 487 LRAKPSYISISPSETYIAAGDVMGK-ILLYDL 517
Score = 29.1 bits (66), Expect = 0.093
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 19 SSPVTINAHQSELACLALN-QTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP 73
+S T + S + + + +G + T S I +D L + +P
Sbjct: 197 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKSGEFLKYIEDDQEP 251
Score = 29.1 bits (66), Expect = 0.096
Identities = 4/31 (12%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 40 GTMIATASSKGTLIRVWDTLKKVQLVELRRG 70
++AT S I ++ + +++++
Sbjct: 553 EDLVATGSLDTN-IFIYSVKRPMKIIKALNA 582
Score = 28.7 bits (65), Expect = 0.13
Identities = 3/19 (15%), Positives = 6/19 (31%), Gaps = 1/19 (5%)
Query: 40 GTMIATASSKGTLIRVWDT 58
+ + G + VW
Sbjct: 78 SQYLCSGDESGK-VIVWGW 95
Score = 28.4 bits (64), Expect = 0.19
Identities = 6/52 (11%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Query: 22 VTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP 73
+T + S+ + N G + + + + + +R S
Sbjct: 400 ITKHEFGSQPKVASANNDGFTAVLTNDDD--LLILQSFTGDIIKSVRLNSPG 449
Score = 27.6 bits (62), Expect = 0.35
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 23 TINAHQSELACLALNQTGTM-IATASSKGTLIRVWDT 58
++ H + L Q+ M T G+ + +
Sbjct: 155 EVSGHSQRINACHLKQSRPMRSMTVGDDGS-VVFYQG 190
Score = 27.6 bits (62), Expect = 0.37
Identities = 8/19 (42%), Positives = 9/19 (47%), Gaps = 1/19 (5%)
Query: 40 GTMIATASSKGTLIRVWDT 58
AT + T IRVWD
Sbjct: 264 SQKFATVGADAT-IRVWDV 281
Score = 25.7 bits (57), Expect = 1.5
Identities = 5/45 (11%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 27 HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGS 71
L+ N + ++ ++ D L R
Sbjct: 447 SPGSAVSLSQNYVAVGLEEGNTIQV-FKLSDLEVSFDLKTPLRAK 490
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX,
D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 401
Score = 29.9 bits (68), Expect = 0.044
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 22 VTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSD 72
V I AH + + AL+ G +++TA+S ++ W + +
Sbjct: 343 VDIPAHDTRVLYSALSPDGRILSTAASDEN-LKFWRVYDGDHVKRPIPITK 392
Score = 27.2 bits (61), Expect = 0.54
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
T+ H SE+ LA G +A+ + +++WD
Sbjct: 212 TLQGHSSEVCGLAWRSDGLQLASGGNDNV-VQIWDA 246
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A
{Saccharomyces cerevisiae}
Length = 330
Score = 29.9 bits (68), Expect = 0.046
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
I H++E+ +A + G +AT S + + +W+T
Sbjct: 102 IIEGHENEVKGVAWSNDGYYLATCSRDKS-VWIWET 136
Score = 27.2 bits (61), Expect = 0.52
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
AH+ + +A +++A S T + +W
Sbjct: 53 DETAHKKAIRSVAWRPHTSLLAAGSFDST-VSIWAK 87
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling
protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1
b.69.4.1
Length = 435
Score = 30.0 bits (68), Expect = 0.046
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATL 76
+ H+ + C+ + I + + G I+VWD + + TL
Sbjct: 331 VLEGHEELVRCIRFD--NKRIVSGAYDGK-IKVWDLVAALDPRAPAGTLCLRTL 381
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription
inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP:
b.69.4.1
Length = 393
Score = 29.9 bits (68), Expect = 0.047
Identities = 5/36 (13%), Positives = 9/36 (25%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
H + L+ + A K T +
Sbjct: 10 QRANHSKPIPPFLLDLDSQSVPDALKKQT-NDYYIL 44
Score = 29.1 bits (66), Expect = 0.084
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
+ H+ ++ L +G + + S T +R+WD
Sbjct: 160 ILQGHEQDIYSLDYFPSGDKLVSGSGDRT-VRIWDL 194
Score = 27.6 bits (62), Expect = 0.32
Identities = 7/48 (14%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 11 SSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
++ + + + + + + + + G +AT + IR+WD
Sbjct: 106 AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL-IRIWDI 152
Score = 27.6 bits (62), Expect = 0.37
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
T H+ + +A Q I + S + WD
Sbjct: 305 TYIGHKDFVLSVATTQNDEYILSGSKDRG-VLFWDK 339
Score = 27.2 bits (61), Expect = 0.47
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 40 GTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75
G IA S +RVWD+ + L ++ T
Sbjct: 219 GKYIAAGSLDRA-VRVWDSETGFLVERLDSENESGT 253
Score = 25.3 bits (56), Expect = 2.0
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 27 HQSELACLALNQTGTMIATASSKGTLIRVWDT 58
H S + C+ + G +AT +K +V+
Sbjct: 63 HTSVVCCVKFSNDGEYLATGCNK--TTQVYRV 92
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage
repair; HET: DNA; 3.31A {Homo sapiens}
Length = 408
Score = 29.9 bits (68), Expect = 0.047
Identities = 4/36 (11%), Positives = 8/36 (22%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
+ LN ++S + W
Sbjct: 368 PVPDDDETTTKSQLNPAFEDAWSSSDEEGGTSAWSH 403
Score = 29.5 bits (67), Expect = 0.073
Identities = 5/36 (13%), Positives = 9/36 (25%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
+ H + C + + S I W
Sbjct: 329 MLKGHYKTVDCCVFQSNFQELYSGSRDCN-ILAWVP 363
Score = 27.2 bits (61), Expect = 0.41
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
AH ++ L G + T + +R+W++
Sbjct: 240 ANTAHNGKVNGLCFTSDGLHLLTVGTDNR-MRLWNS 274
Score = 24.5 bits (54), Expect = 4.6
Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 23 TINAHQSELACLALNQTGTMI-ATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75
+ H+ E+ ++ + I ATAS+ +++WD + + +
Sbjct: 181 ILQGHRQEILAVSWSPRYDYILATASADSR-VKLWDVRRASGCLITLDQHNGKK 233
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40
beta-barrel fold, DNA D DNA repair, HOST-virus
interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB:
3ei4_B*
Length = 435
Score = 30.0 bits (68), Expect = 0.048
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 19 SSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
+S + H+ + + G + T K IRV+
Sbjct: 287 ASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE-IRVYSA 325
Score = 29.7 bits (67), Expect = 0.060
Identities = 4/34 (11%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 25 NAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
+ L ++ + M+ T + G + + +
Sbjct: 206 DTINIWFCSLDVSASSRMVVTGDNVGN-VILLNM 238
Score = 27.0 bits (60), Expect = 0.64
Identities = 4/31 (12%), Positives = 9/31 (29%)
Query: 40 GTMIATASSKGTLIRVWDTLKKVQLVELRRG 70
+ + I V+D + +L
Sbjct: 367 PNFKSCTPYELRTIDVFDGNSGKMMCQLYDP 397
Score = 26.6 bits (59), Expect = 0.87
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 23 TINAHQSELACLALNQTGT-MIATASSKGTLIRVWD 57
LA + T +A S G I +W+
Sbjct: 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGD-IMLWN 148
Score = 26.2 bits (58), Expect = 0.97
Identities = 5/19 (26%), Positives = 8/19 (42%), Gaps = 1/19 (5%)
Query: 40 GTMIATASSKGTLIRVWDT 58
+S +GT R+ D
Sbjct: 177 TNQFYASSMEGT-TRLQDF 194
Score = 24.6 bits (54), Expect = 3.3
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 23 TINAHQSELACLALNQTGT-MIATASSKGTLIRVWDT 58
+ H+ ++ +ALN +ATAS T +++WD
Sbjct: 245 NLRMHKKKVTHVALNPCCDWFLATASVDQT-VKIWDL 280
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31;
beta propeller, alpha solenoid; 2.35A {Saccharomyces
cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Length = 297
Score = 29.9 bits (68), Expect = 0.051
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
NAH + ++ G +AT SS T I++++
Sbjct: 4 IANAHNEMIHDAVMDYYGKRMATCSSDKT-IKIFEV 38
Score = 29.5 bits (67), Expect = 0.067
Identities = 7/59 (11%), Positives = 19/59 (32%), Gaps = 8/59 (13%)
Query: 6 CSQD-------LSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWD 57
SQD + + + + L + + +G ++A + + +W
Sbjct: 225 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK-VTLWK 282
Score = 27.6 bits (62), Expect = 0.30
Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 37 NQTGTMIATASSKGTLIRVWD 57
++ G M+ ASS G + V +
Sbjct: 110 HEYGPMLLVASSDGK-VSVVE 129
>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum, ER-golgi transport, membrane,
mRNA transport; 4.00A {Saccharomyces cerevisiae}
Length = 753
Score = 29.9 bits (67), Expect = 0.053
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
NAH + L+ G +AT SS T I++++
Sbjct: 4 IANAHNELIHDAVLDYYGKRLATCSSDKT-IKIFEV 38
Score = 28.0 bits (62), Expect = 0.24
Identities = 7/60 (11%), Positives = 19/60 (31%), Gaps = 8/60 (13%)
Query: 6 CSQD-------LSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
SQD + + + + L + + +G ++A + + +W
Sbjct: 225 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK-VTLWKE 283
Score = 28.0 bits (62), Expect = 0.30
Identities = 6/21 (28%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 37 NQTGTMIATASSKGTLIRVWD 57
++ G ++ ASS G + V +
Sbjct: 110 HEYGPLLLVASSDGK-VSVVE 129
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide
complex, E3 ubiquitin ligase, cell cycle, phospho
binding protein, phosphorylation; HET: SEP; 2.31A
{Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Length = 464
Score = 29.9 bits (68), Expect = 0.057
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
++ H + + +AS T IR+WD
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDL 339
Score = 27.2 bits (61), Expect = 0.54
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 40 GTMIATASSKGTLIRVWDTLKKVQLVELR 68
+ T + IRV+D++ K L++L
Sbjct: 132 DNYVITGADDKM-IRVYDSINKKFLLQLS 159
Score = 24.5 bits (54), Expect = 4.6
Identities = 5/38 (13%), Positives = 12/38 (31%), Gaps = 4/38 (10%)
Query: 22 VTINAHQSELACLALNQTGTMIATASSKG--TLIRVWD 57
I ++ + G + A K + + + D
Sbjct: 427 ANILKDADQIWSVNFK--GKTLVAAVEKDGQSFLEILD 462
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double
phosphorylation, transcription-C complex; HET: TPO;
2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB:
2ovp_B* 2ovq_B*
Length = 445
Score = 29.9 bits (68), Expect = 0.057
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 12/56 (21%)
Query: 5 QCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTL---IRVWD 57
+ ++L + E S V + + T + A S GT + V D
Sbjct: 393 EFIRNLVTLESGGSGGVVW---------RIRASNTKLVCAVGSRNGTEETKLLVLD 439
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional
CO-repressor, WD40, transcription repressor, WD repeat;
1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Length = 337
Score = 29.8 bits (68), Expect = 0.057
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 9 DLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWD 57
D+S S S + + + L G + T + +WD
Sbjct: 78 DISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST-LSIWD 125
Score = 28.2 bits (64), Expect = 0.20
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68
+ + LA++ + + S G I VWD + + + +
Sbjct: 136 ELTSSAPACYALAISPDSKVCFSCCSDGN-IAVWDLHNQTLVRQFQ 180
Score = 27.5 bits (62), Expect = 0.41
Identities = 6/42 (14%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 17 SSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
+ ++ H+S + L G + + W T
Sbjct: 254 NKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRT 294
Score = 27.1 bits (61), Expect = 0.56
Identities = 5/31 (16%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 27 HQSELACLALNQTGTMIATASSKGTLIRVWD 57
S + ++ I T S V++
Sbjct: 305 ESSSVLSCDISVDDKYIVTGSGDKK-ATVYE 334
>3hsh_A Endostatin, collagen alpha-1(XVIII) chain; extracellular matrix,
basement membrane, collagen trimerization domain,
folding, association; 1.80A {Homo sapiens} PDB: 3hon_A
Length = 56
Score = 28.0 bits (62), Expect = 0.073
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 18 SSSPVTI-NAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVEL 67
SS V + Q+ L + G +I A + +RV + +KVQL
Sbjct: 1 GSSGVRLWATRQAMLGQVHEVPEGWLIFVAEQEELYVRVQNGFRKVQLEAR 51
>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Length = 379
Score = 29.6 bits (67), Expect = 0.076
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
NAH + L+ G +AT SS T I++++
Sbjct: 6 IANAHNELIHDAVLDYYGKRLATCSSDKT-IKIFEV 40
Score = 28.4 bits (64), Expect = 0.15
Identities = 7/59 (11%), Positives = 19/59 (32%), Gaps = 8/59 (13%)
Query: 6 CSQD-------LSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWD 57
SQD + + + + L + + +G ++A + + +W
Sbjct: 227 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK-VTLWK 284
Score = 27.7 bits (62), Expect = 0.30
Identities = 6/21 (28%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 37 NQTGTMIATASSKGTLIRVWD 57
++ G ++ ASS G + V +
Sbjct: 112 HEYGPLLLVASSDGK-VSVVE 131
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 29.1 bits (66), Expect = 0.096
Identities = 2/36 (5%), Positives = 4/36 (11%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
H L + +
Sbjct: 103 IAGRHTPGTFTNQLQTSFSEPRLLILTDP-RTDHQP 137
Score = 28.7 bits (65), Expect = 0.14
Identities = 0/31 (0%), Positives = 0/31 (0%), Gaps = 1/31 (3%)
Query: 27 HQSELACLALNQTGTMIATASSKGTLIRVWD 57
Sbjct: 343 - 372
Score = 28.7 bits (65), Expect = 0.14
Identities = 5/53 (9%), Positives = 8/53 (15%), Gaps = 1/53 (1%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75
A A ++ +GS P
Sbjct: 244 GGEWGTDAAAQPAAIPAQAGADWTAAPAP-AAGGWDTAAAPAPGWEQGSAPVP 295
Score = 27.9 bits (63), Expect = 0.28
Identities = 0/28 (0%), Positives = 0/28 (0%), Gaps = 1/28 (3%)
Query: 40 GTMIATASSKGTLIRVWDTLKKVQLVEL 67
Sbjct: 310 - 336
Score = 27.5 bits (62), Expect = 0.33
Identities = 1/36 (2%), Positives = 7/36 (19%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
+ + + Q + + +
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQR-AVLKFA 95
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_R
Length = 343
Score = 29.1 bits (66), Expect = 0.098
Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 1/47 (2%)
Query: 12 STELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
+ E + + LA N G + + G IR +
Sbjct: 293 TIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGV-IRTFSF 338
Score = 26.8 bits (60), Expect = 0.70
Identities = 7/54 (12%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATL 76
S + +A N +A + +G +++++ + + + ++P T
Sbjct: 250 REFDAGSTINQIAFNPKLQWVAVGTDQG--VKIFNLMTQSKAPVCTIEAEPITK 301
Score = 26.4 bits (59), Expect = 0.83
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
+ H ++ LAL+Q ++S T +R+WD
Sbjct: 71 ALTGHNHFVSDLALSQENCFAISSSWDKT-LRLWDL 105
Score = 26.0 bits (58), Expect = 1.3
Identities = 3/19 (15%), Positives = 8/19 (42%), Gaps = 1/19 (5%)
Query: 40 GTMIATASSKGTLIRVWDT 58
++ + S T + +W
Sbjct: 39 SPVLISGSRDKT-VMIWKL 56
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller,
structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1
PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C*
2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Length = 372
Score = 28.8 bits (65), Expect = 0.13
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 27 HQSELACLALNQTGTMIATASSKGTLIRVWD--TLKKVQLVELR 68
++C A N+ T IA + + +++ K VQ+ EL+
Sbjct: 7 LVEPISCHAWNKDRTQIAICPNNHE-VHIYEKSGNKWVQVHELK 49
Score = 26.1 bits (58), Expect = 1.2
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68
++ + + + G+ +A S T + + D KK+ + L
Sbjct: 197 ESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADKKMAVATLA 241
Score = 25.3 bits (56), Expect = 2.1
Identities = 4/36 (11%), Positives = 14/36 (38%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
T+ + L + +++A ++ +D+
Sbjct: 239 TLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 274
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 0.20
Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 21/69 (30%)
Query: 2 LYLQCS-QDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLK 60
YL C QDL +++P L+ +IA S + L WD K
Sbjct: 309 KYLDCRPQDLP--REVLTTNP------------RRLS----IIA-ESIRDGLAT-WDNWK 348
Query: 61 KVQLVELRR 69
V +L
Sbjct: 349 HVNCDKLTT 357
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein;
RACK1, WD40, beta propeller, ribosome, translation,
acetylation; 2.13A {Saccharomyces cerevisiae} PDB:
3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A
3jyv_R*
Length = 319
Score = 27.9 bits (63), Expect = 0.22
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 27 HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68
Q E+ LA + +A A++ G I+V+ + + +LR
Sbjct: 236 AQDEVFSLAFSPNRYWLAAATATG--IKVFSLDPQYLVDDLR 275
Score = 27.5 bits (62), Expect = 0.34
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 25 NAHQSELACLALNQTGTMIATASSKGTLIRVWD 57
A + LA + G + + IRVW
Sbjct: 283 KAAEPHAVSLAWSADGQTLFAGYTDNV-IRVWQ 314
Score = 27.1 bits (61), Expect = 0.56
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
H S + L + GT+IA+A G I +W+
Sbjct: 191 DFIGHNSNINTLTASPDGTLIASAGKDGE-IMLWNL 225
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A,
receptor for activiated protein C-kinase 1,
beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia
coli}
Length = 694
Score = 27.7 bits (62), Expect = 0.34
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTL 59
H ++ +A + I +AS T I++W+TL
Sbjct: 467 RFVGHTKDVLSVAFSLDNRQIVSASRDRT-IKLWNTL 502
Score = 26.6 bits (59), Expect = 0.89
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 40 GTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75
+ A+ G I++WD K + +L+
Sbjct: 614 RYWLCAATEHG--IKIWDLESKSIVEDLKVDLKAEA 647
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY
crystallography, beta-propeller, structure, mRNA export,
NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens}
PDB: 3fmo_A* 3fmp_A* 3fhc_A
Length = 434
Score = 27.6 bits (60), Expect = 0.34
Identities = 4/44 (9%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 14 ELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWD 57
+++ + + + + G +A GT + +
Sbjct: 178 QVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGT-VVQYL 220
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural
genomics, structural genomic consortium, SGC,
apoptosis, transcription; 1.95A {Homo sapiens}
Length = 357
Score = 27.3 bits (61), Expect = 0.43
Identities = 4/19 (21%), Positives = 8/19 (42%), Gaps = 1/19 (5%)
Query: 40 GTMIATASSKGTLIRVWDT 58
+AT G + +W+
Sbjct: 80 QRYLATGDFGGN-LHIWNL 97
Score = 24.2 bits (53), Expect = 5.2
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 9 DLSSTELSSSSSPVTINAHQSELACLALN-QTGTMIATASSKGTLIRVWD 57
D+ + + + V+ AH+S + + Q + TA G + +W
Sbjct: 240 DMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG-LHLWK 288
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A
{Saccharomyces cerevisiae}
Length = 313
Score = 26.7 bits (60), Expect = 0.67
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
T+ HQ + L+ ++ + S T +VW
Sbjct: 99 TLIGHQGNVCSLSFQ--DGVVISGSWDKT-AKVWKE 131
Score = 26.7 bits (60), Expect = 0.69
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 23 TINAHQSE-LACLALNQTGTMIATASSKGTLIRVWDT 58
+ AH + ++ + TAS+ T I++W
Sbjct: 137 NLQAHNASVWDAKVVSFSENKFLTASADKT-IKLWQN 172
Score = 26.3 bits (59), Expect = 0.85
Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 2/36 (5%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
I + + G I SS +R++
Sbjct: 261 VITLPAISIWSVDCMSNGD-IIVGSSDNL-VRIFSQ 294
Score = 25.6 bits (57), Expect = 1.7
Identities = 3/46 (6%), Positives = 12/46 (26%), Gaps = 2/46 (4%)
Query: 15 LSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTL--IRVWDT 58
+ Q L + + ++ + + ++ T
Sbjct: 46 KDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFAT 91
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha
isoform; holoenzyme, PR55, WD repeat, hydrolase, iron,
manganese binding, methylation, phosphoprotein, protein
phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Length = 447
Score = 26.6 bits (58), Expect = 0.92
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 37 NQTGTMIATASSKGTLIRVWDT 58
+ +SSKGT IR+ D
Sbjct: 236 PNSCNTFVYSSSKGT-IRLCDM 256
Score = 26.3 bits (57), Expect = 0.98
Identities = 6/49 (12%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Query: 22 VTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG 70
+ NAH + +++N + + I +W + +
Sbjct: 171 IFANAHTYHINSISINSDYETYLS-ADDLR-INLWHLEITDRSFNIVDI 217
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 25.3 bits (55), Expect = 2.2
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 6 CSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTL---IRVWDTLKKV 62
D+ +++S + VT+ + C+A+ M G L +R W
Sbjct: 888 THFDIRISDISPFNKAVTVPKNSKTDRCIAIEPGWNMFFQLGIGGILRDRLRCWGIDLND 947
Query: 63 QLVELRRGSDPATL 76
Q + RR + +
Sbjct: 948 QTINQRRAHEGSVT 961
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis
complex; 2.40A {Saccharomyces cerevisiae}
Length = 902
Score = 25.6 bits (55), Expect = 2.2
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 27 HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGS 71
S+ A + T ++A A+ G + ++ + +++L S
Sbjct: 16 MSSKPIAAAFDFTQNLLAIATVTGE-VHIYGQQQVEVVIKLEDRS 59
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat
protein TRM82; S-adenosyl-L-methionine, tRNA processing,
phosphorylation, M7G, spout MT, WD repeat; 2.40A
{Saccharomyces cerevisiae}
Length = 450
Score = 25.0 bits (54), Expect = 3.0
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTG-TMIATASSKGTLIRVWDT 58
+ T S + S + L L +IA A S + + V+D
Sbjct: 81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKS-LLVFDV 132
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.40A {Anas platyrhynchos}
Length = 797
Score = 24.9 bits (53), Expect = 3.2
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 5 QCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKG-TLI 53
S + ++Q ELA A+N +I + G T +
Sbjct: 230 LGSAAEGIGKPPPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFV 279
>3n3f_A Collagen alpha-1(XV) chain; extracellular matrix, basement
membrane, collagen trimerization domain, folding,
association, chain selection helix; 2.00A {Homo
sapiens}
Length = 54
Score = 23.7 bits (51), Expect = 3.4
Identities = 16/45 (35%), Positives = 18/45 (40%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVEL 67
+ L L GT I S IRV D KK+QL EL
Sbjct: 5 AFSNMDDMLQKAHLVIEGTFIYLRDSTEFFIRVRDGWKKLQLGEL 49
>3n4p_A Terminase subunit UL89 protein; nuclease, human cytomegalovirus,
HCMV, herpesviru packaging, DNA binding protein; 2.15A
{Human herpesvirus 5} PDB: 3n4q_A 2kn8_A*
Length = 279
Score = 23.7 bits (51), Expect = 8.0
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 3 YLQCSQDLSSTELSSSSSPVTINAHQ-SELACLALNQTGTMIATASSKGTL 52
Y++ SQ+L S + S P+ Q L + L + T +A + +
Sbjct: 203 YIKASQELVSYTIKLSHDPIEYLLEQIQNLHRVTLAEGTTARYSAKRQNRI 253
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.123 0.352
Gapped
Lambda K H
0.267 0.0860 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,007,244
Number of extensions: 41406
Number of successful extensions: 308
Number of sequences better than 10.0: 1
Number of HSP's gapped: 292
Number of HSP's successfully gapped: 222
Length of query: 78
Length of database: 6,701,793
Length adjustment: 47
Effective length of query: 31
Effective length of database: 5,389,506
Effective search space: 167074686
Effective search space used: 167074686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.2 bits)