Query psy195
Match_columns 691
No_of_seqs 302 out of 3193
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 20:27:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy195.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/195hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 100.0 4.9E-30 1.7E-34 289.0 24.6 446 16-687 7-514 (524)
2 4aps_A DI-OR tripeptide H+ sym 100.0 6.5E-28 2.2E-32 269.2 38.0 443 14-685 6-481 (491)
3 4gc0_A D-xylose-proton symport 99.9 3.1E-24 1E-28 239.2 15.4 144 56-204 54-209 (491)
4 1pw4_A Glycerol-3-phosphate tr 99.9 2.1E-20 7.1E-25 205.1 29.4 170 24-214 31-205 (451)
5 3o7q_A L-fucose-proton symport 99.9 1.5E-19 5E-24 197.8 35.4 153 19-182 24-177 (438)
6 2gfp_A EMRD, multidrug resista 99.8 5.1E-18 1.8E-22 182.2 16.7 165 25-209 4-168 (375)
7 2cfq_A Lactose permease; trans 99.7 3.7E-17 1.3E-21 179.3 9.8 168 20-204 6-176 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.4 3.3E-11 1.1E-15 131.6 21.7 177 21-214 252-432 (451)
9 3o7q_A L-fucose-proton symport 99.3 2.7E-10 9.1E-15 124.1 21.8 166 21-208 258-425 (438)
10 2cfq_A Lactose permease; trans 99.2 4.6E-10 1.6E-14 122.7 17.4 173 22-213 221-397 (417)
11 4aps_A DI-OR tripeptide H+ sym 98.9 2.2E-09 7.5E-14 119.0 11.0 182 23-217 285-473 (491)
12 4gc0_A D-xylose-proton symport 98.8 4.1E-07 1.4E-11 100.5 21.5 174 34-217 290-464 (491)
13 2gfp_A EMRD, multidrug resista 98.5 2.9E-08 1E-12 105.8 4.3 161 21-201 199-362 (375)
14 2xut_A Proton/peptide symporte 97.7 1.1E-05 3.8E-10 89.8 3.2 120 59-183 337-466 (524)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=4.9e-30 Score=289.04 Aligned_cols=446 Identities=35% Similarity=0.660 Sum_probs=293.4
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhH
Q psy195 16 QPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLL------YDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFL 89 (691)
Q Consensus 16 ~~~~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg------~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk 89 (691)
.++++|.++.+.+..++..++++++.++++.|+++++| ++..+++++.+.+.++..++.+++|+++||++|||+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~ 86 (524)
T 2xut_A 7 APKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN 86 (524)
T ss_dssp ------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 34567778888888999999999999999999999999 999999999999999999999999999999449999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhH---HHHHHHHHHH
Q psy195 90 TIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQL---EKFFSLFYFS 166 (691)
Q Consensus 90 ~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~r---g~~~~~~~~~ 166 (691)
++.++.++..++.+++..+. .+. +.++++|++.|++.|...++..++++|++| +++| ...+++++.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~~~ 156 (524)
T 2xut_A 87 TILWLSLIYCVGHAFLAIFE-HSV-----QGFYTGLFLIALGSGGIKPLVSSFMGDQFD----QSNKSLAQKAFDMFYFT 156 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-SCH-----HHHHHHHHHHHHHHHTTHHHHHHHHHHTCS----TTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc-ccH-----HHHHHHHHHHHHhccccchhHHHHHHHHcC----ccchHHHHHHHHHHHHH
Confidence 99999999999888877753 012 778899999999999999999999999998 5555 4556669999
Q ss_pred HHHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHhhcccccccCCCCCcchhHHHHHHHHHhhhccc
Q psy195 167 INAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKT 246 (691)
Q Consensus 167 ~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~vi~~~i~~~~~~ 246 (691)
.++|.+++|.+++++.+ ..+|+..|.+.+++.++++++++...++.+..+|++++..+..+.+....+++...
T Consensus 157 ~~~g~~~g~~~~~~l~~-------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (524)
T 2xut_A 157 INFGSFFASLSMPLLLK-------NFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEG 229 (524)
T ss_dssp HHHHHHHHHHTSTHHHH-------TSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTT
T ss_pred HHHHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcc
Confidence 99999999999998876 46799999988877766666655544444333332222112111111111111100
Q ss_pred ccc-------------------c-------------------ccccch--hhhcccccCCccHHHHHHHHHHHHHHHHHH
Q psy195 247 KKS-------------------E-------------------RTKEHW--LDYANDKYDQGTIEDIKTLLRILLLFVPLP 286 (691)
Q Consensus 247 ~~~-------------------~-------------------~~~~~~--l~~~~~~~~~~~v~~~k~~l~~l~l~~~~~ 286 (691)
.+. . ..+..| +++.+....+...++.|+.+..+.++....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (524)
T 2xut_A 230 KGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVT 309 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSH
T ss_pred cCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHH
Confidence 000 0 000011 111111112222233455555555666566
Q ss_pred HHHHHHhcccchHHHHHHHhcCcccCCceeecchhHhhhhHHHHHHHHHHHHHHHHHHHHhcCCC-CchhHHHHHHHHHH
Q psy195 287 IFWALFDQQGSRWTFQANRMDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLN-RPLRKLTVGGLLAA 365 (691)
Q Consensus 287 ~~~~~~~q~~s~~~~~~~~~~~~l~~G~~~i~~~~l~~in~i~iii~~pl~~~~l~p~l~R~~~~-s~l~~i~iG~ll~~ 365 (691)
.++..+.+..+.+..+...++... + .+.+.+...+.+..++..|+.+++.+|+++|++.+ ++.+++.+|.++.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 384 (524)
T 2xut_A 310 PFWSLFDQKASTWILQANDMVKPQ----W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITG 384 (524)
T ss_dssp HHHTTTSSTTTHHHHHHHHSCCCS----S-SCHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHH
T ss_pred HHHHHHhccchhhHHhHHhcCCCe----e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 666667777777777665543221 1 24667778888888888999998778888888655 66777888888887
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCceeEEEEecCCCceeEecCCCcccccccccccccccccccccccccccCCCCCCCc
Q psy195 366 LSFVVSALVEFNIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPINGTQHFAALFEPSTSCP 445 (691)
Q Consensus 366 ~s~li~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (691)
+++++++..+...
T Consensus 385 ~~~~~~~~~~~~~------------------------------------------------------------------- 397 (524)
T 2xut_A 385 LSWIVVGTIQLMM------------------------------------------------------------------- 397 (524)
T ss_dssp HHHHTTTTTTTTT-------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHh-------------------------------------------------------------------
Confidence 7765543322100
Q ss_pred ccccccceeeeeccCCcceeeeeecchhhhhhcccCcceeeeeccCchhhhhhhhccccccccceeeecCCccccCCCCC
Q psy195 446 YVLNKTFQSSVLGADGKITEYYLIRDEKQQAHLKRLGEFHDLRNINSSLKMQILYGSELQGKRITLESDDGFYQDIDLPT 525 (691)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (691)
T Consensus 398 -------------------------------------------------------------------------------- 397 (524)
T 2xut_A 398 -------------------------------------------------------------------------------- 397 (524)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccceeecCcccceeeecccchhhhccccccCCceeEEeeccCCCCccccccccccCCCCceeeehhhHHHHHHHHHhH
Q psy195 526 GACYTEYIEGIPAGVYEVRSENKVLKSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEI 605 (691)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~w~~pq~~~~~~~ei 605 (691)
..+...+..|+++.+++.++++.
T Consensus 398 ---------------------------------------------------------~~~~~~~~~~~~~~~~l~g~~~~ 420 (524)
T 2xut_A 398 ---------------------------------------------------------DGGSALSIFWQILPYALLTFGEV 420 (524)
T ss_dssp ---------------------------------------------------------TTTCCCCSHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------cCCCCcCHHHHHHHHHHHHHHHH
Confidence 00001257889999999999999
Q ss_pred hhcchheeeecccCchhhhHHHHHHHHHHHHHHHHHHHHhhhhhcCCc--h----------HHHHHHHHHHHHHHHHHHH
Q psy195 606 MFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFEN--Q----------AYEFLLFASLMVVDMGVFA 673 (691)
Q Consensus 606 ~~~~~~~ef~~~~aP~~mr~~~~a~~~~~~~~g~~i~~~v~~~~~~~~--~----------~~~~~~~a~~~~~~~~~~~ 673 (691)
+..+.......+.+|+++|+.++|++.+..++|+.++..+.....+.. + .+.|+++++++++..++++
T Consensus 421 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (524)
T 2xut_A 421 LVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFA 500 (524)
T ss_dssp HHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988887665421 1 2237888888999988888
Q ss_pred hhhccceecCCCcc
Q psy195 674 LLAMRYKYVEEDED 687 (691)
Q Consensus 674 ~~~~~~~~~~~~~~ 687 (691)
++.++++.++.++.
T Consensus 501 ~~~~~~~~~~~~~~ 514 (524)
T 2xut_A 501 LYARSYQMQDHYRQ 514 (524)
T ss_dssp --------------
T ss_pred HHHHHhccchhhhh
Confidence 88888887665443
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=6.5e-28 Score=269.19 Aligned_cols=443 Identities=24% Similarity=0.370 Sum_probs=306.7
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHh-cCch
Q psy195 14 SEQPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLV-----LLYDEKTATVMFHIWTGLCYFFPLFGGIIADT-YLGK 87 (691)
Q Consensus 14 ~~~~~~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~-----lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr-~lGR 87 (691)
+..++++|.++.+.+..++..++++++..+++.|+++. +|++..+++++.+.+.++..++.+++|+++|| + ||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~ 84 (491)
T 4aps_A 6 KTFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GA 84 (491)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CH
T ss_pred hhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc
Confidence 34567889999999999999999999999999999988 99999999999999999999999999999999 8 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHH
Q psy195 88 FLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSI 167 (691)
Q Consensus 88 kk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~ 167 (691)
|+++.++.++..++.++++.+.. . +.++++|++.|+|.|...++..++++|++| .+.+.|+.++++++.+.
T Consensus 85 r~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~ 155 (491)
T 4aps_A 85 RPAVFWGGVLIMLGHIVLALPFG--A-----SALFGSIILIIIGTGFLKPNVSTLVGTLYD--EHDRRRDAGFSIFVFGI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCS--T-----THHHHHHHHHHHHHHHHHHHHHHHHHHHSS--SCTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhh--H-----HHHHHHHHHHHHHHHhccchHHHHHHHHcC--cccccceeeehHHHHHH
Confidence 99999999999999888776532 2 778899999999999999999999999997 12234888999999999
Q ss_pred HHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHhhcccccccC---CCCC-cchhHHHHHHH-----
Q psy195 168 NAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKINK---PKGN-VALEVFQCTIR----- 238 (691)
Q Consensus 168 nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~~~~~~~~~---~~~~-~~~~i~~vi~~----- 238 (691)
++|..++|.+++++.+ ..+|+..|++.++..++++++++...+++..++ ++.. ...+..+....
T Consensus 156 ~~g~~~~~~~~~~l~~-------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 228 (491)
T 4aps_A 156 NLGAFIAPLIVGAAQE-------AAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAV 228 (491)
T ss_dssp HHHHHHHHHHHHHHHH-------HSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHH
Confidence 9999999999999877 468999999987776666665554443332211 1111 11111110000
Q ss_pred -------HHhhhcccccccccccc--hhhh------cccccCCc--cHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Q psy195 239 -------AIKNKFKTKKSERTKEH--WLDY------ANDKYDQG--TIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTF 301 (691)
Q Consensus 239 -------~i~~~~~~~~~~~~~~~--~l~~------~~~~~~~~--~v~~~k~~l~~l~l~~~~~~~~~~~~q~~s~~~~ 301 (691)
...........++.... .... ....+.+. ...+.++......++....+++..+.+..+.++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (491)
T 4aps_A 229 AGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLAT 308 (491)
T ss_dssp HHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHH
T ss_pred HHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 00000000000000000 0000 00001111 1123444444556666677778888888887777
Q ss_pred HHHH-hcCcccCCceeecchhHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy195 302 QANR-MDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLNRPLRKLTVGGLLAALSFVVSALVEFNIRA 380 (691)
Q Consensus 302 ~~~~-~~~~l~~G~~~i~~~~l~~in~i~iii~~pl~~~~l~p~l~R~~~~s~l~~i~iG~ll~~~s~li~a~v~~~~~~ 380 (691)
+... .+.+. ...+.+...+.+..++..++.++ +.|.++||+. ...+++..|.++.++++++++.......
T Consensus 309 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-l~~r~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 379 (491)
T 4aps_A 309 FAAERVDSSW------FPVSWFQSLNPLFIMLYTPFFAW-LWTAWKKNQP-SSPTKFAVGLMFAGLSFLLMAIPGALYG- 379 (491)
T ss_dssp HHHHSCCCSS------SCSGGGTTHHHHHHHHHHHHHHH-HHHHTTTC----CHHHHHHHHHHHHHHHTTTHHHHHHCC-
T ss_pred HHHHHhccCc------cCHHHHhccchHHHHHHHHHHHH-HHHHHhccCC-CchHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 6654 22221 34677788888888888888885 5666665533 5567778899888888877766552110
Q ss_pred cccCCCCCCceeEEEEecCCCceeEecCCCcccccccccccccccccccccccccccCCCCCCCcccccccceeeeeccC
Q psy195 381 HSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPINGTQHFAALFEPSTSCPYVLNKTFQSSVLGAD 460 (691)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (691)
.
T Consensus 380 -------------------------------------------------------~------------------------ 380 (491)
T 4aps_A 380 -------------------------------------------------------T------------------------ 380 (491)
T ss_dssp -------------------------------------------------------C------------------------
T ss_pred -------------------------------------------------------C------------------------
Confidence 0
Q ss_pred CcceeeeeecchhhhhhcccCcceeeeeccCchhhhhhhhccccccccceeeecCCccccCCCCCCcccceeecCcccce
Q psy195 461 GKITEYYLIRDEKQQAHLKRLGEFHDLRNINSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEGIPAGV 540 (691)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (691)
T Consensus 381 -------------------------------------------------------------------------------- 380 (491)
T 4aps_A 381 -------------------------------------------------------------------------------- 380 (491)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecccchhhhccccccCCceeEEeeccCCCCccccccccccCCCCceeeehhhHHHHHHHHHhHhhcchheeeecccCc
Q psy195 541 YEVRSENKVLKSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEIMFSITGFEFAFTQAP 620 (691)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~w~~pq~~~~~~~ei~~~~~~~ef~~~~aP 620 (691)
+.+.+..|+++.+++.++++.+..+....+..+.+|
T Consensus 381 --------------------------------------------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p 416 (491)
T 4aps_A 381 --------------------------------------------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAP 416 (491)
T ss_dssp --------------------------------------------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTT
T ss_pred --------------------------------------------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC
Confidence 001247889999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhccceecCCC
Q psy195 621 VSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLFASLMVVDMGVFALLAMRYKYVEED 685 (691)
Q Consensus 621 ~~mr~~~~a~~~~~~~~g~~i~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 685 (691)
++.|+.++|++.+...+|+.++..+.+...+......|++++++.++..++++++.++.+.+.++
T Consensus 417 ~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (491)
T 4aps_A 417 KAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGLMQG 481 (491)
T ss_dssp TTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999888776655556678888888888888888888777765433
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.91 E-value=3.1e-24 Score=239.18 Aligned_cols=144 Identities=10% Similarity=0.065 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCC-----------CCchhHHHHHH
Q psy195 56 EKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPL-----------NIPKRTFTLVG 124 (691)
Q Consensus 56 ~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~-----------~~~~~~~l~i~ 124 (691)
..+.|++.+.+.++..++++++|+++||+ |||+++.++.+++.++.++.+++..... ...+...++++
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 132 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY 132 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence 45678899999999999999999999998 9999999999999999988875321000 00011789999
Q ss_pred HHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-cCCCCchhHHHHHHHH
Q psy195 125 LLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQC-FGQEACFPLAFGVPAL 203 (691)
Q Consensus 125 ~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~-~g~~~~w~~~F~i~~~ 203 (691)
|++.|+|.|+..+..+++++|..| +++|++..++.+.+..+|.++++.++..+...... ......|+..+.+..+
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p----~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAP----AHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECI 208 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSC----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCC----HHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhh
Confidence 999999999999999999999777 99999999999999999999998887765432110 0012346666655443
Q ss_pred H
Q psy195 204 L 204 (691)
Q Consensus 204 l 204 (691)
.
T Consensus 209 ~ 209 (491)
T 4gc0_A 209 P 209 (491)
T ss_dssp H
T ss_pred h
Confidence 3
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.87 E-value=2.1e-20 Score=205.13 Aligned_cols=170 Identities=11% Similarity=-0.003 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHH
Q psy195 24 FFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNV 103 (691)
Q Consensus 24 ~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~i 103 (691)
+.+.+..+...+..+...+.++.+ .+++ .+..+.|++.+++.++..++.+++|+++||+ |||+++.++.++..++.+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~ 107 (451)
T 1pw4_A 31 LGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVML 107 (451)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHHHHHH
Confidence 333344444444444444445544 4567 9999999999999999999999999999998 999999999999999998
Q ss_pred HHHH----hhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195 104 LLTV----TAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP 179 (691)
Q Consensus 104 ll~~----s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~ 179 (691)
+.++ +.. . +.++++|++.|++.|...+...++++|.+| +++|++++++.+.+.++|.+++|.+++
T Consensus 108 ~~~~~~~~~~~--~-----~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~----~~~r~~~~~~~~~~~~~g~~~g~~~~~ 176 (451)
T 1pw4_A 108 FMGFVPWATSS--I-----AVMFVLLFLCGWFQGMGWPPCGRTMVHWWS----QKERGGIVSVWNCAHNVGGGIPPLLFL 176 (451)
T ss_dssp HHHHCHHHHSS--S-----SHHHHHHHHHHHHHHHTHHHHHHHHHTTCT----TTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHhhhhcccc--H-----HHHHHHHHHHHHHhhhccchHHHHHHHHCC----chhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877 422 2 678899999999999999999999999887 889999999999999999999999999
Q ss_pred HhhccccccCCCCc-hhHHHHHHHHHHHHHHHHHHh
Q psy195 180 IFRHDMQCFGQEAC-FPLAFGVPALLMFLAIIVFII 214 (691)
Q Consensus 180 ~l~~~~~~~g~~~~-w~~~F~i~~~l~~l~~l~~~~ 214 (691)
++.+ ..+ |+..|++.+++.++..++.+.
T Consensus 177 ~l~~-------~~g~w~~~f~~~~~~~~~~~~~~~~ 205 (451)
T 1pw4_A 177 LGMA-------WFNDWHAALYMPAFCAILVALFAFA 205 (451)
T ss_dssp HHHH-------HTCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHH-------HhccHHHHHHHHHHHHHHHHHHHHh
Confidence 8765 456 999999887766555444433
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.87 E-value=1.5e-19 Score=197.83 Aligned_cols=153 Identities=17% Similarity=0.126 Sum_probs=127.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHH
Q psy195 19 YPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVY 98 (691)
Q Consensus 19 ~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~ 98 (691)
+++.+..+.+..++..+......+.+| ++.+++|++..+.|++.+.+.++..++.+++|+++||+ |||+++.++.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY 101 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHH
Confidence 344555555555555555554444444 46778999999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHHHhh-cCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy195 99 LGGNVLLTVTA-IDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFI 177 (691)
Q Consensus 99 ~ig~ill~~s~-~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i 177 (691)
.++.++..... .+++ +.++++|++.|+|.|...+...++++|.+| +++|++.+++.+.+.++|.+++|.+
T Consensus 102 ~~~~~~~~~~~~~~~~-----~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~~~g~~~g~~~ 172 (438)
T 3o7q_A 102 ALGAALFWPAAEIMNY-----TLFLVGLFIIAAGLGCLETAANPFVTVLGP----ESSGHFRLNLAQTFNSFGAIIAVVF 172 (438)
T ss_dssp HHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHSSC----STTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccH-----HHHHHHHHHHHhhHHHhhhhHHHHHHHHcC----chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988873321 2222 788999999999999999999999999887 8899999999999999999999999
Q ss_pred HHHhh
Q psy195 178 TPIFR 182 (691)
Q Consensus 178 ~~~l~ 182 (691)
++.+.
T Consensus 173 ~~~l~ 177 (438)
T 3o7q_A 173 GQSLI 177 (438)
T ss_dssp TTHHH
T ss_pred HHHHH
Confidence 99887
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.76 E-value=5.1e-18 Score=182.22 Aligned_cols=165 Identities=15% Similarity=0.099 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHH
Q psy195 25 FIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVL 104 (691)
Q Consensus 25 ~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~il 104 (691)
.+.+..++..++.....+.++.+ .+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHH
Confidence 34444555555555555666654 567999999999999999999999999999999998 9999999999999998888
Q ss_pred HHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy195 105 LTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHD 184 (691)
Q Consensus 105 l~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~ 184 (691)
...+... +.++++|++.|++.+...+...+++.|.+| +++|++.+++.+.+.++|..++|.+++++.+
T Consensus 82 ~~~~~~~-------~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~- 149 (375)
T 2gfp_A 82 AVTTSSL-------TVLIAASAMQGMGTGVGGVMARTLPRDLYE----RTQLRHANSLLNMGILVSPLLAPLIGGLLDT- 149 (375)
T ss_dssp HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC-
T ss_pred HHHhccH-------HHHHHHHHHHHHHHHhhhhhHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-
Confidence 7775322 788899999999999999999999999776 7889999999999999999999999998876
Q ss_pred ccccCCCCchhHHHHHHHHHHHHHH
Q psy195 185 MQCFGQEACFPLAFGVPALLMFLAI 209 (691)
Q Consensus 185 ~~~~g~~~~w~~~F~i~~~l~~l~~ 209 (691)
..+|+..|.+.++..++..
T Consensus 150 ------~~~~~~~~~~~~~~~~~~~ 168 (375)
T 2gfp_A 150 ------MWNWRACYLFLLVLCAGVT 168 (375)
T ss_dssp ------HHHHHHHHHHHHHHHHHHH
T ss_pred ------hccHHHHHHHHHHHHHHHH
Confidence 4579999887666554443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.68 E-value=3.7e-17 Score=179.33 Aligned_cols=168 Identities=11% Similarity=0.016 Sum_probs=112.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHH
Q psy195 20 PKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYL 99 (691)
Q Consensus 20 ~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ 99 (691)
.|.++.+....++...++....++++.|+++++|++..++|++.+.+.++..++++++|+++||+ ||||++.++.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~ 84 (417)
T 2cfq_A 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGML 84 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 35566666666666666667778999999988999999999999999999999999999999998 99999998877665
Q ss_pred HHHHHH---HHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy195 100 GGNVLL---TVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTF 176 (691)
Q Consensus 100 ig~ill---~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~ 176 (691)
++...+ ....... ..+..++++.+++.|...+...+...+..+ ..+++++..++..+...++|..++|.
T Consensus 85 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~g~~~~~~ 156 (417)
T 2cfq_A 85 VMFAPFFIFIFGPLLQ------YNILVGSIVGGIYLGFCFNAGAPAVEAFIE--KVSRRSNFEFGRARMFGCVGWALGAS 156 (417)
T ss_dssp SCHHHHHHHTHHHHHH------TTCCHHHHGGGSSTTHHHHTTHHHHHHHHH--HHHHHHTCCHHHHSSSTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HhhhhcccchHHHHHHHHHHHHHHHH
Confidence 432211 1111000 001233333333333332222333333221 11245666777777778999999999
Q ss_pred HHHHhhccccccCCCCchhHHHHHHHHH
Q psy195 177 ITPIFRHDMQCFGQEACFPLAFGVPALL 204 (691)
Q Consensus 177 i~~~l~~~~~~~g~~~~w~~~F~i~~~l 204 (691)
+++++.+ .+|+..|++.++.
T Consensus 157 l~~~l~~--------~~~~~~f~~~~~~ 176 (417)
T 2cfq_A 157 IVGIMFT--------INNQFVFWLGSGC 176 (417)
T ss_dssp HHHHHHH--------HCSHHHHTTTTTT
T ss_pred HHHHHHH--------hchhHHHHHHHHH
Confidence 9998865 3588888765544
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.36 E-value=3.3e-11 Score=131.61 Aligned_cols=177 Identities=13% Similarity=0.096 Sum_probs=143.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcC--chhHHHHHHHHHH
Q psy195 21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYL--GKFLTIVILSIVY 98 (691)
Q Consensus 21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~l--GRkk~i~ig~il~ 98 (691)
+.++.+.+..++...+++++..+++.|+++.+|++..+++.+.+...++..++.+++|+++|| + |||+.+.++.++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 567777777777788888888999999988899999999999999999999999999999999 6 8998888777665
Q ss_pred H-HHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHH-HHHHHHH
Q psy195 99 L-GGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINA-GSLISTF 176 (691)
Q Consensus 99 ~-ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nl-G~~igp~ 176 (691)
. ++.+++......+ .+.+.+..++.|++.+...+...++..|.+| +++|++++++.+...++ |..++|.
T Consensus 331 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~g~~~~~~ 401 (451)
T 1pw4_A 331 VTIATIVYWMNPAGN-----PTVDMICMIVIGFLIYGPVMLIGLHALELAP----KKAAGTAAGFTGLFGYLGGSVAASA 401 (451)
T ss_dssp HHHHHHHTTSCCTTC-----HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSC----TTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccC-----HHHHHHHHHHHHHHHhchHHHHHHHHHHHhc----hhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 5 4444443321101 1566777788899888888888899999887 88899999999999999 9999999
Q ss_pred HHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHh
Q psy195 177 ITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFII 214 (691)
Q Consensus 177 i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~ 214 (691)
+.+++.+ ..+|+..|.+.+++.+++.++.+.
T Consensus 402 ~~g~l~~-------~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 402 IVGYTVD-------FFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHH-------SSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-------hcCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999887 467888888877776666555443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.26 E-value=2.7e-10 Score=124.07 Aligned_cols=166 Identities=14% Similarity=0.072 Sum_probs=130.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHH
Q psy195 21 KAVFFIVINEFCERFCYYGMRTVLSLY-MHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYL 99 (691)
Q Consensus 21 r~~~~l~~~~~~~~~~~y~i~~~l~~y-l~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ 99 (691)
+.++...+..++....++++..+++.| +++.+|++..+++.+.+...++..++.+++|+++||+ |||+++.++.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 456666666666677777888899999 8888899999999999999999999999999999997 99999999988887
Q ss_pred HHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195 100 GGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP 179 (691)
Q Consensus 100 ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~ 179 (691)
++.+++..... ....+..++.|++.+...+...++..|.+| ++ ++.+.++.. ...+|+.++|.+.+
T Consensus 337 ~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~-~~~~g~~~~~~~~g 402 (438)
T 3o7q_A 337 ALCLISAFAGG--------HVGLIALTLCSAFMSIQYPTIFSLGIKNLG----QD-TKYGSSFIV-MTIIGGGIVTPVMG 402 (438)
T ss_dssp HHHHHHHHCCH--------HHHHHHHHHHHHHHTTHHHHHHHHHHSSCG----GG-HHHHHHHHH-HTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--------cHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----cc-ccchhhHHH-HHHHHHHHHHHHHH
Confidence 77776665422 233445578889999999999999899886 33 666666655 56689999999999
Q ss_pred HhhccccccCCCCc-hhHHHHHHHHHHHHH
Q psy195 180 IFRHDMQCFGQEAC-FPLAFGVPALLMFLA 208 (691)
Q Consensus 180 ~l~~~~~~~g~~~~-w~~~F~i~~~l~~l~ 208 (691)
++.+ ..+ ++..|.+.++..++.
T Consensus 403 ~l~~-------~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 403 FVSD-------AAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHHH-------HHTSSGGGGHHHHHHHHHH
T ss_pred HHHH-------HhcchHHHHHHHHHHHHHH
Confidence 9877 345 787887765544433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.16 E-value=4.6e-10 Score=122.69 Aligned_cols=173 Identities=9% Similarity=0.039 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHH
Q psy195 22 AVFFIVINEFCERFCYYGMRTVLSLYMHLVLLY---DEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVY 98 (691)
Q Consensus 22 ~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~---s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~ 98 (691)
.++...+..+.....++.....++.|+.+.++. +....+...++..++..++.+++|+++||+ |||+++.++.++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~ 299 (417)
T 2cfq_A 221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIM 299 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHH
Confidence 344444333333344445556688888766553 234456677777778888999999999998 9999998888777
Q ss_pred HHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHH-HHHHHHHHHHHHHHH
Q psy195 99 LGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSL-FYFSINAGSLISTFI 177 (691)
Q Consensus 99 ~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~-~~~~~nlG~~igp~i 177 (691)
.++.+++..... . ..+++..++.+++.+...+....+.+|.+| ++.|++..++ ++....+|++++|.+
T Consensus 300 ~~~~~~~~~~~~--~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p----~~~~g~~~g~~~~~~~~lg~~~gp~l 368 (417)
T 2cfq_A 300 SVRIIGSSFATS--A-----LEVVILKTLHMFEVPFLLVGCFKYITSQFE----VRFSATIYLVCFCFFKQLAMIFMSVL 368 (417)
T ss_dssp HHHHHHHTTCCS--H-----HHHHHHTTHHHHHHHHHHHHHHHHHHHHSC----HHHHHHHHHHHHTTTHHHHHHHHTHH
T ss_pred HHHHHHHHHhcc--H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHhHHHHHhhhh
Confidence 666555443211 1 455666667777777777777889999887 8899999888 467778999999999
Q ss_pred HHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHH
Q psy195 178 TPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFI 213 (691)
Q Consensus 178 ~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~ 213 (691)
++++.+ ..++...|.+.+++.+++.++.+
T Consensus 369 ~G~l~~-------~~g~~~~f~~~~~~~l~~~~~~~ 397 (417)
T 2cfq_A 369 AGNMYE-------SIGFQGAYLVLGLVALGFTLISV 397 (417)
T ss_dssp HHTHHH-------HSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-------hcCcHHHHHHHHHHHHHHHHHHH
Confidence 998876 35678888877776666655443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.93 E-value=2.2e-09 Score=119.02 Aligned_cols=182 Identities=11% Similarity=0.003 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHH-----HHHHH
Q psy195 23 VFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIV-----ILSIV 97 (691)
Q Consensus 23 ~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~-----ig~il 97 (691)
.+.+++..++....+......++.|+.+.++.+...++.+.....++..++.++.|+++||+ |||+... ++.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 33444444444555556667788999888888877778888888899999999999999997 9986554 66666
Q ss_pred HHHHHHHHHHhhcC-CCCCc-hhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q psy195 98 YLGGNVLLTVTAID-PLNIP-KRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLIST 175 (691)
Q Consensus 98 ~~ig~ill~~s~~~-~~~~~-~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp 175 (691)
..++.+++...... ..... ....+.++.++.|++.+...+...++..|.+| ++.|+.+.++.+...++|.++++
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p----~~~~g~~~g~~~~~~~~g~~i~~ 439 (491)
T 4aps_A 364 AGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAP----KAFNSQMMSMWFLSSSVGSALNA 439 (491)
T ss_dssp HHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTT----TTCSSSSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555443200 00000 11667778888999999999999999999887 88899999999999999999999
Q ss_pred HHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHhhcc
Q psy195 176 FITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKP 217 (691)
Q Consensus 176 ~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~~~ 217 (691)
.+.+++.+ .++...|.+.+++.+++.++.+...+
T Consensus 440 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 440 QLVTLYNA--------KSEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp HHGGGGGG--------SSTTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHHhc--------ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888765 24555666666665555555544433
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.76 E-value=4.1e-07 Score=100.50 Aligned_cols=174 Identities=11% Similarity=0.050 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy195 34 RFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPL 113 (691)
Q Consensus 34 ~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~ 113 (691)
..+++.+. ....++.+..+.+............+...++.++++++.||+ |||+.++.+.....++.+.+........
T Consensus 290 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~~l~~~~~~~~ 367 (491)
T 4gc0_A 290 FVGINVVL-YYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQA 367 (491)
T ss_dssp HTCHHHHH-HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HhhhhHHH-hcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHHHHHHHHhccc
Confidence 33344443 344455567888888888888888899999999999999998 9999999998887777766654421110
Q ss_pred CCchhHHHHHHHHHHHHHhh-chhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCC
Q psy195 114 NIPKRTFTLVGLLLIAVGTG-GIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEA 192 (691)
Q Consensus 114 ~~~~~~~l~i~~~l~gig~G-~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~ 192 (691)
.. ....+..++...+.+ ...+....+.+|.|| .+.|+.+.++......+|+++++.+.+.+.+...... ..
T Consensus 368 --~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fP----t~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~-~~ 439 (491)
T 4gc0_A 368 --PG-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFP----NAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA-HF 439 (491)
T ss_dssp --CH-HHHHHHHHHHHHHHHTTTTHHHHHHHHHSSC----TTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH-HH
T ss_pred --ch-HHHHHHHHHHHHHHHhHHHHHHHHHHHHhCC----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hh
Confidence 01 222222222222222 234666789999998 8899999999999999999999888776643100000 12
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcc
Q psy195 193 CFPLAFGVPALLMFLAIIVFIIGKP 217 (691)
Q Consensus 193 ~w~~~F~i~~~l~~l~~l~~~~~~~ 217 (691)
++...|++.+++.+++.++.++..|
T Consensus 440 ~~~~~~~i~~~~~~~~~i~~~~~~P 464 (491)
T 4gc0_A 440 HNGFSYWIYGCMGVLAALFMWKFVP 464 (491)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHheec
Confidence 3445666666666666655544443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.55 E-value=2.9e-08 Score=105.84 Aligned_cols=161 Identities=15% Similarity=0.089 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHH-HH
Q psy195 21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIV-YL 99 (691)
Q Consensus 21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il-~~ 99 (691)
|.++...+..++...++++...+++.|+++.+|++..+++.+.+...++..++.++.|+++||+ ||+ +.++..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 4566666666777777778888889999888999999999999999999999999999999997 873 2333332 22
Q ss_pred HHHHH--HHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy195 100 GGNVL--LTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFI 177 (691)
Q Consensus 100 ig~il--l~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i 177 (691)
++..+ ......++. +.+++..++.|++.+...+...++..|.+ | ++|++..+..+...++|..++|.+
T Consensus 276 ~~~~~~~~~~~~~~~~-----~~~~~~~~l~g~~~~~~~~~~~~~~~~~~----p-~~~g~~~g~~~~~~~~g~~~~~~~ 345 (375)
T 2gfp_A 276 AGLLMWIPDWFGVMNV-----WTLLVPAALFFFGAGMLFPLATSGAMEPF----P-FLAGTAGALVGGLQNIGSGVLASL 345 (375)
T ss_dssp TSSSSSHHHHHHHHHH-----HHHHHHHHHHHHHHHHTSSTTHHHHHTHH----H-HHHHHHHHHHHHHHHHHHHCCSTT
T ss_pred HHHHHHHHhhhccccH-----HHHHHHHHHHHHHHHHhhHHHHHHHHHhC----C-cccchHHHHHHHHHHHHHHHHHHH
Confidence 22221 111000000 55667778889999999999999999955 3 689999999999999999999999
Q ss_pred HHHhhccccccCCCCchhHHHHHH
Q psy195 178 TPIFRHDMQCFGQEACFPLAFGVP 201 (691)
Q Consensus 178 ~~~l~~~~~~~g~~~~w~~~F~i~ 201 (691)
.+.+.+ ..+|...+.+.
T Consensus 346 ~g~l~~-------~~~~~~~~~~~ 362 (375)
T 2gfp_A 346 SAMLPQ-------TGQGSLGLLMT 362 (375)
T ss_dssp CTHHHH-------HHHHHHHHHHH
T ss_pred HHHHhc-------CCcccHHHHHH
Confidence 888765 34566666553
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.72 E-value=1.1e-05 Score=89.84 Aligned_cols=120 Identities=11% Similarity=0.077 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHh----HhcCch----hHHHHHHHHHHHHHHHHHHHhhcC-CC-CCchhHHHHHHHHHH
Q psy195 59 ATVMFHIWTGLCYFFPLFGGIIA----DTYLGK----FLTIVILSIVYLGGNVLLTVTAID-PL-NIPKRTFTLVGLLLI 128 (691)
Q Consensus 59 ag~i~~~~~i~~~i~~l~~G~La----Dr~lGR----kk~i~ig~il~~ig~ill~~s~~~-~~-~~~~~~~l~i~~~l~ 128 (691)
.+.+.....++..++.++.|++. ||. || ++.+.++.++..++.+++...... .. ...+.+.+.++.++.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERM-GVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 44444444445555555555543 443 43 345666766666666555432100 00 000116677788899
Q ss_pred HHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy195 129 AVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRH 183 (691)
Q Consensus 129 gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~ 183 (691)
|++.+...+...++..|..| ++.|+++.++.+...++|..++|.+.+.+.+
T Consensus 416 g~~~~~~~~~~~~~~~~~~p----~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAP----KAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCC----TTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhCc----HHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999887 8889999999999999999999999998765
Done!