RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1940
(78 letters)
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 38.2 bits (87), Expect = 3e-05
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLYW 78
++ H+S + + + +++ +AS T I+VWD L+ +D
Sbjct: 12 ALSGHRSPVTRVIFHPVFSVMVSASEDAT-IKVWDYETGDFERTLKGHTDSVQDIS 66
Score = 37.0 bits (84), Expect = 6e-05
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWD 57
T+NAH+ + L ++T + T S T ++VW+
Sbjct: 284 TLNAHEHFVTSLDFHKTAPYVVTGSVDQT-VKVWE 317
Score = 34.3 bits (77), Expect = 5e-04
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75
T+ H + + + + G I + + T +RVWD K + L T
Sbjct: 242 TLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKNKRCMKTLNAHEHFVT 293
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1
{Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 36.9 bits (83), Expect = 7e-05
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG 70
H + L+ + G + +A ++G I WD +
Sbjct: 7 VRYGHNKAITALSSSADGKTLFSADAEGH-INSWDISTGISNRVFPDV 53
Score = 27.3 bits (58), Expect = 0.16
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 17 SSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWD 57
S + AH + T I +A I+ W+
Sbjct: 257 SDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSN-IKFWN 296
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 36.6 bits (83), Expect = 8e-05
Identities = 8/44 (18%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 14 ELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWD 57
+ + + H + ++CL + G +AT S +++W+
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF-LKIWN 340
Score = 31.2 bits (69), Expect = 0.008
Identities = 7/49 (14%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 27 HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75
+ ++ +++G ++ VWD LK + L + +
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFN-CNVWDALKADRAGVLAGHDNRVS 316
Score = 29.3 bits (64), Expect = 0.033
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVW 56
T+ H +++ + ++ +AS G LI
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD 83
Score = 28.2 bits (61), Expect = 0.086
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 15 LSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVW 56
+ T H+S++ + G AT S T
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 36.4 bits (82), Expect = 1e-04
Identities = 6/47 (12%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR 69
A + ++ + + + +++ S G+ + V+ + + V+L +
Sbjct: 6 IEQAPKDYISDIKIIPSKSLLLITSWDGS-LTVYKFDIQAKNVDLLQ 51
Score = 27.9 bits (60), Expect = 0.10
Identities = 6/45 (13%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 27 HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGS 71
+ + + + TA S G I W+ + ++ + +
Sbjct: 250 LAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQTRKKIKNFAKFN 293
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 36.3 bits (82), Expect = 1e-04
Identities = 5/43 (11%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 17 SSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTL 59
+ + + S + ++ I T S V++ +
Sbjct: 295 PYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKK-ATVYEVI 336
Score = 33.6 bits (75), Expect = 9e-04
Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 1/52 (1%)
Query: 27 HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLYW 78
H+S + L G + + W T + + + S +
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSKESSSVLSCDI 314
Score = 31.7 bits (70), Expect = 0.004
Identities = 6/60 (10%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
Query: 10 LSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR 69
L + + + H + + ++ + T ++VWD + +
Sbjct: 33 LIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGC--VKVWDISHPGNKSPVSQ 90
Score = 23.2 bits (48), Expect = 5.1
Identities = 6/42 (14%), Positives = 11/42 (26%)
Query: 9 DLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKG 50
D+S S S + + + L G +
Sbjct: 78 DISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 32.5 bits (72), Expect = 0.003
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 9 DLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTL---IRVWD 57
DL + E + + + + + T + A S GT + V D
Sbjct: 286 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 371
Score = 32.1 bits (71), Expect = 0.004
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 33 CLALNQTGTMIATASSKGTLIRVWD--TLKKVQLVELRRGSDPAT 75
C A N+ T IA + + +++ K VQ+ EL+ + T
Sbjct: 12 CHAWNKDRTQIAICPNNHE-VHIYEKSGNKWVQVHELKEHNGQVT 55
Score = 29.8 bits (65), Expect = 0.019
Identities = 5/35 (14%), Positives = 10/35 (28%), Gaps = 1/35 (2%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWD 57
+ H ++ + I T + VW
Sbjct: 46 ELKEHNGQVTGVDWAPDSNRIVTCGTDRN-AYVWT 79
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 30.9 bits (68), Expect = 0.008
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 8/46 (17%)
Query: 23 TINAHQSELACLA------LNQTGTMIATASSKGTLIRVWDTLKKV 62
+ H++ + +A L + AT S R+W KK+
Sbjct: 345 MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK-ARIWK-YKKI 388
Score = 29.0 bits (63), Expect = 0.042
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 27 HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP 73
H S + C+ + G +AT +K +V+ + L S
Sbjct: 61 HTSVVCCVKFSNDGEYLATGCNKT--TQVYRVSDGSLVARLSDDSAA 105
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 31.0 bits (68), Expect = 0.009
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 23 TINAHQSE-LACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP 73
T+ H + + CL + T + IRV+D++ K L++L
Sbjct: 7 TLRGHMTSVITCLQFE--DNYVITGADDKM-IRVYDSINKKFLLQLSGHDGG 55
Score = 25.6 bits (54), Expect = 0.73
Identities = 3/36 (8%), Positives = 10/36 (27%)
Query: 22 VTINAHQSELACLALNQTGTMIATASSKGTLIRVWD 57
I ++ + + A + + + D
Sbjct: 318 ANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILD 353
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 30.7 bits (67), Expect = 0.011
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 5/50 (10%)
Query: 11 SSTELSS--SSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
SS L P T + L+ + T IA K +R D
Sbjct: 1 SSISLKEIIPPQPSTQRNFTT---HLSYDPTTNAIAYPCGKSAFVRCLDD 47
Score = 24.1 bits (50), Expect = 2.4
Identities = 6/47 (12%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 14 ELSSSSSPVTINAHQSELACLALN---QTGTMIATASSKGTLIRVWD 57
++++S + +L + I + S GT + ++
Sbjct: 279 DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT-LNFYE 324
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 30.7 bits (67), Expect = 0.012
Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTL 59
+NAH+ + L T + ++ + I+ W+ +
Sbjct: 253 ALNAHKDGVNNLLWETPST-LVSSGADAC-IKRWNVV 287
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 29.1 bits (63), Expect = 0.045
Identities = 7/55 (12%), Positives = 15/55 (27%), Gaps = 10/55 (18%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLY 77
+ ++ L L L+ + G I + + D T+
Sbjct: 309 KVTEVKNNLTDLRLSADRKTVMVRKDDGK-IYTFPL---------EKPEDERTVE 353
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 28.3 bits (61), Expect = 0.073
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 14 ELSSSSSPVTINAHQS-ELACLALNQTGTMIATASSKGTLIRVWD 57
+++ TI E L + T + + S+ G I +
Sbjct: 266 NVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF-INFVN 309
Score = 25.2 bits (53), Expect = 0.83
Identities = 5/42 (11%), Positives = 12/42 (28%)
Query: 15 LSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVW 56
+ S + H + + +G A+ G +
Sbjct: 45 VGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWD 86
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 24.8 bits (52), Expect = 1.2
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 34 LALNQTGTMIATASSKGTLIRVWDT 58
++ GT + A++ + + DT
Sbjct: 37 AVISPDGTKVYVANAHSNDVSIIDT 61
Score = 24.8 bits (52), Expect = 1.4
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP 73
I + A +A+ G + A S + V DT + G +P
Sbjct: 239 RIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNP 288
>d1dnva_ b.121.5.3 (A:) Densovirus capsid protein {Galleria
mellonella densovirus [TaxId: 37138]}
Length = 415
Score = 22.2 bits (47), Expect = 9.3
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 16 SSSSSPVTINAHQSELACLALNQTG 40
S+ + T+N + + LN+ G
Sbjct: 98 STVTKQATLNQISNVQTAIGLNKLG 122
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.123 0.352
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 239,408
Number of extensions: 7527
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 32
Length of query: 78
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 33
Effective length of database: 1,789,746
Effective search space: 59061618
Effective search space used: 59061618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.8 bits)