RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy195
(691 letters)
>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam
antibiotics, the antitumor agent, bestatin, and various
protease inhibitors). [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 641
Score = 520 bits (1341), Expect = e-177
Identities = 260/663 (39%), Positives = 365/663 (55%), Gaps = 40/663 (6%)
Query: 35 FCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVIL 94
F YYGM+T+L LY+ L ++E TAT ++H +T LCY PL G +IAD++LGKF TI+ L
Sbjct: 1 FSYYGMKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYL 60
Query: 95 SIVYLGGNVLLTVTAIDPLNIPKRT-FTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQS 153
S+VY+ G+ L ++ A+ L P +LVGL LIA+GTGGIKPCVS+FGGDQF Q
Sbjct: 61 SLVYVVGHALASLGAVPSLGHPLHDALSLVGLALIALGTGGIKPCVSAFGGDQF-EERQL 119
Query: 154 AQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFI 213
+ +FFS FYF+INAGSL ST ITPI R D+ CFG + CFPLAFGVP +LM LA+IVF
Sbjct: 120 SLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVPGILMTLALIVFS 179
Query: 214 IGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTKEHWLDYANDKYDQGTIEDIK 273
+G MYK P GN+ +V +C + A+K +F+T+ + + HWLD+A KY I K
Sbjct: 180 MGSKMYKKKPPVGNIVSKVMKCIVFALKKRFRTRSEDWPRLHWLDWAAPKYLIRMIRSTK 239
Query: 274 TLLRILLLFVPLPIFWALFDQQGSRWTFQANRMDGRVFGTSLEIKPDQMQLINPLLILTF 333
LLR+L LF+PLP+FWALFDQQGSRWT QA RMDG V I+PDQMQ +NPLL+L
Sbjct: 240 RLLRVLFLFIPLPMFWALFDQQGSRWTLQATRMDGDVGL--FPIQPDQMQAVNPLLVLIL 297
Query: 334 IPLFQYVIYPLVDKCGLN-RPLRKLTVGGLLAALSFVVSALVEFNIR--AHSQIAPQDRH 390
+P+F YV+YP + KCG LRK+ VG LLAAL+F V+AL++ I + +
Sbjct: 298 VPIFDYVVYPALAKCGTRFTSLRKMAVGMLLAALAFAVAALLQNKINPTLPEEPSASIIF 357
Query: 391 FSLRIYNSMDCDFVFHS----PLKNERVLRAMDMLALNNIPINGTQHFAALFEPSTSCPY 446
+ + S P L + N+ + A +
Sbjct: 358 LQVLNTDCTITVVSGISKRVLPHDVYLHLDKKNTSGDQNLFTTKSS--AKACGDTGKLES 415
Query: 447 VLNKT----FQSSVLGADGKITEYYLIRDEKQQAHLKRLGEFHD--LRNINSSLKMQILY 500
++ VL + + D+ A EF +R +N+ ++
Sbjct: 416 TVDAHEVEKKIIYVLLGSQGYYQLTAVTDKPTDAK----TEFGMGIVRLVNTLNGGAMIS 471
Query: 501 GSEL----QGKRITLESDDGFYQDIDLPTGACYTEYIEGIPAGVYEVRSENKVLKSNMEL 556
S D +++ P+ C +L
Sbjct: 472 LSTSDFDSVHPCNPRSPYDFYFRGTKYPSHTCDRI-------------DNATSTDLLSQL 518
Query: 557 QDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEIMFSITGFEFAF 616
Y+ + + + ++++D N VS+LW PQY++ TA E+MFS+TG EF++
Sbjct: 519 DFGIYYLTVITENPTIDGLQLQIVEDVPVNTVSILWQLPQYVLATAGEVMFSVTGLEFSY 578
Query: 617 TQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLFASLMVVDMGVFALLA 676
+QAP +MKS + A WLLT A GN+IV I+AE + Q EF+LF+SLM+V M +F++LA
Sbjct: 579 SQAPPNMKSVLQALWLLTVAIGNIIVLIIAEFENMAVQWAEFVLFSSLMLVVMAIFSILA 638
Query: 677 MRY 679
Y
Sbjct: 639 YTY 641
>gnl|CDD|216153 pfam00854, PTR2, POT family. The POT (proton-dependent
oligopeptide transport) family all appear to be proton
dependent transporters.
Length = 372
Score = 260 bits (666), Expect = 2e-80
Identities = 121/294 (41%), Positives = 163/294 (55%), Gaps = 15/294 (5%)
Query: 88 FLTIVILSIVYLGGNVLLTVTAIDPLNIPKR-TFTLVGLLLIAVGTGGIKPCVSSFGGDQ 146
F TI++ SI+Y G+VLLT+ AI P P + +GL LIA+GTGGIKP VS+FG DQ
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGAIPPSLSPVQVALFYIGLYLIALGTGGIKPNVSAFGADQ 60
Query: 147 FIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMF 206
F Q + + FFS FYFSINAGSLI+T ITP + Q +PL FG+PA+ M
Sbjct: 61 F-DETQDPRRDGFFSWFYFSINAGSLIATIITPYLQ-------QNVGYPLGFGLPAVGML 112
Query: 207 LAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTK-EHWLDYANDKYD 265
LA++VF++G YK P G V I K +K + K HWL +A +KY+
Sbjct: 113 LALLVFLLGSRRYKKKAPPGGSPFTVC--IAFIITAAGKNRKLQLPKDSHWLYWALEKYN 170
Query: 266 QGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRMDGRVFGTSLEIKPDQMQLI 325
+ +I K R+ ++F+PLP FWALFDQQGS W QA + ++ I PDQM
Sbjct: 171 KRSISQTKVHTRVAVIFIPLPKFWALFDQQGSVWLLQAILLMLPIWAF--WILPDQMWTQ 228
Query: 326 NPLLILTFIPLFQYVIYPLVDKCGLN-RPLRKLTVGGLLAALSFVVSALVEFNI 378
LI+ +P +IYPL + + + L V LL L F+V L+
Sbjct: 229 LATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDFLVYPLLRLKR 282
Score = 38.1 bits (89), Expect = 0.013
Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 8/68 (11%)
Query: 576 TARLLKDDSSNKVSMLWLFPQYIIITAAEIMFSITGF----EFAFTQAPVSMKSAVSACW 631
R + S W P +I+ + E+ S G EFA P SM S W
Sbjct: 309 AKRPRYAAALGLTSPGWTVPLFILWSLPELFISGVGLAGALEFAPDALPSSMMSL----W 364
Query: 632 LLTTAFGN 639
L +A
Sbjct: 365 TLLSAAAA 372
>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport
and metabolism].
Length = 498
Score = 242 bits (619), Expect = 3e-72
Identities = 107/393 (27%), Positives = 179/393 (45%), Gaps = 39/393 (9%)
Query: 17 PKYPKAVFFIVINEFCERFCYYGMRTVLSLYMH----LVLLYDEKTATVMFHIWTGLCYF 72
P+ ++ I E ERF YYGMR +L LY++ L +DE AT +F + L Y
Sbjct: 17 FGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYL 76
Query: 73 FPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGT 132
P+ GG +AD LG TIV+ +I+ G+++L ++++ +GL LI VGT
Sbjct: 77 TPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSV-----SGPGGLYIGLALIIVGT 131
Query: 133 GGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEA 192
G KP +SS G+ + P+ + + F+LFY IN GSLI+ IT +
Sbjct: 132 GLFKPNISSLLGELY--PKDDPRRDGGFTLFYMGINIGSLIAPIITGLL-------AINY 182
Query: 193 CFPLAFGVPALLMFLAIIVFIIGKPMYK----INKPKG-------NVALEVFQCTIRAI- 240
+ + FG+ A+ M + +++F++G+ K + P V + + A+
Sbjct: 183 GWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALL 242
Query: 241 -----KNKFKTKKSERTKEHWLDYANDKYDQ-GTIEDIKTLLRILLLFVPLPIFWALFDQ 294
+N F + + Y + + ++ + LL + LF+ IFWAL++Q
Sbjct: 243 TLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQ 302
Query: 295 QGSRWTFQANRM-DGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLNRP 353
GS A+R + ++FG E+ P Q +NP I+ F P+ + L
Sbjct: 303 MGSSLNLYADRNVNRQIFGF--EVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPST 360
Query: 354 LRKLTVGGLLAALSFVVSALVEFNIRAHSQIAP 386
K +G +LA L F++ L S +
Sbjct: 361 PIKFALGLILAGLGFLILLLAGIWFGGPSGLVS 393
Score = 72.3 bits (178), Expect = 3e-13
Identities = 22/70 (31%), Positives = 32/70 (45%)
Query: 577 ARLLKDDSSNKVSMLWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTA 636
A + S VS+ WL Y++ + E+ S G AP ++KS + A W LT A
Sbjct: 381 AGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVA 440
Query: 637 FGNLIVAIVA 646
G + VA
Sbjct: 441 AGQTLGGQVA 450
>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter
(Peptide:H+ symporter), bacterial. The model describes
proton-dependent oligopeptide transporters in bacteria.
This model is restricted in its range in recognizing
bacterial proton-dependent oligopeptide transporters,
although they are found in yeast, plants and animals.
They function by proton symport in a 1:1 stoichiometry,
which is variable in different species. All of them are
predicted to contain 12 transmembrane domains, for which
limited experimental evidence exists [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 475
Score = 93.7 bits (233), Expect = 4e-20
Identities = 90/383 (23%), Positives = 154/383 (40%), Gaps = 52/383 (13%)
Query: 19 YPKAVFFIVINEFCERFCYYGMRTVLSLYMH--LVLLYDEKTATVMFHIWTGLCYFFPLF 76
+PK +F + E ERF YYGM+ +L++Y+ L + ++ A ++F ++ L Y
Sbjct: 8 HPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSV 67
Query: 77 GGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIK 136
G D G T+V+ IV + G+ +L + +I P I GL IAVG+G K
Sbjct: 68 GWWFGDRVWGTKKTMVLGGIVLMLGHFMLAM-SIYPDLI------FYGLGTIAVGSGLFK 120
Query: 137 PCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPL 196
SS G + + + + F+LFY SIN GS IS + + + + +
Sbjct: 121 ANPSSMVGKLYERGDM-PRRDGGFTLFYMSINIGSFISPLLAGV-------IAENYGYHV 172
Query: 197 AFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTKEHW 256
F + A+ M + ++ F G+ M + + L T + + W
Sbjct: 173 GFNLAAVGMVIGLLTFFAGRHMLR-DIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAW 231
Query: 257 LDYANDKYDQGTIEDIKTLLRILLLF------------------VPLPIF------WALF 292
L + I + L +++ F + +F W L+
Sbjct: 232 LMHHV---VIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLY 288
Query: 293 DQQGSRWTFQA-NRMDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCG-- 349
Q + F A N M + G S + Q +NP ++ P+ +I+ + + G
Sbjct: 289 AQMPTSLNFFADNNMHHEMLGMS--VPVIWFQSLNPFWVVVGSPVLA-MIWTRLGRKGKD 345
Query: 350 LNRPLRKLTVGGLLAALSFVVSA 372
PL K T+G L SF+ A
Sbjct: 346 PTTPL-KFTLGMLFCGASFLTFA 367
Score = 39.0 bits (91), Expect = 0.008
Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 2/102 (1%)
Query: 583 DSSNKVSMLWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIV 642
D+ S ++ Y+ T E+M S G + AP + + W L A G+L+
Sbjct: 374 DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLG 433
Query: 643 AIVAEAKIFENQAYEFLLFASLMVVDMGVFALLAMRYKYVEE 684
+A F + +V + V ++A+ ++
Sbjct: 434 GYLATFGAVPQGVTGV--FGKIGLVTLLVGVVMALMVPWLNR 473
>gnl|CDD|181969 PRK09584, tppB, putative tripeptide transporter permease; Reviewed.
Length = 500
Score = 91.0 bits (226), Expect = 3e-19
Identities = 94/386 (24%), Positives = 159/386 (41%), Gaps = 70/386 (18%)
Query: 18 KYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFG 77
K PKA + I E ERF YYG++ ++++Y+ L E + +F ++ L Y G
Sbjct: 18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIG 77
Query: 78 GIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKP 137
G + D LG I++ +IV G L+ + D +G+ IAVG G K
Sbjct: 78 GWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDA------GIVYMGMATIAVGNGLFKA 131
Query: 138 CVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP------------------ 179
SS + +L+ F+++Y SIN GS S TP
Sbjct: 132 NPSSLLST--CYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVG 189
Query: 180 ---------IFRHDMQCFGQEACF-PLAFGVPALLMFLAIIVFIIGKPMYKI-NKPKGNV 228
+ ++ +G + F P+ + LL+ + +V +I + + N+ +
Sbjct: 190 MLITVVNFAFCQRWVKQYGSKPDFEPINYR--KLLLTIVGVVALIAIATWLLHNQEIARM 247
Query: 229 ALEVFQCTIRAI--KNKFKTKKSERTKEHWLDYANDKYDQGTIEDIKTLLRILLLFVPLP 286
AL V I I K F K + R K ++ +L +
Sbjct: 248 ALGVVALGIVVIFGKEAFAMKGAARRK---------------------MIVAFILMLEAI 286
Query: 287 IFWALFDQQGSRWTFQANR-MDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLV 345
IF+ L+ Q + F A R ++ + G ++E P+Q Q +NP I+ P+ IY
Sbjct: 287 IFFVLYSQMPTSLNFFAIRNVEHSILGIAVE--PEQYQALNPFWIMIGSPILA-AIY--- 340
Query: 346 DKCGLNRPL-RKLTVGGLLAALSFVV 370
+K G P+ K +G +L + +F+V
Sbjct: 341 NKMGDRLPMPHKFAIGMVLCSGAFLV 366
Score = 29.7 bits (67), Expect = 6.7
Identities = 19/59 (32%), Positives = 25/59 (42%)
Query: 588 VSMLWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVA 646
VS+ WL Y + + E+M S G P + + W LTTA LI VA
Sbjct: 380 VSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVA 438
>gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional.
Length = 493
Score = 84.6 bits (209), Expect = 4e-17
Identities = 61/206 (29%), Positives = 105/206 (50%), Gaps = 18/206 (8%)
Query: 10 MLSPSEQPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGL 69
M + QP+ A++++V + E F +YGMR +L LY+ L YD+ A +F + L
Sbjct: 1 MNKHASQPR---AIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSL 57
Query: 70 CYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIA 129
Y P+ GG +AD LG + +++ +++ G+V+L + I P +F + L +I
Sbjct: 58 VYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHP------SFLYLSLAIIV 111
Query: 130 VGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFG 189
G G K VS G+ + P + + FSL Y + N GS+I+ PI Q
Sbjct: 112 CGYGLFKSNVSCLLGELY-EPTDPRR-DGGFSLMYAAGNVGSIIA----PIACGYAQ--- 162
Query: 190 QEACFPLAFGVPALLMFLAIIVFIIG 215
+E + + FG+ A+ M +++F+ G
Sbjct: 163 EEYSWAMGFGLAAVGMIAGLVIFLCG 188
>gnl|CDD|182306 PRK10207, PRK10207, dipeptide/tripeptide permease B; Provisional.
Length = 489
Score = 74.5 bits (183), Expect = 7e-14
Identities = 98/389 (25%), Positives = 160/389 (41%), Gaps = 73/389 (18%)
Query: 20 PKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGI 79
P+ F I E ERF YYG++ +L+++ L + ++ A + F + L Y GG
Sbjct: 13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGY 72
Query: 80 IADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCV 139
+ D LG TIV+ +IV G + ++ + P + L IAVG G K
Sbjct: 73 VGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKP------DLIFIALGTIAVGNGLFKANP 126
Query: 140 SSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIF------------------ 181
+S + P + +L+ F+LFY SIN GSLIS + P+
Sbjct: 127 ASLLSKCY--PPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLI 184
Query: 182 ---------RHDMQCFGQEACF-PLAFGVPALLMFLA---IIVFIIGKPMYKINKPKGNV 228
R ++ G E P++F LL+ L +++F+ M+ N N+
Sbjct: 185 IALLVYFACRGMVKDIGSEPDHKPMSFS--KLLLVLLGSVVMIFVCAWLMH--NVEVANL 240
Query: 229 ALEVFQCTIRAI--KNKFKTKKSERTKEHWLDYANDKYDQGTIEDIKTLLRILLLFVPLP 286
L V + I + FK K+ R K + +L +
Sbjct: 241 VLIVLSIVVTIIFFREAFKLDKTGRNK---------------------MFVAFVLMLEAV 279
Query: 287 IFWALFDQQGSRWTFQA-NRMDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLV 345
+F+ L+ Q + F A N + + G S I P Q +NP ++ P+ IY +
Sbjct: 280 VFYILYAQMPTSLNFFAINNVHHEILGFS--INPVSFQALNPFWVVVASPILA-GIYTHL 336
Query: 346 DKCG--LNRPLRKLTVGGLLAALSFVVSA 372
G L+ P+ K T+G L +L F+ +A
Sbjct: 337 GSKGKDLSMPM-KFTLGMFLCSLGFLTAA 364
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 49.2 bits (118), Expect = 4e-06
Identities = 27/195 (13%), Positives = 68/195 (34%), Gaps = 20/195 (10%)
Query: 23 VFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIAD 82
+ + + F + L L + L + ++ ++ L G ++D
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVS-AFSLGYALGSLLAGYLSD 59
Query: 83 TYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSF 142
+ G+ +++ +++ G++LL LVG L+ +G G + P ++
Sbjct: 60 RF-GRRRVLLLGLLLFALGSLLLAFA-------SSLWLLLVGRFLLGLGGGALYPAAAAL 111
Query: 143 GGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPA 202
+ F + + LF G+L+ + + + + F + A
Sbjct: 112 IAEWF----PPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG-------WRWLFLILA 160
Query: 203 LLMFLAIIVFIIGKP 217
+L L ++ +
Sbjct: 161 ILGLLLALLLLFLLR 175
Score = 46.2 bits (110), Expect = 3e-05
Identities = 42/197 (21%), Positives = 74/197 (37%), Gaps = 20/197 (10%)
Query: 19 YPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFF-PLFG 77
+ + + + F F YYG+ T L LY+ VL A ++ GL L G
Sbjct: 173 LLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLL-SLFGLGGILGALLG 231
Query: 78 GIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKP 137
G+++D + L ++I ++ G +LL + P LV LLL+ G G P
Sbjct: 232 GLLSDRLGRRRLLLLIGLLLAALGLLLLALA-------PSLALLLVALLLLGFGLGFAFP 284
Query: 138 CVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLA 197
+ + + PE LF + G + + + +
Sbjct: 285 ALLTLASELA-PPEARGTA---SGLFNTFGSLGGALGPLLAGLLLDTG-------GYGGV 333
Query: 198 FGVPALLMFLAIIVFII 214
F + A L LA ++ ++
Sbjct: 334 FLILAALALLAALLLLL 350
>gnl|CDD|240973 cd12529, RRM2_MEI2_like, RNA recognition motif 2 in plant Mei2-like
proteins. This subgroup corresponds to the RRM2 of
Mei2-like proteins that represent an ancient eukaryotic
RNA-binding proteins family. Their corresponding
Mei2-like genes appear to have arisen early in eukaryote
evolution, been lost from some lineages such as
Saccharomyces cerevisiae and metazoans, and diversified
in the plant lineage. The plant Mei2-like genes may
function in cell fate specification during development,
rather than as stimulators of meiosis. Members in this
family contain three RNA recognition motifs (RRMs), also
termed RBDs (RNA binding domains) or RNPs
(ribonucleoprotein domains). The C-terminal RRM (RRM3)
is unique to Mei2-like proteins and is highly conserved
between plants and fungi. To date, the intracellular
localization, RNA target(s), cellular interactions and
phosphorylation states of Mei2-like proteins in plants
remain unclear. .
Length = 71
Score = 34.0 bits (78), Expect = 0.021
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 6/57 (10%)
Query: 456 VLGADGKITEYYLIRDEKQQAHLKRLGEFHDLRNINSSLKMQILYGSELQGKRITLE 512
+ GA G+I E IR+ + H K + EF+D+R+ ++LK L SE+ GKRI LE
Sbjct: 21 IFGAYGEIKE---IRETPNKRHHKFI-EFYDVRSAEAALKA--LNRSEIAGKRIKLE 71
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 35.9 bits (83), Expect = 0.069
Identities = 27/153 (17%), Positives = 57/153 (37%), Gaps = 10/153 (6%)
Query: 23 VFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIAD 82
V ++++ F ++ + T L LY VL A ++ + L L G ++D
Sbjct: 204 VLWLLLALLLFGFAFFALLTYLPLY-QEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSD 262
Query: 83 TYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSF 142
+ ++ L ++ +L + + LV LLL+ G G + P +++
Sbjct: 263 RLGRRRRLLLALLLL-----ILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNAL 317
Query: 143 GGDQFIVPEQSAQLEKFFSLFYFSINAGSLIST 175
D E+ L+ + + G +
Sbjct: 318 VSDLAPKEERGT----ASGLYNTAGSLGGALGP 346
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 31.9 bits (73), Expect = 1.2
Identities = 28/170 (16%), Positives = 54/170 (31%), Gaps = 25/170 (14%)
Query: 18 KYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFG 77
K+ K + +Y + T L Y+ L +A ++ + L +
Sbjct: 216 KHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLS 275
Query: 78 GIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLN--IPKRTFTLVGLLLIAVGTGGI 135
G ++D + V + VL + A+ L + +FTL L++ +
Sbjct: 276 GALSDRIGRR--------PVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGM----- 322
Query: 136 KPCVSSFGGDQFIVPEQSAQLEKF-----FSLFYFSINAGSLISTFITPI 180
+ G + P S E F ++ + N I P
Sbjct: 323 -----ALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPY 367
>gnl|CDD|153430 cd08003, WGR_PARP2_like, WGR domain of poly(ADP-ribose)
polymerases. The WGR domain is found in a variety of
eukaryotic poly(ADP-ribose) polymerases (PARPs). It has
been called WGR after the most conserved central motif
of the domain. The domain typically occurs together with
a catalytic PARP domain, and is between 70 and 80
residues in length. It has been proposed to function as
a nucleic acid binding domain. PARPs catalyze the
NAD(+)-dependent synthesis of ADP-ribose polymers and
their addition to various nuclear proteins. Higher
eukaryotes contain several PARPs and and there may be up
to 17 human PARP-like proteins, with three of them
(PARP-1, PARP-2, and PARP-3) containing a WGR domain.
The synthesis of poly-ADP-ribose requires multiple
enzymatic activities for initiation,
trans-ADP-ribosylation, elongation, branching, and
release of the polymer from the enzyme. This subfamily
is composed of human PARP-2 and similar proteins.
Similar to PARP-1, PARP-2 is ubiquitously expressed and
its activity is induced by DNA strand breaks. It also
plays a role in cell differentiation, cell death, and
maintaining genomic stability. Studies on mice deficient
with PARP-2 shows that it is important in fat storage, T
cell maturation, and spermatogenesis.
Length = 103
Score = 29.2 bits (66), Expect = 2.3
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 225 KGNVALEVFQCTIRAIKNKFKTKKSERTKEHWLDYAN-----DKYDQ 266
KG +L + K+ F+ K ++TK W D AN KYD
Sbjct: 52 KGQSSLVPCGSDLEQAKSLFEKKFLDKTKNEWEDRANFEKVAGKYDL 98
>gnl|CDD|239060 cd02146, NfsA_FRP, This family contains NADPH-dependent flavin
reductase and oxygen-insensitive nitroreductase. These
enzymes are homodimeric flavoproteins that contain one
FMN per monomer as a cofactor. Flavin reductase
catalyzes the reduction of flavin by using NADPH as an
electron donor. Oxygen-insensitive nitroreductase, such
as NfsA protein in Escherichia coli, catalyzes reduction
of nitrocompounds using NADPH as electron donor.
Length = 229
Score = 30.2 bits (69), Expect = 2.5
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 94 LSIVYLGG--NVLLTVTAIDPLNIPKRTFTLVGLLL-IAVGTGGIKP 137
L IVY+GG N V I+ LN+P+ F + GL + +KP
Sbjct: 126 LGIVYIGGIRNDPEAV--IELLNLPEYVFPVFGLAVGYPDQEPPLKP 170
>gnl|CDD|237681 PRK14342, PRK14342, lipoate-protein ligase B; Provisional.
Length = 213
Score = 30.2 bits (69), Expect = 2.5
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 338 QYVIYPLVDKCGLNRPLRKLTVGGLLAAL-SFVVSALVEFNIRAH 381
Q V+Y L+D L R KL V L+ A+ V++ L E+ I AH
Sbjct: 82 QLVMYVLLD---LKR--LKLGVRQLVTAIEQTVINTLAEYGIEAH 121
>gnl|CDD|217954 pfam04191, PEMT, Phospholipid methyltransferase. The S. cerevisiae
phospholipid methyltransferase (EC:2.1.1.16) has a broad
substrate specificity of unsaturated phospholipids.
Length = 106
Score = 28.7 bits (65), Expect = 3.7
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 16/98 (16%)
Query: 119 TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLF--YFSINAGSLISTF 176
++GLLLIA+G + +SSF L F + + +F I L++
Sbjct: 1 LRFILGLLLIALGIWLV---LSSF-----------RALGIFGTFYGDFFGILMDELVTGG 46
Query: 177 ITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFII 214
R+ M LA + L ++ +
Sbjct: 47 PYRYLRNPMYVGSTLGFLGLALITGSPAGLLLALLVFL 84
>gnl|CDD|223398 COG0321, LipB, Lipoate-protein ligase B [Coenzyme metabolism].
Length = 221
Score = 29.5 bits (67), Expect = 4.3
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 338 QYVIYPLVDKCGLNRPLRKLTVGGLLAAL-SFVVSALVEFNIRAH 381
Q V YP++D L RP KL V + AL V++ L E+ I A
Sbjct: 88 QLVAYPILD---LKRP--KLDVREYVRALEQAVINTLAEYGIEAE 127
>gnl|CDD|181087 PRK07701, flgL, flagellar hook-associated protein FlgL; Validated.
Length = 298
Score = 30.0 bits (68), Expect = 4.4
Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 487 LRNINSSL-KMQILYGSELQ-GKRITLESDD 515
LRNINS+L K+ Y +L GK+IT SDD
Sbjct: 13 LRNINSNLEKLD-KYQEQLSTGKKITRPSDD 42
>gnl|CDD|171344 PRK11920, rirA, iron-responsive transcriptional regulator;
Reviewed.
Length = 153
Score = 28.6 bits (64), Expect = 6.7
Identities = 11/14 (78%), Positives = 11/14 (78%)
Query: 343 PLVDKCGLNRPLRK 356
PLVD CGLN LRK
Sbjct: 100 PLVDSCGLNSALRK 113
>gnl|CDD|204381 pfam10027, DUF2269, Predicted integral membrane protein (DUF2269).
Members of this family of bacterial hypothetical
integral membrane proteins have no known function.
Length = 150
Score = 28.4 bits (64), Expect = 7.2
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 194 FPLAFGVPALLMFLAIIVFIIGKP 217
A GVPA + +AI ++ KP
Sbjct: 127 IWFALGVPAFIALVAIFWLMVAKP 150
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 29.2 bits (66), Expect = 8.3
Identities = 29/138 (21%), Positives = 59/138 (42%), Gaps = 19/138 (13%)
Query: 75 LFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGG 134
LF G + D + G+ +++I +++++ G +L + +VG +++ +G GG
Sbjct: 64 LFAGKLGDRF-GRKKSLLIGNVLFVIGALLQGFAKGKSFYM-----LIVGRVIVGLGVGG 117
Query: 135 IKPCVSSFGGDQFIVPEQSAQLEKFF-SLFYFSINAGSLISTFITPIFRHDMQCFGQEAC 193
I V + + I P +L SL+ I G L++ I +
Sbjct: 118 ISVLVPMYISE--IAP---KKLRGALGSLYQLGITFGILVAAIIGLGLNK----YSNSDG 168
Query: 194 FPLAFG---VPALLMFLA 208
+ + G VPA+L+ +
Sbjct: 169 WRIPLGLQFVPAILLLIG 186
>gnl|CDD|237676 PRK14329, PRK14329, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 467
Score = 29.2 bits (66), Expect = 9.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 469 IRDEKQQAHLKRLGEFHDLRNINSSLKMQIL 499
IRD +Q KRL +F+ L+ N L + +L
Sbjct: 71 IRDNAEQKVRKRLEKFNALKKKNPKLIVGVL 101
>gnl|CDD|217952 pfam04189, Gcd10p, Gcd10p family. eIF-3 is a multi-subunit complex
that stimulates translation initiation in vitro at
several different steps. This family corresponds to the
gamma subunit if eIF3. The Yeast protein Gcd10p has also
been shown to be part of a complex with the
methyltransferase Gcd14p that is involved in modifying
tRNA.
Length = 299
Score = 28.8 bits (65), Expect = 9.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 296 GSRWTFQANRMDGRVFGTSLEIKPDQ 321
G +F AN + G +GT+ EI D+
Sbjct: 33 GKFGSFPANDIIGLPYGTTFEIDEDK 58
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.141 0.422
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 35,737,599
Number of extensions: 3615483
Number of successful extensions: 4776
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4723
Number of HSP's successfully gapped: 84
Length of query: 691
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 587
Effective length of database: 6,324,786
Effective search space: 3712649382
Effective search space used: 3712649382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (27.6 bits)